AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780037946.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780037946.01.T01 MTR_7g038720 97.993 548 10 1 1 548 1 547 0.0 1118
MsG0780037946.01.T01 MTR_7g030030 97.993 548 10 1 1 548 1 547 0.0 1118
MsG0780037946.01.T01 MTR_8g019500 95.281 551 18 5 1 548 1 546 0.0 1075
MsG0780037946.01.T01 MTR_5g014290 24.920 313 203 9 245 539 171 469 6.43e-17 84.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780037946.01.T01 AT4G04770 76.418 564 110 5 1 548 1 557 0.0 898
MsG0780037946.01.T01 AT5G44316 58.123 554 142 9 1 548 1 470 0.0 616
MsG0780037946.01.T01 AT1G32500 24.923 325 222 6 215 529 148 460 2.99e-19 91.3

Find 117 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAACTGATCTTCACCAATTT+TGG 0.088841 7:+36738287 None:intergenic
AATGAGCTTCCCGATGAATT+TGG 0.191847 7:-36738186 MsG0780037946.01.T01:CDS
GATTTGGTTAGGAATTATTT+AGG 0.202220 7:-36740211 MsG0780037946.01.T01:CDS
CAGTGTGATTCCATGCTTAT+TGG 0.219953 7:-36739530 MsG0780037946.01.T01:CDS
TAGGAGTATGGTGGAGTATT+TGG 0.220424 7:-36740011 MsG0780037946.01.T01:CDS
TTAATCGAGGGTTTCTTCTT+AGG 0.225416 7:+36740433 None:intergenic
GTTTCTGTTGATAATCCTTT+TGG 0.244130 7:+36740610 None:intergenic
AAACGATTCTGTTCGTTTAA+CGG 0.286876 7:+36740355 None:intergenic
GGATAACGGTGATTTGTGTT+TGG 0.304767 7:+36740783 None:intergenic
GATAACGGTGATTTGTGTTT+GGG 0.306425 7:+36740784 None:intergenic
CGCGATTACGACAAGAAATT+CGG 0.317548 7:-36740664 MsG0780037946.01.T01:CDS
AAATAATTCCTAACCAAATC+TGG 0.322490 7:+36740214 None:intergenic
TATCTGTTATCTGACCAATT+TGG 0.324912 7:+36740496 None:intergenic
GCTTGTTCAGGTTCAGTCTA+AGG 0.336826 7:-36739576 MsG0780037946.01.T01:CDS
AGATTGGGAAGTGGGTTTGA+TGG 0.355909 7:+36740815 None:intergenic
CTGTTATAGAGGGCTTGTTC+AGG 0.372714 7:-36739588 MsG0780037946.01.T01:CDS
ATTTGGTTAGGAATTATTTA+GGG 0.377879 7:-36740210 MsG0780037946.01.T01:CDS
CGTTGATTGTGGCGGATGAT+AGG 0.379139 7:-36740030 MsG0780037946.01.T01:CDS
GAAGTATCCGAGCGTTGTTT+TGG 0.379206 7:-36739759 MsG0780037946.01.T01:CDS
TTTCTATTGCAACTACTCAT+AGG 0.386827 7:-36740297 MsG0780037946.01.T01:CDS
TTCGATTTCGGATGCTGTTA+AGG 0.387550 7:-36740242 MsG0780037946.01.T01:CDS
AGTATTCGACTGTGCAGAAT+TGG 0.387705 7:-36739904 MsG0780037946.01.T01:CDS
TGTTAAGGAGTATCCAGATT+TGG 0.388881 7:-36740227 MsG0780037946.01.T01:CDS
CCCTAAAATCCGAACCTGAT+TGG 0.389746 7:-36740570 MsG0780037946.01.T01:CDS
GAGGCTAGTACGTCCAAAAT+TGG 0.390303 7:-36738300 MsG0780037946.01.T01:CDS
TCTTGTCGTAATCGCGGTTA+CGG 0.398938 7:+36740671 None:intergenic
AGGATTAATGCGTTGGAGAC+GGG 0.399896 7:-36740067 MsG0780037946.01.T01:CDS
GTTGAGTTGTATTGTGGGGA+GGG 0.400958 7:-36739938 MsG0780037946.01.T01:CDS
AGGAGTATCCAGATTTGGTT+AGG 0.403665 7:-36740222 MsG0780037946.01.T01:CDS
CGAAAATGAAAGAACCAAAT+TGG 0.408334 7:-36740510 MsG0780037946.01.T01:CDS
TCGTGGACTCAGGTGGAGAC+TGG 0.409146 7:-36739797 MsG0780037946.01.T01:CDS
TTGAGTGGGTTGTGGATGTA+AGG 0.416950 7:+36740864 None:intergenic
AAGCTGGTTTGAGTGGGTTG+TGG 0.422237 7:+36740856 None:intergenic
CTCATGAGCTTGAAGCTTGA+GGG 0.426381 7:-36738147 MsG0780037946.01.T01:CDS
GCAATGGCTGCTATGATCTC+TGG 0.432036 7:-36738228 MsG0780037946.01.T01:CDS
TAATTATCAACAGGCTGATA+CGG 0.438638 7:-36739690 MsG0780037946.01.T01:CDS
CGAAAATTGAGCATCCAATC+AGG 0.439256 7:+36740556 None:intergenic
AGACTGGGTCCGCGATTACT+TGG 0.440480 7:-36739781 MsG0780037946.01.T01:CDS
ATATCTTGAAAATCTATAGT+TGG 0.442228 7:+36740472 None:intergenic
TCGTGCTCAATTCTTGCTGA+TGG 0.448471 7:+36738321 None:intergenic
TTTGACGAATAATTATCAAC+AGG 0.459812 7:-36739699 MsG0780037946.01.T01:CDS
GTATTTCTGCTGGACATTCA+AGG 0.462786 7:-36739613 MsG0780037946.01.T01:CDS
ATTGAGCATCCAATCAGGTT+CGG 0.471647 7:+36740561 None:intergenic
ATATCGAAGGGTATTTCTGC+TGG 0.472937 7:-36739623 MsG0780037946.01.T01:CDS
TATCTTGAAAATCTATAGTT+GGG 0.473477 7:+36740473 None:intergenic
CGGTTGTTGAGTTGTATTGT+GGG 0.475492 7:-36739943 MsG0780037946.01.T01:CDS
TGGTATGCGGGTGATGAGAA+TGG 0.481158 7:-36739884 MsG0780037946.01.T01:CDS
TGTGGCGGATGATAGGAGTA+TGG 0.485495 7:-36740023 MsG0780037946.01.T01:CDS
ATCGGACACTTAACACCCTT+CGG 0.492822 7:+36740109 None:intergenic
ACCTCGGAGCCAAATTCATC+GGG 0.494987 7:+36738177 None:intergenic
GGGACTAAGATGATACATAA+AGG 0.495409 7:-36739668 MsG0780037946.01.T01:CDS
CGCGGTTACGGAGAATTTCA+CGG 0.497813 7:+36740683 None:intergenic
CATTCAAGGAACTGTTATAG+AGG 0.498044 7:-36739599 MsG0780037946.01.T01:CDS
GATTCTTTCACAATTCCAAA+AGG 0.499044 7:-36740625 MsG0780037946.01.T01:CDS
TTGTCATCGGTAGATGAAGT+TGG 0.506952 7:+36740709 None:intergenic
AATTATCAACAGGCTGATAC+GGG 0.507180 7:-36739689 MsG0780037946.01.T01:CDS
GGTGATGAGAATGGGAAAGG+TGG 0.510158 7:-36739875 MsG0780037946.01.T01:CDS
TGTTGAGTTGTATTGTGGGG+AGG 0.511336 7:-36739939 MsG0780037946.01.T01:CDS
TCGAAGTATCTCAAAAGCTC+AGG 0.512282 7:+36740391 None:intergenic
TTGAGATACTTCGATAAGCT+CGG 0.521652 7:-36740382 MsG0780037946.01.T01:CDS
TAGGATTAATGCGTTGGAGA+CGG 0.522422 7:-36740068 MsG0780037946.01.T01:CDS
GCTCATGAGCTTGAAGCTTG+AGG 0.522434 7:-36738148 MsG0780037946.01.T01:CDS
TAACGGTGATTTGTGTTTGG+GGG 0.522817 7:+36740786 None:intergenic
TTTGAGAAGCTGGTTTGAGT+GGG 0.526103 7:+36740850 None:intergenic
CGTGGACTCAGGTGGAGACT+GGG 0.526944 7:-36739796 MsG0780037946.01.T01:CDS
CACCTCGGAGCCAAATTCAT+CGG 0.533895 7:+36738176 None:intergenic
TAGGGCTGAGATTAAACGAA+TGG 0.540218 7:+36740588 None:intergenic
ATTTGAGAGGACGTTGATTG+TGG 0.541228 7:-36740041 MsG0780037946.01.T01:CDS
TTCTTCTAAGCTATTAATCG+AGG 0.547950 7:+36740420 None:intergenic
GTGATGAGAATGGGAAAGGT+GGG 0.548593 7:-36739874 MsG0780037946.01.T01:CDS
GGATTAATGCGTTGGAGACG+GGG 0.554424 7:-36740066 MsG0780037946.01.T01:CDS
GGTATGCGGGTGATGAGAAT+GGG 0.557534 7:-36739883 MsG0780037946.01.T01:CDS
TTGGAGGGTGATGAGAGTGT+TGG 0.558769 7:-36739740 MsG0780037946.01.T01:CDS
CAAGCTTCAAGCTCATGAGC+TGG 0.559865 7:+36738151 None:intergenic
AGGAAGACACTTGAGAAGGC+TGG 0.560350 7:-36740277 MsG0780037946.01.T01:CDS
TCACCCTCCAAAACAACGCT+CGG 0.561244 7:+36739752 None:intergenic
TCCATGGCTTCTCTTCTCAA+CGG 0.561678 7:-36740901 MsG0780037946.01.T01:CDS
AAAGAGTAGGATAATATCGA+AGG 0.564748 7:-36739636 MsG0780037946.01.T01:CDS
GCGGTTGTTGAGTTGTATTG+TGG 0.564872 7:-36739944 MsG0780037946.01.T01:CDS
GCCGTTGAGAAGAGAAGCCA+TGG 0.565553 7:+36740900 None:intergenic
ATAACGGTGATTTGTGTTTG+GGG 0.566138 7:+36740785 None:intergenic
CGCATTAATCCTAAAATACG+TGG 0.567141 7:+36740078 None:intergenic
TCTTCTAAGCTATTAATCGA+GGG 0.569205 7:+36740421 None:intergenic
GTCGAAGATATCGTGGACTC+AGG 0.570802 7:-36739807 MsG0780037946.01.T01:CDS
AAGGAAAGAATACAAAGAGT+AGG 0.571457 7:-36739649 MsG0780037946.01.T01:CDS
TGGAGACGGGGCAATTTGAG+AGG 0.580773 7:-36740054 MsG0780037946.01.T01:CDS
GCGGGTGATGAGAATGGGAA+AGG 0.581778 7:-36739878 MsG0780037946.01.T01:CDS
GAATACATATCCTTACATCC+AGG 0.591093 7:-36739492 MsG0780037946.01.T01:intron
AGTATGGTGGAGTATTTGGA+AGG 0.598035 7:-36740007 MsG0780037946.01.T01:CDS
ATTCAAGGAACTGTTATAGA+GGG 0.600696 7:-36739598 MsG0780037946.01.T01:CDS
TCATGAGCTTGAAGCTTGAG+GGG 0.602914 7:-36738146 MsG0780037946.01.T01:CDS
TTGAAGCTTGAGGGGTCAGT+CGG 0.603318 7:-36738138 MsG0780037946.01.T01:CDS
AAGAGTAGGATAATATCGAA+GGG 0.614934 7:-36739635 MsG0780037946.01.T01:CDS
AAATACGTGGATATCTGCAT+CGG 0.617924 7:+36740091 None:intergenic
GAAGATATCGTGGACTCAGG+TGG 0.621504 7:-36739804 MsG0780037946.01.T01:CDS
ACGAAGAGAGGATTGTGTGC+TGG 0.622028 7:-36739836 MsG0780037946.01.T01:CDS
TTATTACGCTGCATTGAATG+CGG 0.624878 7:-36740164 MsG0780037946.01.T01:CDS
TCCCGATGAATTTGGCTCCG+AGG 0.627231 7:-36738178 MsG0780037946.01.T01:CDS
AGCACTATCACCAATAAGCA+TGG 0.629725 7:+36739520 None:intergenic
GTAAGAAGTCGAAGATATCG+TGG 0.634199 7:-36739814 MsG0780037946.01.T01:CDS
CGAATTTCTTGTCGTAATCG+CGG 0.638662 7:+36740665 None:intergenic
ACTGTGCAGAATTGGTATGC+GGG 0.639721 7:-36739896 MsG0780037946.01.T01:CDS
GGCGGATGATAGGAGTATGG+TGG 0.641159 7:-36740020 MsG0780037946.01.T01:CDS
GTTCGTAACTAACGTCTGAA+CGG 0.647103 7:+36740746 None:intergenic
GCTCATGAGCTGGTTCACCT+CGG 0.653360 7:+36738161 None:intergenic
GCGTAATAATTATCATCACT+AGG 0.656830 7:+36740178 None:intergenic
GACTGTGCAGAATTGGTATG+CGG 0.657058 7:-36739897 MsG0780037946.01.T01:CDS
TCATAGGAAGACACTTGAGA+AGG 0.657651 7:-36740281 MsG0780037946.01.T01:CDS
TGTTCAGGTTCAGTCTAAGG+CGG 0.659200 7:-36739573 MsG0780037946.01.T01:CDS
GAAGCTCATTGAAGACATCA+CGG 0.661065 7:+36738199 None:intergenic
GAATCGTTTAGCGAATGTTG+CGG 0.668424 7:-36740341 MsG0780037946.01.T01:CDS
GTATGGTGGAGTATTTGGAA+GGG 0.671768 7:-36740006 MsG0780037946.01.T01:CDS
TGAGAGGACGTTGATTGTGG+CGG 0.679907 7:-36740038 MsG0780037946.01.T01:CDS
ATCAGCAAGAATTGAGCACG+AGG 0.694946 7:-36738319 MsG0780037946.01.T01:CDS
CGGATACTTCCAAGTAATCG+CGG 0.697357 7:+36739772 None:intergenic
GGTTGTTGAGTTGTATTGTG+GGG 0.708201 7:-36739942 MsG0780037946.01.T01:CDS
ATTATCAACAGGCTGATACG+GGG 0.731328 7:-36739688 MsG0780037946.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAATAGCAATTAATTAT+GGG - Chr7:36739983-36740002 MsG0780037946.01.T01:CDS 10.0%
!! ATTACAAATATGGAAAAAAA+AGG + Chr7:36740629-36740648 None:intergenic 15.0%
!! GATAAAATAGCAATTAATTA+TGG - Chr7:36739982-36740001 MsG0780037946.01.T01:CDS 15.0%
!! TTACAAATATGGAAAAAAAA+GGG + Chr7:36740628-36740647 None:intergenic 15.0%
!! AATAATTAATGTCTATGGAT+CGG - Chr7:36739616-36739635 MsG0780037946.01.T01:CDS 20.0%
!! AGATAACGATAAGAATATAT+GGG - Chr7:36739645-36739664 MsG0780037946.01.T01:CDS 20.0%
!! ATATCTTGAAAATCTATAGT+TGG + Chr7:36738563-36738582 None:intergenic 20.0%
!! ATTTGGTTAGGAATTATTTA+GGG - Chr7:36738822-36738841 MsG0780037946.01.T01:intron 20.0%
!! CAAAGATTTCATCAATAATA+TGG - Chr7:36740507-36740526 MsG0780037946.01.T01:CDS 20.0%
!! CAGTTAATAATTAATGTCTA+TGG - Chr7:36739611-36739630 MsG0780037946.01.T01:CDS 20.0%
!! TAGATAACGATAAGAATATA+TGG - Chr7:36739644-36739663 MsG0780037946.01.T01:CDS 20.0%
!! TATCTTGAAAATCTATAGTT+GGG + Chr7:36738562-36738581 None:intergenic 20.0%
!! TCTATATTAGTATTACTTCA+AGG + Chr7:36739943-36739962 None:intergenic 20.0%
!! TGTTTAATCAAGTATGAAAA+CGG + Chr7:36740344-36740363 None:intergenic 20.0%
!!! AATTGATTCCTTAAAATTCA+AGG + Chr7:36740019-36740038 None:intergenic 20.0%
!!! TGTTATATTTTGTTCGATTT+CGG - Chr7:36738778-36738797 MsG0780037946.01.T01:intron 20.0%
!!! TTATTTTACTTTCAACAAAG+AGG - Chr7:36740765-36740784 MsG0780037946.01.T01:CDS 20.0%
!!! TTGGATATATTTTCTAAGAT+TGG - Chr7:36739713-36739732 MsG0780037946.01.T01:CDS 20.0%
! AAATAATTCCTAACCAAATC+TGG + Chr7:36738821-36738840 None:intergenic 25.0%
! AATAGACTATGAAAAAGCAA+TGG - Chr7:36740788-36740807 MsG0780037946.01.T01:CDS 25.0%
! AATTATGTAACAATAGAGCA+TGG + Chr7:36739794-36739813 None:intergenic 25.0%
! ATATCATATGCACAGAATAT+CGG - Chr7:36740206-36740225 MsG0780037946.01.T01:CDS 25.0%
! CCTTAAAATTCAAGGATTAT+TGG + Chr7:36740011-36740030 None:intergenic 25.0%
! CTATGATTTAAGAACTACAT+GGG - Chr7:36740175-36740194 MsG0780037946.01.T01:CDS 25.0%
! GAAAAAAAAGGGTGAAAATA+AGG + Chr7:36740617-36740636 None:intergenic 25.0%
! GAACAAAAAAAAAAGTTACC+TGG + Chr7:36739561-36739580 None:intergenic 25.0%
! GTTTAATCAAGTATGAAAAC+GGG + Chr7:36740343-36740362 None:intergenic 25.0%
! TTTAATCAAGTATGAAAACG+GGG + Chr7:36740342-36740361 None:intergenic 25.0%
! TTTCATCTATAACTTGAAAC+TGG + Chr7:36739919-36739938 None:intergenic 25.0%
! TTTGACGAATAATTATCAAC+AGG - Chr7:36739333-36739352 MsG0780037946.01.T01:intron 25.0%
!! ATTTTTATCATAAGAAGGTG+CGG + Chr7:36739056-36739075 None:intergenic 25.0%
!! CCAATAATCCTTGAATTTTA+AGG - Chr7:36740008-36740027 MsG0780037946.01.T01:CDS 25.0%
!! GATTTGGTTAGGAATTATTT+AGG - Chr7:36738821-36738840 MsG0780037946.01.T01:intron 25.0%
!! TATAATTTTGTTACGAAGAG+AGG - Chr7:36739184-36739203 MsG0780037946.01.T01:intron 25.0%
!!! AGCTGATTTTTATCATAAGA+AGG + Chr7:36739061-36739080 None:intergenic 25.0%
!!! ATTTTAACGGTTTTGGATAA+CGG + Chr7:36738266-36738285 None:intergenic 25.0%
AAAAAAGTTACCTGGATGTA+AGG + Chr7:36739553-36739572 None:intergenic 30.0%
AAACGATTCTGTTCGTTTAA+CGG + Chr7:36738680-36738699 None:intergenic 30.0%
AAAGAGTAGGATAATATCGA+AGG - Chr7:36739396-36739415 MsG0780037946.01.T01:intron 30.0%
AAAGGGTGAAAATAAGGAAA+AGG + Chr7:36740611-36740630 None:intergenic 30.0%
AAGAGTAGGATAATATCGAA+GGG - Chr7:36739397-36739416 MsG0780037946.01.T01:intron 30.0%
AAGGAAAGAATACAAAGAGT+AGG - Chr7:36739383-36739402 MsG0780037946.01.T01:intron 30.0%
ACTAGAAATTGTTAGTATCC+TGG - Chr7:36740278-36740297 MsG0780037946.01.T01:CDS 30.0%
AGAATTAATCCTGATTGTGT+TGG - Chr7:36739960-36739979 MsG0780037946.01.T01:CDS 30.0%
ATAAGGAAAAGGAAACAAGA+TGG + Chr7:36740600-36740619 None:intergenic 30.0%
ATTCAAGGAACTGTTATAGA+GGG - Chr7:36739434-36739453 MsG0780037946.01.T01:intron 30.0%
CGAAAATGAAAGAACCAAAT+TGG - Chr7:36738522-36738541 MsG0780037946.01.T01:intron 30.0%
GATTCTTTCACAATTCCAAA+AGG - Chr7:36738407-36738426 MsG0780037946.01.T01:intron 30.0%
GCGTAATAATTATCATCACT+AGG + Chr7:36738857-36738876 None:intergenic 30.0%
GCTATGATTTAAGAACTACA+TGG - Chr7:36740174-36740193 MsG0780037946.01.T01:CDS 30.0%
TAATTATCAACAGGCTGATA+CGG - Chr7:36739342-36739361 MsG0780037946.01.T01:intron 30.0%
TATCTGTTATCTGACCAATT+TGG + Chr7:36738539-36738558 None:intergenic 30.0%
TCTTCTAAGCTATTAATCGA+GGG + Chr7:36738614-36738633 None:intergenic 30.0%
TTCTTCTAAGCTATTAATCG+AGG + Chr7:36738615-36738634 None:intergenic 30.0%
TTTCTATTGCAACTACTCAT+AGG - Chr7:36738735-36738754 MsG0780037946.01.T01:intron 30.0%
! AATTTCACGGATTTTGTCAT+CGG + Chr7:36738339-36738358 None:intergenic 30.0%
! CTATTTTATCCAACACAATC+AGG + Chr7:36739972-36739991 None:intergenic 30.0%
! GTTTCTGGACATTACAAATA+TGG + Chr7:36740639-36740658 None:intergenic 30.0%
! TAACTGATCTTCACCAATTT+TGG + Chr7:36740748-36740767 None:intergenic 30.0%
!! CTAAGATTGGTTTCTCTATA+TGG - Chr7:36739726-36739745 MsG0780037946.01.T01:CDS 30.0%
!! TCGTTTTGTTATATACCGAA+GGG - Chr7:36738908-36738927 MsG0780037946.01.T01:intron 30.0%
!! TGAAATTGCAATTGTTTTGC+AGG - Chr7:36740680-36740699 MsG0780037946.01.T01:CDS 30.0%
!!! GTATTTTAGGATTAATGCGT+TGG - Chr7:36738958-36738977 MsG0780037946.01.T01:intron 30.0%
!!! GTTTCTGTTGATAATCCTTT+TGG + Chr7:36738425-36738444 None:intergenic 30.0%
AAAACGGGGTGATAAAAATC+AGG + Chr7:36740328-36740347 None:intergenic 35.0%
AAATACGTGGATATCTGCAT+CGG + Chr7:36738944-36738963 None:intergenic 35.0%
AAGCAAATCCAATAAGACAC+AGG + Chr7:36739832-36739851 None:intergenic 35.0%
AATTATCAACAGGCTGATAC+GGG - Chr7:36739343-36739362 MsG0780037946.01.T01:intron 35.0%
ACAGAATATCGGTACTTCTT+CGG - Chr7:36740217-36740236 MsG0780037946.01.T01:CDS 35.0%
AGGTATCAAAGACCAAATGT+TGG + Chr7:36740443-36740462 None:intergenic 35.0%
AGTGGAAGATAACTCTGATA+TGG + Chr7:36740573-36740592 None:intergenic 35.0%
CATTCAAGGAACTGTTATAG+AGG - Chr7:36739433-36739452 MsG0780037946.01.T01:intron 35.0%
CGCATTAATCCTAAAATACG+TGG + Chr7:36738957-36738976 None:intergenic 35.0%
GAATACATATCCTTACATCC+AGG - Chr7:36739540-36739559 MsG0780037946.01.T01:CDS 35.0%
GGGACTAAGATGATACATAA+AGG - Chr7:36739364-36739383 MsG0780037946.01.T01:intron 35.0%
GGTATCAAAGACCAAATGTT+GGG + Chr7:36740442-36740461 None:intergenic 35.0%
TAAAAATCAGCTTCATGCTG+CGG - Chr7:36739069-36739088 MsG0780037946.01.T01:intron 35.0%
TTAATCGAGGGTTTCTTCTT+AGG + Chr7:36738602-36738621 None:intergenic 35.0%
TTATTACGCTGCATTGAATG+CGG - Chr7:36738868-36738887 MsG0780037946.01.T01:intron 35.0%
TTGAGATACTTCGATAAGCT+CGG - Chr7:36738650-36738669 MsG0780037946.01.T01:intron 35.0%
TTTCATGAGTACAAGTCTCA+TGG + Chr7:36740665-36740684 None:intergenic 35.0%
! ACATTTGGTCTTTGATACCT+CGG - Chr7:36740443-36740462 MsG0780037946.01.T01:CDS 35.0%
! ACCAAATGTTGGGATAGTTT+TGG + Chr7:36740432-36740451 None:intergenic 35.0%
! ATAACGGTGATTTGTGTTTG+GGG + Chr7:36738250-36738269 None:intergenic 35.0%
! GATAACGGTGATTTGTGTTT+GGG + Chr7:36738251-36738270 None:intergenic 35.0%
! GTGTCTTTTATTCTGTTTCC+TGG - Chr7:36740403-36740422 MsG0780037946.01.T01:CDS 35.0%
! TCTTTTATTCTGTTTCCTGG+TGG - Chr7:36740406-36740425 MsG0780037946.01.T01:CDS 35.0%
! TGCAGATATCCACGTATTTT+AGG - Chr7:36738945-36738964 MsG0780037946.01.T01:intron 35.0%
!! AACGTCTGAACGGATTTTAA+CGG + Chr7:36738279-36738298 None:intergenic 35.0%
!! GTCGTTTTGTTATATACCGA+AGG - Chr7:36738907-36738926 MsG0780037946.01.T01:intron 35.0%
!! TGAACGGATTTTAACGGTTT+TGG + Chr7:36738273-36738292 None:intergenic 35.0%
!! TGTTAAGGAGTATCCAGATT+TGG - Chr7:36738805-36738824 MsG0780037946.01.T01:intron 35.0%
!!! AAGTGCTTTTTTTGAGAAGC+TGG + Chr7:36738195-36738214 None:intergenic 35.0%
!!! ATTGTTTTGACAACTGTGGT+GGG - Chr7:36740141-36740160 MsG0780037946.01.T01:CDS 35.0%
!!! GAGTGTTGGAGAGTTTTATT+CGG - Chr7:36739306-36739325 MsG0780037946.01.T01:intron 35.0%
!!! TATTGTTTTGACAACTGTGG+TGG - Chr7:36740140-36740159 MsG0780037946.01.T01:CDS 35.0%
AATGAGCTTCCCGATGAATT+TGG - Chr7:36740846-36740865 MsG0780037946.01.T01:CDS 40.0%
AGCACTATCACCAATAAGCA+TGG + Chr7:36739515-36739534 None:intergenic 40.0%
AGGAAACAAGATGGAAGTAG+TGG + Chr7:36740591-36740610 None:intergenic 40.0%
AGTATTCGACTGTGCAGAAT+TGG - Chr7:36739128-36739147 MsG0780037946.01.T01:intron 40.0%
ATCCGTGGTGTTTAGTTGAA+AGG - Chr7:36739859-36739878 MsG0780037946.01.T01:CDS 40.0%
ATTATCAACAGGCTGATACG+GGG - Chr7:36739344-36739363 MsG0780037946.01.T01:intron 40.0%
ATTGAGCATCCAATCAGGTT+CGG + Chr7:36738474-36738493 None:intergenic 40.0%
CAGTGTGATTCCATGCTTAT+TGG - Chr7:36739502-36739521 MsG0780037946.01.T01:CDS 40.0%
CCATGAAGTATGCATGAACA+AGG + Chr7:36739688-36739707 None:intergenic 40.0%
CCTTGTTCATGCATACTTCA+TGG - Chr7:36739685-36739704 MsG0780037946.01.T01:CDS 40.0%
CGAAAATTGAGCATCCAATC+AGG + Chr7:36738479-36738498 None:intergenic 40.0%
CGAATTTCTTGTCGTAATCG+CGG + Chr7:36738370-36738389 None:intergenic 40.0%
CGCGATTACGACAAGAAATT+CGG - Chr7:36738368-36738387 MsG0780037946.01.T01:intron 40.0%
GAAGCTCATTGAAGACATCA+CGG + Chr7:36740836-36740855 None:intergenic 40.0%
GAATCGTTTAGCGAATGTTG+CGG - Chr7:36738691-36738710 MsG0780037946.01.T01:intron 40.0%
GCCAAAACTATCCCAACATT+TGG - Chr7:36740428-36740447 MsG0780037946.01.T01:CDS 40.0%
GTAAGAAGTCGAAGATATCG+TGG - Chr7:36739218-36739237 MsG0780037946.01.T01:intron 40.0%
GTTCGTAACTAACGTCTGAA+CGG + Chr7:36738289-36738308 None:intergenic 40.0%
TAGGATTAATGCGTTGGAGA+CGG - Chr7:36738964-36738983 MsG0780037946.01.T01:intron 40.0%
TAGGGCTGAGATTAAACGAA+TGG + Chr7:36738447-36738466 None:intergenic 40.0%
TCATAGGAAGACACTTGAGA+AGG - Chr7:36738751-36738770 MsG0780037946.01.T01:intron 40.0%
TCCAATAAGACACAGGTAAG+AGG + Chr7:36739825-36739844 None:intergenic 40.0%
TCCGTGGTGTTTAGTTGAAA+GGG - Chr7:36739860-36739879 MsG0780037946.01.T01:CDS 40.0%
TCCTCTTACCTGTGTCTTAT+TGG - Chr7:36739821-36739840 MsG0780037946.01.T01:CDS 40.0%
TGCATACTTCATGGACACTT+TGG - Chr7:36739694-36739713 MsG0780037946.01.T01:CDS 40.0%
TGGTTGCAGTCTATTGTTGT+TGG - Chr7:36740475-36740494 MsG0780037946.01.T01:CDS 40.0%
TTCGATTTCGGATGCTGTTA+AGG - Chr7:36738790-36738809 MsG0780037946.01.T01:intron 40.0%
TTGTCATCGGTAGATGAAGT+TGG + Chr7:36738326-36738345 None:intergenic 40.0%
! AGTATGGTGGAGTATTTGGA+AGG - Chr7:36739025-36739044 MsG0780037946.01.T01:intron 40.0%
! ATTTGAGAGGACGTTGATTG+TGG - Chr7:36738991-36739010 MsG0780037946.01.T01:intron 40.0%
! CCAATCAGGTTCGGATTTTA+GGG + Chr7:36738465-36738484 None:intergenic 40.0%
! CGGTTGTTGAGTTGTATTGT+GGG - Chr7:36739089-36739108 MsG0780037946.01.T01:intron 40.0%
! GAGCTTTTTGATGCTGAGTT+TGG - Chr7:36740300-36740319 MsG0780037946.01.T01:CDS 40.0%
! GGATAACGGTGATTTGTGTT+TGG + Chr7:36738252-36738271 None:intergenic 40.0%
! GGTTGTTGAGTTGTATTGTG+GGG - Chr7:36739090-36739109 MsG0780037946.01.T01:intron 40.0%
! GTATGGTGGAGTATTTGGAA+GGG - Chr7:36739026-36739045 MsG0780037946.01.T01:intron 40.0%
! GTATTTCTGCTGGACATTCA+AGG - Chr7:36739419-36739438 MsG0780037946.01.T01:intron 40.0%
! TAACGGTGATTTGTGTTTGG+GGG + Chr7:36738249-36738268 None:intergenic 40.0%
! TAGGAGTATGGTGGAGTATT+TGG - Chr7:36739021-36739040 MsG0780037946.01.T01:intron 40.0%
! TCCAATCAGGTTCGGATTTT+AGG + Chr7:36738466-36738485 None:intergenic 40.0%
! TCGAAGTATCTCAAAAGCTC+AGG + Chr7:36738644-36738663 None:intergenic 40.0%
!! AACTGTGGTGGGCAAATATA+CGG - Chr7:36740152-36740171 MsG0780037946.01.T01:CDS 40.0%
!! AGGAGTATCCAGATTTGGTT+AGG - Chr7:36738810-36738829 MsG0780037946.01.T01:intron 40.0%
!! ATATCGAAGGGTATTTCTGC+TGG - Chr7:36739409-36739428 MsG0780037946.01.T01:intron 40.0%
!! TTTGAGAAGCTGGTTTGAGT+GGG + Chr7:36738185-36738204 None:intergenic 40.0%
!!! AATGCGGCTGTTTTTAGTGA+CGG - Chr7:36738884-36738903 MsG0780037946.01.T01:intron 40.0%
!!! GGCTATTGTTTTGACAACTG+TGG - Chr7:36740137-36740156 MsG0780037946.01.T01:CDS 40.0%
!!! GGTTTTTGAGATTGGGAAGT+GGG + Chr7:36738228-36738247 None:intergenic 40.0%
!!! GTTTGGGGGTTTTTGAGATT+GGG + Chr7:36738235-36738254 None:intergenic 40.0%
!!! TGTTTGGGGGTTTTTGAGAT+TGG + Chr7:36738236-36738255 None:intergenic 40.0%
!!! TTTTGAGAAGCTGGTTTGAG+TGG + Chr7:36738186-36738205 None:intergenic 40.0%
ACTCAGCATCAAAAAGCTCC+AGG + Chr7:36740299-36740318 None:intergenic 45.0%
ACTGTGCAGAATTGGTATGC+GGG - Chr7:36739136-36739155 MsG0780037946.01.T01:intron 45.0%
AGCACAACATGGTGAGAGAT+TGG - Chr7:36740116-36740135 MsG0780037946.01.T01:CDS 45.0%
AGGATTAATGCGTTGGAGAC+GGG - Chr7:36738965-36738984 MsG0780037946.01.T01:intron 45.0%
ATCAGCAAGAATTGAGCACG+AGG - Chr7:36740713-36740732 MsG0780037946.01.T01:CDS 45.0%
ATCGGACACTTAACACCCTT+CGG + Chr7:36738926-36738945 None:intergenic 45.0%
ATTTGCTTGTCCTGTATCCG+TGG - Chr7:36739844-36739863 MsG0780037946.01.T01:CDS 45.0%
CAACTAAACACCACGGATAC+AGG + Chr7:36739857-36739876 None:intergenic 45.0%
CAAGTCTCATGGCAAGTTTC+TGG + Chr7:36740654-36740673 None:intergenic 45.0%
CACCATGTTGTGCTTGTACT+AGG + Chr7:36740110-36740129 None:intergenic 45.0%
CCCCTTTCAACTAAACACCA+CGG + Chr7:36739864-36739883 None:intergenic 45.0%
CCCTAAAATCCGAACCTGAT+TGG - Chr7:36738462-36738481 MsG0780037946.01.T01:intron 45.0%
CCGTGGTGTTTAGTTGAAAG+GGG - Chr7:36739861-36739880 MsG0780037946.01.T01:CDS 45.0%
CGGATACTTCCAAGTAATCG+CGG + Chr7:36739263-36739282 None:intergenic 45.0%
CTCATGAGCTTGAAGCTTGA+GGG - Chr7:36740885-36740904 MsG0780037946.01.T01:CDS 45.0%
GACTGTGCAGAATTGGTATG+CGG - Chr7:36739135-36739154 MsG0780037946.01.T01:intron 45.0%
GAGGCTAGTACGTCCAAAAT+TGG - Chr7:36740732-36740751 MsG0780037946.01.T01:CDS 45.0%
GTACTTCTTCGGCATACATG+TGG - Chr7:36740228-36740247 MsG0780037946.01.T01:CDS 45.0%
GTGATGAGAATGGGAAAGGT+GGG - Chr7:36739158-36739177 MsG0780037946.01.T01:intron 45.0%
TCATGAGCTTGAAGCTTGAG+GGG - Chr7:36740886-36740905 MsG0780037946.01.T01:CDS 45.0%
TCGTGCTCAATTCTTGCTGA+TGG + Chr7:36740714-36740733 None:intergenic 45.0%
TCTTGTCGTAATCGCGGTTA+CGG + Chr7:36738364-36738383 None:intergenic 45.0%
TGCCTAGTACAAGCACAACA+TGG - Chr7:36740105-36740124 MsG0780037946.01.T01:CDS 45.0%
! AGATTGGGAAGTGGGTTTGA+TGG + Chr7:36738220-36738239 None:intergenic 45.0%
! CATACATGTGGTCTAGTTCG+AGG - Chr7:36740240-36740259 MsG0780037946.01.T01:CDS 45.0%
! CTGTTATAGAGGGCTTGTTC+AGG - Chr7:36739444-36739463 MsG0780037946.01.T01:intron 45.0%
! GCGGTTGTTGAGTTGTATTG+TGG - Chr7:36739088-36739107 MsG0780037946.01.T01:intron 45.0%
! GCTTGTTCAGGTTCAGTCTA+AGG - Chr7:36739456-36739475 MsG0780037946.01.T01:intron 45.0%
! GTTGAGTTGTATTGTGGGGA+GGG - Chr7:36739094-36739113 MsG0780037946.01.T01:intron 45.0%
! TGTTCAGGTTCAGTCTAAGG+CGG - Chr7:36739459-36739478 MsG0780037946.01.T01:intron 45.0%
! TGTTGAGTTGTATTGTGGGG+AGG - Chr7:36739093-36739112 MsG0780037946.01.T01:intron 45.0%
!! GAAGTATCCGAGCGTTGTTT+TGG - Chr7:36739273-36739292 MsG0780037946.01.T01:intron 45.0%
!! TTGAGTGGGTTGTGGATGTA+AGG + Chr7:36738171-36738190 None:intergenic 45.0%
!!! ATGCGGCTGTTTTTAGTGAC+GGG - Chr7:36738885-36738904 MsG0780037946.01.T01:intron 45.0%
!!! GGGTTTTTGAGATTGGGAAG+TGG + Chr7:36738229-36738248 None:intergenic 45.0%
!!! TATCCGAGCGTTGTTTTGGA+GGG - Chr7:36739277-36739296 MsG0780037946.01.T01:intron 45.0%
ACCTCGGAGCCAAATTCATC+GGG + Chr7:36740858-36740877 None:intergenic 50.0%
ACGAAGAGAGGATTGTGTGC+TGG - Chr7:36739196-36739215 MsG0780037946.01.T01:intron 50.0%
AGGAAGACACTTGAGAAGGC+TGG - Chr7:36738755-36738774 MsG0780037946.01.T01:intron 50.0%
CAAGCTTCAAGCTCATGAGC+TGG + Chr7:36740884-36740903 None:intergenic 50.0%
CACCTCGGAGCCAAATTCAT+CGG + Chr7:36740859-36740878 None:intergenic 50.0%
CGCGGTTACGGAGAATTTCA+CGG + Chr7:36738352-36738371 None:intergenic 50.0%
GAAGATATCGTGGACTCAGG+TGG - Chr7:36739228-36739247 MsG0780037946.01.T01:intron 50.0%
GCAATGGCTGCTATGATCTC+TGG - Chr7:36740804-36740823 MsG0780037946.01.T01:CDS 50.0%
GCTCATGAGCTTGAAGCTTG+AGG - Chr7:36740884-36740903 MsG0780037946.01.T01:CDS 50.0%
GGATTAATGCGTTGGAGACG+GGG - Chr7:36738966-36738985 MsG0780037946.01.T01:intron 50.0%
GGTATGCGGGTGATGAGAAT+GGG - Chr7:36739149-36739168 MsG0780037946.01.T01:intron 50.0%
GGTGATGAGAATGGGAAAGG+TGG - Chr7:36739157-36739176 MsG0780037946.01.T01:intron 50.0%
GTCGAAGATATCGTGGACTC+AGG - Chr7:36739225-36739244 MsG0780037946.01.T01:intron 50.0%
TCACCCTCCAAAACAACGCT+CGG + Chr7:36739283-36739302 None:intergenic 50.0%
TGATACCTCGGTAGCTTCAC+TGG - Chr7:36740455-36740474 MsG0780037946.01.T01:CDS 50.0%
TGGTATGCGGGTGATGAGAA+TGG - Chr7:36739148-36739167 MsG0780037946.01.T01:intron 50.0%
TTGAAGCTTGAGGGGTCAGT+CGG - Chr7:36740894-36740913 MsG0780037946.01.T01:CDS 50.0%
! TGAGAGGACGTTGATTGTGG+CGG - Chr7:36738994-36739013 MsG0780037946.01.T01:intron 50.0%
! TTGGAGGGTGATGAGAGTGT+TGG - Chr7:36739292-36739311 MsG0780037946.01.T01:intron 50.0%
!! AAGCTGGTTTGAGTGGGTTG+TGG + Chr7:36738179-36738198 None:intergenic 50.0%
!! CGTTGATTGTGGCGGATGAT+AGG - Chr7:36739002-36739021 MsG0780037946.01.T01:intron 50.0%
!! TGTGGCGGATGATAGGAGTA+TGG - Chr7:36739009-36739028 MsG0780037946.01.T01:intron 50.0%
!!! GTATCCGAGCGTTGTTTTGG+AGG - Chr7:36739276-36739295 MsG0780037946.01.T01:intron 50.0%
!!! TTGGGATAGTTTTGGCCACC+AGG + Chr7:36740424-36740443 None:intergenic 50.0%
AGACTGGGTCCGCGATTACT+TGG - Chr7:36739251-36739270 MsG0780037946.01.T01:intron 55.0%
GCGGGTGATGAGAATGGGAA+AGG - Chr7:36739154-36739173 MsG0780037946.01.T01:intron 55.0%
TGCAACCAGTGAAGCTACCG+AGG + Chr7:36740463-36740482 None:intergenic 55.0%
TGGAGACGGGGCAATTTGAG+AGG - Chr7:36738978-36738997 MsG0780037946.01.T01:intron 55.0%
! GCTCATGAGCTGGTTCACCT+CGG + Chr7:36740874-36740893 None:intergenic 55.0%
! GGCGGATGATAGGAGTATGG+TGG - Chr7:36739012-36739031 MsG0780037946.01.T01:intron 55.0%
! TCCCGATGAATTTGGCTCCG+AGG - Chr7:36740854-36740873 MsG0780037946.01.T01:CDS 55.0%
CGTGGACTCAGGTGGAGACT+GGG - Chr7:36739236-36739255 MsG0780037946.01.T01:intron 60.0%
TCGTGGACTCAGGTGGAGAC+TGG - Chr7:36739235-36739254 MsG0780037946.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr7 gene 36738134 36740920 36738134 ID=MsG0780037946.01;Name=MsG0780037946.01
Chr7 mRNA 36738134 36740920 36738134 ID=MsG0780037946.01.T01;Parent=MsG0780037946.01;Name=MsG0780037946.01.T01;_AED=0.50;_eAED=0.51;_QI=0|0|0|1|1|1|2|0|548
Chr7 exon 36739493 36740920 36739493 ID=MsG0780037946.01.T01:exon:5925;Parent=MsG0780037946.01.T01
Chr7 exon 36738134 36738352 36738134 ID=MsG0780037946.01.T01:exon:5926;Parent=MsG0780037946.01.T01
Chr7 CDS 36739493 36740920 36739493 ID=MsG0780037946.01.T01:cds;Parent=MsG0780037946.01.T01
Chr7 CDS 36738134 36738352 36738134 ID=MsG0780037946.01.T01:cds;Parent=MsG0780037946.01.T01
Gene Sequence

>MsG0780037946.01.T01

ATGGCTTCTCTTCTCAACGGCAGCAGCGTTTCTTCCTTACATCCACAACCCACTCAAACCAGCTTCTCAAAAAAAGCACTTATCCATCAAACCCACTTCCCAATCTCAAAAACCCCCAAACACAAATCACCGTTATCCAAAACCGTTAAAATCCGTTCAGACGTTAGTTACGAACAACTCAACACTTCTCCAACTTCATCTACCGATGACAAAATCCGTGAAATTCTCCGTAACCGCGATTACGACAAGAAATTCGGTTTCAACATCAATATCGATTCTTTCACAATTCCAAAAGGATTATCAACAGAAACCATTCGTTTAATCTCAGCCCTAAAATCCGAACCTGATTGGATGCTCAATTTTCGATTAAACGCGTTCGAGAAATTCGCGAAAATGAAAGAACCAAATTGGTCAGATAACAGATACCCAACTATAGATTTTCAAGATATATGCTATTATTCAGCTCCTAAGAAGAAACCCTCGATTAATAGCTTAGAAGAAGCTGATCCTGAGCTTTTGAGATACTTCGATAAGCTCGGTGTACCGTTAAACGAACAGAATCGTTTAGCGAATGTTGCGGTAGATGCTGTTTTAGACAGTGTTTCTATTGCAACTACTCATAGGAAGACACTTGAGAAGGCTGGTGTTATATTTTGTTCGATTTCGGATGCTGTTAAGGAGTATCCAGATTTGGTTAGGAATTATTTAGGGAAAGTTGTTCCTAGTGATGATAATTATTACGCTGCATTGAATGCGGCTGTTTTTAGTGACGGGTCGTTTTGTTATATACCGAAGGGTGTTAAGTGTCCGATGCAGATATCCACGTATTTTAGGATTAATGCGTTGGAGACGGGGCAATTTGAGAGGACGTTGATTGTGGCGGATGATAGGAGTATGGTGGAGTATTTGGAAGGGTGTACCGCACCTTCTTATGATAAAAATCAGCTTCATGCTGCGGTTGTTGAGTTGTATTGTGGGGAGGGTGCAGAGATTAAGTATTCGACTGTGCAGAATTGGTATGCGGGTGATGAGAATGGGAAAGGTGGGATTTATAATTTTGTTACGAAGAGAGGATTGTGTGCTGGTAAGAAGTCGAAGATATCGTGGACTCAGGTGGAGACTGGGTCCGCGATTACTTGGAAGTATCCGAGCGTTGTTTTGGAGGGTGATGAGAGTGTTGGAGAGTTTTATTCGGTTGCTTTGACGAATAATTATCAACAGGCTGATACGGGGACTAAGATGATACATAAAGGAAAGAATACAAAGAGTAGGATAATATCGAAGGGTATTTCTGCTGGACATTCAAGGAACTGTTATAGAGGGCTTGTTCAGGTTCAGTCTAAGGCGGAGAATGCGAAAAACTCTTCTCAGTGTGATTCCATGCTTATTGGTGATAGTGCTGCTGCGAATACATATCCTTACATCCAGGTGAAGAATCCATCAGCAAGAATTGAGCACGAGGCTAGTACGTCCAAAATTGGTGAAGATCAGTTATTTTACTTTCAACAAAGAGGAATAGACTATGAAAAAGCAATGGCTGCTATGATCTCTGGATTTTGCCGTGATGTCTTCAATGAGCTTCCCGATGAATTTGGCTCCGAGGTGAACCAGCTCATGAGCTTGAAGCTTGAGGGGTCAGTCGGATAA

Protein sequence

>MsG0780037946.01.T01

MASLLNGSSVSSLHPQPTQTSFSKKALIHQTHFPISKTPKHKSPLSKTVKIRSDVSYEQLNTSPTSSTDDKIREILRNRDYDKKFGFNINIDSFTIPKGLSTETIRLISALKSEPDWMLNFRLNAFEKFAKMKEPNWSDNRYPTIDFQDICYYSAPKKKPSINSLEEADPELLRYFDKLGVPLNEQNRLANVAVDAVLDSVSIATTHRKTLEKAGVIFCSISDAVKEYPDLVRNYLGKVVPSDDNYYAALNAAVFSDGSFCYIPKGVKCPMQISTYFRINALETGQFERTLIVADDRSMVEYLEGCTAPSYDKNQLHAAVVELYCGEGAEIKYSTVQNWYAGDENGKGGIYNFVTKRGLCAGKKSKISWTQVETGSAITWKYPSVVLEGDESVGEFYSVALTNNYQQADTGTKMIHKGKNTKSRIISKGISAGHSRNCYRGLVQVQSKAENAKNSSQCDSMLIGDSAAANTYPYIQVKNPSARIEHEASTSKIGEDQLFYFQQRGIDYEKAMAAMISGFCRDVFNELPDEFGSEVNQLMSLKLEGSVG*