AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380015659.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015659.01.T01 MTR_3g074380 96.154 156 6 0 1 156 1 156 2.75e-100 296
MsG0380015659.01.T01 MTR_3g074390 89.873 158 14 1 1 156 1 158 3.56e-89 273
MsG0380015659.01.T01 MTR_3g074390 83.544 79 13 0 155 233 367 445 1.14e-37 138
MsG0380015659.01.T01 MTR_3g074330 72.289 166 36 2 1 159 1 163 9.41e-76 227
MsG0380015659.01.T01 MTR_3g074360 72.289 166 36 2 1 159 1 163 9.41e-76 227
MsG0380015659.01.T01 MTR_3g074310 71.687 166 37 2 1 159 1 163 6.79e-75 225
MsG0380015659.01.T01 MTR_3g074410 76.923 156 35 1 1 156 1 155 1.79e-73 232
MsG0380015659.01.T01 MTR_3g074410 54.348 138 35 2 96 233 333 442 5.19e-35 130
MsG0380015659.01.T01 MTR_3g074270 67.532 154 47 2 1 154 1 151 5.02e-66 212
MsG0380015659.01.T01 MTR_3g074270 39.716 141 37 3 93 233 327 419 1.77e-18 84.3
MsG0380015659.01.T01 MTR_5g096000 42.379 269 101 6 1 238 1 246 1.17e-58 188
MsG0380015659.01.T01 MTR_3g074400 76.923 104 24 0 53 156 1 104 7.99e-48 163
MsG0380015659.01.T01 MTR_3g074400 62.025 79 30 0 155 233 281 359 1.69e-24 100
MsG0380015659.01.T01 MTR_7g091690 56.051 157 64 2 1 154 1 155 1.79e-47 164
MsG0380015659.01.T01 MTR_7g091690 46.250 80 41 1 154 233 364 441 1.31e-12 67.0
MsG0380015659.01.T01 MTR_3g008160 54.605 152 67 2 12 162 9 159 5.44e-47 163
MsG0380015659.01.T01 MTR_3g008160 47.664 107 48 4 126 226 329 433 1.75e-19 87.4
MsG0380015659.01.T01 MTR_5g094760 53.548 155 71 1 1 154 1 155 2.75e-46 160
MsG0380015659.01.T01 MTR_5g094760 46.341 82 42 1 154 235 364 443 1.71e-12 66.6
MsG0380015659.01.T01 MTR_3g093010 53.293 167 71 3 1 165 1 162 4.48e-46 160
MsG0380015659.01.T01 MTR_3g093010 43.023 86 48 1 151 235 359 444 1.39e-17 81.6
MsG0380015659.01.T01 MTR_5g041550 51.923 156 70 2 1 154 1 153 1.21e-44 157
MsG0380015659.01.T01 MTR_5g041550 42.222 90 51 1 151 239 360 449 1.08e-16 79.0
MsG0380015659.01.T01 MTR_3g023480 51.389 144 68 1 13 154 8 151 6.19e-44 154
MsG0380015659.01.T01 MTR_3g023480 33.784 148 61 4 93 235 332 447 1.53e-14 72.8
MsG0380015659.01.T01 MTR_1g104770 49.102 167 79 3 1 165 1 163 1.11e-43 154
MsG0380015659.01.T01 MTR_1g104770 47.887 71 36 1 151 221 360 429 3.45e-16 77.8
MsG0380015659.01.T01 MTR_5g006070 55.034 149 62 3 20 165 16 162 1.57e-43 154
MsG0380015659.01.T01 MTR_5g006070 41.748 103 52 3 140 235 345 446 2.48e-18 84.0
MsG0380015659.01.T01 MTR_0009s0370 50.318 157 75 2 8 162 3 158 5.35e-43 152
MsG0380015659.01.T01 MTR_0009s0370 34.028 144 62 5 97 235 332 447 3.25e-13 68.9
MsG0380015659.01.T01 MTR_4g116790 50.714 140 69 0 15 154 16 155 5.48e-43 149
MsG0380015659.01.T01 MTR_3g008170 51.948 154 71 3 10 162 8 159 4.42e-42 150
MsG0380015659.01.T01 MTR_3g008170 46.847 111 49 4 123 226 327 434 6.04e-20 88.6
MsG0380015659.01.T01 MTR_6g087040 51.534 163 77 2 1 162 1 162 4.56e-42 149
MsG0380015659.01.T01 MTR_6g087040 43.056 72 39 2 155 226 366 435 3.07e-11 63.2
MsG0380015659.01.T01 MTR_6g088375 51.534 163 77 2 1 162 1 162 4.56e-42 149
MsG0380015659.01.T01 MTR_6g088375 43.056 72 39 2 155 226 366 435 3.07e-11 63.2
MsG0380015659.01.T01 MTR_0204s0020 51.429 140 68 0 15 154 10 149 5.14e-42 149
MsG0380015659.01.T01 MTR_0204s0020 35.088 171 96 6 61 226 268 428 7.29e-17 79.7
MsG0380015659.01.T01 MTR_0204s0040 51.429 140 68 0 15 154 18 157 5.34e-42 149
MsG0380015659.01.T01 MTR_0204s0040 28.745 247 143 9 3 235 222 449 1.09e-16 79.0
MsG0380015659.01.T01 MTR_1g038630 52.555 137 63 1 20 154 17 153 1.08e-41 149
MsG0380015659.01.T01 MTR_1g038630 38.384 99 58 1 140 235 344 442 8.77e-16 76.6
MsG0380015659.01.T01 MTR_4g116790 50.714 140 69 0 15 154 16 155 1.43e-41 149
MsG0380015659.01.T01 MTR_4g116790 46.512 86 40 2 154 235 364 447 9.05e-13 67.8
MsG0380015659.01.T01 MTR_4g116770 51.429 140 68 0 15 154 214 353 2.00e-41 150
MsG0380015659.01.T01 MTR_4g116770 28.745 247 143 9 3 235 418 645 9.28e-17 79.3
MsG0380015659.01.T01 MTR_5g082540 53.285 137 62 1 20 154 17 153 4.41e-41 147
MsG0380015659.01.T01 MTR_5g082540 41.176 85 50 0 151 235 358 442 4.79e-15 74.3
MsG0380015659.01.T01 MTR_4g091370 58.503 147 59 2 20 165 17 162 2.46e-40 145
MsG0380015659.01.T01 MTR_4g091370 37.349 83 51 1 154 235 362 444 9.34e-15 73.6
MsG0380015659.01.T01 MTR_8g102860 52.055 146 68 2 21 165 21 165 2.53e-40 145
MsG0380015659.01.T01 MTR_8g102860 33.673 98 62 2 140 235 348 444 2.71e-11 63.2
MsG0380015659.01.T01 MTR_1g104750 49.102 167 78 4 1 165 1 162 3.13e-39 142
MsG0380015659.01.T01 MTR_1g104750 46.479 71 37 1 151 221 359 428 2.62e-16 77.8
MsG0380015659.01.T01 MTR_4g090600 57.143 147 61 2 20 165 17 162 2.20e-38 140
MsG0380015659.01.T01 MTR_4g090600 37.349 83 51 1 154 235 362 444 1.77e-13 69.7
MsG0380015659.01.T01 MTR_0204s0020 49.286 140 68 1 15 154 10 146 3.63e-38 139
MsG0380015659.01.T01 MTR_0204s0020 35.088 171 96 6 61 226 265 425 7.68e-17 79.3
MsG0380015659.01.T01 MTR_1g104780 53.285 137 59 3 32 165 28 162 9.27e-38 138
MsG0380015659.01.T01 MTR_1g104780 44.304 79 41 1 158 233 362 440 2.32e-18 84.0
MsG0380015659.01.T01 MTR_0064s0040 48.889 135 56 2 26 159 24 146 3.09e-37 128
MsG0380015659.01.T01 MTR_3g007910 46.667 165 71 4 1 165 1 148 2.84e-34 128
MsG0380015659.01.T01 MTR_3g007910 40.000 90 53 1 151 239 327 416 1.07e-16 79.0
MsG0380015659.01.T01 MTR_3g074370 48.936 141 44 1 93 233 161 273 1.20e-33 124
MsG0380015659.01.T01 MTR_3g074340 48.936 141 44 1 93 233 161 273 1.50e-33 124
MsG0380015659.01.T01 MTR_3g074320 48.227 141 45 1 93 233 161 273 5.89e-33 122
MsG0380015659.01.T01 MTR_3g008160 54.054 111 49 2 53 162 1 110 3.68e-30 117
MsG0380015659.01.T01 MTR_3g008160 47.664 107 48 4 126 226 280 384 1.29e-19 87.4
MsG0380015659.01.T01 MTR_3g093060 56.436 101 41 1 53 150 1 101 7.66e-29 113
MsG0380015659.01.T01 MTR_3g093060 45.556 90 48 1 151 239 312 401 1.43e-19 87.4
MsG0380015659.01.T01 MTR_1g038600 44.444 135 59 2 20 154 17 135 1.31e-28 113
MsG0380015659.01.T01 MTR_1g038600 39.394 99 57 1 140 235 326 424 5.56e-16 77.0
MsG0380015659.01.T01 MTR_8g102860 50.000 114 55 2 53 165 1 113 6.60e-27 108
MsG0380015659.01.T01 MTR_8g102860 33.673 98 62 2 140 235 296 392 3.20e-11 62.8
MsG0380015659.01.T01 MTR_5g006070 51.724 116 51 3 53 165 1 114 7.73e-27 107
MsG0380015659.01.T01 MTR_5g006070 41.748 103 52 3 140 235 297 398 2.54e-18 84.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015659.01.T01 AT1G34580 64.744 156 53 1 1 156 1 154 1.13e-59 196
MsG0380015659.01.T01 AT1G34580 55.000 80 36 0 154 233 365 444 5.27e-25 103
MsG0380015659.01.T01 AT3G19930 54.545 154 67 2 1 154 1 151 2.36e-48 166
MsG0380015659.01.T01 AT3G19930 49.296 71 36 0 153 223 360 430 4.04e-17 80.5
MsG0380015659.01.T01 AT3G19930 54.545 154 67 2 1 154 1 151 2.36e-48 166
MsG0380015659.01.T01 AT3G19930 49.296 71 36 0 153 223 360 430 4.04e-17 80.5
MsG0380015659.01.T01 AT1G11260 56.291 151 64 2 13 162 10 159 6.50e-47 163
MsG0380015659.01.T01 AT1G11260 44.444 99 51 2 141 235 346 444 1.09e-17 82.0
MsG0380015659.01.T01 AT4G21480 47.644 191 92 3 13 196 10 199 2.10e-45 158
MsG0380015659.01.T01 AT4G21480 43.434 99 52 2 141 235 344 442 3.39e-18 83.6
MsG0380015659.01.T01 AT5G26340 51.497 167 75 4 1 165 1 163 4.23e-44 155
MsG0380015659.01.T01 AT5G26340 46.067 89 43 2 151 235 360 447 3.41e-18 83.6
MsG0380015659.01.T01 AT4G02050 51.205 166 79 2 1 165 1 165 6.14e-44 155
MsG0380015659.01.T01 AT4G02050 44.186 86 42 2 154 235 364 447 1.05e-16 79.3
MsG0380015659.01.T01 AT4G02050 51.205 166 79 2 1 165 1 165 6.14e-44 155
MsG0380015659.01.T01 AT4G02050 44.186 86 42 2 154 235 364 447 1.05e-16 79.3
MsG0380015659.01.T01 AT5G23270 54.140 157 66 4 1 154 1 154 9.15e-44 154
MsG0380015659.01.T01 AT5G23270 47.887 71 37 0 154 224 364 434 5.85e-16 77.0
MsG0380015659.01.T01 AT1G77210 51.205 166 79 2 1 165 1 165 4.02e-43 152
MsG0380015659.01.T01 AT1G77210 33.735 83 53 2 151 233 362 442 3.45e-11 62.8
MsG0380015659.01.T01 AT1G77210 51.205 166 79 2 1 165 1 165 4.02e-43 152
MsG0380015659.01.T01 AT1G77210 33.735 83 53 2 151 233 362 442 3.45e-11 62.8
MsG0380015659.01.T01 AT5G61520 46.341 164 81 2 19 176 17 179 5.95e-42 149
MsG0380015659.01.T01 AT5G61520 38.462 117 64 3 123 233 330 444 4.24e-13 68.6
MsG0380015659.01.T01 AT1G50310 52.258 155 72 2 1 154 1 154 4.91e-41 147
MsG0380015659.01.T01 AT1G50310 32.812 128 58 1 96 223 334 433 1.55e-14 72.8
MsG0380015659.01.T01 AT3G19940 51.613 155 73 2 1 154 1 154 1.64e-39 143
MsG0380015659.01.T01 AT3G19940 41.892 74 43 0 151 224 360 433 1.05e-13 70.5
MsG0380015659.01.T01 AT5G26250 49.664 149 74 1 17 165 13 160 4.98e-39 141
MsG0380015659.01.T01 AT1G34580 65.385 104 36 0 53 156 1 104 5.41e-39 140
MsG0380015659.01.T01 AT1G34580 55.000 80 36 0 154 233 315 394 3.85e-25 103
MsG0380015659.01.T01 AT3G05960 48.630 146 74 1 20 165 15 159 1.22e-37 137
MsG0380015659.01.T01 AT1G07340 49.254 134 68 0 21 154 18 151 2.24e-37 137
MsG0380015659.01.T01 AT1G07340 50.980 51 23 1 179 229 384 432 3.34e-12 65.9
MsG0380015659.01.T01 AT5G61520 42.748 131 68 2 52 176 2 131 1.83e-26 107
MsG0380015659.01.T01 AT5G61520 38.462 117 64 3 123 233 282 396 5.19e-13 68.2
MsG0380015659.01.T01 AT1G50310 32.812 128 58 1 96 223 191 290 1.64e-14 72.4
MsG0380015659.01.T01 AT1G77210 33.333 96 59 3 141 233 200 293 3.77e-11 62.4

Find 64 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATATTCCCATGCTCATTT+TGG 0.112731 3:+73219322 MsG0380015659.01.T01:CDS
GGATATGACATTGGAATTTC+AGG 0.174947 3:+73218927 MsG0380015659.01.T01:CDS
CCTGTGGTTCTTATATTTAC+AGG 0.188974 3:-73220549 None:intergenic
TGTTTATACTCTGCTGGTTT+TGG 0.264387 3:+73220480 MsG0380015659.01.T01:CDS
ATTGTTGGTGGTGCTATTAA+TGG 0.274425 3:+73219290 MsG0380015659.01.T01:CDS
TCATTTACTTACACACTTCA+TGG 0.280989 3:-73220819 None:intergenic
GCTGCCTTCCTTAAAATATC+TGG 0.289328 3:-73219107 None:intergenic
CCAGATGCTGCCATCAATAT+TGG 0.323176 3:+73218840 MsG0380015659.01.T01:CDS
CGAAGAAACGTCATCATAAT+AGG 0.339968 3:+73219254 MsG0380015659.01.T01:CDS
ATGTTATGTCACTTTAAGTT+TGG 0.344402 3:+73220634 MsG0380015659.01.T01:exon
ACATGCATCGTTGCTGCTTC+CGG 0.358767 3:+73218891 MsG0380015659.01.T01:CDS
CTATTATGTTTATACTCTGC+TGG 0.362807 3:+73220474 MsG0380015659.01.T01:CDS
ATATGGGGAAAACATTGTTT+TGG 0.371996 3:+73220757 MsG0380015659.01.T01:three_prime_UTR
TATCTTGCCACCAATATTGA+TGG 0.389773 3:-73218850 None:intergenic
GCAGTGGTGTCTGGTGTTGA+TGG 0.402312 3:+73220408 MsG0380015659.01.T01:CDS
CTTCTTGTTCTATGCTGGTT+GGG 0.406015 3:+73220660 MsG0380015659.01.T01:three_prime_UTR
CCTTCTTGTTCTATGCTGGT+TGG 0.407272 3:+73220659 MsG0380015659.01.T01:three_prime_UTR
GGAGCCTTCTTGTTCTATGC+TGG 0.408479 3:+73220655 MsG0380015659.01.T01:three_prime_UTR
TGGATTCAATGTACACCATA+TGG 0.418769 3:+73220740 MsG0380015659.01.T01:three_prime_UTR
ACGTCTTCTCTTTATCTAGC+TGG 0.428341 3:+73219185 MsG0380015659.01.T01:CDS
CCAATATTGATGGCAGCATC+TGG 0.432816 3:-73218840 None:intergenic
GGTGGTGCCCTCTTTATTGT+TGG 0.444551 3:+73219275 MsG0380015659.01.T01:CDS
AAGGGAATTCCTTTAGTCTC+AGG 0.463134 3:-73220718 None:intergenic
GGATTCAATGTACACCATAT+GGG 0.477310 3:+73220741 MsG0380015659.01.T01:three_prime_UTR
GGTCGTGGGGCCCTCTAACA+TGG 0.478479 3:+73220505 MsG0380015659.01.T01:CDS
CTGTGGTTCTTATATTTACA+GGG 0.480105 3:-73220548 None:intergenic
TACTAATATTGCATTCCCCT+TGG 0.480612 3:-73220445 None:intergenic
ATTGTGCTAGCAGTGGTGTC+TGG 0.481749 3:+73220399 MsG0380015659.01.T01:CDS
CTTGGAATAAGCCATGTTAG+AGG 0.494856 3:-73220516 None:intergenic
GGTGCCCTCTTTATTGTTGG+TGG 0.497074 3:+73219278 MsG0380015659.01.T01:CDS
TTTGTGTAAATTGTATAGGT+AGG 0.499825 3:+73220859 MsG0380015659.01.T01:three_prime_UTR
CGATTTGTTAAAGGAGAAGA+TGG 0.500703 3:+73220783 MsG0380015659.01.T01:three_prime_UTR
AATAGCTATGCTTTGTCCTG+TGG 0.505069 3:-73220565 None:intergenic
AGCAAAGTCACCGCGTGGTA+TGG 0.506861 3:+73219230 MsG0380015659.01.T01:CDS
TGAGACTAAAGGAATTCCCT+TGG 0.516494 3:+73220720 MsG0380015659.01.T01:three_prime_UTR
GGGGAATGCAATATTAGTAT+TGG 0.522711 3:+73220449 MsG0380015659.01.T01:CDS
TATGGTGTACATTGAATCCA+AGG 0.528540 3:-73220737 None:intergenic
CGGTGACTTTGCTAGCTGCA+AGG 0.530108 3:-73219220 None:intergenic
TGGTGCTATTAATGGTGGTT+CGG 0.531917 3:+73219298 MsG0380015659.01.T01:CDS
TAGCACCACCAACAATAAAG+AGG 0.563652 3:-73219283 None:intergenic
GGTGACTTTGCTAGCTGCAA+GGG 0.565981 3:-73219219 None:intergenic
TTTACAGGGAAAATCTCACT+TGG 0.566699 3:-73220534 None:intergenic
AACACGACCCAAAATGAGCA+TGG 0.570691 3:-73219330 None:intergenic
GTTGGTGGTGCTATTAATGG+TGG 0.572136 3:+73219293 MsG0380015659.01.T01:CDS
CCTGTAAATATAAGAACCAC+AGG 0.573263 3:+73220549 MsG0380015659.01.T01:CDS
GGCTGGTGGGGTATTTGCTG+TGG 0.574846 3:+73218809 MsG0380015659.01.T01:CDS
ACTATATCACTAATTTGAAG+TGG 0.579890 3:-73220904 None:intergenic
GATGCTGCCATCAATATTGG+TGG 0.590546 3:+73218843 MsG0380015659.01.T01:CDS
TTGGAATAAGCCATGTTAGA+GGG 0.596308 3:-73220515 None:intergenic
TGCATCGTTGCTGCTTCCGG+TGG 0.604561 3:+73218894 MsG0380015659.01.T01:CDS
AGCACCACCAACAATAAAGA+GGG 0.605228 3:-73219282 None:intergenic
TGGTACAAATGACATATCCA+AGG 0.605738 3:+73220428 MsG0380015659.01.T01:CDS
GATTCAATGTACACCATATG+GGG 0.610171 3:+73220742 MsG0380015659.01.T01:three_prime_UTR
ACACGACCCAAAATGAGCAT+GGG 0.620677 3:-73219329 None:intergenic
GGTACAAATGACATATCCAA+GGG 0.626581 3:+73220429 MsG0380015659.01.T01:CDS
CCAACCAGCATAGAACAAGA+AGG 0.632155 3:-73220659 None:intergenic
TTCAGGAGGTGTTACAACGA+TGG 0.634531 3:+73219061 MsG0380015659.01.T01:intron
AGAAACGTCATCATAATAGG+TGG 0.673000 3:+73219257 MsG0380015659.01.T01:CDS
TGTGTCCATTGTGCTAGCAG+TGG 0.678099 3:+73220392 MsG0380015659.01.T01:CDS
AGACACCACTGCTAGCACAA+TGG 0.679999 3:-73220397 None:intergenic
ATGGTGTACATTGAATCCAA+GGG 0.688425 3:-73220736 None:intergenic
CAGCTAGCAAAGTCACCGCG+TGG 0.728015 3:+73219225 MsG0380015659.01.T01:CDS
GTACAAATGACATATCCAAG+GGG 0.751900 3:+73220430 MsG0380015659.01.T01:CDS
GTTTCTTCGACCATACCACG+CGG 0.876756 3:-73219240 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTAATAAATAGATAGTT+AGG - Chr3:73220293-73220312 None:intergenic 10.0%
!! TAATGTAATTCAATATAATA+AGG - Chr3:73218981-73219000 None:intergenic 10.0%
!!! AACAATTATTTTATGTAAAA+AGG + Chr3:73219493-73219512 MsG0380015659.01.T01:intron 10.0%
!!! TAAATAATTAGTTCTTAATT+TGG + Chr3:73219411-73219430 MsG0380015659.01.T01:intron 10.0%
!!! CTTTTTAATATGGTTTTAAA+GGG - Chr3:73220001-73220020 None:intergenic 15.0%
!!! TCTTTTTAATATGGTTTTAA+AGG - Chr3:73220002-73220021 None:intergenic 15.0%
!!! TTAATTATTATTTTACCAAC+AGG + Chr3:73219625-73219644 MsG0380015659.01.T01:intron 15.0%
!! AATGCAGTTGAAAATTTAAA+AGG - Chr3:73219607-73219626 None:intergenic 20.0%
!! ACACAAACAATTTAATTAGT+AGG - Chr3:73220354-73220373 None:intergenic 20.0%
!! TACAACATTAATGATTGTTT+AGG - Chr3:73219444-73219463 None:intergenic 20.0%
!!! AAAAGGAGTCTTTAAAAAAA+AGG - Chr3:73219590-73219609 None:intergenic 20.0%
!!! AATTCTTTCCAGATATTTTA+AGG + Chr3:73219099-73219118 MsG0380015659.01.T01:CDS 20.0%
!!! ATGTTTTGTGTAAATTGTAT+AGG + Chr3:73220855-73220874 MsG0380015659.01.T01:three_prime_UTR 20.0%
!!! TTTTATGTAAAAAGGAATAG+AGG + Chr3:73219501-73219520 MsG0380015659.01.T01:intron 20.0%
! ACTATATCACTAATTTGAAG+TGG - Chr3:73220907-73220926 None:intergenic 25.0%
! TTAATAAGTTCTTCTAACTC+AGG - Chr3:73219944-73219963 None:intergenic 25.0%
! TTTGTGTAAATTGTATAGGT+AGG + Chr3:73220859-73220878 MsG0380015659.01.T01:three_prime_UTR 25.0%
!! TCGATACTCTCTTTTTAATA+TGG - Chr3:73220011-73220030 None:intergenic 25.0%
!!! ATGTTATGTCACTTTAAGTT+TGG + Chr3:73220634-73220653 MsG0380015659.01.T01:exon 25.0%
!!! GGAAAGAATTTTTGAAGAAA+GGG - Chr3:73219089-73219108 None:intergenic 25.0%
!!! TGGAAAGAATTTTTGAAGAA+AGG - Chr3:73219090-73219109 None:intergenic 25.0%
AACTCAAGACAATTATAGTG+AGG - Chr3:73219563-73219582 None:intergenic 30.0%
CTATTATGTTTATACTCTGC+TGG + Chr3:73220474-73220493 MsG0380015659.01.T01:CDS 30.0%
CTGTGGTTCTTATATTTACA+GGG - Chr3:73220551-73220570 None:intergenic 30.0%
GCAATTTCAGATAGATACAA+TGG - Chr3:73219656-73219675 None:intergenic 30.0%
TAACTCAGGTTCAATATCTA+CGG - Chr3:73219930-73219949 None:intergenic 30.0%
TCATTTACTTACACACTTCA+TGG - Chr3:73220822-73220841 None:intergenic 30.0%
TTAATTTCTGCCATTGTACT+TGG + Chr3:73220148-73220167 MsG0380015659.01.T01:intron 30.0%
TTGTGAAAATGTCGAATTTC+AGG + Chr3:73219044-73219063 MsG0380015659.01.T01:intron 30.0%
! AAAACAATGTTTTCCCCATA+TGG - Chr3:73220758-73220777 None:intergenic 30.0%
! AAATATTCCCATGCTCATTT+TGG + Chr3:73219322-73219341 MsG0380015659.01.T01:CDS 30.0%
! AATATTCCCATGCTCATTTT+GGG + Chr3:73219323-73219342 MsG0380015659.01.T01:CDS 30.0%
! ATATGGGGAAAACATTGTTT+TGG + Chr3:73220757-73220776 MsG0380015659.01.T01:three_prime_UTR 30.0%
! CTTCTTTTTGGATATGACAT+TGG + Chr3:73218918-73218937 MsG0380015659.01.T01:CDS 30.0%
!! CTTTCCAGATATTTTAAGGA+AGG + Chr3:73219103-73219122 MsG0380015659.01.T01:CDS 30.0%
!!! AAGTCGCAAACACTTTTTTT+TGG + Chr3:73219388-73219407 MsG0380015659.01.T01:intron 30.0%
!!! TTTTGGTGTCGATTTGTTAA+AGG + Chr3:73220774-73220793 MsG0380015659.01.T01:three_prime_UTR 30.0%
AAAGCCTTACGCAAAATTAG+AGG + Chr3:73219899-73219918 MsG0380015659.01.T01:intron 35.0%
AAGAATCTTGTTCATAACCG+GGG + Chr3:73220228-73220247 MsG0380015659.01.T01:intron 35.0%
ACCAAATCGATCAACAAAAC+CGG - Chr3:73220206-73220225 None:intergenic 35.0%
AGAAACGTCATCATAATAGG+TGG + Chr3:73219257-73219276 MsG0380015659.01.T01:CDS 35.0%
AGACAATTATAGTGAGGTAG+AGG - Chr3:73219557-73219576 None:intergenic 35.0%
ATATCCAAAAAGAAGACCAC+CGG - Chr3:73218913-73218932 None:intergenic 35.0%
ATGGTGTACATTGAATCCAA+GGG - Chr3:73220739-73220758 None:intergenic 35.0%
CATTATGATGTTTGTCTGCT+TGG + Chr3:73220252-73220271 MsG0380015659.01.T01:intron 35.0%
CCTGTAAATATAAGAACCAC+AGG + Chr3:73220549-73220568 MsG0380015659.01.T01:CDS 35.0%
CCTGTGGTTCTTATATTTAC+AGG - Chr3:73220552-73220571 None:intergenic 35.0%
CGAAGAAACGTCATCATAAT+AGG + Chr3:73219254-73219273 MsG0380015659.01.T01:CDS 35.0%
CGAAGAATCTTGTTCATAAC+CGG + Chr3:73220226-73220245 MsG0380015659.01.T01:intron 35.0%
GAAGAATCTTGTTCATAACC+GGG + Chr3:73220227-73220246 MsG0380015659.01.T01:intron 35.0%
GATTCAATGTACACCATATG+GGG + Chr3:73220742-73220761 MsG0380015659.01.T01:three_prime_UTR 35.0%
GGATATGACATTGGAATTTC+AGG + Chr3:73218927-73218946 MsG0380015659.01.T01:CDS 35.0%
GGATTCAATGTACACCATAT+GGG + Chr3:73220741-73220760 MsG0380015659.01.T01:three_prime_UTR 35.0%
GGGGAATGCAATATTAGTAT+TGG + Chr3:73220449-73220468 MsG0380015659.01.T01:CDS 35.0%
GGTACAAATGACATATCCAA+GGG + Chr3:73220429-73220448 MsG0380015659.01.T01:CDS 35.0%
GTACAAATGACATATCCAAG+GGG + Chr3:73220430-73220449 MsG0380015659.01.T01:CDS 35.0%
TACTAATATTGCATTCCCCT+TGG - Chr3:73220448-73220467 None:intergenic 35.0%
TAGAGGTAAAACGAACATGA+GGG - Chr3:73219540-73219559 None:intergenic 35.0%
TATCTTGCCACCAATATTGA+TGG - Chr3:73218853-73218872 None:intergenic 35.0%
TATGGTGTACATTGAATCCA+AGG - Chr3:73220740-73220759 None:intergenic 35.0%
TGAAAATGTCGAATTTCAGG+AGG + Chr3:73219047-73219066 MsG0380015659.01.T01:intron 35.0%
TGGATTCAATGTACACCATA+TGG + Chr3:73220740-73220759 MsG0380015659.01.T01:three_prime_UTR 35.0%
TGGTACAAATGACATATCCA+AGG + Chr3:73220428-73220447 MsG0380015659.01.T01:CDS 35.0%
TTCAGATAGATACAATGGTG+CGG - Chr3:73219651-73219670 None:intergenic 35.0%
TTGGAATAAGCCATGTTAGA+GGG - Chr3:73220518-73220537 None:intergenic 35.0%
TTTACAGGGAAAATCTCACT+TGG - Chr3:73220537-73220556 None:intergenic 35.0%
! AATTGGTTCCTTCCTCATAA+CGG + Chr3:73219830-73219849 MsG0380015659.01.T01:intron 35.0%
! TTTTTCTTGCCTGAGACTAA+AGG + Chr3:73220709-73220728 MsG0380015659.01.T01:three_prime_UTR 35.0%
!! ATTGTTGGTGGTGCTATTAA+TGG + Chr3:73219290-73219309 MsG0380015659.01.T01:CDS 35.0%
!! ATTTTGGGTCGTGTTTTTCT+TGG + Chr3:73219338-73219357 MsG0380015659.01.T01:CDS 35.0%
!! CGATTTGTTAAAGGAGAAGA+TGG + Chr3:73220783-73220802 MsG0380015659.01.T01:three_prime_UTR 35.0%
!! CTTTCAATTCTTTTGGGAGT+TGG + Chr3:73219708-73219727 MsG0380015659.01.T01:intron 35.0%
!! TTTTGGGTCGTGTTTTTCTT+GGG + Chr3:73219339-73219358 MsG0380015659.01.T01:CDS 35.0%
!!! ATACCGGCTTTCAATTCTTT+TGG + Chr3:73219701-73219720 MsG0380015659.01.T01:intron 35.0%
!!! TACCGGCTTTCAATTCTTTT+GGG + Chr3:73219702-73219721 MsG0380015659.01.T01:intron 35.0%
!!! TGTTTATACTCTGCTGGTTT+TGG + Chr3:73220480-73220499 MsG0380015659.01.T01:CDS 35.0%
AAGGGAATTCCTTTAGTCTC+AGG - Chr3:73220721-73220740 None:intergenic 40.0%
AAGGTTAGACACAAGGCTAA+CGG - Chr3:73220176-73220195 None:intergenic 40.0%
AATAGCTATGCTTTGTCCTG+TGG - Chr3:73220568-73220587 None:intergenic 40.0%
ACGTCTTCTCTTTATCTAGC+TGG + Chr3:73219185-73219204 MsG0380015659.01.T01:CDS 40.0%
AGAATCTTGTTCATAACCGG+GGG + Chr3:73220229-73220248 MsG0380015659.01.T01:intron 40.0%
AGCACCACCAACAATAAAGA+GGG - Chr3:73219285-73219304 None:intergenic 40.0%
CAGAGATAAGGTTAGACACA+AGG - Chr3:73220183-73220202 None:intergenic 40.0%
CCAATTGTCATTACAACTGC+AGG - Chr3:73219816-73219835 None:intergenic 40.0%
CCGGTAAGTTGTTGGAAAAA+CGG - Chr3:73220061-73220080 None:intergenic 40.0%
CCTGCAGTTGTAATGACAAT+TGG + Chr3:73219813-73219832 MsG0380015659.01.T01:intron 40.0%
CGGTAAGTTGTTGGAAAAAC+GGG - Chr3:73220060-73220079 None:intergenic 40.0%
CTCCCAAAAGAATTGAAAGC+CGG - Chr3:73219707-73219726 None:intergenic 40.0%
CTTGGAATAAGCCATGTTAG+AGG - Chr3:73220519-73220538 None:intergenic 40.0%
GCTGCCTTCCTTAAAATATC+TGG - Chr3:73219110-73219129 None:intergenic 40.0%
GTAGAGGTAAAACGAACATG+AGG - Chr3:73219541-73219560 None:intergenic 40.0%
TAGCACCACCAACAATAAAG+AGG - Chr3:73219286-73219305 None:intergenic 40.0%
TGAGACTAAAGGAATTCCCT+TGG + Chr3:73220720-73220739 MsG0380015659.01.T01:three_prime_UTR 40.0%
! CGTTTTTCCAACAACTTACC+GGG + Chr3:73220059-73220078 MsG0380015659.01.T01:intron 40.0%
! CTTCTTGTTCTATGCTGGTT+GGG + Chr3:73220660-73220679 MsG0380015659.01.T01:three_prime_UTR 40.0%
! GGATCCTCTAATTTTGCGTA+AGG - Chr3:73219906-73219925 None:intergenic 40.0%
! GTCGTGTTTTTCTTGGGTTT+GGG + Chr3:73219345-73219364 MsG0380015659.01.T01:CDS 40.0%
! TCGTGTTTTTCTTGGGTTTG+GGG + Chr3:73219346-73219365 MsG0380015659.01.T01:CDS 40.0%
!! CCGTTTTTCCAACAACTTAC+CGG + Chr3:73220058-73220077 MsG0380015659.01.T01:intron 40.0%
!! GATATTTTAAGGAAGGCAGC+TGG + Chr3:73219110-73219129 MsG0380015659.01.T01:CDS 40.0%
!! TGGTGCTATTAATGGTGGTT+CGG + Chr3:73219298-73219317 MsG0380015659.01.T01:CDS 40.0%
!!! TATACTCTGCTGGTTTTGGT+TGG + Chr3:73220484-73220503 MsG0380015659.01.T01:CDS 40.0%
AACACGACCCAAAATGAGCA+TGG - Chr3:73219333-73219352 None:intergenic 45.0%
ACACGACCCAAAATGAGCAT+GGG - Chr3:73219332-73219351 None:intergenic 45.0%
ACCTAACCTCTTCCATTCTG+TGG + Chr3:73220105-73220124 MsG0380015659.01.T01:intron 45.0%
CAACAAAACCGGCAGAGATA+AGG - Chr3:73220195-73220214 None:intergenic 45.0%
CCAACCAGCATAGAACAAGA+AGG - Chr3:73220662-73220681 None:intergenic 45.0%
CCAGATGCTGCCATCAATAT+TGG + Chr3:73218840-73218859 MsG0380015659.01.T01:CDS 45.0%
CCTAACCTCTTCCATTCTGT+GGG + Chr3:73220106-73220125 MsG0380015659.01.T01:intron 45.0%
CCTTCTTGTTCTATGCTGGT+TGG + Chr3:73220659-73220678 MsG0380015659.01.T01:three_prime_UTR 45.0%
CTCAGGTTCAATATCTACGG+AGG - Chr3:73219927-73219946 None:intergenic 45.0%
GACAAACATCATAATGCCCC+CGG - Chr3:73220248-73220267 None:intergenic 45.0%
GATGCTGCCATCAATATTGG+TGG + Chr3:73218843-73218862 MsG0380015659.01.T01:CDS 45.0%
GTGTCTAACCTTATCTCTGC+CGG + Chr3:73220184-73220203 MsG0380015659.01.T01:intron 45.0%
TGTTGATCCCGGTAAGTTGT+TGG - Chr3:73220069-73220088 None:intergenic 45.0%
! CCAATATTGATGGCAGCATC+TGG - Chr3:73218843-73218862 None:intergenic 45.0%
! GCTAACGGATCCAAGTACAA+TGG - Chr3:73220161-73220180 None:intergenic 45.0%
! GGTCGTGTTTTTCTTGGGTT+TGG + Chr3:73219344-73219363 MsG0380015659.01.T01:CDS 45.0%
! TCTGAAATTGCTCCCCCAAA+TGG + Chr3:73219665-73219684 MsG0380015659.01.T01:intron 45.0%
!! AAGAGAGTATCGACCTCACT+TGG + Chr3:73220018-73220037 MsG0380015659.01.T01:intron 45.0%
!! ATTAAAAGCGCCTCGCCATT+TGG - Chr3:73219683-73219702 None:intergenic 45.0%
!! GTTGGTGGTGCTATTAATGG+TGG + Chr3:73219293-73219312 MsG0380015659.01.T01:CDS 45.0%
!! GTTTTTCTTGGGTTTGGGGT+CGG + Chr3:73219350-73219369 MsG0380015659.01.T01:CDS 45.0%
!! TTAAAAGCGCCTCGCCATTT+GGG - Chr3:73219682-73219701 None:intergenic 45.0%
!! TTCAGGAGGTGTTACAACGA+TGG + Chr3:73219061-73219080 MsG0380015659.01.T01:intron 45.0%
!!! GCCGGTTTTGTTGATCGATT+TGG + Chr3:73220202-73220221 MsG0380015659.01.T01:intron 45.0%
ACCACGTTCGACTAAGCTGT+TGG - Chr3:73219862-73219881 None:intergenic 50.0%
ACGTTCGACTAAGCTGTTGG+GGG - Chr3:73219859-73219878 None:intergenic 50.0%
AGACACCACTGCTAGCACAA+TGG - Chr3:73220400-73220419 None:intergenic 50.0%
ATTGTGCTAGCAGTGGTGTC+TGG + Chr3:73220399-73220418 MsG0380015659.01.T01:CDS 50.0%
CACGTTCGACTAAGCTGTTG+GGG - Chr3:73219860-73219879 None:intergenic 50.0%
CCACGTTCGACTAAGCTGTT+GGG - Chr3:73219861-73219880 None:intergenic 50.0%
CCCACAGAATGGAAGAGGTT+AGG - Chr3:73220109-73220128 None:intergenic 50.0%
CTCTTCCATTCTGTGGGCTT+GGG + Chr3:73220112-73220131 MsG0380015659.01.T01:intron 50.0%
GAAAGCGACGATGTTGATCC+CGG - Chr3:73220080-73220099 None:intergenic 50.0%
GCTGCAGGCTGCATAAACTA+CGG + Chr3:73219738-73219757 MsG0380015659.01.T01:intron 50.0%
GGAGCCTTCTTGTTCTATGC+TGG + Chr3:73220655-73220674 MsG0380015659.01.T01:three_prime_UTR 50.0%
GGTGACTTTGCTAGCTGCAA+GGG - Chr3:73219222-73219241 None:intergenic 50.0%
GGTGCCCTCTTTATTGTTGG+TGG + Chr3:73219278-73219297 MsG0380015659.01.T01:CDS 50.0%
GGTGGTGCCCTCTTTATTGT+TGG + Chr3:73219275-73219294 MsG0380015659.01.T01:CDS 50.0%
GTTTCTTCGACCATACCACG+CGG - Chr3:73219243-73219262 None:intergenic 50.0%
TGTGTCCATTGTGCTAGCAG+TGG + Chr3:73220392-73220411 MsG0380015659.01.T01:CDS 50.0%
! ACATGCATCGTTGCTGCTTC+CGG + Chr3:73218891-73218910 MsG0380015659.01.T01:CDS 50.0%
! GCTTCCGGTGGTCTTCTTTT+TGG + Chr3:73218906-73218925 MsG0380015659.01.T01:CDS 50.0%
! GTATCGACCTCACTTGGTGA+TGG + Chr3:73220024-73220043 MsG0380015659.01.T01:intron 50.0%
!! TAAAAGCGCCTCGCCATTTG+GGG - Chr3:73219681-73219700 None:intergenic 50.0%
!! TGGCGAGGCGCTTTTAATAC+CGG + Chr3:73219685-73219704 MsG0380015659.01.T01:intron 50.0%
!!! TGCTGGTTTTGGTTGGTCGT+GGG + Chr3:73220491-73220510 MsG0380015659.01.T01:CDS 50.0%
AATTGCTCCCCCAAATGGCG+AGG + Chr3:73219670-73219689 MsG0380015659.01.T01:intron 55.0%
AGCAAAGTCACCGCGTGGTA+TGG + Chr3:73219230-73219249 MsG0380015659.01.T01:CDS 55.0%
CATGTCCCAAGCCCACAGAA+TGG - Chr3:73220120-73220139 None:intergenic 55.0%
CCAAGCCCACAGAATGGAAG+AGG - Chr3:73220114-73220133 None:intergenic 55.0%
CCCAACAGCTTAGTCGAACG+TGG + Chr3:73219858-73219877 MsG0380015659.01.T01:intron 55.0%
CCTCTTCCATTCTGTGGGCT+TGG + Chr3:73220111-73220130 MsG0380015659.01.T01:intron 55.0%
CGGTGACTTTGCTAGCTGCA+AGG - Chr3:73219223-73219242 None:intergenic 55.0%
GATACAATGGTGCGGCCTGT+TGG - Chr3:73219643-73219662 None:intergenic 55.0%
GCGAATGCCATCACCAAGTG+AGG - Chr3:73220034-73220053 None:intergenic 55.0%
TCTCCATCCCCATGTGTGCT+TGG - Chr3:73219769-73219788 None:intergenic 55.0%
TCTGTGGGCTTGGGACATGA+TGG + Chr3:73220121-73220140 MsG0380015659.01.T01:intron 55.0%
TGGGGATGGAGACTCTCTCT+TGG + Chr3:73219777-73219796 MsG0380015659.01.T01:intron 55.0%
! GCAGTGGTGTCTGGTGTTGA+TGG + Chr3:73220408-73220427 MsG0380015659.01.T01:CDS 55.0%
!! AAAAGCGCCTCGCCATTTGG+GGG - Chr3:73219680-73219699 None:intergenic 55.0%
!! TGTTGGGGGTGTCCGTTATG+AGG - Chr3:73219845-73219864 None:intergenic 55.0%
!!! CTGCTGGTTTTGGTTGGTCG+TGG + Chr3:73220490-73220509 MsG0380015659.01.T01:CDS 55.0%
!!! GCTGGTTTTGGTTGGTCGTG+GGG + Chr3:73220492-73220511 MsG0380015659.01.T01:CDS 55.0%
CAGCTAGCAAAGTCACCGCG+TGG + Chr3:73219225-73219244 MsG0380015659.01.T01:CDS 60.0%
CCATCCCCATGTGTGCTTGG+CGG - Chr3:73219766-73219785 None:intergenic 60.0%
! GGCTGGTGGGGTATTTGCTG+TGG + Chr3:73218809-73218828 MsG0380015659.01.T01:CDS 60.0%
! TGCATCGTTGCTGCTTCCGG+TGG + Chr3:73218894-73218913 MsG0380015659.01.T01:CDS 60.0%
!! GGAGTTGGTGTAGTCGCTGC+AGG + Chr3:73219723-73219742 MsG0380015659.01.T01:intron 60.0%
!! GGGGGTGTCCGTTATGAGGA+AGG - Chr3:73219841-73219860 None:intergenic 60.0%
ACGGCACCGCCAAGCACACA+TGG + Chr3:73219757-73219776 MsG0380015659.01.T01:intron 65.0%
CCGCCAAGCACACATGGGGA+TGG + Chr3:73219763-73219782 MsG0380015659.01.T01:intron 65.0%
CGGCACCGCCAAGCACACAT+GGG + Chr3:73219758-73219777 MsG0380015659.01.T01:intron 65.0%
GGCACCGCCAAGCACACATG+GGG + Chr3:73219759-73219778 MsG0380015659.01.T01:intron 65.0%
GGTCGTGGGGCCCTCTAACA+TGG + Chr3:73220505-73220524 MsG0380015659.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 73218807 73221059 73218807 ID=MsG0380015659.01;Name=MsG0380015659.01
Chr3 mRNA 73218807 73221059 73218807 ID=MsG0380015659.01.T01;Parent=MsG0380015659.01;Name=MsG0380015659.01.T01;_AED=0.46;_eAED=0.46;_QI=0|0.5|1|1|1|1|3|409|241
Chr3 exon 73218807 73218948 73218807 ID=MsG0380015659.01.T01:exon:14099;Parent=MsG0380015659.01.T01
Chr3 exon 73219066 73219385 73219066 ID=MsG0380015659.01.T01:exon:14100;Parent=MsG0380015659.01.T01
Chr3 exon 73220387 73221059 73220387 ID=MsG0380015659.01.T01:exon:14101;Parent=MsG0380015659.01.T01
Chr3 CDS 73218807 73218948 73218807 ID=MsG0380015659.01.T01:cds;Parent=MsG0380015659.01.T01
Chr3 CDS 73219066 73219385 73219066 ID=MsG0380015659.01.T01:cds;Parent=MsG0380015659.01.T01
Chr3 CDS 73220387 73220650 73220387 ID=MsG0380015659.01.T01:cds;Parent=MsG0380015659.01.T01
Chr3 three_prime_UTR 73220651 73221059 73220651 ID=MsG0380015659.01.T01:three_prime_utr;Parent=MsG0380015659.01.T01
Gene Sequence

>MsG0380015659.01.T01

ATGGCTGGTGGGGTATTTGCTGTGGATAGTACACCAGATGCTGCCATCAATATTGGTGGCAAGATAACACTCTCAATCATCATTACATGCATCGTTGCTGCTTCCGGTGGTCTTCTTTTTGGATATGACATTGGAATTTCAGGAGGTGTTACAACGATGGTGCCCTTTCTTCAAAAATTCTTTCCAGATATTTTAAGGAAGGCAGCTGGTGCTGAAGTGAATATGTATTGTGTGTATGATAGTCAAACATTGACATTATTTACGTCTTCTCTTTATCTAGCTGGATTAGTGTCATCCCTTGCAGCTAGCAAAGTCACCGCGTGGTATGGTCGAAGAAACGTCATCATAATAGGTGGTGCCCTCTTTATTGTTGGTGGTGCTATTAATGGTGGTTCGGAAAATATTCCCATGCTCATTTTGGGTCGTGTTTTTCTTGGGTTTGGGGTCGGTTTCACTAATCAAATTGCTGTGTCCATTGTGCTAGCAGTGGTGTCTGGTGTTGATGGTACAAATGACATATCCAAGGGGAATGCAATATTAGTATTGGTGCTATTATGTTTATACTCTGCTGGTTTTGGTTGGTCGTGGGGCCCTCTAACATGGCTTATTCCAAGTGAGATTTTCCCTGTAAATATAAGAACCACAGGACAAAGCATAGCTATTGCTATACAGTTCATAATAGTTTGTGCTATCACAAACATTCTTGACAATGTTATGTCACTTTAA

Protein sequence

>MsG0380015659.01.T01

MAGGVFAVDSTPDAAINIGGKITLSIIITCIVAASGGLLFGYDIGISGGVTTMVPFLQKFFPDILRKAAGAEVNMYCVYDSQTLTLFTSSLYLAGLVSSLAASKVTAWYGRRNVIIIGGALFIVGGAINGGSENIPMLILGRVFLGFGVGFTNQIAVSIVLAVVSGVDGTNDISKGNAILVLVLLCLYSAGFGWSWGPLTWLIPSEIFPVNIRTTGQSIAIAIQFIIVCAITNILDNVMSL*