AlfalfaGEDB | MsG0580029937.01

M. sativa cultivar ZhongmuNo.1 / MsG0580029937.01

KEGG: -
GO: GO:0005506 GO:0016705 GO:0020037 GO:0055114
PFAM: PF00067

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580029937.01.T01	AET00724.1	90.456	482	31	1	31	512	6	472	0	896

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580029937.01.T01	O22307	53.233	464	209	2	52	507	18	481	6.50E-175	504

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580029937.01.T01	G7K4K8	90.456	482	31	1	31	512	6	472	0.0	896

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048134.01	MsG0580029937.01	0.828912	6.906537e-55	6.959592e-52
MsG0080048506.01	MsG0580029937.01	0.823579	1.283616e-53	1.109665e-50
MsG0180000029.01	MsG0580029937.01	0.813850	2.076831e-51	1.371483e-48
MsG0180000549.01	MsG0580029937.01	-0.815248	1.018809e-51	6.987208e-49
MsG0180001029.01	MsG0580029937.01	0.832194	1.086120e-55	1.205204e-52
MsG0180001797.01	MsG0580029937.01	0.804532	2.065074e-49	1.067289e-46
MsG0180001800.01	MsG0580029937.01	0.808588	2.876647e-50	1.651210e-47
MsG0180002255.01	MsG0580029937.01	0.804424	2.174799e-49	1.120879e-46
MsG0180003237.01	MsG0580029937.01	0.818909	1.532858e-52	1.162517e-49
MsG0180003320.01	MsG0580029937.01	0.851359	9.342655e-61	1.886416e-57

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580029937.01.T01	MTR_5g095220	90.456	482	31	1	31	512	6	472	0.0	896
MsG0580029937.01.T01	MTR_5g095290	74.251	501	126	3	14	511	1	501	0.0	769
MsG0580029937.01.T01	MTR_5g095260	72.709	502	133	3	14	511	1	502	0.0	751
MsG0580029937.01.T01	MTR_6g035115	69.014	497	147	4	18	511	6	498	0.0	684
MsG0580029937.01.T01	MTR_2g010530	70.208	480	136	4	36	512	21	496	0.0	677
MsG0580029937.01.T01	MTR_5g094840	54.167	504	222	6	17	512	7	509	0.0	525
MsG0580029937.01.T01	MTR_3g058210	51.606	498	226	5	24	511	12	504	0.0	518
MsG0580029937.01.T01	MTR_3g058220	50.297	505	230	6	23	512	5	503	1.24e-177	509
MsG0580029937.01.T01	MTR_3g058110	48.996	498	241	4	21	508	9	503	1.05e-176	507
MsG0580029937.01.T01	MTR_1g035140	50.402	498	230	6	21	507	6	497	2.08e-175	503

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580029937.01.T01	AT3G26320	40.043	467	269	7	54	510	32	497	1.30e-121	366
MsG0580029937.01.T01	AT3G26330	40.471	467	267	7	54	510	32	497	1.17e-120	363
MsG0580029937.01.T01	AT3G26310	38.934	488	284	8	30	507	10	493	3.63e-120	362
MsG0580029937.01.T01	AT3G26300	40.471	467	267	7	54	510	32	497	5.94e-118	357
MsG0580029937.01.T01	AT3G48310	37.581	463	285	4	46	506	25	485	2.68e-117	355
MsG0580029937.01.T01	AT3G48290	37.953	469	285	5	40	506	22	486	4.97e-112	341
MsG0580029937.01.T01	AT5G57260	39.659	469	268	8	54	508	31	498	5.55e-112	341
MsG0580029937.01.T01	AT3G48280	36.739	460	286	5	54	510	31	488	1.12e-111	340
MsG0580029937.01.T01	AT5G25120	38.153	498	291	8	19	508	3	491	1.80e-111	340
MsG0580029937.01.T01	AT5G24950	37.076	472	280	10	48	507	27	493	5.02e-111	338

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Find 98 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAATGATGGCACATT+TGG	0.338636	5:-104223571	MsG0580029937.01.T01:CDS
AAAACCCTAGAATATTGAAA+AGG	0.446958	5:-104221949	MsG0580029937.01.T01:CDS
AAAAGGTAAGAAATCAAAAT+TGG	0.288367	5:+104221631	None:intergenic
AAACCCTAGAATATTGAAAA+GGG	0.484355	5:-104221948	MsG0580029937.01.T01:CDS
AAAGATGAGAGCTCTCAAAT+TGG	0.358468	5:-104223037	MsG0580029937.01.T01:CDS
AAAGCAACAACAAAGACCAG+TGG	0.629018	5:-104223094	MsG0580029937.01.T01:CDS
AAGACTTACCTTTCCAAATG+GGG	0.578373	5:-104223882	MsG0580029937.01.T01:CDS
AAGCTATAATTTCTGCACCA+AGG	0.639521	5:+104223533	None:intergenic
AAGTCTTGTTTGATTAAAGG+AGG	0.574867	5:+104223898	None:intergenic
AATAATGGCTTTAATGTTGT+TGG	0.427655	5:+104223000	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACAAATGATGGCACATT+TGG	-	Chr5:104221763-104221782	MsG0580029937.01.T01:CDS	30.0%
AAATGGGGGATAATTTCTTA+TGG	-	Chr5:104221467-104221486	MsG0580029937.01.T01:CDS	30.0%
AAATTGTGTGAGAGAAAAGT+TGG	-	Chr5:104222928-104222947	MsG0580029937.01.T01:intron	30.0%
ACATGTGTTAGTGAATACAT+GGG	-	Chr5:104223593-104223612	MsG0580029937.01.T01:CDS	30.0%
AGAGAATTGTCCCAAAAATA+TGG	-	Chr5:104221664-104221683	MsG0580029937.01.T01:CDS	30.0%
AGCATTTATCTTGTTCATCA+AGG	-	Chr5:104222077-104222096	MsG0580029937.01.T01:intron	30.0%
AGTCAATTGCACACATATTA+AGG	-	Chr5:104222820-104222839	MsG0580029937.01.T01:intron	30.0%
ATAAGAAATTATCCCCCATT+TGG	+	Chr5:104221468-104221487	None:intergenic	30.0%
ATCAACTACAACTATGGAAT+GGG	-	Chr5:104223344-104223363	MsG0580029937.01.T01:CDS	30.0%
ATTGCACACATATTAAGGAA+TGG	-	Chr5:104222825-104222844	MsG0580029937.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	104221430	104223926	104221430	ID=MsG0580029937.01;Name=MsG0580029937.01
Chr5	mRNA	104221430	104223926	104221430	ID=MsG0580029937.01.T01;Parent=MsG0580029937.01;Name=MsG0580029937.01.T01;_AED=0.31;_eAED=0.31;_QI=0\|0\|0\|1\|1\|1\|2\|0\|512
Chr5	exon	104222997	104223926	104222997	ID=MsG0580029937.01.T01:exon:15184;Parent=MsG0580029937.01.T01
Chr5	exon	104221430	104222038	104221430	ID=MsG0580029937.01.T01:exon:15183;Parent=MsG0580029937.01.T01
Chr5	CDS	104222997	104223926	104222997	ID=MsG0580029937.01.T01:cds;Parent=MsG0580029937.01.T01
Chr5	CDS	104221430	104222038	104221430	ID=MsG0580029937.01.T01:cds;Parent=MsG0580029937.01.T01

Gene Sequence

>MsG0580029937.01.T01

ATGTGTCCTCCTTTAATCAAACAAGACTTACCTTTCCAAATGGGGGATAATTTCTTATGGTTCTCCATCTTGAGTCTCACCCTCTCAATGTTTTTTATCCTAAAAGTAGGCGAGAGATTCAAAAGTAAAAGCAGCGAAAAAATTACCTCAAATAATCTTCCTCCAGGGCCTTGGAAGCTACCAATTTTTGGAAGCATACATCACTTGATTGGCTCCCTACCCCACCAGAGAATGAGAGAATTGTCCCAAAAATATGGCCCTCTCATGCACCTAAAACTTGGAGAAACTTCAACTATAGTGGTCTCTTCTAAAGAAATTGCCAAAGTGGTGATGAAAACAAATGATGGCACATTTGGTCAAAGACCTCGTTTCCTTGGTGCAGAAATTATAGCTTATGGTAGCACTAGTATTTTCTTTTCACCTGCTGGAGACTATTGGAGGAATATAAGAAAAATATGCACATTGGAGTTGTTGAGTGCTAAACGTGTGAAATCATTCCAATCAATTCGAGAGGAGGAGTTGTCAAAATTAATAAGATATATTTCTATAAACACTGGATCTACTATCAACCTTACAGATGAAATATCATCTATGACATATAACATCATTTCAAGGGCAACTTTTGGTGATAAATGCAATGATCAAGAAGCATTTATCTTGTTCATCAAGGAATGTACAAGGGTGGTTGAGAGTCTCAATATCCCTAATTTGTTTCCCTCTCAACATTGGCTACATGTGATTAGTGGAATGGTACATAAATTGAAGACAATGCATAGAAGTGGTGATATGGTTCTTGAAAGAATCATCAACAAAGCAACAACAAAGACCAGTGGAGATGGAAGCCTTCTATCTTGCCTTTTGAATCTCAAAGATGAGAGCTCTCAAATTGGATTTGATTTGACAACCAACAACATTAAAGCCATTATTCAGGATATTATTATTGGTGGAAGTGAGCCATCAACTACAACTATGGAATGGGCCTTCTCAGAAATGCTGAAAAACCCTAGAATATTGAAAAGGGCTCAAGAAGAAGTTAGACATGCTTGTGGTAGCAGAGGATATGTTGATGAAAAAGACCTTGAAGAACTGAAATTTCTAAAAGCAGTTATTAAAGAAACCTTCAGACTGCATCCTCCTAATCCTTTACTTCTAAGAGAGTGTGCTGAAACTTGTGAGATAAATGGATACACAATACCGGCCGGAACACATGTGTTAGTGAATACATGGGCAATTGCAAGAGACCAAAAAAATTGGAGTGATGGAGACAAGTTTTATCCTGAGAGGTTCTTGGATTCTCCAATTGATTACAAAGGATCCAATTTTGATTTCTTACCTTTTGGTGCAGGAAAGAGAATGTGTCCTGGCATTTTGTTTGCTACACCTACAGTAGAACTTCCTCTTGCACAGTTGTTATATTATTTTGATTGGCAATTACCATTTGGAATCAGCCATGAAAATCTTGACATGACTGAAGCCTTTGGCAGTATAGCCAAAAAGAAAAGTGAGCTATTTGTAATTCCAATTCCGTACAATCATTAA

Protein sequence

>MsG0580029937.01.T01

MCPPLIKQDLPFQMGDNFLWFSILSLTLSMFFILKVGERFKSKSSEKITSNNLPPGPWKLPIFGSIHHLIGSLPHQRMRELSQKYGPLMHLKLGETSTIVVSSKEIAKVVMKTNDGTFGQRPRFLGAEIIAYGSTSIFFSPAGDYWRNIRKICTLELLSAKRVKSFQSIREEELSKLIRYISINTGSTINLTDEISSMTYNIISRATFGDKCNDQEAFILFIKECTRVVESLNIPNLFPSQHWLHVISGMVHKLKTMHRSGDMVLERIINKATTKTSGDGSLLSCLLNLKDESSQIGFDLTTNNIKAIIQDIIIGGSEPSTTTMEWAFSEMLKNPRILKRAQEEVRHACGSRGYVDEKDLEELKFLKAVIKETFRLHPPNPLLLRECAETCEINGYTIPAGTHVLVNTWAIARDQKNWSDGDKFYPERFLDSPIDYKGSNFDFLPFGAGKRMCPGILFATPTVELPLAQLLYYFDWQLPFGISHENLDMTEAFGSIAKKKSELFVIPIPYNH*