AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480018629.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018629.01.T01 MTR_4g015590 90.040 251 7 1 46 296 20 252 6.77e-165 458
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018629.01.T01 AT5G60540 66.275 255 64 2 46 296 19 255 3.19e-119 343

Find 78 sgRNAs with CRISPR-Local

Find 418 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGACTTTCTTTAACGATTA+TGG 0.140129 4:-7760922 MsG0480018629.01.T01:three_prime_UTR
TGTTTCAATTTATCAGTTTC+CGG 0.231284 4:-7764786 MsG0480018629.01.T01:CDS
TTCCTCTGTTGAAGATAAAA+AGG 0.242812 4:-7763402 MsG0480018629.01.T01:intron
AAAACTCCACGGAATGTTTC+AGG 0.263425 4:+7763515 None:intergenic
TGCAAATGGGAAAGCCAGTT+TGG 0.304726 4:-7764748 MsG0480018629.01.T01:CDS
CAACCCACCTGTAGCTTTAT+CGG 0.305466 4:+7764697 None:intergenic
AGGGATGATTAAGGAATTAA+TGG 0.307293 4:+7765585 None:intergenic
CGAGTATCAGCTGTCAATTC+AGG 0.312317 4:+7761170 None:intergenic
TTCACCACCAGGGATGATTA+AGG 0.317717 4:+7765576 None:intergenic
GGCCCTACGTCAATAATTGC+TGG 0.323344 4:+7763482 None:intergenic
CGCTACTCGAGGCCTCTTCT+CGG 0.359298 4:+7761022 None:intergenic
CGACCTTCCTATCTTTCAAT+AGG 0.362563 4:-7760953 MsG0480018629.01.T01:exon
CTTGCGAGAGTTTGTGCAAA+TGG 0.368937 4:-7764762 MsG0480018629.01.T01:CDS
TTAATGGTGAGAAGCTGTTC+TGG 0.370042 4:+7765601 None:intergenic
TTAATTTATAAAATTTCCTT+TGG 0.376440 4:-7760892 MsG0480018629.01.T01:three_prime_UTR
GCAAATGGGAAAGCCAGTTT+GGG 0.378446 4:-7764747 MsG0480018629.01.T01:CDS
GCATAGTTATTTCTTGAAGA+TGG 0.389396 4:-7761055 MsG0480018629.01.T01:CDS
CCTGCACAGGTTCCCCAAAC+TGG 0.397058 4:+7764734 None:intergenic
ATCAAATCAGGTCATGATTC+TGG 0.398017 4:-7764834 MsG0480018629.01.T01:intron
TGTTTCAGGACCACCTTCCT+TGG 0.406689 4:+7763529 None:intergenic
TCAGCTAGGACTTGAACTTC+TGG 0.407051 4:+7763461 None:intergenic
TTATAATGATCGATTATCAA+TGG 0.410738 4:+7760706 None:intergenic
ACTGTGCACAGGAATTTCTT+TGG 0.415918 4:-7764321 MsG0480018629.01.T01:CDS
GTGTGGTCCTATTGAAAGAT+AGG 0.418750 4:+7760946 None:intergenic
CAGGAATTTCTTTGGCAGCC+AGG 0.427750 4:-7764313 MsG0480018629.01.T01:intron
TTATTTGTACTCACTTCTGC+TGG 0.435763 4:+7760994 None:intergenic
GAACAATTTCAGCAGAGGTT+TGG 0.439088 4:+7767056 None:intergenic
CATAGTTATTTCTTGAAGAT+GGG 0.447901 4:-7761054 MsG0480018629.01.T01:CDS
TCTAAGATCTAACGATTCTC+AGG 0.452628 4:+7760861 None:intergenic
CCAGTTTGGGGAACCTGTGC+AGG 0.461068 4:-7764734 MsG0480018629.01.T01:CDS
TGGTGGTGAAAGCACCACTA+TGG 0.467220 4:-7765563 MsG0480018629.01.T01:CDS
GCCCTACGTCAATAATTGCT+GGG 0.475950 4:+7763483 None:intergenic
TGCACAAACTCTCGCAAGGC+CGG 0.486422 4:+7764767 None:intergenic
TTGCGAGAGTTTGTGCAAAT+GGG 0.487972 4:-7764761 MsG0480018629.01.T01:CDS
TCAGATTCAAAGCTTTGAAA+CGG 0.493128 4:-7763576 MsG0480018629.01.T01:intron
CCTTCCTTGGAGACGAGCTC+AGG 0.500108 4:+7763542 None:intergenic
TTAAGAAGATTGGGTGTGAA+AGG 0.500188 4:-7765640 MsG0480018629.01.T01:CDS
CAAATCAGATACAGACTCAA+TGG 0.512761 4:+7766979 None:intergenic
TTCCTGGCCGATAAAGCTAC+AGG 0.513201 4:-7764704 MsG0480018629.01.T01:intron
GCTACTCGAGGCCTCTTCTC+GGG 0.516139 4:+7761023 None:intergenic
ATTAATTCCTTAATCATCCC+TGG 0.517436 4:-7765583 MsG0480018629.01.T01:CDS
CACCTGTAGCTTTATCGGCC+AGG 0.518373 4:+7764702 None:intergenic
ATAGTGGTGCTTTCACCACC+AGG 0.540919 4:+7765565 None:intergenic
TTCTCAGGTAATGTTTCCAA+AGG 0.545151 4:+7760876 None:intergenic
TTCAGCGAGTTTAGCCATAG+TGG 0.547805 4:+7765549 None:intergenic
GTTATAGTTGCTGTGCGACA+AGG 0.550991 4:-7761218 MsG0480018629.01.T01:CDS
GTTCAATACACATTGCAGCT+TGG 0.560374 4:+7760639 None:intergenic
CAGGAAAATTAGTCCTGCAC+AGG 0.560529 4:+7764721 None:intergenic
CCTGAGCTCGTCTCCAAGGA+AGG 0.574869 4:-7763542 MsG0480018629.01.T01:CDS
GACTTGATTGCACTGTGCAC+AGG 0.576833 4:-7764332 MsG0480018629.01.T01:CDS
CCCCAGCAATTATTGACGTA+GGG 0.577921 4:-7763484 MsG0480018629.01.T01:CDS
ACTGGTGGACAAGAACTTGT+TGG 0.583767 4:-7764357 MsG0480018629.01.T01:CDS
GGTGGACAAGAACTTGTTGG+TGG 0.593412 4:-7764354 MsG0480018629.01.T01:CDS
CATGATTCAGGACAGAAGAC+TGG 0.593952 4:-7764375 MsG0480018629.01.T01:intron
ACCACTCTGACAGAAGGTAC+AGG 0.595464 4:+7763434 None:intergenic
ATGCAGAACAATTTCAGCAG+AGG 0.597630 4:+7767051 None:intergenic
TGTGCGACAAGGGAACATAC+TGG 0.599628 4:-7761207 MsG0480018629.01.T01:CDS
AGTACCTGAGCTCGTCTCCA+AGG 0.600137 4:-7763546 MsG0480018629.01.T01:CDS
GGGAAATGTGACCCGAGAAG+AGG 0.603767 4:-7761034 MsG0480018629.01.T01:CDS
CATTTGCACAAACTCTCGCA+AGG 0.605186 4:+7764763 None:intergenic
TTATAGTTGCTGTGCGACAA+GGG 0.613272 4:-7761217 MsG0480018629.01.T01:CDS
AAGGTACAGGATAATCAGCT+AGG 0.622940 4:+7763447 None:intergenic
TGCTGGAACAACGCTACTCG+AGG 0.626381 4:+7761011 None:intergenic
GAACTCACCACTCTGACAGA+AGG 0.638360 4:+7763428 None:intergenic
ACTCGCTGAATATTTCAACC+TGG 0.638716 4:-7765536 MsG0480018629.01.T01:intron
TCCTGTACCTTCTGTCAGAG+TGG 0.641284 4:-7763435 MsG0480018629.01.T01:CDS
CGTTAAAGAAAGTCATAGTG+TGG 0.642783 4:+7760929 None:intergenic
GGTCCTATTGAAAGATAGGA+AGG 0.645223 4:+7760950 None:intergenic
CCCTACGTCAATAATTGCTG+GGG 0.645849 4:+7763484 None:intergenic
AATTGACAGCTGATACTCGA+TGG 0.647353 4:-7761166 MsG0480018629.01.T01:intron
GAGCTCGTCTCCAAGGAAGG+TGG 0.657634 4:-7763539 MsG0480018629.01.T01:CDS
GCCCCAGCAATTATTGACGT+AGG 0.663150 4:-7763485 MsG0480018629.01.T01:CDS
GATTCAGGACAGAAGACTGG+TGG 0.674164 4:-7764372 MsG0480018629.01.T01:intron
TATGGTATGACAGGAGAATG+CGG 0.675605 4:-7761255 MsG0480018629.01.T01:intron
GGTGGTCCTGAAACATTCCG+TGG 0.679473 4:-7763521 MsG0480018629.01.T01:CDS
AATTCCTTAATCATCCCTGG+TGG 0.708340 4:-7765580 MsG0480018629.01.T01:CDS
TAGTGGTGCTTTCACCACCA+GGG 0.725360 4:+7765566 None:intergenic
CAAATGGGAAAGCCAGTTTG+GGG 0.735805 4:-7764746 MsG0480018629.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+TGG + Chr4:7764958-7764939 None:intergenic 0.0%
!! AAAAGAAAAAAAAAAAGTTT+CGG + Chr4:7761436-7761455 None:intergenic 10.0%
!! ACTATTAATAAAATATAAGA+TGG + Chr4:7764453-7764472 None:intergenic 10.0%
!! TTAATTTATAAAATTTCCTT+TGG - Chr4:7766805-7766824 MsG0480018629.01.T01:intron 10.0%
!! TTATAATGTTATATGATATA+TGG - Chr4:7766590-7766609 MsG0480018629.01.T01:intron 10.0%
!!! AATATGTTTCTAAATATATA+TGG - Chr4:7766424-7766443 MsG0480018629.01.T01:intron 10.0%
!!! ATTACTTATATTTTATCATA+TGG - Chr4:7762632-7762651 MsG0480018629.01.T01:intron 10.0%
!!! CTTATATTTTATTAATAGTA+TGG - Chr4:7764454-7764473 MsG0480018629.01.T01:intron 10.0%
!!! GTTATAGATAAATTATTTTT+AGG - Chr4:7765238-7765257 MsG0480018629.01.T01:intron 10.0%
!!! TGTTTAGATAAATTATTTTA+AGG - Chr4:7765267-7765286 MsG0480018629.01.T01:intron 10.0%
!!! TTTTATTTTGTTTCATTAAT+AGG - Chr4:7763513-7763532 MsG0480018629.01.T01:CDS 10.0%
!! AAAATGTTAAAAGTAAATGA+AGG + Chr4:7762016-7762035 None:intergenic 15.0%
!! AATAAGTATATATACAAAAC+AGG + Chr4:7765342-7765361 None:intergenic 15.0%
!! AGAAATTAAAAGAAGAATAA+AGG - Chr4:7764764-7764783 MsG0480018629.01.T01:CDS 15.0%
!! ATAATCAATCAATAAATCAA+AGG + Chr4:7763563-7763582 None:intergenic 15.0%
!! TAAGTGATATAATATTTCTT+AGG - Chr4:7762541-7762560 MsG0480018629.01.T01:intron 15.0%
!! TAGTAAATATCTTATCATTT+AGG - Chr4:7763631-7763650 MsG0480018629.01.T01:intron 15.0%
!!! AAAAACAATGTTTTAAATTG+AGG + Chr4:7763192-7763211 None:intergenic 15.0%
!!! AGAAAGTTTAATATTCTTTT+TGG - Chr4:7766859-7766878 MsG0480018629.01.T01:intron 15.0%
!!! ATATAACATTATAACTTGTA+AGG + Chr4:7766584-7766603 None:intergenic 15.0%
!!! GAAAGTTTAATATTCTTTTT+GGG - Chr4:7766860-7766879 MsG0480018629.01.T01:intron 15.0%
!! AAAATCGTATCAAAATCTAT+AGG - Chr4:7761379-7761398 MsG0480018629.01.T01:intron 20.0%
!! AAACCACTTAACTATAAAAA+TGG - Chr4:7765960-7765979 MsG0480018629.01.T01:intron 20.0%
!! AAATCGTATCAAAATCTATA+GGG - Chr4:7761380-7761399 MsG0480018629.01.T01:intron 20.0%
!! AAATTGAGATTATTTATACC+AGG + Chr4:7762182-7762201 None:intergenic 20.0%
!! AGAAATGCATATTAATTCTA+AGG + Chr4:7762291-7762310 None:intergenic 20.0%
!! ATTACACAGAAAATTGTTTA+AGG + Chr4:7760781-7760800 None:intergenic 20.0%
!! GTAAAAAAGAATAAGAGAAA+CGG + Chr4:7763485-7763504 None:intergenic 20.0%
!! TAGAAACATATTATATGTCA+TGG + Chr4:7766416-7766435 None:intergenic 20.0%
!! TGATAAGATATTTACTAACA+AGG + Chr4:7763628-7763647 None:intergenic 20.0%
!! TGTCAATAAATTCATACTAT+CGG + Chr4:7761649-7761668 None:intergenic 20.0%
!! TTAAAATCAACTGGAAAAAA+GGG - Chr4:7762458-7762477 MsG0480018629.01.T01:intron 20.0%
!! TTATAATGATCGATTATCAA+TGG + Chr4:7766994-7767013 None:intergenic 20.0%
!!! ATTTTTTTTATTGACGTGAT+TGG + Chr4:7761804-7761823 None:intergenic 20.0%
!!! GTAACAGTAAACATTTTTAT+GGG + Chr4:7765400-7765419 None:intergenic 20.0%
!!! TAGGTTTTTGAATAATCTTA+TGG - Chr4:7762333-7762352 MsG0480018629.01.T01:intron 20.0%
!!! TATTGTTCTAAATGAAATTC+CGG - Chr4:7764057-7764076 MsG0480018629.01.T01:intron 20.0%
!!! TTCAAATGTTATATTTTTGC+AGG - Chr4:7766620-7766639 MsG0480018629.01.T01:intron 20.0%
!!! TTGTAATTTTATAACTTCTC+AGG - Chr4:7764390-7764409 MsG0480018629.01.T01:intron 20.0%
!!! TTTTGGGATATAGTATATAT+TGG - Chr4:7766876-7766895 MsG0480018629.01.T01:intron 20.0%
!!! TTTTTTTTATTGACGTGATT+GGG + Chr4:7761803-7761822 None:intergenic 20.0%
! AAAATAGTCGAATATTATGG+TGG - Chr4:7762719-7762738 MsG0480018629.01.T01:intron 25.0%
! AAAGCATAAATGTTCGATAA+AGG + Chr4:7765998-7766017 None:intergenic 25.0%
! AAAGTAGTTAAATACTATGG+TGG - Chr4:7762677-7762696 MsG0480018629.01.T01:intron 25.0%
! AAATGAAGGAATGAGAAAAT+TGG + Chr4:7762002-7762021 None:intergenic 25.0%
! AACTAAGTTATTATATCCAG+TGG + Chr4:7766374-7766393 None:intergenic 25.0%
! ACAGCATATATATACTACAT+TGG + Chr4:7765751-7765770 None:intergenic 25.0%
! ACGGAAATAAAATATAAAGC+TGG + Chr4:7763466-7763485 None:intergenic 25.0%
! ACTGCTAATAACTAACAAAA+GGG + Chr4:7763659-7763678 None:intergenic 25.0%
! ATGACTTTCTTTAACGATTA+TGG - Chr4:7766775-7766794 MsG0480018629.01.T01:intron 25.0%
! ATGTTATATGATATATGGAG+TGG - Chr4:7766595-7766614 MsG0480018629.01.T01:intron 25.0%
! ATTTCTTAAACTAGCAAGAA+TGG - Chr4:7765776-7765795 MsG0480018629.01.T01:intron 25.0%
! CAAAACTAGTTAAAATCAAC+TGG - Chr4:7762449-7762468 MsG0480018629.01.T01:intron 25.0%
! CTAAATATATATGGTATGAC+AGG - Chr4:7766433-7766452 MsG0480018629.01.T01:intron 25.0%
! GAAACAAATAAAAATGACAC+AGG + Chr4:7767030-7767049 None:intergenic 25.0%
! GACAAAATAGTCGAATATTA+TGG - Chr4:7762716-7762735 MsG0480018629.01.T01:intron 25.0%
! GACAAAGTAGTTAAATACTA+TGG - Chr4:7762674-7762693 MsG0480018629.01.T01:intron 25.0%
! GCAAACAAGTTTAGATTAAA+TGG + Chr4:7765868-7765887 None:intergenic 25.0%
! GTATATATACTTATTCTCCT+TGG - Chr4:7765347-7765366 MsG0480018629.01.T01:intron 25.0%
! GTTAAAATCAACTGGAAAAA+AGG - Chr4:7762457-7762476 MsG0480018629.01.T01:intron 25.0%
! TACTGATATACTTCACTATT+AGG - Chr4:7765473-7765492 MsG0480018629.01.T01:intron 25.0%
! TACTGCTAATAACTAACAAA+AGG + Chr4:7763660-7763679 None:intergenic 25.0%
! TATAAGACTGGAAATTTACA+AGG + Chr4:7765422-7765441 None:intergenic 25.0%
! TATTGGACTTAACCAATAAA+AGG + Chr4:7763598-7763617 None:intergenic 25.0%
! TGAAAAGAGTTGTAGAAAAA+TGG - Chr4:7765209-7765228 MsG0480018629.01.T01:intron 25.0%
! TGAGTAAAAAAAAACCAACT+CGG + Chr4:7765090-7765109 None:intergenic 25.0%
! TGTTTCAATTTATCAGTTTC+CGG - Chr4:7762911-7762930 MsG0480018629.01.T01:intron 25.0%
! TGTTTGTGAATTGAAGTAAT+AGG - Chr4:7764479-7764498 MsG0480018629.01.T01:intron 25.0%
! TTGAAGTAATAGGTTGTAAA+TGG - Chr4:7764489-7764508 MsG0480018629.01.T01:intron 25.0%
! TTTAGATTAAATGGTACATG+TGG + Chr4:7765859-7765878 None:intergenic 25.0%
! TTTGTAGACAGTTACAAATA+CGG + Chr4:7763131-7763150 None:intergenic 25.0%
!! AAAAATAAGGAACTTTTCCA+AGG + Chr4:7765367-7765386 None:intergenic 25.0%
!! AAATTTCCAGTCTTATATGT+TGG - Chr4:7765425-7765444 MsG0480018629.01.T01:intron 25.0%
!! AATTTAAGATCAGTAGAGTT+CGG - Chr4:7764365-7764384 MsG0480018629.01.T01:CDS 25.0%
!! ATTCAACGTTATCCTTTTAT+TGG - Chr4:7763583-7763602 MsG0480018629.01.T01:intron 25.0%
!! ATTGTTCTAAATGAAATTCC+GGG - Chr4:7764058-7764077 MsG0480018629.01.T01:intron 25.0%
!! GATTTTATGATCATCAAATC+AGG - Chr4:7762851-7762870 MsG0480018629.01.T01:intron 25.0%
!! GGTAACAGTAAACATTTTTA+TGG + Chr4:7765401-7765420 None:intergenic 25.0%
!! GTGACATTTAACTATTTTGT+CGG + Chr4:7762759-7762778 None:intergenic 25.0%
!! TAGTTCTTAACTTGAAAAGA+TGG - Chr4:7766019-7766038 MsG0480018629.01.T01:intron 25.0%
!! TATAACTTGTAAGGTTCAAA+CGG + Chr4:7766575-7766594 None:intergenic 25.0%
!!! AAAAAGGTTAGTTTTTGACA+TGG - Chr4:7764311-7764330 MsG0480018629.01.T01:intron 25.0%
!!! AGACCATTTTTATAGTTAAG+TGG + Chr4:7765966-7765985 None:intergenic 25.0%
!!! ATTGCAGTTTTAAGAAGATT+GGG - Chr4:7762048-7762067 MsG0480018629.01.T01:intron 25.0%
!!! CAGTTGATTTTAACTAGTTT+TGG + Chr4:7762451-7762470 None:intergenic 25.0%
!!! CATAGTTATTTCTTGAAGAT+GGG - Chr4:7766643-7766662 MsG0480018629.01.T01:intron 25.0%
!!! CTGTGTAATTTTGTTTAGTT+AGG - Chr4:7760792-7760811 MsG0480018629.01.T01:three_prime_UTR 25.0%
!!! TATTGCAGTTTTAAGAAGAT+TGG - Chr4:7762047-7762066 MsG0480018629.01.T01:intron 25.0%
!!! TCAACTGATCAGTTATTTTT+GGG + Chr4:7764900-7764919 None:intergenic 25.0%
!!! TTTCAGTTTTACTTTTTGAG+TGG - Chr4:7762484-7762503 MsG0480018629.01.T01:intron 25.0%
AAACACAAATGATTGATCAC+AGG + Chr4:7762242-7762261 None:intergenic 30.0%
AAACAGGAAATTTCCACAAT+AGG + Chr4:7765326-7765345 None:intergenic 30.0%
AACACTTGATATACAATCAG+AGG + Chr4:7760755-7760774 None:intergenic 30.0%
AACATCCGATCTTAATTGAA+CGG - Chr4:7761621-7761640 MsG0480018629.01.T01:intron 30.0%
AACGAACATAACATAACAAC+TGG + Chr4:7764684-7764703 None:intergenic 30.0%
AAGTAAATCGATGATTGTTG+TGG + Chr4:7761498-7761517 None:intergenic 30.0%
ACAACATATATGAGATGAGT+TGG + Chr4:7761225-7761244 None:intergenic 30.0%
ACAATTACAATATGCAGACA+CGG + Chr4:7763097-7763116 None:intergenic 30.0%
ACAGCATAAAGAATGAACTA+GGG - Chr4:7764642-7764661 MsG0480018629.01.T01:intron 30.0%
ACATTTGATCGAAGAATTGT+AGG - Chr4:7762314-7762333 MsG0480018629.01.T01:intron 30.0%
ACTAACAAGGAAAGAGATAT+TGG + Chr4:7763615-7763634 None:intergenic 30.0%
ACTGATCTTAAATTCGCAAA+GGG + Chr4:7764359-7764378 None:intergenic 30.0%
AGACTAGAAAAACTATGATC+AGG + Chr4:7766069-7766088 None:intergenic 30.0%
AGAGAAGTAGTTGTATTTGT+TGG + Chr4:7765044-7765063 None:intergenic 30.0%
AGGGATGATTAAGGAATTAA+TGG + Chr4:7762115-7762134 None:intergenic 30.0%
AGTATAGACTTACTTTAGGT+AGG - Chr4:7762607-7762626 MsG0480018629.01.T01:intron 30.0%
ATAAAGAATGAACTAGGGAT+AGG - Chr4:7764647-7764666 MsG0480018629.01.T01:intron 30.0%
ATATACTGCTAATAAAGCCA+CGG - Chr4:7765127-7765146 MsG0480018629.01.T01:intron 30.0%
ATCTGAGTAAACATGTCATT+TGG + Chr4:7764107-7764126 None:intergenic 30.0%
ATTAATTCCTTAATCATCCC+TGG - Chr4:7762114-7762133 MsG0480018629.01.T01:intron 30.0%
CACAGAGTATGATTTCAATT+AGG - Chr4:7761703-7761722 MsG0480018629.01.T01:intron 30.0%
CATTATTACTCTTTCTAACC+TGG + Chr4:7764845-7764864 None:intergenic 30.0%
CTATAATCCCAATAGAAACT+TGG + Chr4:7765172-7765191 None:intergenic 30.0%
GACAAGTATAGACTTACTTT+AGG - Chr4:7762603-7762622 MsG0480018629.01.T01:intron 30.0%
GGTTTCTTCTAACTTAAACA+AGG + Chr4:7763825-7763844 None:intergenic 30.0%
GTAAATGCTCTCAAAATCAT+AGG + Chr4:7761770-7761789 None:intergenic 30.0%
GTAACTGTCTACAAATATCA+TGG - Chr4:7763136-7763155 MsG0480018629.01.T01:intron 30.0%
TAATCAGAATCTAAATGCAG+CGG + Chr4:7761060-7761079 None:intergenic 30.0%
TACATAGTCGAAAACATTAG+TGG - Chr4:7761517-7761536 MsG0480018629.01.T01:intron 30.0%
TACTGATCTTAAATTCGCAA+AGG + Chr4:7764360-7764379 None:intergenic 30.0%
TAGAAAACATAGTAACCACT+AGG + Chr4:7765676-7765695 None:intergenic 30.0%
TAGCAGAATCACAAGTTTAT+AGG - Chr4:7765612-7765631 MsG0480018629.01.T01:CDS 30.0%
TCAAATGACAAACATGATTC+AGG - Chr4:7763310-7763329 MsG0480018629.01.T01:intron 30.0%
TCTAGTACAAAAAGACAAGT+AGG + Chr4:7766306-7766325 None:intergenic 30.0%
TTATAATGCACTGTTACGTA+CGG - Chr4:7765932-7765951 MsG0480018629.01.T01:intron 30.0%
TTATTAGCAGTATATGCTAG+AGG + Chr4:7765122-7765141 None:intergenic 30.0%
TTATTATATCCAGTGGCAAT+AGG + Chr4:7766367-7766386 None:intergenic 30.0%
TTATTCACAGAGTTCTTCTA+TGG - Chr4:7764019-7764038 MsG0480018629.01.T01:intron 30.0%
TTATTGACAGCAGTGAATAA+AGG - Chr4:7761660-7761679 MsG0480018629.01.T01:intron 30.0%
TTCCTCTGTTGAAGATAAAA+AGG - Chr4:7764295-7764314 MsG0480018629.01.T01:intron 30.0%
! AACCTTTTTATCTTCAACAG+AGG + Chr4:7764300-7764319 None:intergenic 30.0%
! AATCTAAACTTGTTTGCTTG+AGG - Chr4:7765871-7765890 MsG0480018629.01.T01:intron 30.0%
! AGTGGTTACTATGTTTTCTA+TGG - Chr4:7765676-7765695 MsG0480018629.01.T01:intron 30.0%
! ATATATGAGATGAGTTGGAT+TGG + Chr4:7761220-7761239 None:intergenic 30.0%
! ATCTAAACTTGTTTGCTTGA+GGG - Chr4:7765872-7765891 MsG0480018629.01.T01:intron 30.0%
! GAATGAACAAGGTAAACTTT+TGG - Chr4:7761463-7761482 MsG0480018629.01.T01:intron 30.0%
! GGTGATTGACTATATCTTTT+TGG - Chr4:7765534-7765553 MsG0480018629.01.T01:intron 30.0%
! TAAACTAGCAAGAATGGATT+TGG - Chr4:7765782-7765801 MsG0480018629.01.T01:intron 30.0%
! TACAACTCTTTTCATTTGCT+CGG + Chr4:7765203-7765222 None:intergenic 30.0%
! TACTTGTCTTTTTGTACTAG+AGG - Chr4:7766305-7766324 MsG0480018629.01.T01:intron 30.0%
! TATATGAGATGAGTTGGATT+GGG + Chr4:7761219-7761238 None:intergenic 30.0%
! TGTTGTTATTATACTCGAGT+GGG + Chr4:7761841-7761860 None:intergenic 30.0%
! TTAGTGTCATTGTCAAACAT+AGG + Chr4:7761738-7761757 None:intergenic 30.0%
! TTGTTGTTATTATACTCGAG+TGG + Chr4:7761842-7761861 None:intergenic 30.0%
!! GCATAGTTATTTCTTGAAGA+TGG - Chr4:7766642-7766661 MsG0480018629.01.T01:intron 30.0%
!! GTAAATGGTGATTTGTTTCA+GGG - Chr4:7764504-7764523 MsG0480018629.01.T01:intron 30.0%
!! GTCAACTGATCAGTTATTTT+TGG + Chr4:7764901-7764920 None:intergenic 30.0%
!! TCAGATTCAAAGCTTTGAAA+CGG - Chr4:7764121-7764140 MsG0480018629.01.T01:intron 30.0%
!! TGTAAATGGTGATTTGTTTC+AGG - Chr4:7764503-7764522 MsG0480018629.01.T01:intron 30.0%
!!! AACTAGTTTTGGACTCAATT+TGG + Chr4:7762440-7762459 None:intergenic 30.0%
!!! ATGTAACATGTTTTGACTGT+TGG - Chr4:7765563-7765582 MsG0480018629.01.T01:CDS 30.0%
!!! ATTTTGATAATGTCCTTCTC+GGG - Chr4:7764612-7764631 MsG0480018629.01.T01:intron 30.0%
!!! CTCTGCAATGTTTTAATTTG+TGG - Chr4:7763026-7763045 MsG0480018629.01.T01:intron 30.0%
!!! TGTTTTGATCTTTATTTGCC+TGG - Chr4:7765296-7765315 MsG0480018629.01.T01:intron 30.0%
AAAACATTATGCACAGAGCA+CGG - Chr4:7764568-7764587 MsG0480018629.01.T01:intron 35.0%
AAAAGATGGATGCTTGGATT+TGG - Chr4:7766033-7766052 MsG0480018629.01.T01:intron 35.0%
AAATCCCAGCAAAGAATGTT+GGG + Chr4:7766150-7766169 None:intergenic 35.0%
AACTTGAAAAGATGGATGCT+TGG - Chr4:7766027-7766046 MsG0480018629.01.T01:intron 35.0%
ACGACACAAAGCAATTATAC+TGG + Chr4:7761012-7761031 None:intergenic 35.0%
ACTAATCTCTCGAACTTTGT+GGG - Chr4:7763725-7763744 MsG0480018629.01.T01:intron 35.0%
AGGTGAGAAAAACACAAGAA+CGG + Chr4:7761171-7761190 None:intergenic 35.0%
ATCAAATCAGGTCATGATTC+TGG - Chr4:7762863-7762882 MsG0480018629.01.T01:intron 35.0%
ATCGTATCAGAACTTAGAAG+AGG - Chr4:7763938-7763957 MsG0480018629.01.T01:intron 35.0%
ATGAGACCAACATATAAGAC+TGG + Chr4:7765434-7765453 None:intergenic 35.0%
ATGCTCTCAAAATCATAGGT+TGG + Chr4:7761766-7761785 None:intergenic 35.0%
ATGTATAGAGAGTGATAGAG+AGG - Chr4:7766231-7766250 MsG0480018629.01.T01:intron 35.0%
ATTCTTCCTATGACCTATAG+TGG + Chr4:7764000-7764019 None:intergenic 35.0%
ATTTCTCAAACCCAACCTAA+GGG + Chr4:7763230-7763249 None:intergenic 35.0%
CAAATCAGATACAGACTCAA+TGG + Chr4:7760721-7760740 None:intergenic 35.0%
CATAAACACTCCACACAATA+TGG - Chr4:7761898-7761917 MsG0480018629.01.T01:intron 35.0%
CCAACTTCCAAGTTTCTATT+GGG - Chr4:7765162-7765181 MsG0480018629.01.T01:intron 35.0%
CGTCAAATACATGAATTACC+TGG + Chr4:7763405-7763424 None:intergenic 35.0%
CGTTAAAGAAAGTCATAGTG+TGG + Chr4:7766771-7766790 None:intergenic 35.0%
CTCTAACACATTAACTAACC+AGG - Chr4:7765060-7765079 MsG0480018629.01.T01:intron 35.0%
CTGATCTTAAATTCGCAAAG+GGG + Chr4:7764358-7764377 None:intergenic 35.0%
CTTAGTTGTCTATACTGACA+TGG - Chr4:7765496-7765515 MsG0480018629.01.T01:intron 35.0%
GAAATCATACTCTGTGTATG+CGG + Chr4:7761699-7761718 None:intergenic 35.0%
GACAGCATAAAGAATGAACT+AGG - Chr4:7764641-7764660 MsG0480018629.01.T01:intron 35.0%
GAGAATCCAAATACGTAACA+CGG - Chr4:7766333-7766352 MsG0480018629.01.T01:intron 35.0%
GGTAATTCATGTATTTGACG+TGG - Chr4:7763405-7763424 MsG0480018629.01.T01:CDS 35.0%
GTAAAGTATGTTTGCAGTGT+CGG - Chr4:7762792-7762811 MsG0480018629.01.T01:intron 35.0%
GTGTCTGCATATTGTAATTG+TGG - Chr4:7763096-7763115 MsG0480018629.01.T01:intron 35.0%
TAAAGTATGTTTGCAGTGTC+GGG - Chr4:7762793-7762812 MsG0480018629.01.T01:intron 35.0%
TACTCATAGTGAAATCTCCT+TGG - Chr4:7760944-7760963 MsG0480018629.01.T01:exon 35.0%
TATACTGCTAATAAAGCCAC+GGG - Chr4:7765128-7765147 MsG0480018629.01.T01:intron 35.0%
TATGAGAAAGATAGAGAGAC+TGG + Chr4:7766092-7766111 None:intergenic 35.0%
TATTTCTCAAACCCAACCTA+AGG + Chr4:7763231-7763250 None:intergenic 35.0%
TCCAAAATTATATCCTCTCC+CGG + Chr4:7764079-7764098 None:intergenic 35.0%
TCCAACTTCCAAGTTTCTAT+TGG - Chr4:7765161-7765180 MsG0480018629.01.T01:intron 35.0%
TCTAGACTCCAGTAAAATTC+AGG + Chr4:7765815-7765834 None:intergenic 35.0%
TGATCTTAAATTCGCAAAGG+GGG + Chr4:7764357-7764376 None:intergenic 35.0%
TTAAGAAGATTGGGTGTGAA+AGG - Chr4:7762057-7762076 MsG0480018629.01.T01:intron 35.0%
TTATTTGTACTCACTTCTGC+TGG + Chr4:7766706-7766725 None:intergenic 35.0%
TTCTCAGGTAATGTTTCCAA+AGG + Chr4:7766824-7766843 None:intergenic 35.0%
TTGATTGTGTTCTTGAGCAA+AGG - Chr4:7760850-7760869 MsG0480018629.01.T01:three_prime_UTR 35.0%
TTGTCTATACTGACATGGAT+CGG - Chr4:7765501-7765520 MsG0480018629.01.T01:intron 35.0%
! AAGTTTATAGGATTAGCGCA+AGG - Chr4:7765624-7765643 MsG0480018629.01.T01:CDS 35.0%
! AGTTTTCCAATTCTTCAACG+AGG + Chr4:7765722-7765741 None:intergenic 35.0%
! GAACGTTACATACTTTTGAC+TGG + Chr4:7761277-7761296 None:intergenic 35.0%
! GATCAGTGTGTTCAGTTTTT+AGG - Chr4:7761110-7761129 MsG0480018629.01.T01:intron 35.0%
! GTTTTCCAATTCTTCAACGA+GGG + Chr4:7765721-7765740 None:intergenic 35.0%
! TAATTTGTGGTCAGCAATCA+CGG - Chr4:7763039-7763058 MsG0480018629.01.T01:intron 35.0%
! TCGTTAGATTTTTGTGTGAC+AGG + Chr4:7763277-7763296 None:intergenic 35.0%
! TCTAAACTTGTTTGCTTGAG+GGG - Chr4:7765873-7765892 MsG0480018629.01.T01:intron 35.0%
! TCTAAGATCTAACGATTCTC+AGG + Chr4:7766839-7766858 None:intergenic 35.0%
! TGAATTTTACTGGAGTCTAG+AGG - Chr4:7765814-7765833 MsG0480018629.01.T01:intron 35.0%
! TTGAATTTTGTTCTGCCTAG+TGG - Chr4:7765658-7765677 MsG0480018629.01.T01:intron 35.0%
! TTGTGTGGAGTGTTTATGTT+TGG + Chr4:7761896-7761915 None:intergenic 35.0%
! TTGTGTTTTTCTCACCTTCA+AGG - Chr4:7761174-7761193 MsG0480018629.01.T01:CDS 35.0%
! TTTGTCTTATTGTGCATGAG+AGG + Chr4:7766186-7766205 None:intergenic 35.0%
! TTTTCGCGTAAGAATGAACA+AGG - Chr4:7761452-7761471 MsG0480018629.01.T01:intron 35.0%
! TTTTCTCACCTTCAAGGTAT+TGG - Chr4:7761180-7761199 MsG0480018629.01.T01:CDS 35.0%
!! GAGAGGATGTAAAGAGTATT+TGG - Chr4:7766248-7766267 MsG0480018629.01.T01:intron 35.0%
!! GGATGTAAAGAGTATTTGGA+AGG - Chr4:7766252-7766271 MsG0480018629.01.T01:intron 35.0%
!! GTTACATACTTTTGACTGGA+GGG + Chr4:7761273-7761292 None:intergenic 35.0%
!! TAAAGAGTATTTGGAAGGAG+TGG - Chr4:7766257-7766276 MsG0480018629.01.T01:intron 35.0%
!!! ACTGATCAGTTATTTTTGGG+TGG + Chr4:7764897-7764916 None:intergenic 35.0%
!!! CAGTTTTACTTTTTGAGTGG+TGG - Chr4:7762487-7762506 MsG0480018629.01.T01:intron 35.0%
!!! TGATTTTGAGAGCATTTACG+AGG - Chr4:7761771-7761790 MsG0480018629.01.T01:intron 35.0%
AAAACTCCACGGAATGTTTC+AGG + Chr4:7764185-7764204 None:intergenic 40.0%
AAACACTCCACACAATATGG+CGG - Chr4:7761901-7761920 MsG0480018629.01.T01:intron 40.0%
AAGAATGAACTAGGGATAGG+AGG - Chr4:7764650-7764669 MsG0480018629.01.T01:intron 40.0%
AAGGTACAGGATAATCAGCT+AGG + Chr4:7764253-7764272 None:intergenic 40.0%
AATGATCTCACAACTTCCTG+AGG - Chr4:7764861-7764880 MsG0480018629.01.T01:intron 40.0%
AATTCCTTAATCATCCCTGG+TGG - Chr4:7762117-7762136 MsG0480018629.01.T01:intron 40.0%
AATTGACAGCTGATACTCGA+TGG - Chr4:7766531-7766550 MsG0480018629.01.T01:intron 40.0%
ACTCGCTGAATATTTCAACC+TGG - Chr4:7762161-7762180 MsG0480018629.01.T01:intron 40.0%
ACTGTGCACAGGAATTTCTT+TGG - Chr4:7763376-7763395 MsG0480018629.01.T01:intron 40.0%
ACTTAGAAGAGGCTATGTGA+AGG - Chr4:7763949-7763968 MsG0480018629.01.T01:intron 40.0%
AGTATTTGGAAGGAGTGGAT+CGG - Chr4:7766262-7766281 MsG0480018629.01.T01:intron 40.0%
ATGCAGAACAATTTCAGCAG+AGG + Chr4:7760649-7760668 None:intergenic 40.0%
ATTCTGCTACACGTATACGA+TGG + Chr4:7765601-7765620 None:intergenic 40.0%
ATTTCCACAATAGGACATCC+AGG + Chr4:7765317-7765336 None:intergenic 40.0%
CAAATCCCAGCAAAGAATGT+TGG + Chr4:7766151-7766170 None:intergenic 40.0%
CAACATTCTTTGCTGGGATT+TGG - Chr4:7766149-7766168 MsG0480018629.01.T01:intron 40.0%
CACTTATATTAGAGCATGCC+AGG + Chr4:7762527-7762546 None:intergenic 40.0%
CATCTCATCTAAGAGGTCTT+GGG - Chr4:7763849-7763868 MsG0480018629.01.T01:intron 40.0%
CCCAATAGAAACTTGGAAGT+TGG + Chr4:7765165-7765184 None:intergenic 40.0%
CCTTCAATTCAGGGAGAAAT+GGG + Chr4:7764817-7764836 None:intergenic 40.0%
CGACCTTCCTATCTTTCAAT+AGG - Chr4:7766744-7766763 MsG0480018629.01.T01:intron 40.0%
CGTTAGTGTGATATCCACAA+GGG - Chr4:7764707-7764726 MsG0480018629.01.T01:CDS 40.0%
CTGGATTGTCCTTCAATTCA+GGG + Chr4:7764826-7764845 None:intergenic 40.0%
CTTCAATTCAGGGAGAAATG+GGG + Chr4:7764816-7764835 None:intergenic 40.0%
GAACAATTTCAGCAGAGGTT+TGG + Chr4:7760644-7760663 None:intergenic 40.0%
GACTAATCTCTCGAACTTTG+TGG - Chr4:7763724-7763743 MsG0480018629.01.T01:intron 40.0%
GCTCACTCAAGCTTAAAGTT+TGG + Chr4:7762410-7762429 None:intergenic 40.0%
GGTCAAATCCAATACCTTGA+AGG + Chr4:7761191-7761210 None:intergenic 40.0%
GGTCCTATTGAAAGATAGGA+AGG + Chr4:7766750-7766769 None:intergenic 40.0%
GGTGAGAAAAACACAAGAAC+GGG + Chr4:7761170-7761189 None:intergenic 40.0%
GTGAGAAAAACACAAGAACG+GGG + Chr4:7761169-7761188 None:intergenic 40.0%
GTGTGGTCCTATTGAAAGAT+AGG + Chr4:7766754-7766773 None:intergenic 40.0%
GTTCAATACACATTGCAGCT+TGG + Chr4:7767061-7767080 None:intergenic 40.0%
GTTGTCTGATCTCAATACGT+TGG - Chr4:7761539-7761558 MsG0480018629.01.T01:intron 40.0%
TACCCTCAATTTAGAAGACC+AGG - Chr4:7761246-7761265 MsG0480018629.01.T01:intron 40.0%
TAGTTCCCTCGTTGAAGAAT+TGG - Chr4:7765713-7765732 MsG0480018629.01.T01:intron 40.0%
TATGGTATGACAGGAGAATG+CGG - Chr4:7766442-7766461 MsG0480018629.01.T01:intron 40.0%
TCCTTCAATTCAGGGAGAAA+TGG + Chr4:7764818-7764837 None:intergenic 40.0%
TCGTTAGTGTGATATCCACA+AGG - Chr4:7764706-7764725 MsG0480018629.01.T01:CDS 40.0%
TCTAAATGAAATTCCGGGAG+AGG - Chr4:7764063-7764082 MsG0480018629.01.T01:intron 40.0%
TCTTATTGTGCATGAGAGGA+AGG + Chr4:7766182-7766201 None:intergenic 40.0%
TCTTTCAACGAACACATAGC+AGG - Chr4:7761950-7761969 MsG0480018629.01.T01:intron 40.0%
TGAGAAAAACACAAGAACGG+GGG + Chr4:7761168-7761187 None:intergenic 40.0%
TTAAGCTTGAGTGAGCTTCA+AGG - Chr4:7762414-7762433 MsG0480018629.01.T01:intron 40.0%
TTAATGGTGAGAAGCTGTTC+TGG + Chr4:7762099-7762118 None:intergenic 40.0%
TTATAGTTGCTGTGCGACAA+GGG - Chr4:7766480-7766499 MsG0480018629.01.T01:intron 40.0%
TTGCGAGAGTTTGTGCAAAT+GGG - Chr4:7762936-7762955 MsG0480018629.01.T01:intron 40.0%
! AAATCTCCTTGGAAGTGCAA+GGG - Chr4:7760955-7760974 MsG0480018629.01.T01:CDS 40.0%
! ATTTGACGTGGCTTCTTTTG+TGG - Chr4:7763417-7763436 MsG0480018629.01.T01:CDS 40.0%
! CGTAATTTCAAGTGTGACTG+CGG - Chr4:7763166-7763185 MsG0480018629.01.T01:intron 40.0%
! GACCTGGTCTTCTAAATTGA+GGG + Chr4:7761251-7761270 None:intergenic 40.0%
! GACGTACACCTGAATTTTAC+TGG - Chr4:7765804-7765823 MsG0480018629.01.T01:intron 40.0%
! GGGCTGCTTTCTCAAAAATA+AGG + Chr4:7765380-7765399 None:intergenic 40.0%
! TATGTTTGGTCCTCTCGTTT+TGG + Chr4:7761882-7761901 None:intergenic 40.0%
! TCCGGGAGAGGATATAATTT+TGG - Chr4:7764075-7764094 MsG0480018629.01.T01:intron 40.0%
! TTTGACGTGGCTTCTTTTGT+GGG - Chr4:7763418-7763437 MsG0480018629.01.T01:CDS 40.0%
!! CGTTACATACTTTTGACTGG+AGG + Chr4:7761274-7761293 None:intergenic 40.0%
!! GATGAGTTGGATTGGGATTT+TGG + Chr4:7761212-7761231 None:intergenic 40.0%
ACCCAAAATCCACGATGTTG+TGG + Chr4:7763071-7763090 None:intergenic 45.0%
ACCTCTTAGATGAGATGCAC+GGG + Chr4:7763846-7763865 None:intergenic 45.0%
ACTGACATGGATCGGAACAT+GGG - Chr4:7765509-7765528 MsG0480018629.01.T01:intron 45.0%
AGAAGAGGCTATGTGAAGGA+TGG - Chr4:7763953-7763972 MsG0480018629.01.T01:intron 45.0%
AGAATAATCCCCTCCTACCA+GGG + Chr4:7764744-7764763 None:intergenic 45.0%
AGCAAAGAATGTTGGGAAGG+AGG + Chr4:7766143-7766162 None:intergenic 45.0%
ATATTAAGCCCTGGTAGGAG+GGG - Chr4:7764733-7764752 MsG0480018629.01.T01:CDS 45.0%
CAAATGGGAAAGCCAGTTTG+GGG - Chr4:7762951-7762970 MsG0480018629.01.T01:intron 45.0%
CAAGTAGGAGAGCAGACATA+TGG + Chr4:7766291-7766310 None:intergenic 45.0%
CAGGAAAATTAGTCCTGCAC+AGG + Chr4:7762979-7762998 None:intergenic 45.0%
CATGATTCAGGACAGAAGAC+TGG - Chr4:7763322-7763341 MsG0480018629.01.T01:intron 45.0%
CATGCTGAAACCAAAACGAG+AGG - Chr4:7761869-7761888 MsG0480018629.01.T01:intron 45.0%
CATTTGCACAAACTCTCGCA+AGG + Chr4:7762937-7762956 None:intergenic 45.0%
CCCATTTCTCCCTGAATTGA+AGG - Chr4:7764814-7764833 MsG0480018629.01.T01:CDS 45.0%
CCCCAGCAATTATTGACGTA+GGG - Chr4:7764213-7764232 MsG0480018629.01.T01:intron 45.0%
CCCTACGTCAATAATTGCTG+GGG + Chr4:7764216-7764235 None:intergenic 45.0%
CCTGAATTGAAGGACAATCC+AGG - Chr4:7764824-7764843 MsG0480018629.01.T01:CDS 45.0%
CCTGGATTGTCCTTCAATTC+AGG + Chr4:7764827-7764846 None:intergenic 45.0%
CCTTCCCAACATTCTTTGCT+GGG - Chr4:7766143-7766162 MsG0480018629.01.T01:intron 45.0%
CGAGTATCAGCTGTCAATTC+AGG + Chr4:7766530-7766549 None:intergenic 45.0%
CGCAGTTGTATGCACAAGTT+CGG - Chr4:7763785-7763804 MsG0480018629.01.T01:intron 45.0%
CGGAGCCGTTCAATTAAGAT+CGG + Chr4:7761629-7761648 None:intergenic 45.0%
CTAACTGCAATAGCAGAGGT+AGG + Chr4:7765013-7765032 None:intergenic 45.0%
CTCACTAACTGCAATAGCAG+AGG + Chr4:7765017-7765036 None:intergenic 45.0%
CTGTACATCCAGTCCACTAT+AGG - Chr4:7763984-7764003 MsG0480018629.01.T01:intron 45.0%
CTTGCGAGAGTTTGTGCAAA+TGG - Chr4:7762935-7762954 MsG0480018629.01.T01:intron 45.0%
GAACACACTGATCAGAAGCT+AGG + Chr4:7761103-7761122 None:intergenic 45.0%
GAACTTTGTGGGACCTAAGT+GGG - Chr4:7763736-7763755 MsG0480018629.01.T01:intron 45.0%
GAAGAGGCTATGTGAAGGAT+GGG - Chr4:7763954-7763973 MsG0480018629.01.T01:intron 45.0%
GACCTCTTAGATGAGATGCA+CGG + Chr4:7763847-7763866 None:intergenic 45.0%
GATATTAAGCCCTGGTAGGA+GGG - Chr4:7764732-7764751 MsG0480018629.01.T01:CDS 45.0%
GCAAAGAATGTTGGGAAGGA+GGG + Chr4:7766142-7766161 None:intergenic 45.0%
GCAAATGGGAAAGCCAGTTT+GGG - Chr4:7762950-7762969 MsG0480018629.01.T01:intron 45.0%
GCAGTTGTATGCACAAGTTC+GGG - Chr4:7763786-7763805 MsG0480018629.01.T01:intron 45.0%
GCATCTCATCTAAGAGGTCT+TGG - Chr4:7763848-7763867 MsG0480018629.01.T01:intron 45.0%
GCATGAACTGCATGTGTGTT+TGG - Chr4:7762374-7762393 MsG0480018629.01.T01:intron 45.0%
GCCCTACGTCAATAATTGCT+GGG + Chr4:7764217-7764236 None:intergenic 45.0%
GGGCACGAATAAAAACTCCA+CGG + Chr4:7764196-7764215 None:intergenic 45.0%
GGGCTTAATATCAACCCTTG+TGG + Chr4:7764724-7764743 None:intergenic 45.0%
GTCAGTCCGTGTTACGTATT+TGG + Chr4:7766342-7766361 None:intergenic 45.0%
GTGGCTCTCAATTGAAAACC+TGG - Chr4:7762506-7762525 MsG0480018629.01.T01:intron 45.0%
GTTATAGTTGCTGTGCGACA+AGG - Chr4:7766479-7766498 MsG0480018629.01.T01:intron 45.0%
TACTGACATGGATCGGAACA+TGG - Chr4:7765508-7765527 MsG0480018629.01.T01:intron 45.0%
TAGAATAATCCCCTCCTACC+AGG + Chr4:7764745-7764764 None:intergenic 45.0%
TCAGCTAGGACTTGAACTTC+TGG + Chr4:7764239-7764258 None:intergenic 45.0%
TCCAGTCCACTATAGGTCAT+AGG - Chr4:7763991-7764010 MsG0480018629.01.T01:intron 45.0%
TCCTTCCCAACATTCTTTGC+TGG - Chr4:7766142-7766161 MsG0480018629.01.T01:intron 45.0%
TCTAACTTAAACAAGGCCCC+AGG + Chr4:7763818-7763837 None:intergenic 45.0%
TGATATTAAGCCCTGGTAGG+AGG - Chr4:7764731-7764750 MsG0480018629.01.T01:CDS 45.0%
TGCAAATGGGAAAGCCAGTT+TGG - Chr4:7762949-7762968 MsG0480018629.01.T01:intron 45.0%
TTCACCACCAGGGATGATTA+AGG + Chr4:7762124-7762143 None:intergenic 45.0%
TTCAGCGAGTTTAGCCATAG+TGG + Chr4:7762151-7762170 None:intergenic 45.0%
TTGCTTGTGTGCTTGAGCAT+TGG - Chr4:7760880-7760899 MsG0480018629.01.T01:three_prime_UTR 45.0%
TTTGCCTGGATGTCCTATTG+TGG - Chr4:7765310-7765329 MsG0480018629.01.T01:intron 45.0%
! AATCTCCTTGGAAGTGCAAG+GGG - Chr4:7760956-7760975 MsG0480018629.01.T01:CDS 45.0%
! ACTGGTGGACAAGAACTTGT+TGG - Chr4:7763340-7763359 MsG0480018629.01.T01:intron 45.0%
! AGCCACAACATCGTGGATTT+TGG - Chr4:7763066-7763085 MsG0480018629.01.T01:intron 45.0%
! CTCTTCTCTTTTCCACCCTT+AGG - Chr4:7763212-7763231 MsG0480018629.01.T01:intron 45.0%
! CTCTTTTCCACCCTTAGGTT+GGG - Chr4:7763217-7763236 MsG0480018629.01.T01:intron 45.0%
! CTGTGCAGGACTAATTTTCC+TGG - Chr4:7762977-7762996 MsG0480018629.01.T01:intron 45.0%
! GAAATCTCCTTGGAAGTGCA+AGG - Chr4:7760954-7760973 MsG0480018629.01.T01:CDS 45.0%
! GCCACAACATCGTGGATTTT+GGG - Chr4:7763067-7763086 MsG0480018629.01.T01:intron 45.0%
! GGACCTGGTCTTCTAAATTG+AGG + Chr4:7761252-7761271 None:intergenic 45.0%
! GGTTGATATTAAGCCCTGGT+AGG - Chr4:7764728-7764747 MsG0480018629.01.T01:CDS 45.0%
! GTTGGTGTTCTCGCTTTACA+AGG - Chr4:7761926-7761945 MsG0480018629.01.T01:intron 45.0%
! TCTCTTTTCCACCCTTAGGT+TGG - Chr4:7763216-7763235 MsG0480018629.01.T01:intron 45.0%
! TTGACGTGGCTTCTTTTGTG+GGG - Chr4:7763419-7763438 MsG0480018629.01.T01:CDS 45.0%
!! CAACCCACCTGTAGCTTTAT+CGG + Chr4:7763003-7763022 None:intergenic 45.0%
!! CAAGGGTTGATATTAAGCCC+TGG - Chr4:7764724-7764743 MsG0480018629.01.T01:CDS 45.0%
!! CTTGAGGGGCATCTATGTTT+GGG - Chr4:7765887-7765906 MsG0480018629.01.T01:intron 45.0%
!! TACTGGTTCCTTCCACAATC+CGG + Chr4:7760995-7761014 None:intergenic 45.0%
!! TCCTATGACCTATAGTGGAC+TGG + Chr4:7763995-7764014 None:intergenic 45.0%
AAAAACCAACTCGGCAAGCC+TGG + Chr4:7765081-7765100 None:intergenic 50.0%
ACCCGTGCATCTCATCTAAG+AGG - Chr4:7763842-7763861 MsG0480018629.01.T01:intron 50.0%
ACTGGACTACTTCCGGATTG+TGG - Chr4:7760980-7760999 MsG0480018629.01.T01:CDS 50.0%
ATAGTGGTGCTTTCACCACC+AGG + Chr4:7762135-7762154 None:intergenic 50.0%
ATGGTACATGTGGCTGCTAC+TGG + Chr4:7765849-7765868 None:intergenic 50.0%
CAGGAATTTCTTTGGCAGCC+AGG - Chr4:7763384-7763403 MsG0480018629.01.T01:intron 50.0%
CCCAGCAAAGAATGTTGGGA+AGG + Chr4:7766146-7766165 None:intergenic 50.0%
CGAACTTTGTGGGACCTAAG+TGG - Chr4:7763735-7763754 MsG0480018629.01.T01:intron 50.0%
GAACTCACCACTCTGACAGA+AGG + Chr4:7764272-7764291 None:intergenic 50.0%
GACTACTTCCGGATTGTGGA+AGG - Chr4:7760984-7761003 MsG0480018629.01.T01:CDS 50.0%
GACTTGATTGCACTGTGCAC+AGG - Chr4:7763365-7763384 MsG0480018629.01.T01:intron 50.0%
GAGCACGGTTGAATACATGC+TGG - Chr4:7764583-7764602 MsG0480018629.01.T01:intron 50.0%
GATTCAGGACAGAAGACTGG+TGG - Chr4:7763325-7763344 MsG0480018629.01.T01:intron 50.0%
GCCCCAGCAATTATTGACGT+AGG - Chr4:7764212-7764231 MsG0480018629.01.T01:intron 50.0%
GGCCCTACGTCAATAATTGC+TGG + Chr4:7764218-7764237 None:intergenic 50.0%
TAGTGGTGCTTTCACCACCA+GGG + Chr4:7762134-7762153 None:intergenic 50.0%
TCCTGTACCTTCTGTCAGAG+TGG - Chr4:7764262-7764281 MsG0480018629.01.T01:intron 50.0%
TCTCAAACCCAACCTAAGGG+TGG + Chr4:7763227-7763246 None:intergenic 50.0%
TCTTGCAGTTGTGCTTGAGC+AGG - Chr4:7760820-7760839 MsG0480018629.01.T01:three_prime_UTR 50.0%
TGGCCGATAAAGCTACAGGT+GGG - Chr4:7762997-7763016 MsG0480018629.01.T01:intron 50.0%
TGGTACATGTGGCTGCTACT+GGG + Chr4:7765848-7765867 None:intergenic 50.0%
TGTGCGACAAGGGAACATAC+TGG - Chr4:7766490-7766509 MsG0480018629.01.T01:intron 50.0%
TGTTTCAGGACCACCTTCCT+TGG + Chr4:7764171-7764190 None:intergenic 50.0%
TTCCTGGCCGATAAAGCTAC+AGG - Chr4:7762993-7763012 MsG0480018629.01.T01:intron 50.0%
TTGTGCATGAGAGGAAGGAG+AGG + Chr4:7766177-7766196 None:intergenic 50.0%
! ACAAGTTCGGGTTCGAACCT+GGG - Chr4:7763798-7763817 MsG0480018629.01.T01:intron 50.0%
! ACCACTCTGACAGAAGGTAC+AGG + Chr4:7764266-7764285 None:intergenic 50.0%
! ATCTCCTTGGAAGTGCAAGG+GGG - Chr4:7760957-7760976 MsG0480018629.01.T01:CDS 50.0%
! GACTGACTTCCTATTGCCAC+TGG - Chr4:7766355-7766374 MsG0480018629.01.T01:intron 50.0%
! TGAGTGTTTTCCGCCCACTT+AGG + Chr4:7763752-7763771 None:intergenic 50.0%
!! GCTTGAGGGGCATCTATGTT+TGG - Chr4:7765886-7765905 MsG0480018629.01.T01:intron 50.0%
!! GGTGGACAAGAACTTGTTGG+TGG - Chr4:7763343-7763362 MsG0480018629.01.T01:intron 50.0%
!! TACTTTTGACTGGAGGGACC+TGG + Chr4:7761267-7761286 None:intergenic 50.0%
!! TGGTGGTGAAAGCACCACTA+TGG - Chr4:7762134-7762153 MsG0480018629.01.T01:intron 50.0%
!!! CGTTTTGGTTTCAGCATGCG+TGG + Chr4:7761867-7761886 None:intergenic 50.0%
AAGGGGGACTGGACTACTTC+CGG - Chr4:7760973-7760992 MsG0480018629.01.T01:CDS 55.0%
ACATGGATCGGAACATGGGC+AGG - Chr4:7765513-7765532 MsG0480018629.01.T01:intron 55.0%
ACTAACCAGGCTTGCCGAGT+TGG - Chr4:7765073-7765092 MsG0480018629.01.T01:intron 55.0%
AGTACCTGAGCTCGTCTCCA+AGG - Chr4:7764151-7764170 MsG0480018629.01.T01:intron 55.0%
CACTCCACACAATATGGCGG+TGG - Chr4:7761904-7761923 MsG0480018629.01.T01:intron 55.0%
CCAACCACCGCCATATTGTG+TGG + Chr4:7761911-7761930 None:intergenic 55.0%
CCACACAATATGGCGGTGGT+TGG - Chr4:7761908-7761927 MsG0480018629.01.T01:intron 55.0%
CGGTTACAGCCACAACATCG+TGG - Chr4:7763059-7763078 MsG0480018629.01.T01:intron 55.0%
CTGGCCGATAAAGCTACAGG+TGG - Chr4:7762996-7763015 MsG0480018629.01.T01:intron 55.0%
CTTTGTGGGACCTAAGTGGG+CGG - Chr4:7763739-7763758 MsG0480018629.01.T01:intron 55.0%
GGGAAATGTGACCCGAGAAG+AGG - Chr4:7766663-7766682 MsG0480018629.01.T01:intron 55.0%
GGGTGGAATAGATCAGCCTC+AGG + Chr4:7764880-7764899 None:intergenic 55.0%
GGTGGTCCTGAAACATTCCG+TGG - Chr4:7764176-7764195 MsG0480018629.01.T01:intron 55.0%
GTTGGAAGCAATACAGCCCG+TGG + Chr4:7765147-7765166 None:intergenic 55.0%
TGCACAAACTCTCGCAAGGC+CGG + Chr4:7762933-7762952 None:intergenic 55.0%
TGCTGCGTGCGGAGGATATT+CGG + Chr4:7763699-7763718 None:intergenic 55.0%
TGCTGGAACAACGCTACTCG+AGG + Chr4:7766689-7766708 None:intergenic 55.0%
TGCTGTCAACAAGCCCGAGA+AGG + Chr4:7764628-7764647 None:intergenic 55.0%
! CAAGTTCGGGTTCGAACCTG+GGG - Chr4:7763799-7763818 MsG0480018629.01.T01:intron 55.0%
! CACAAGTTCGGGTTCGAACC+TGG - Chr4:7763797-7763816 MsG0480018629.01.T01:intron 55.0%
! GGGGCATCTATGTTTGGGTC+AGG - Chr4:7765892-7765911 MsG0480018629.01.T01:intron 55.0%
!! CACCTGTAGCTTTATCGGCC+AGG + Chr4:7762998-7763017 None:intergenic 55.0%
ATATCCTCCGCACGCAGCAG+CGG - Chr4:7763700-7763719 MsG0480018629.01.T01:intron 60.0%
CAGTCCCCCTTGCACTTCCA+AGG + Chr4:7760964-7760983 None:intergenic 60.0%
CCAGTTTGGGGAACCTGTGC+AGG - Chr4:7762963-7762982 MsG0480018629.01.T01:intron 60.0%
CCTGAGCTCGTCTCCAAGGA+AGG - Chr4:7764155-7764174 MsG0480018629.01.T01:intron 60.0%
CCTGCACAGGTTCCCCAAAC+TGG + Chr4:7762966-7762985 None:intergenic 60.0%
CCTTCCTTGGAGACGAGCTC+AGG + Chr4:7764158-7764177 None:intergenic 60.0%
CGCTACTCGAGGCCTCTTCT+CGG + Chr4:7766678-7766697 None:intergenic 60.0%
GAGCTCGTCTCCAAGGAAGG+TGG - Chr4:7764158-7764177 MsG0480018629.01.T01:intron 60.0%
GCTACTCGAGGCCTCTTCTC+GGG + Chr4:7766677-7766696 None:intergenic 60.0%
TTAGTCTCCGCTGCTGCGTG+CGG + Chr4:7763710-7763729 None:intergenic 60.0%
! CTTGGAAGTGCAAGGGGGAC+TGG - Chr4:7760962-7760981 MsG0480018629.01.T01:CDS 60.0%
GTCTCCGCTGCTGCGTGCGG+AGG + Chr4:7763707-7763726 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr4 gene 7760612 7767107 7760612 ID=MsG0480018629.01;Name=MsG0480018629.01
Chr4 mRNA 7760612 7767107 7760612 ID=MsG0480018629.01.T01;Parent=MsG0480018629.01;Name=MsG0480018629.01.T01;_AED=0.46;_eAED=0.52;_QI=0|0.66|0.71|1|1|1|7|342|296
Chr4 exon 7760612 7761077 7760612 ID=MsG0480018629.01.T01:exon:2504;Parent=MsG0480018629.01.T01
Chr4 exon 7761167 7761264 7761167 ID=MsG0480018629.01.T01:exon:2503;Parent=MsG0480018629.01.T01
Chr4 exon 7763403 7763594 7763403 ID=MsG0480018629.01.T01:exon:2502;Parent=MsG0480018629.01.T01
Chr4 exon 7764314 7764387 7764314 ID=MsG0480018629.01.T01:exon:2501;Parent=MsG0480018629.01.T01
Chr4 exon 7764705 7764846 7764705 ID=MsG0480018629.01.T01:exon:2500;Parent=MsG0480018629.01.T01
Chr4 exon 7765537 7765664 7765537 ID=MsG0480018629.01.T01:exon:2499;Parent=MsG0480018629.01.T01
Chr4 exon 7766975 7767107 7766975 ID=MsG0480018629.01.T01:exon:2498;Parent=MsG0480018629.01.T01
Chr4 CDS 7766975 7767107 7766975 ID=MsG0480018629.01.T01:cds;Parent=MsG0480018629.01.T01
Chr4 CDS 7765537 7765664 7765537 ID=MsG0480018629.01.T01:cds;Parent=MsG0480018629.01.T01
Chr4 CDS 7764705 7764846 7764705 ID=MsG0480018629.01.T01:cds;Parent=MsG0480018629.01.T01
Chr4 CDS 7764314 7764387 7764314 ID=MsG0480018629.01.T01:cds;Parent=MsG0480018629.01.T01
Chr4 CDS 7763403 7763594 7763403 ID=MsG0480018629.01.T01:cds;Parent=MsG0480018629.01.T01
Chr4 CDS 7761167 7761264 7761167 ID=MsG0480018629.01.T01:cds;Parent=MsG0480018629.01.T01
Chr4 CDS 7760954 7761077 7760954 ID=MsG0480018629.01.T01:cds;Parent=MsG0480018629.01.T01
Chr4 three_prime_UTR 7760612 7760953 7760612 ID=MsG0480018629.01.T01:three_prime_utr;Parent=MsG0480018629.01.T01
Gene Sequence

>MsG0480018629.01.T01

ATGAAAGACTCACAAGATTTTCACAAGTACCAAACCTCTGCTGAAATTGTTCTGCATTCACTTAGAATTTCTGTGTCTCAAAGTCATATCTTAGAAATTCTTAAGTCCATTGAGTCTGTATCTGATTTGTATTTTTTAAGAAGATTGGGTGTGAAAGGTGTTGAGATTCGAAAACCAGAACAGCTTCTCACCATTAATTCCTTAATCATCCCTGGTGGTGAAAGCACCACTATGGCTAAACTCGCTGAATATTTCAACCTGGTCATGATTCTGGCATATGATCATAATCTAATGCTGAATGTTTCAATTTATCAGTTTCCGGCCTTGCGAGAGTTTGTGCAAATGGGAAAGCCAGTTTGGGGAACCTGTGCAGGACTAATTTTCCTGGCCGATAAAGCTACAGGACAGAAGACTGGTGGACAAGAACTTGTTGGTGGACTTGATTGCACTGTGCACAGGAATTTCTTTGGCAGCCAGATTCAAAGCTTTGAAACGGAGCTTGCAGTACCTGAGCTCGTCTCCAAGGAAGGTGGTCCTGAAACATTCCGTGGAGTTTTTATTCGTGCCCCAGCAATTATTGACGTAGGGCCAGAAGTTCAAGTCCTAGCTGATTATCCTGTACCTTCTGTCAGAGTGGTGAGTTCTGATTCCTCTGTTGAAGATAAAAAGGAGAATGCGGATGAAAAAAGCAAAGTTATAGTTGCTGTGCGACAAGGGAACATACTGGCGACTGCTTTTCATCCTGAATTGACAGCTGATACTCGATGGCATAGTTATTTCTTGAAGATGGGAAATGTGACCCGAGAAGAGGCCTCGAGTAGCGTTGTTCCAGCAGAAGTGAGTACAAATAATAAGCTACAATCACAGAACGACCTTCCTATCTTTCAATAG

Protein sequence

>MsG0480018629.01.T01

MKDSQDFHKYQTSAEIVLHSLRISVSQSHILEILKSIESVSDLYFLRRLGVKGVEIRKPEQLLTINSLIIPGGESTTMAKLAEYFNLVMILAYDHNLMLNVSIYQFPALREFVQMGKPVWGTCAGLIFLADKATGQKTGGQELVGGLDCTVHRNFFGSQIQSFETELAVPELVSKEGGPETFRGVFIRAPAIIDVGPEVQVLADYPVPSVRVVSSDSSVEDKKENADEKSKVIVAVRQGNILATAFHPELTADTRWHSYFLKMGNVTREEASSSVVPAEVSTNNKLQSQNDLPIFQ*