Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680034725.01.T01 | XP_039682653.1 | 98.425 | 127 | 2 | 0 | 39 | 165 | 196 | 322 | 2.94E-84 | 261 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680034725.01.T01 | A0A2P1GIY9 | 55.906 | 127 | 56 | 0 | 39 | 165 | 197 | 323 | 1.71E-46 | 157 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680034725.01.T01 | A0A396HGB9 | 98.425 | 127 | 2 | 0 | 39 | 165 | 196 | 322 | 1.41e-84 | 261 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048773.01 | MsG0680034725.01 | 0.812859 | 3.429188e-51 | 2.204527e-48 |
| MsG0080048938.01 | MsG0680034725.01 | 0.824516 | 7.739339e-54 | 6.870582e-51 |
| MsG0180000272.01 | MsG0680034725.01 | 0.815509 | 8.913637e-52 | 6.157768e-49 |
| MsG0180000489.01 | MsG0680034725.01 | 0.813492 | 2.489969e-51 | 1.628560e-48 |
| MsG0180000784.01 | MsG0680034725.01 | 0.823610 | 1.262306e-53 | 1.092206e-50 |
| MsG0180000843.01 | MsG0680034725.01 | 0.809159 | 2.171637e-50 | 1.265605e-47 |
| MsG0180002523.01 | MsG0680034725.01 | 0.810751 | 9.862649e-51 | 5.995141e-48 |
| MsG0180002700.01 | MsG0680034725.01 | 0.805618 | 1.223882e-49 | 6.504840e-47 |
| MsG0180004025.01 | MsG0680034725.01 | 0.802250 | 6.132785e-49 | 2.989838e-46 |
| MsG0180004246.01 | MsG0680034725.01 | 0.804997 | 1.651471e-49 | 8.638613e-47 |
| MsG0180005005.01 | MsG0680034725.01 | 0.810909 | 9.116613e-51 | 5.565220e-48 |
| MsG0180005339.01 | MsG0680034725.01 | 0.811885 | 5.597222e-51 | 3.505764e-48 |
| MsG0180005391.01 | MsG0680034725.01 | 0.846254 | 2.437383e-59 | 4.170127e-56 |
| MsG0180005803.01 | MsG0680034725.01 | 0.811793 | 5.859826e-51 | 3.661456e-48 |
| MsG0180005829.01 | MsG0680034725.01 | 0.807649 | 4.559024e-50 | 2.553179e-47 |
| MsG0280010564.01 | MsG0680034725.01 | 0.827967 | 1.167624e-54 | 1.144781e-51 |
| MsG0280011110.01 | MsG0680034725.01 | -0.807341 | 5.298688e-50 | 2.943904e-47 |
| MsG0280011180.01 | MsG0680034725.01 | 0.800783 | 1.225795e-48 | 5.757540e-46 |
| MsG0380013177.01 | MsG0680034725.01 | 0.827878 | 1.226675e-54 | 1.199502e-51 |
| MsG0680030907.01 | MsG0680034725.01 | 0.811323 | 7.416363e-51 | 4.576587e-48 |
| MsG0680034725.01 | MsG0680034730.01 | 0.896446 | 3.660675e-76 | 3.961332e-72 |
| MsG0680034725.01 | MsG0680034767.01 | 0.805948 | 1.043129e-49 | 5.591602e-47 |
| MsG0680034725.01 | MsG0680035075.01 | 0.831017 | 2.118559e-55 | 2.270474e-52 |
| MsG0680034725.01 | MsG0680035269.01 | 0.828401 | 9.176278e-55 | 9.111324e-52 |
| MsG0680034725.01 | MsG0680035664.01 | 0.813012 | 3.175025e-51 | 2.049548e-48 |
| MsG0680034725.01 | MsG0680035665.01 | 0.808179 | 3.517570e-50 | 1.997690e-47 |
| MsG0680034725.01 | MsG0780035960.01 | 0.800425 | 1.449810e-48 | 6.748826e-46 |
| MsG0680034725.01 | MsG0780036803.01 | 0.821681 | 3.547435e-53 | 2.905875e-50 |
| MsG0680034725.01 | MsG0780037363.01 | 0.805206 | 1.492838e-49 | 7.851022e-47 |
| MsG0680034725.01 | MsG0780039805.01 | 0.800365 | 1.491094e-48 | 6.930324e-46 |
| MsG0680034725.01 | MsG0780040278.01 | 0.801193 | 1.010523e-48 | 4.796223e-46 |
| MsG0680034725.01 | MsG0780040700.01 | 0.815998 | 6.934385e-52 | 4.854890e-49 |
| MsG0680034725.01 | MsG0780041091.01 | 0.825956 | 3.533389e-54 | 3.268539e-51 |
| MsG0680034725.01 | MsG0880042086.01 | 0.813482 | 2.502767e-51 | 1.636466e-48 |
| MsG0680034725.01 | MsG0880042695.01 | 0.822004 | 2.987049e-53 | 2.469321e-50 |
| MsG0680034725.01 | MsG0880043107.01 | 0.800681 | 1.285845e-48 | 6.024173e-46 |
| MsG0680034725.01 | MsG0880043829.01 | 0.815756 | 7.852195e-52 | 5.461497e-49 |
| MsG0680034725.01 | MsG0880043965.01 | 0.805251 | 1.460600e-49 | 7.690090e-47 |
| MsG0680034725.01 | MsG0880044410.01 | 0.825432 | 4.701787e-54 | 4.284655e-51 |
| MsG0680034725.01 | MsG0880044435.01 | 0.805843 | 1.097318e-49 | 5.866363e-47 |
| MsG0680034725.01 | MsG0880047322.01 | 0.809820 | 1.566528e-50 | 9.291220e-48 |
| MsG0680034725.01 | MsG0880047614.01 | 0.823913 | 1.072233e-53 | 9.357442e-51 |
| MsG0480019384.01 | MsG0680034725.01 | 0.801614 | 8.286012e-49 | 3.974564e-46 |
| MsG0480020473.01 | MsG0680034725.01 | 0.803236 | 3.838704e-49 | 1.918996e-46 |
| MsG0480021406.01 | MsG0680034725.01 | 0.817335 | 3.478300e-52 | 2.525946e-49 |
| MsG0480021999.01 | MsG0680034725.01 | 0.807227 | 5.602104e-50 | 3.103250e-47 |
| MsG0480022162.01 | MsG0680034725.01 | 0.816391 | 5.664637e-52 | 4.008740e-49 |
| MsG0480022240.01 | MsG0680034725.01 | 0.805441 | 1.333067e-49 | 7.053111e-47 |
| MsG0580024404.01 | MsG0680034725.01 | 0.810261 | 1.258584e-50 | 7.551243e-48 |
| MsG0580025558.01 | MsG0680034725.01 | -0.842954 | 1.885386e-58 | 2.904918e-55 |
| MsG0580026050.01 | MsG0680034725.01 | 0.813791 | 2.140153e-51 | 1.411054e-48 |
| MsG0380015438.01 | MsG0680034725.01 | 0.805070 | 1.594096e-49 | 8.354435e-47 |
| MsG0380015847.01 | MsG0680034725.01 | -0.822719 | 2.038128e-53 | 1.719652e-50 |
| MsG0380017293.01 | MsG0680034725.01 | 0.821836 | 3.267544e-53 | 2.688423e-50 |
| MsG0580026159.01 | MsG0680034725.01 | -0.805562 | 1.257126e-49 | 6.671910e-47 |
| MsG0580026498.01 | MsG0680034725.01 | 0.824548 | 7.605396e-54 | 6.758239e-51 |
| MsG0580029237.01 | MsG0680034725.01 | 0.837289 | 5.676449e-57 | 7.339388e-54 |
| MsG0580029700.01 | MsG0680034725.01 | 0.811257 | 7.665324e-51 | 4.722268e-48 |
| MsG0580030063.01 | MsG0680034725.01 | 0.830611 | 2.663274e-55 | 2.820286e-52 |
| MsG0680030599.01 | MsG0680034725.01 | 0.808299 | 3.315665e-50 | 1.888929e-47 |
| MsG0280008098.01 | MsG0680034725.01 | 0.815728 | 7.968703e-52 | 5.538249e-49 |
| MsG0280008928.01 | MsG0680034725.01 | 0.801870 | 7.340895e-49 | 3.544480e-46 |
| MsG0280009699.01 | MsG0680034725.01 | 0.800239 | 1.582048e-48 | 7.329300e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680034725.01.T01 | MTR_6g072710 | 94.444 | 108 | 6 | 0 | 39 | 146 | 6 | 113 | 5.76e-71 | 209 |
| MsG0680034725.01.T01 | MTR_4g072350 | 62.698 | 126 | 47 | 0 | 39 | 164 | 195 | 320 | 1.27e-53 | 172 |
| MsG0680034725.01.T01 | MTR_4g072320 | 62.205 | 127 | 48 | 0 | 39 | 165 | 189 | 315 | 1.53e-53 | 172 |
| MsG0680034725.01.T01 | MTR_4g072360 | 60.317 | 126 | 50 | 0 | 39 | 164 | 195 | 320 | 1.61e-50 | 164 |
| MsG0680034725.01.T01 | MTR_6g073110 | 58.065 | 124 | 52 | 0 | 39 | 162 | 195 | 318 | 2.13e-45 | 151 |
| MsG0680034725.01.T01 | MTR_6g072650 | 52.381 | 126 | 38 | 1 | 39 | 164 | 33 | 136 | 1.96e-40 | 133 |
| MsG0680034725.01.T01 | MTR_0374s0050 | 46.825 | 126 | 59 | 1 | 39 | 164 | 198 | 315 | 1.34e-32 | 118 |
| MsG0680034725.01.T01 | MTR_8g070115 | 42.188 | 128 | 73 | 1 | 39 | 165 | 188 | 315 | 2.48e-30 | 112 |
| MsG0680034725.01.T01 | MTR_8g070095 | 42.969 | 128 | 70 | 2 | 39 | 165 | 194 | 319 | 4.19e-30 | 112 |
| MsG0680034725.01.T01 | MTR_3g083130 | 47.619 | 126 | 54 | 3 | 39 | 162 | 198 | 313 | 3.53e-29 | 109 |
| MsG0680034725.01.T01 | MTR_4g021350 | 42.188 | 128 | 71 | 2 | 39 | 165 | 188 | 313 | 3.78e-28 | 106 |
| MsG0680034725.01.T01 | MTR_4g036845 | 42.969 | 128 | 72 | 1 | 39 | 165 | 188 | 315 | 4.39e-28 | 106 |
| MsG0680034725.01.T01 | MTR_4g021450 | 41.732 | 127 | 69 | 2 | 39 | 164 | 63 | 185 | 2.58e-27 | 101 |
| MsG0680034725.01.T01 | MTR_4g021450 | 41.732 | 127 | 69 | 2 | 39 | 164 | 106 | 228 | 8.89e-27 | 101 |
| MsG0680034725.01.T01 | MTR_4g021450 | 41.732 | 127 | 69 | 2 | 39 | 164 | 182 | 304 | 5.44e-26 | 100 |
| MsG0680034725.01.T01 | MTR_5g097910 | 49.074 | 108 | 50 | 2 | 39 | 144 | 196 | 300 | 7.70e-26 | 100 |
| MsG0680034725.01.T01 | MTR_5g097940 | 49.074 | 108 | 50 | 2 | 39 | 144 | 196 | 300 | 7.70e-26 | 100 |
| MsG0680034725.01.T01 | MTR_5g097900 | 49.074 | 108 | 50 | 2 | 39 | 144 | 196 | 300 | 8.20e-26 | 100 |
| MsG0680034725.01.T01 | MTR_4g021410 | 40.800 | 125 | 69 | 2 | 39 | 162 | 106 | 226 | 2.39e-25 | 97.4 |
| MsG0680034725.01.T01 | MTR_4g021410 | 40.800 | 125 | 69 | 2 | 39 | 162 | 145 | 265 | 7.84e-25 | 97.1 |
| MsG0680034725.01.T01 | MTR_4g021410 | 40.800 | 125 | 69 | 2 | 39 | 162 | 182 | 302 | 1.15e-24 | 97.1 |
| MsG0680034725.01.T01 | MTR_7g063580 | 39.844 | 128 | 75 | 2 | 39 | 165 | 228 | 354 | 4.31e-24 | 96.7 |
| MsG0680034725.01.T01 | MTR_4g021350 | 44.000 | 100 | 54 | 1 | 39 | 138 | 188 | 285 | 1.91e-21 | 88.2 |
| MsG0680034725.01.T01 | MTR_7g070500 | 34.677 | 124 | 75 | 3 | 42 | 162 | 198 | 318 | 2.08e-20 | 86.3 |
| MsG0680034725.01.T01 | MTR_7g070500 | 35.714 | 98 | 60 | 1 | 42 | 139 | 198 | 292 | 5.45e-16 | 73.9 |
| MsG0680034725.01.T01 | MTR_4g072060 | 37.383 | 107 | 62 | 2 | 39 | 142 | 190 | 294 | 6.68e-15 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680034725.01.T01 | AT1G59950 | 46.094 | 128 | 68 | 1 | 39 | 165 | 193 | 320 | 5.76e-36 | 127 |
| MsG0680034725.01.T01 | AT1G59960 | 44.531 | 128 | 70 | 1 | 39 | 165 | 199 | 326 | 8.67e-35 | 124 |
| MsG0680034725.01.T01 | AT2G37790 | 45.669 | 127 | 69 | 0 | 39 | 165 | 188 | 314 | 3.98e-33 | 119 |
| MsG0680034725.01.T01 | AT2G37770 | 42.969 | 128 | 72 | 1 | 39 | 165 | 188 | 315 | 4.19e-29 | 109 |
| MsG0680034725.01.T01 | AT3G53880 | 42.188 | 128 | 73 | 1 | 39 | 165 | 188 | 315 | 1.47e-27 | 105 |
| MsG0680034725.01.T01 | AT2G37760 | 42.969 | 128 | 72 | 1 | 39 | 165 | 138 | 265 | 2.14e-27 | 103 |
| MsG0680034725.01.T01 | AT2G37760 | 42.969 | 128 | 72 | 1 | 39 | 165 | 138 | 265 | 2.14e-27 | 103 |
| MsG0680034725.01.T01 | AT2G37760 | 42.969 | 128 | 72 | 1 | 39 | 165 | 184 | 311 | 3.36e-27 | 103 |
| MsG0680034725.01.T01 | AT2G37760 | 42.969 | 128 | 72 | 1 | 39 | 165 | 184 | 311 | 3.36e-27 | 103 |
| MsG0680034725.01.T01 | AT5G62420 | 39.062 | 128 | 77 | 1 | 39 | 165 | 189 | 316 | 2.38e-24 | 96.7 |
| MsG0680034725.01.T01 | AT2G37760 | 44.762 | 105 | 58 | 0 | 39 | 143 | 184 | 288 | 2.10e-23 | 93.6 |
| MsG0680034725.01.T01 | AT2G37760 | 44.118 | 102 | 57 | 0 | 39 | 140 | 184 | 285 | 4.19e-22 | 90.1 |
| MsG0680034725.01.T01 | AT2G37760 | 44.118 | 102 | 57 | 0 | 39 | 140 | 184 | 285 | 4.19e-22 | 90.1 |
| MsG0680034725.01.T01 | AT3G53880 | 37.963 | 108 | 67 | 0 | 39 | 146 | 188 | 295 | 1.51e-20 | 86.3 |
| MsG0680034725.01.T01 | AT5G01670 | 30.645 | 124 | 80 | 3 | 42 | 162 | 199 | 319 | 5.17e-17 | 77.0 |
| MsG0680034725.01.T01 | AT5G01670 | 30.159 | 126 | 82 | 3 | 42 | 164 | 226 | 348 | 6.61e-17 | 76.6 |
| MsG0680034725.01.T01 | AT2G21250 | 33.962 | 106 | 67 | 1 | 39 | 141 | 190 | 295 | 3.02e-15 | 72.0 |
| MsG0680034725.01.T01 | AT2G21260 | 33.645 | 107 | 66 | 2 | 39 | 142 | 122 | 226 | 3.84e-15 | 70.9 |
| MsG0680034725.01.T01 | AT2G21260 | 33.645 | 107 | 66 | 2 | 39 | 142 | 190 | 294 | 8.63e-15 | 70.5 |
Find 32 sgRNAs with CRISPR-Local
Find 97 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTGCACTTGATCCTATT+TGG | 0.173664 | 6:+93467423 | None:intergenic |
| TACAAGGTAACTTGGGGTTC+AGG | 0.340873 | 6:-93467694 | MsG0680034725.01.T01:CDS |
| CGGCGGTTCATTCTCCACTA+TGG | 0.343338 | 6:+93468558 | None:intergenic |
| GTCTTGGCAATCCTTGAAAA+AGG | 0.349015 | 6:+93468502 | None:intergenic |
| GATATGTGGCTATCTGAAAA+TGG | 0.353884 | 6:-93467284 | MsG0680034725.01.T01:CDS |
| GTTAGTGCTTGGTCAGCTCT+TGG | 0.379055 | 6:-93467721 | MsG0680034725.01.T01:CDS |
| GCAAGACCTTAGAAGAACTT+TGG | 0.387987 | 6:-93467256 | MsG0680034725.01.T01:CDS |
| CTCAGATGGGTGTACCAAAT+AGG | 0.401163 | 6:-93467437 | MsG0680034725.01.T01:CDS |
| CAAGACCTTAGAAGAACTTT+GGG | 0.404358 | 6:-93467255 | MsG0680034725.01.T01:CDS |
| TCCATCCCAAAGTTCTTCTA+AGG | 0.411991 | 6:+93467250 | None:intergenic |
| GTCAGCTCTTGGAGCTTACA+AGG | 0.458395 | 6:-93467710 | MsG0680034725.01.T01:CDS |
| TGGAGCTTACAAGGTAACTT+GGG | 0.460759 | 6:-93467701 | MsG0680034725.01.T01:CDS |
| TTGGAGCTTACAAGGTAACT+TGG | 0.467883 | 6:-93467702 | MsG0680034725.01.T01:CDS |
| CACACCTCTTAACAAAGTCT+TGG | 0.493066 | 6:+93468486 | None:intergenic |
| ATTGCCAAGACTTTGTTAAG+AGG | 0.505576 | 6:-93468490 | MsG0680034725.01.T01:intron |
| AAGGAATTCATGTTAGTGCT+TGG | 0.521655 | 6:-93467732 | MsG0680034725.01.T01:CDS |
| GCTCAAAATCAAATATATCA+AGG | 0.524507 | 6:+93467366 | None:intergenic |
| CAAGACATAGCAGCAACTAA+AGG | 0.527172 | 6:-93467646 | MsG0680034725.01.T01:CDS |
| ACCTTAGAAGAACTTTGGGA+TGG | 0.559848 | 6:-93467251 | MsG0680034725.01.T01:CDS |
| TTGGGGTTCAGGAGCTGTCG+TGG | 0.569033 | 6:-93467683 | MsG0680034725.01.T01:CDS |
| CTAAAAGCTTTAACAAGGAG+AGG | 0.572880 | 6:-93467400 | MsG0680034725.01.T01:CDS |
| CCACAGCGAAGGCAATACTT+AGG | 0.575425 | 6:-93467308 | MsG0680034725.01.T01:CDS |
| GGCAATACTTAGGAGATATG+TGG | 0.599159 | 6:-93467298 | MsG0680034725.01.T01:CDS |
| GGAGCTTACAAGGTAACTTG+GGG | 0.599419 | 6:-93467700 | MsG0680034725.01.T01:CDS |
| CCAAATAGGATCAAGTGCAA+TGG | 0.616665 | 6:-93467423 | MsG0680034725.01.T01:CDS |
| TTAAGCAGATTCCACAGCGA+AGG | 0.618267 | 6:-93467319 | MsG0680034725.01.T01:CDS |
| CGGTTCATTCTCCACTATGG+TGG | 0.622981 | 6:+93468561 | None:intergenic |
| ATCCCAGCAAGGAAAACTGA+GGG | 0.641700 | 6:-93467770 | MsG0680034725.01.T01:CDS |
| CCTAAGTATTGCCTTCGCTG+TGG | 0.646016 | 6:+93467308 | None:intergenic |
| AATCCCAGCAAGGAAAACTG+AGG | 0.667618 | 6:-93467771 | MsG0680034725.01.T01:CDS |
| AATGGCTAAAAGCTTTAACA+AGG | 0.667938 | 6:-93467405 | MsG0680034725.01.T01:CDS |
| GGTGGAGATGAATCCCAGCA+AGG | 0.681549 | 6:-93467781 | MsG0680034725.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATATTAATAAAATTTTTA+GGG | + | Chr6:93467566-93467585 | None:intergenic | 0.0% |
| !! | AATAATTCTAATATTCAATT+TGG | - | Chr6:93467666-93467685 | MsG0680034725.01.T01:CDS | 10.0% |
| !! | TTATAAATTGTGTTTATAAA+TGG | - | Chr6:93468213-93468232 | MsG0680034725.01.T01:intron | 10.0% |
| !! | AGTGTAAAAAAATAGCAATT+TGG | - | Chr6:93467750-93467769 | MsG0680034725.01.T01:CDS | 20.0% |
| !! | TATATTAATTCATGTCATGA+TGG | - | Chr6:93468320-93468339 | MsG0680034725.01.T01:intron | 20.0% |
| !!! | AAATTGATCTGAACTTTTAA+TGG | + | Chr6:93467900-93467919 | None:intergenic | 20.0% |
| !!! | GTGATTATGAAGTTAAATTT+TGG | - | Chr6:93467994-93468013 | MsG0680034725.01.T01:intron | 20.0% |
| !!! | TAAATTTTGGTTTCTTTTTC+AGG | - | Chr6:93468007-93468026 | MsG0680034725.01.T01:intron | 20.0% |
| ! | AACTTCAATGATTCATGTTA+AGG | + | Chr6:93467394-93467413 | None:intergenic | 25.0% |
| ! | ATCGGTTAAAAATAGCAATT+TGG | - | Chr6:93467724-93467743 | MsG0680034725.01.T01:CDS | 25.0% |
| ! | GCTCAAAATCAAATATATCA+AGG | + | Chr6:93468446-93468465 | None:intergenic | 25.0% |
| ! | TATATGGAGAAAAGAGTAAT+AGG | + | Chr6:93467463-93467482 | None:intergenic | 25.0% |
| !! | ATTTTATCGAACTGTTATGA+CGG | - | Chr6:93467916-93467935 | MsG0680034725.01.T01:intron | 25.0% |
| !! | CACATTATGATTTCATTTTC+AGG | - | Chr6:93468344-93468363 | MsG0680034725.01.T01:intron | 25.0% |
| !! | GATTTTTGTAAAGATAGTTC+CGG | - | Chr6:93467823-93467842 | MsG0680034725.01.T01:intron | 25.0% |
| AAGTTGAACCATTTGATTGT+TGG | - | Chr6:93467409-93467428 | MsG0680034725.01.T01:CDS | 30.0% | |
| ACTAAACAGTTATACCAGTT+TGG | - | Chr6:93467868-93467887 | MsG0680034725.01.T01:intron | 30.0% | |
| AGTTGAACCATTTGATTGTT+GGG | - | Chr6:93467410-93467429 | MsG0680034725.01.T01:CDS | 30.0% | |
| ATAGCAATTTGGTACAGTTT+CGG | - | Chr6:93467761-93467780 | MsG0680034725.01.T01:CDS | 30.0% | |
| ATTTCAACAGTCCTAGTAAT+CGG | - | Chr6:93467706-93467725 | MsG0680034725.01.T01:CDS | 30.0% | |
| ! | AATGGCTAAAAGCTTTAACA+AGG | - | Chr6:93468404-93468423 | MsG0680034725.01.T01:intron | 30.0% |
| !!! | ATTTTGGTTTCTTTTTCAGG+TGG | - | Chr6:93468010-93468029 | MsG0680034725.01.T01:intron | 30.0% |
| !!! | GCTATTTTTAACCGATTACT+AGG | + | Chr6:93467720-93467739 | None:intergenic | 30.0% |
| AAGGAATTCATGTTAGTGCT+TGG | - | Chr6:93468077-93468096 | MsG0680034725.01.T01:intron | 35.0% | |
| AGAAATGTCGTAACTCGTAA+GGG | + | Chr6:93468276-93468295 | None:intergenic | 35.0% | |
| AGTCAACACACACAAGTATA+TGG | + | Chr6:93467479-93467498 | None:intergenic | 35.0% | |
| ATTGCCAAGACTTTGTTAAG+AGG | - | Chr6:93467319-93467338 | MsG0680034725.01.T01:CDS | 35.0% | |
| CAAGACCTTAGAAGAACTTT+GGG | - | Chr6:93468554-93468573 | MsG0680034725.01.T01:CDS | 35.0% | |
| CATTACTGTACTGTTCAGTT+CGG | - | Chr6:93467629-93467648 | MsG0680034725.01.T01:intron | 35.0% | |
| CGAATACGAGTGTTCATTTA+TGG | + | Chr6:93467975-93467994 | None:intergenic | 35.0% | |
| GATATGTGGCTATCTGAAAA+TGG | - | Chr6:93468525-93468544 | MsG0680034725.01.T01:CDS | 35.0% | |
| GGAGAAAAGAGTAATAGGAA+GGG | + | Chr6:93467458-93467477 | None:intergenic | 35.0% | |
| GGTATAACTGTTTAGTGTAC+TGG | + | Chr6:93467864-93467883 | None:intergenic | 35.0% | |
| GGTCATGTAGATGATAAAAG+TGG | - | Chr6:93468234-93468253 | MsG0680034725.01.T01:intron | 35.0% | |
| GTTGAACCATTTGATTGTTG+GGG | - | Chr6:93467411-93467430 | MsG0680034725.01.T01:CDS | 35.0% | |
| TAAAGGAAAAACTACAGCTC+AGG | - | Chr6:93468180-93468199 | MsG0680034725.01.T01:intron | 35.0% | |
| TAGAAATGTTACCTGTCCTT+TGG | + | Chr6:93467356-93467375 | None:intergenic | 35.0% | |
| TGGAGAAAAGAGTAATAGGA+AGG | + | Chr6:93467459-93467478 | None:intergenic | 35.0% | |
| TTTAATGGTTCGTACCAAAC+TGG | + | Chr6:93467885-93467904 | None:intergenic | 35.0% | |
| ! | AAAACTGAGGGAATTTTGCA+AGG | - | Chr6:93468051-93468070 | MsG0680034725.01.T01:intron | 35.0% |
| ! | CTAAAAGCTTTAACAAGGAG+AGG | - | Chr6:93468409-93468428 | MsG0680034725.01.T01:intron | 35.0% |
| ! | TGTTGACTATGTCACCAAAT+GGG | - | Chr6:93467491-93467510 | MsG0680034725.01.T01:intron | 35.0% |
| !!! | TGTTGGGGCATTGATTTTAT+GGG | - | Chr6:93467426-93467445 | MsG0680034725.01.T01:CDS | 35.0% |
| !!! | TTGTTGGGGCATTGATTTTA+TGG | - | Chr6:93467425-93467444 | MsG0680034725.01.T01:CDS | 35.0% |
| CAAGACATAGCAGCAACTAA+AGG | - | Chr6:93468163-93468182 | MsG0680034725.01.T01:intron | 40.0% | |
| CACACCTCTTAACAAAGTCT+TGG | + | Chr6:93467326-93467345 | None:intergenic | 40.0% | |
| CAGAAATGTCGTAACTCGTA+AGG | + | Chr6:93468277-93468296 | None:intergenic | 40.0% | |
| CCAAATAGGATCAAGTGCAA+TGG | - | Chr6:93468386-93468405 | MsG0680034725.01.T01:intron | 40.0% | |
| CCATTGCACTTGATCCTATT+TGG | + | Chr6:93468389-93468408 | None:intergenic | 40.0% | |
| CGGTTCACAAAGATTCAGTT+TGG | - | Chr6:93467781-93467800 | MsG0680034725.01.T01:CDS | 40.0% | |
| GATCGTCTATTAGCAACACA+AGG | + | Chr6:93467528-93467547 | None:intergenic | 40.0% | |
| GCAAGACCTTAGAAGAACTT+TGG | - | Chr6:93468553-93468572 | MsG0680034725.01.T01:CDS | 40.0% | |
| GGACAGGTAACATTTCTAAG+AGG | - | Chr6:93467358-93467377 | MsG0680034725.01.T01:CDS | 40.0% | |
| GGCAATACTTAGGAGATATG+TGG | - | Chr6:93468511-93468530 | MsG0680034725.01.T01:CDS | 40.0% | |
| GTCTTGGCAATCCTTGAAAA+AGG | + | Chr6:93467310-93467329 | None:intergenic | 40.0% | |
| TCAATGCCCCAACAATCAAA+TGG | + | Chr6:93467420-93467439 | None:intergenic | 40.0% | |
| TCCATCCCAAAGTTCTTCTA+AGG | + | Chr6:93468562-93468581 | None:intergenic | 40.0% | |
| TGCTAATAGACGATCCAACT+AGG | - | Chr6:93467533-93467552 | MsG0680034725.01.T01:intron | 40.0% | |
| TGGAGCTTACAAGGTAACTT+GGG | - | Chr6:93468108-93468127 | MsG0680034725.01.T01:intron | 40.0% | |
| TGGCAATCCTTGAAAAAGGT+GGG | + | Chr6:93467306-93467325 | None:intergenic | 40.0% | |
| TGTGATAAATGCCAAAGGAC+AGG | - | Chr6:93467342-93467361 | MsG0680034725.01.T01:CDS | 40.0% | |
| TTGGAGCTTACAAGGTAACT+TGG | - | Chr6:93468107-93468126 | MsG0680034725.01.T01:intron | 40.0% | |
| TTGGCAATCCTTGAAAAAGG+TGG | + | Chr6:93467307-93467326 | None:intergenic | 40.0% | |
| ! | AAGTTTTGCAAAGTGGCTTC+TGG | - | Chr6:93467277-93467296 | MsG0680034725.01.T01:CDS | 40.0% |
| ! | ACCTTAGAAGAACTTTGGGA+TGG | - | Chr6:93468558-93468577 | MsG0680034725.01.T01:CDS | 40.0% |
| ! | ACTTTGCAAAACTTTTGCGG+CGG | + | Chr6:93467271-93467290 | None:intergenic | 40.0% |
| ! | AGAGGTGTGATAAATGCCAA+AGG | - | Chr6:93467337-93467356 | MsG0680034725.01.T01:CDS | 40.0% |
| ! | AGGGAATTTTGCAAGGAGAA+AGG | - | Chr6:93468058-93468077 | MsG0680034725.01.T01:intron | 40.0% |
| ! | TGTTTAGTGTACTGGTGTAG+TGG | + | Chr6:93467856-93467875 | None:intergenic | 40.0% |
| !! | GCCACTTTGCAAAACTTTTG+CGG | + | Chr6:93467274-93467293 | None:intergenic | 40.0% |
| !! | GTGTTGACTATGTCACCAAA+TGG | - | Chr6:93467490-93467509 | MsG0680034725.01.T01:intron | 40.0% |
| !!! | ATTTTCAGGTTGCACTCAGA+TGG | - | Chr6:93468358-93468377 | MsG0680034725.01.T01:intron | 40.0% |
| !!! | TTTTCAGGTTGCACTCAGAT+GGG | - | Chr6:93468359-93468378 | MsG0680034725.01.T01:intron | 40.0% |
| AATCCCAGCAAGGAAAACTG+AGG | - | Chr6:93468038-93468057 | MsG0680034725.01.T01:intron | 45.0% | |
| AGGTAACGCTTCAACCCATT+TGG | + | Chr6:93467508-93467527 | None:intergenic | 45.0% | |
| ATCCCAGCAAGGAAAACTGA+GGG | - | Chr6:93468039-93468058 | MsG0680034725.01.T01:intron | 45.0% | |
| CTCAGATGGGTGTACCAAAT+AGG | - | Chr6:93468372-93468391 | MsG0680034725.01.T01:intron | 45.0% | |
| CTGGTGTAGTGGTTCTTAAC+CGG | + | Chr6:93467845-93467864 | None:intergenic | 45.0% | |
| GGAGCTTACAAGGTAACTTG+GGG | - | Chr6:93468109-93468128 | MsG0680034725.01.T01:intron | 45.0% | |
| TACAAGGTAACTTGGGGTTC+AGG | - | Chr6:93468115-93468134 | MsG0680034725.01.T01:intron | 45.0% | |
| TTAAGCAGATTCCACAGCGA+AGG | - | Chr6:93468490-93468509 | MsG0680034725.01.T01:intron | 45.0% | |
| ! | ATTCCCTCAGTTTTCCTTGC+TGG | + | Chr6:93468045-93468064 | None:intergenic | 45.0% |
| ! | GCCGCAAAAGTTTTGCAAAG+TGG | - | Chr6:93467270-93467289 | MsG0680034725.01.T01:CDS | 45.0% |
| ! | TTCCCTCAGTTTTCCTTGCT+GGG | + | Chr6:93468044-93468063 | None:intergenic | 45.0% |
| ! | TTTTGCAAAGTGGCTTCTGG+TGG | - | Chr6:93467280-93467299 | MsG0680034725.01.T01:CDS | 45.0% |
| !! | TTTAGGGGTGTCAACCTAGT+TGG | + | Chr6:93467550-93467569 | None:intergenic | 45.0% |
| !!! | AATATTAATAAAATTTTTAG+GGG | + | Chr6:93467565-93467584 | None:intergenic | 5.0% |
| !!! | GTAATATTAATAAAATTTTT+AGG | + | Chr6:93467567-93467586 | None:intergenic | 5.0% |
| CCACAGCGAAGGCAATACTT+AGG | - | Chr6:93468501-93468520 | MsG0680034725.01.T01:CDS | 50.0% | |
| CGGTTCATTCTCCACTATGG+TGG | + | Chr6:93467251-93467270 | None:intergenic | 50.0% | |
| GTCAGCTCTTGGAGCTTACA+AGG | - | Chr6:93468099-93468118 | MsG0680034725.01.T01:intron | 50.0% | |
| GTTAGTGCTTGGTCAGCTCT+TGG | - | Chr6:93468088-93468107 | MsG0680034725.01.T01:intron | 50.0% | |
| ! | CCTAAGTATTGCCTTCGCTG+TGG | + | Chr6:93468504-93468523 | None:intergenic | 50.0% |
| CGGCGGTTCATTCTCCACTA+TGG | + | Chr6:93467254-93467273 | None:intergenic | 55.0% | |
| GGTGGAGATGAATCCCAGCA+AGG | - | Chr6:93468028-93468047 | MsG0680034725.01.T01:intron | 55.0% | |
| !! | CTGGTGGCCCACCTTTTTCA+AGG | - | Chr6:93467296-93467315 | MsG0680034725.01.T01:CDS | 55.0% |
| TTGGGGTTCAGGAGCTGTCG+TGG | - | Chr6:93468126-93468145 | MsG0680034725.01.T01:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr6 | gene | 93467241 | 93468590 | 93467241 | ID=MsG0680034725.01;Name=MsG0680034725.01 |
| Chr6 | mRNA | 93467241 | 93468590 | 93467241 | ID=MsG0680034725.01.T01;Parent=MsG0680034725.01;Name=MsG0680034725.01.T01;_AED=0.50;_eAED=0.62;_QI=0|0|0|1|1|1|3|0|165 |
| Chr6 | exon | 93468491 | 93468590 | 93468491 | ID=MsG0680034725.01.T01:exon:30210;Parent=MsG0680034725.01.T01 |
| Chr6 | exon | 93467630 | 93467802 | 93467630 | ID=MsG0680034725.01.T01:exon:30209;Parent=MsG0680034725.01.T01 |
| Chr6 | exon | 93467241 | 93467465 | 93467241 | ID=MsG0680034725.01.T01:exon:30208;Parent=MsG0680034725.01.T01 |
| Chr6 | CDS | 93468491 | 93468590 | 93468491 | ID=MsG0680034725.01.T01:cds;Parent=MsG0680034725.01.T01 |
| Chr6 | CDS | 93467630 | 93467802 | 93467630 | ID=MsG0680034725.01.T01:cds;Parent=MsG0680034725.01.T01 |
| Chr6 | CDS | 93467241 | 93467465 | 93467241 | ID=MsG0680034725.01.T01:cds;Parent=MsG0680034725.01.T01 |
| Gene Sequence |
| Protein sequence |
