AlfalfaGEDB | MsG0480021101.01

M. sativa cultivar ZhongmuNo.1 / MsG0480021101.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021101.01.T01	XP_013456230.1	90.65	492	14	1	4	463	97	588	0	909

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021101.01.T01	Q9LXU9	51.515	495	179	14	4	461	90	560	1.94E-160	468

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021101.01.T01	A0A072ULJ6	90.650	492	14	1	4	463	97	588	0.0	909

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048507.01	MsG0480021101.01	-0.804304	2.303515e-49	1.183615e-46
MsG0080048727.01	MsG0480021101.01	0.831938	1.257086e-55	1.384643e-52
MsG0080048845.01	MsG0480021101.01	0.808182	3.511899e-50	1.994621e-47
MsG0080049070.01	MsG0480021101.01	0.834225	3.389650e-56	3.996700e-53
MsG0180000017.01	MsG0480021101.01	0.820370	7.110878e-53	5.615943e-50
MsG0180000489.01	MsG0480021101.01	0.839620	1.421033e-57	1.973362e-54
MsG0180000491.01	MsG0480021101.01	0.834478	2.928021e-56	3.479110e-53
MsG0180000549.01	MsG0480021101.01	0.881315	2.658547e-70	1.550019e-66
MsG0180000793.01	MsG0480021101.01	0.815847	7.495047e-52	5.225410e-49
MsG0180000833.01	MsG0480021101.01	0.801799	7.592665e-49	3.659240e-46

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021101.01.T01	MTR_4g066010	90.650	492	14	1	4	463	97	588	0.0	909
MsG0480021101.01.T01	MTR_2g098420	67.206	494	113	12	4	452	91	580	0.0	616
MsG0480021101.01.T01	MTR_8g106210	39.542	306	167	3	172	459	150	455	1.71e-71	234

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021101.01.T01	AT5G12900	51.515	495	179	14	4	461	90	560	1.98e-161	468
MsG0480021101.01.T01	AT1G12330	34.679	421	245	10	57	458	63	472	1.08e-69	230

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Find 96 sgRNAs with CRISPR-Local

Find 116 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAGTGTACAAGATTAC+AGG	0.381028	4:+53479747	MsG0480021101.01.T01:CDS
AAACGACGAGTGGGAATCCG+TGG	0.621697	4:-53480053	None:intergenic
AAAGCAAAGGGGTGATTTCG+TGG	0.524133	4:+53480089	MsG0480021101.01.T01:CDS
AAAGCTTGAAGAAGCTGCTC+AGG	0.463394	4:-53480924	None:intergenic
AAAGGGATACTACTACCTTG+TGG	0.671368	4:+53479788	MsG0480021101.01.T01:CDS
AAATGCAATTCTCAAAGTCT+TGG	0.511355	4:-53480701	None:intergenic
AACCAGTGTACAAGATTACA+GGG	0.611795	4:+53479748	MsG0480021101.01.T01:CDS
AACTCACTAGTTATGATTGC+AGG	0.324702	4:-53479986	None:intergenic
AATCCATGCAGACGCAGGCA+AGG	0.561183	4:+53480368	MsG0480021101.01.T01:CDS
AATCTTTGATCATCGCTATA+TGG	0.373925	4:+53481037	MsG0480021101.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGCAATTCTCAAAGTCT+TGG	-	Chr4:53480704-53480723	None:intergenic	30.0%
AATCTTTGATCATCGCTATA+TGG	+	Chr4:53481037-53481056	MsG0480021101.01.T01:CDS	30.0%
AATGAGGAAGTAATGATAGA+GGG	+	Chr4:53480480-53480499	MsG0480021101.01.T01:intron	30.0%
CTATCTTTAACATAAAACCC+TGG	-	Chr4:53481116-53481135	None:intergenic	30.0%
GAATTTAGAGACAGCTTATA+CGG	-	Chr4:53480624-53480643	None:intergenic	30.0%
GATAAACCAAGTTCAAGAAA+AGG	+	Chr4:53479770-53479789	MsG0480021101.01.T01:CDS	30.0%
TAAGAGAAGAAACAGTTTAG+AGG	+	Chr4:53479928-53479947	MsG0480021101.01.T01:CDS	30.0%
TCTAAATTCCAAGTACTCAA+AGG	+	Chr4:53480635-53480654	MsG0480021101.01.T01:CDS	30.0%
TTAAGATCATGGTTAATCCA+GGG	+	Chr4:53481096-53481115	MsG0480021101.01.T01:CDS	30.0%
AAACCAGTGTACAAGATTAC+AGG	+	Chr4:53479747-53479766	MsG0480021101.01.T01:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	53479695	53481181	53479695	ID=MsG0480021101.01;Name=MsG0480021101.01
Chr4	mRNA	53479695	53481181	53479695	ID=MsG0480021101.01.T01;Parent=MsG0480021101.01;Name=MsG0480021101.01.T01;_AED=0.16;_eAED=0.16;_QI=0\|0\|0\|1\|1\|1\|2\|0\|463
Chr4	exon	53479695	53480421	53479695	ID=MsG0480021101.01.T01:exon:2959;Parent=MsG0480021101.01.T01
Chr4	exon	53480517	53481181	53480517	ID=MsG0480021101.01.T01:exon:2960;Parent=MsG0480021101.01.T01
Chr4	CDS	53479695	53480421	53479695	ID=MsG0480021101.01.T01:cds;Parent=MsG0480021101.01.T01
Chr4	CDS	53480517	53481181	53480517	ID=MsG0480021101.01.T01:cds;Parent=MsG0480021101.01.T01

Gene Sequence

>MsG0480021101.01.T01

ATGCCTAACATATCTGAAAGTTGGGATGAAGGAGAATCAGGAAACAGCATAGAAACCAGTGTACAAGATTACAGGGATAAACCAAGTTCAAGAAAAGGGATACTACTACCTTGTGGTTTTACCAACCTAGAATCTCACACATCTCTTGTTGATGACACCAAATCCGTAACCGGCTCTTGTGCAAATCATATAACTGTTCTTCAAACATCACCTACCAATGAAAGCTACAGGAGTAAGAGAAGAAACAGTTTAGAGGATTCTAAATCAGTGTCATCCTGCAATAAATGTAACCCTGCAATCATAACTAGTGAGTTGGAGAGTGCAAGGAACAGCAAGAGCTCCAATATTGTTGTTCCTGCCACGGATTCCCACTCGTCGTTTCAGTCTGAAACGAAAAGCAAAGGGGTGATTTCGTGGTTGTTTCCTCGGTTAAAGAAGAAGCATAAGAATGAGAATTCTCCAAATAGAGCAGAATCTGAGGATGTTTCTCTGGTTCTCAAGGACATAGGAATAATGTCGATTGAGGCATTGAAGAAAGAGTTGATAGAAGCGAACGAGAATAGAGATGTGGCGTTGGTGGAAGTTTCTGAGATGCGATGTTCATTGGGAGAGTTGAGACAGAAGATGGAGTACTTGGAGAATTACTGTGAAGAGCTGAAGAAAGCTTTGAAACAATCCATGCAGACGCAGGCAAGGGATTCTCAACTTTGTGAACAGATTAAGCTCATGTCAGAGTCAAGATTATCAGTAAAGCAGTTCTGTAAAAACCTTATAAACAACATTGAAGAAACTGATCACCCATTGACAGAAAATTTGAACTCGCTTCTTCAACCGTATAAGCTGTCTCTAAATTCCAAGTACTCAAAGGCAGTTCTGTACCATTTTGAAGCTTTCATAAATCAGGCTCTCTACCAAGACTTTGAGAATTGCATTTTTCAAAAGAACGGATGCCCAAAATTCATTGACCGTCATGAAGACCGCCAAGCGAAATTCTCGTCATTCGTTGCTCTTAGGAATTTGAGCTGGAATGAAGTACTGAGAAAGGGAACAAAATATTACAGTGAAGAGTTTAGCAAGTTTTGTGATCAGAAAATGAGTTGCATTACCACTACTCTAAATTGGATTAGGCCTTGGCCTGAGCAGCTTCTTCAAGCTTTCTTTGTGGCTGCAAAGTGCATGTGGTTGCTACATTTGCTTGCATTTTCTTTCAACCCACCATTGGGAGTTTTAAGGGTTGAAGAGAATAGAATCTTTGATCATCGCTATATGGAAGATATGAGCCCAAGGTCACAGGGTCCAAGCAAAGTTAAGATCATGGTTAATCCAGGGTTTTATGTTAAAGATAGGGTATTAAGGTGTAAGGTCCTTTGCAGGTACAAATCCACAGCCTAA

Protein sequence

>MsG0480021101.01.T01

MPNISESWDEGESGNSIETSVQDYRDKPSSRKGILLPCGFTNLESHTSLVDDTKSVTGSCANHITVLQTSPTNESYRSKRRNSLEDSKSVSSCNKCNPAIITSELESARNSKSSNIVVPATDSHSSFQSETKSKGVISWLFPRLKKKHKNENSPNRAESEDVSLVLKDIGIMSIEALKKELIEANENRDVALVEVSEMRCSLGELRQKMEYLENYCEELKKALKQSMQTQARDSQLCEQIKLMSESRLSVKQFCKNLINNIEETDHPLTENLNSLLQPYKLSLNSKYSKAVLYHFEAFINQALYQDFENCIFQKNGCPKFIDRHEDRQAKFSSFVALRNLSWNEVLRKGTKYYSEEFSKFCDQKMSCITTTLNWIRPWPEQLLQAFFVAAKCMWLLHLLAFSFNPPLGVLRVEENRIFDHRYMEDMSPRSQGPSKVKIMVNPGFYVKDRVLRCKVLCRYKSTA*