AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480019046.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480019046.01.T01 MTR_4g022800 77.427 443 52 4 1 395 1 443 0.0 682
MsG0480019046.01.T01 MTR_4g022720 76.923 442 49 4 1 395 1 436 0.0 674
MsG0480019046.01.T01 MTR_7g026860 75.566 442 58 3 1 395 1 439 0.0 671
MsG0480019046.01.T01 MTR_4g022670 72.851 442 73 2 1 395 1 442 0.0 645
MsG0480019046.01.T01 MTR_4g022825 65.986 441 102 3 1 394 1 440 0.0 576
MsG0480019046.01.T01 MTR_4g022760 65.837 442 60 4 1 395 1 398 0.0 549
MsG0480019046.01.T01 MTR_3g088420 59.955 442 122 4 1 395 1 434 0.0 514
MsG0480019046.01.T01 MTR_3g026310 58.575 449 132 4 1 395 1 449 2.65e-177 501
MsG0480019046.01.T01 MTR_0190s0020 51.770 452 150 9 1 394 1 442 2.59e-149 430
MsG0480019046.01.T01 MTR_8g041770 51.214 453 152 8 1 395 1 442 1.99e-148 428
MsG0480019046.01.T01 MTR_6g016815 53.056 409 137 8 1 395 15 382 1.63e-134 390
MsG0480019046.01.T01 MTR_4g094842 49.453 457 155 13 1 392 1 446 3.76e-132 387
MsG0480019046.01.T01 MTR_4g094835 44.835 455 173 9 1 390 1 442 1.95e-126 372
MsG0480019046.01.T01 MTR_4g094828 46.638 461 168 13 1 394 1 450 1.32e-123 365
MsG0480019046.01.T01 MTR_4g022290 45.098 459 169 15 1 392 1 443 4.03e-115 343
MsG0480019046.01.T01 MTR_8g079710 45.023 442 180 12 1 385 1 436 2.99e-113 338
MsG0480019046.01.T01 MTR_4g094838 42.232 457 165 11 4 390 1 428 1.47e-108 326
MsG0480019046.01.T01 MTR_4g094832 46.736 383 130 7 69 390 57 426 5.67e-105 317
MsG0480019046.01.T01 MTR_7g026850 79.042 167 35 0 29 195 12 178 3.98e-93 277
MsG0480019046.01.T01 MTR_8g040760 63.850 213 70 3 1 207 1 212 7.20e-89 268
MsG0480019046.01.T01 MTR_3g101900 35.780 436 210 12 18 394 24 448 1.63e-69 226
MsG0480019046.01.T01 MTR_3g101930 35.056 445 210 12 16 393 22 454 7.02e-69 224
MsG0480019046.01.T01 MTR_3g102020 35.747 442 210 12 16 394 21 451 8.35e-68 222
MsG0480019046.01.T01 MTR_3g101960 35.321 436 209 11 16 389 21 445 6.63e-66 217
MsG0480019046.01.T01 MTR_3g102010 34.921 441 214 12 16 394 22 451 5.16e-65 214
MsG0480019046.01.T01 MTR_3g101970 34.396 439 204 11 16 393 21 436 6.31e-65 214
MsG0480019046.01.T01 MTR_4g094825 50.794 189 84 5 17 199 84 269 1.27e-50 175
MsG0480019046.01.T01 MTR_4g094825 54.098 122 54 1 275 394 270 391 1.41e-36 137
MsG0480019046.01.T01 MTR_6g034495 66.387 119 37 1 64 179 43 161 4.26e-47 159
MsG0480019046.01.T01 MTR_8g040780 43.318 217 72 4 224 389 11 227 1.03e-46 160
MsG0480019046.01.T01 MTR_7g026830 87.059 85 11 0 82 166 14 98 2.27e-46 154
MsG0480019046.01.T01 MTR_7g026770 64.463 121 15 1 141 261 132 224 9.40e-42 149
MsG0480019046.01.T01 MTR_7g026780 65.179 112 13 2 285 395 26 112 2.73e-40 139
MsG0480019046.01.T01 MTR_3g102030 32.588 313 156 9 73 350 28 320 8.21e-38 139
MsG0480019046.01.T01 MTR_7g026800 52.899 138 46 3 212 330 19 156 7.23e-35 127
MsG0480019046.01.T01 MTR_4g022780 50.658 152 53 5 200 330 7 157 2.93e-34 125
MsG0480019046.01.T01 MTR_4g015180 37.398 246 127 7 16 251 19 247 3.52e-30 121
MsG0480019046.01.T01 MTR_4g015180 38.261 115 67 3 285 396 376 489 6.56e-17 82.8
MsG0480019046.01.T01 MTR_3g070170 34.025 241 140 5 16 254 25 248 1.72e-28 116
MsG0480019046.01.T01 MTR_6g045553 25.636 472 252 16 4 390 14 471 5.96e-28 115
MsG0480019046.01.T01 MTR_5g081960 34.836 244 134 8 16 253 19 243 9.25e-27 112
MsG0480019046.01.T01 MTR_5g081960 27.778 216 138 8 191 394 277 486 3.52e-16 80.5
MsG0480019046.01.T01 MTR_7g026880 71.154 52 15 0 343 394 2 53 1.46e-20 84.7
MsG0480019046.01.T01 MTR_6g034485 53.425 73 26 1 189 261 2 66 4.10e-16 74.7
MsG0480019046.01.T01 MTR_7g026870 93.939 33 2 0 272 304 119 151 1.89e-13 67.8
MsG0480019046.01.T01 MTR_7g114560 33.103 145 82 7 41 178 48 184 1.13e-11 66.6
MsG0480019046.01.T01 MTR_8g096530 28.571 224 129 8 50 262 54 257 8.80e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480019046.01.T01 AT5G67150 35.088 456 222 14 1 393 1 445 1.16e-73 237
MsG0480019046.01.T01 AT3G50300 37.045 440 196 16 1 375 1 424 2.72e-73 236
MsG0480019046.01.T01 AT5G67160 34.537 443 214 13 6 394 12 432 1.30e-67 221
MsG0480019046.01.T01 AT3G50280 32.739 449 233 11 1 390 1 439 2.01e-67 220
MsG0480019046.01.T01 AT5G07850 36.404 445 207 14 15 395 22 454 1.14e-66 219
MsG0480019046.01.T01 AT3G50270 34.216 453 223 13 6 394 7 448 6.88e-66 216
MsG0480019046.01.T01 AT5G42830 34.014 441 218 13 15 394 21 449 4.96e-64 212
MsG0480019046.01.T01 AT5G07860 33.769 459 217 14 4 393 8 448 8.28e-62 206
MsG0480019046.01.T01 AT5G38130 33.028 436 217 13 1 375 21 442 1.66e-59 200
MsG0480019046.01.T01 AT5G07870 33.264 478 210 18 4 395 8 462 3.83e-55 189
MsG0480019046.01.T01 AT3G50280 31.661 319 155 7 125 390 1 309 2.80e-41 148
MsG0480019046.01.T01 AT3G50290 34.672 274 119 7 122 343 4 269 1.96e-35 131
MsG0480019046.01.T01 AT2G39980 37.344 241 130 7 16 253 21 243 1.21e-34 134
MsG0480019046.01.T01 AT2G39980 39.474 114 65 3 285 395 369 481 9.92e-19 88.2
MsG0480019046.01.T01 AT5G23940 26.096 456 258 16 4 390 3 448 1.93e-30 122
MsG0480019046.01.T01 AT5G01210 32.000 325 173 11 16 335 19 300 3.23e-29 119
MsG0480019046.01.T01 AT5G01210 38.346 133 77 4 267 396 341 471 5.61e-19 89.0

Find 80 sgRNAs with CRISPR-Local

Find 117 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCCATGGTTTGATGTTTA+TGG 0.113342 4:-13750819 MsG0480019046.01.T01:CDS
TTAGCAAGCCTAACAAAATT+TGG 0.155332 4:+13750876 None:intergenic
ATTTCTTTCAACCAACAAAA+AGG 0.220292 4:-13751858 MsG0480019046.01.T01:CDS
ATAGTTTGATCACTTGATTT+TGG 0.265670 4:+13751911 None:intergenic
TTGTCTTCCACATGAGATTC+TGG 0.280245 4:-13750688 MsG0480019046.01.T01:CDS
AAAACTTTGTTTATCAAATA+GGG 0.285623 4:-13751273 MsG0480019046.01.T01:CDS
GATGTTTATGGTAATGATTT+TGG 0.308658 4:-13750807 MsG0480019046.01.T01:CDS
AGTGGCTCAGCCGTTGGATT+TGG 0.349065 4:+13751804 None:intergenic
GAAACCAACGCTCTAGTGTT+GGG 0.360883 4:+13751390 None:intergenic
AAGTGATCAAACTATTGATT+TGG 0.364536 4:-13751903 MsG0480019046.01.T01:CDS
ATTGGCCGTTGAACACCATT+TGG 0.375515 4:+13751368 None:intergenic
TGGATTTGGTCAGCTTCAAC+TGG 0.382433 4:+13751818 None:intergenic
GTGTTTGCCGGAATAGAAAA+AGG 0.382441 4:-13750729 MsG0480019046.01.T01:CDS
AAACCATGGAGAACTGCTAA+TGG 0.390568 4:+13750830 None:intergenic
TGGTTGAAAGAAATAGAAAC+TGG 0.398490 4:+13751867 None:intergenic
GCCGGCAAGAGGTTGGAAAA+AGG 0.411903 4:+13751763 None:intergenic
GGACTTGTTACAGTGTTTGC+CGG 0.422586 4:-13750741 MsG0480019046.01.T01:CDS
TTTAACCATGTTGTCGTTGA+CGG 0.436978 4:-13751488 MsG0480019046.01.T01:CDS
AACTATTGATTTGGCTCCAT+GGG 0.437482 4:-13751894 MsG0480019046.01.T01:CDS
GACACAACATTCATGAATTG+AGG 0.451357 4:+13750648 None:intergenic
AATGAAAGTTGGGGAGCTGT+TGG 0.454825 4:-13751000 MsG0480019046.01.T01:intron
TTTAACCCACCTTTGGTGCT+CGG 0.457294 4:-13751161 MsG0480019046.01.T01:intron
CGTAGTGGATATAAAGCAAA+TGG 0.458289 4:-13750762 MsG0480019046.01.T01:CDS
CATAAATGTGCTTCATAGGT+TGG 0.459651 4:+13750626 None:intergenic
AATACGATTTCCTTTCACTT+TGG 0.459710 4:-13751348 MsG0480019046.01.T01:CDS
GAGGTACATAGGTAGGTTCT+AGG 0.467173 4:+13751627 None:intergenic
CTGAGCCACTCTCTGTCCTC+TGG 0.472743 4:-13751791 MsG0480019046.01.T01:CDS
TGAAGAATCACTACGAGTCT+TGG 0.477110 4:-13750908 MsG0480019046.01.T01:CDS
TATCCACTACGAACTGCTAC+AGG 0.486958 4:+13750774 None:intergenic
CATGTGGAAGACAAACTTGA+AGG 0.493205 4:+13750697 None:intergenic
AAACTATTGATTTGGCTCCA+TGG 0.495314 4:-13751895 MsG0480019046.01.T01:CDS
TGTGGCATTTCATCAATTCA+CGG 0.502030 4:-13751457 MsG0480019046.01.T01:CDS
GTTGGGGAGCTGTTGGAGGA+AGG 0.504563 4:-13750993 MsG0480019046.01.T01:CDS
AGGCACATCAAAACCATTGT+TGG 0.509192 4:-13751558 MsG0480019046.01.T01:CDS
GGAAACCAACGCTCTAGTGT+TGG 0.511281 4:+13751389 None:intergenic
CTAGAGCGTTGGTTTCCAAA+TGG 0.513520 4:-13751383 MsG0480019046.01.T01:CDS
GAAAGTTGGGGAGCTGTTGG+AGG 0.514885 4:-13750997 MsG0480019046.01.T01:intron
CAACAAAAGAATCACTCTGA+TGG 0.518700 4:-13751323 MsG0480019046.01.T01:CDS
GTGGCATTTCATCAATTCAC+GGG 0.519947 4:-13751456 MsG0480019046.01.T01:CDS
GTGAATTGATGAAATGCCAC+AGG 0.531869 4:+13751459 None:intergenic
ACATGAGATTCTGGAGGCAA+TGG 0.532230 4:-13750679 MsG0480019046.01.T01:CDS
ACAGAGAGTGGCTCAGCCGT+TGG 0.535281 4:+13751798 None:intergenic
TGAGACGGCCGGCAAGAGGT+TGG 0.536408 4:+13751756 None:intergenic
AAAGTGAAAGGAAATCGTAT+TGG 0.539286 4:+13751350 None:intergenic
GAGGAAGGTGGACTTTGTAA+AGG 0.546587 4:-13750978 MsG0480019046.01.T01:CDS
TGCCGGCCGTCTCAAAATAA+CGG 0.548175 4:-13751747 MsG0480019046.01.T01:CDS
GGTTTCCAAATGGTGTTCAA+CGG 0.558301 4:-13751373 MsG0480019046.01.T01:CDS
AACAAAAGAATCACTCTGAT+GGG 0.558688 4:-13751322 MsG0480019046.01.T01:CDS
ATCAACAATTGGAGGTACAT+AGG 0.559262 4:+13751616 None:intergenic
AATAGAAACTGGAGATCCCA+TGG 0.560139 4:+13751878 None:intergenic
CAAGGCCAGAGGACAGAGAG+TGG 0.561146 4:+13751786 None:intergenic
TCTCTCCACCGATACAATCA+AGG 0.566906 4:-13751936 MsG0480019046.01.T01:CDS
ACACAACATTCATGAATTGA+GGG 0.567594 4:+13750649 None:intergenic
AAACCAACGCTCTAGTGTTG+GGG 0.569521 4:+13751391 None:intergenic
GTGATTCTTCAACTTCTCAT+CGG 0.575796 4:+13750920 None:intergenic
AACGCATCACCGAGCACCAA+AGG 0.581768 4:+13751152 None:intergenic
GGGGAGCTGTTGGAGGAAGG+TGG 0.582104 4:-13750990 MsG0480019046.01.T01:CDS
ACAATTGGAGGTACATAGGT+AGG 0.584159 4:+13751620 None:intergenic
CAAGTAACGGAGCTAGTTGA+CGG 0.586570 4:-13751530 MsG0480019046.01.T01:CDS
TTTGGTCAGCTTCAACTGGA+TGG 0.587605 4:+13751822 None:intergenic
TATCCATTAGCAGTTCTCCA+TGG 0.597915 4:-13750833 MsG0480019046.01.T01:CDS
GTTACTTGAACTGCCAACAA+TGG 0.598824 4:+13751545 None:intergenic
TGGTGCCTTGATTGTATCGG+TGG 0.602029 4:+13751931 None:intergenic
AAGTATTCTCAGCTGCAGCA+TGG 0.612633 4:+13751663 None:intergenic
ATTGTTGGCAGTTCAAGTAA+CGG 0.622455 4:-13751543 MsG0480019046.01.T01:CDS
GCATCACCGAGCACCAAAGG+TGG 0.627989 4:+13751155 None:intergenic
ACTTTCCGTCAACGACAACA+TGG 0.629179 4:+13751483 None:intergenic
ATCGGTGGAGAGAACTCGTA+CGG 0.630409 4:+13751946 None:intergenic
AACCAACGCTCTAGTGTTGG+GGG 0.632370 4:+13751392 None:intergenic
TCTTCCACATGAGATTCTGG+AGG 0.645425 4:-13750685 MsG0480019046.01.T01:CDS
GCATATAACAGAACACGAGA+CGG 0.649984 4:+13751709 None:intergenic
TTACCATAAACATCAAACCA+TGG 0.659822 4:+13750816 None:intergenic
TCTGTTATATGCAACAATGC+AGG 0.665996 4:-13751698 MsG0480019046.01.T01:CDS
AAGCCTGTAGCAGTTCGTAG+TGG 0.668630 4:-13750777 MsG0480019046.01.T01:CDS
TTGAAGCTGACCAAATCCAA+CGG 0.669951 4:-13751814 MsG0480019046.01.T01:CDS
CATCACCGAGCACCAAAGGT+GGG 0.670527 4:+13751156 None:intergenic
ATTGCCTCCAGAATCTCATG+TGG 0.679505 4:+13750681 None:intergenic
ACTGAGGTTAGAAGCTACGA+AGG 0.680362 4:-13751578 MsG0480019046.01.T01:CDS
TGAATTGATGAAATGCCACA+GGG 0.686392 4:+13751460 None:intergenic
TCGTTGACGGAAAGTCCCTG+TGG 0.745350 4:-13751475 MsG0480019046.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAACTTTGTTTATCAAAT+AGG - Chr4:13751317-13751336 MsG0480019046.01.T01:CDS 15.0%
!!! AAAACTTTGTTTATCAAATA+GGG - Chr4:13751318-13751337 MsG0480019046.01.T01:CDS 15.0%
!! CAATTATAAGTTGTATTGTA+TGG - Chr4:13751564-13751583 MsG0480019046.01.T01:CDS 20.0%
!! GTATTTAATAGATTCATGAT+AGG - Chr4:13751488-13751507 MsG0480019046.01.T01:CDS 20.0%
!! TTAAAAATCAATGAAGAGAT+TGG - Chr4:13751379-13751398 MsG0480019046.01.T01:CDS 20.0%
!!! TAAGAAATCCAAATTTTGTT+AGG - Chr4:13751707-13751726 MsG0480019046.01.T01:CDS 20.0%
! AAAAATGAATCAACAATTGG+AGG + Chr4:13750986-13751005 None:intergenic 25.0%
! ATTTCTTTCAACCAACAAAA+AGG - Chr4:13750733-13750752 MsG0480019046.01.T01:CDS 25.0%
! CCAAAATAATATTCTGGTAA+TGG + Chr4:13751539-13751558 None:intergenic 25.0%
! CTATTAAATACTTCTTCTTG+CGG + Chr4:13751479-13751498 None:intergenic 25.0%
! GCATTTCCAAAATAATATTC+TGG + Chr4:13751545-13751564 None:intergenic 25.0%
! GTATGGTTAAAATGAAAGTT+GGG - Chr4:13751581-13751600 MsG0480019046.01.T01:CDS 25.0%
! TATGGTTAAAATGAAAGTTG+GGG - Chr4:13751582-13751601 MsG0480019046.01.T01:CDS 25.0%
! TGTATGGTTAAAATGAAAGT+TGG - Chr4:13751580-13751599 MsG0480019046.01.T01:CDS 25.0%
! TTTCTTTCAACCAACAAAAA+GGG - Chr4:13750734-13750753 MsG0480019046.01.T01:CDS 25.0%
!! AAGTGATCAAACTATTGATT+TGG - Chr4:13750688-13750707 MsG0480019046.01.T01:CDS 25.0%
!! ATAGTTTGATCACTTGATTT+TGG + Chr4:13750683-13750702 None:intergenic 25.0%
!! CCATTACCAGAATATTATTT+TGG - Chr4:13751536-13751555 MsG0480019046.01.T01:CDS 25.0%
!! TATACTACCTTTTTCTATTC+CGG + Chr4:13751872-13751891 None:intergenic 25.0%
!!! AAATAATATTCTGGTAATGG+TGG + Chr4:13751536-13751555 None:intergenic 25.0%
!!! GATGTTTATGGTAATGATTT+TGG - Chr4:13751784-13751803 MsG0480019046.01.T01:CDS 25.0%
!!! TTATGGTAATGATTTTGGAT+GGG - Chr4:13751789-13751808 MsG0480019046.01.T01:CDS 25.0%
!!! TTTATGGTAATGATTTTGGA+TGG - Chr4:13751788-13751807 MsG0480019046.01.T01:CDS 25.0%
AAAGTGAAAGGAAATCGTAT+TGG + Chr4:13751244-13751263 None:intergenic 30.0%
AACAAAAGAATCACTCTGAT+GGG - Chr4:13751269-13751288 MsG0480019046.01.T01:CDS 30.0%
AATACGATTTCCTTTCACTT+TGG - Chr4:13751243-13751262 MsG0480019046.01.T01:CDS 30.0%
AATAGATTCATGATAGGAGT+TGG - Chr4:13751494-13751513 MsG0480019046.01.T01:CDS 30.0%
ACACAACATTCATGAATTGA+GGG + Chr4:13751945-13751964 None:intergenic 30.0%
GCGAAAAATGAATCAACAAT+TGG + Chr4:13750989-13751008 None:intergenic 30.0%
TGGTTGAAAGAAATAGAAAC+TGG + Chr4:13750727-13750746 None:intergenic 30.0%
TTACCATAAACATCAAACCA+TGG + Chr4:13751778-13751797 None:intergenic 30.0%
TTAGCAAGCCTAACAAAATT+TGG + Chr4:13751718-13751737 None:intergenic 30.0%
! ATAAAGAAGACCCTTTTTGT+TGG + Chr4:13750747-13750766 None:intergenic 30.0%
!! TATGGTAATGATTTTGGATG+GGG - Chr4:13751790-13751809 MsG0480019046.01.T01:CDS 30.0%
!! TTCATTTTTCGCTTTAACTG+AGG - Chr4:13750997-13751016 MsG0480019046.01.T01:intron 30.0%
ATTGTTGGCAGTTCAAGTAA+CGG - Chr4:13751048-13751067 MsG0480019046.01.T01:intron 35.0%
CAACAAAAGAATCACTCTGA+TGG - Chr4:13751268-13751287 MsG0480019046.01.T01:CDS 35.0%
GACACAACATTCATGAATTG+AGG + Chr4:13751946-13751965 None:intergenic 35.0%
GTGATTCTTCAACTTCTCAT+CGG + Chr4:13751674-13751693 None:intergenic 35.0%
TCTCCATGGTTTGATGTTTA+TGG - Chr4:13751772-13751791 MsG0480019046.01.T01:CDS 35.0%
TCTGTTATATGCAACAATGC+AGG - Chr4:13750893-13750912 MsG0480019046.01.T01:CDS 35.0%
TGAATTGATGAAATGCCACA+GGG + Chr4:13751134-13751153 None:intergenic 35.0%
TGTGGCATTTCATCAATTCA+CGG - Chr4:13751134-13751153 MsG0480019046.01.T01:intron 35.0%
TTCTTGCGGATCAAATTGTT+TGG + Chr4:13751465-13751484 None:intergenic 35.0%
TTTAACCATGTTGTCGTTGA+CGG - Chr4:13751103-13751122 MsG0480019046.01.T01:intron 35.0%
! ATCAACAATTGGAGGTACAT+AGG + Chr4:13750978-13750997 None:intergenic 35.0%
! CTAGTTGACGGTATTTTCAT+TGG - Chr4:13751073-13751092 MsG0480019046.01.T01:intron 35.0%
! TTTTGTTGCTCCAAAGTGAA+AGG + Chr4:13751256-13751275 None:intergenic 35.0%
!! AAACTATTGATTTGGCTCCA+TGG - Chr4:13750696-13750715 MsG0480019046.01.T01:CDS 35.0%
!! AACTATTGATTTGGCTCCAT+GGG - Chr4:13750697-13750716 MsG0480019046.01.T01:CDS 35.0%
!! CGTAGTGGATATAAAGCAAA+TGG - Chr4:13751829-13751848 MsG0480019046.01.T01:CDS 35.0%
!!! TGTGTTCCGTTATTTTGAGA+CGG + Chr4:13750853-13750872 None:intergenic 35.0%
!!! TTTTGGTGCCTTGATTGTAT+CGG + Chr4:13750666-13750685 None:intergenic 35.0%
!!! TTTTGTTAGGCTTGCTAACA+TGG - Chr4:13751720-13751739 MsG0480019046.01.T01:CDS 35.0%
AAACCATGGAGAACTGCTAA+TGG + Chr4:13751764-13751783 None:intergenic 40.0%
AATAGAAACTGGAGATCCCA+TGG + Chr4:13750716-13750735 None:intergenic 40.0%
AGGCACATCAAAACCATTGT+TGG - Chr4:13751033-13751052 MsG0480019046.01.T01:intron 40.0%
CATGTGGAAGACAAACTTGA+AGG + Chr4:13751897-13751916 None:intergenic 40.0%
GCATATAACAGAACACGAGA+CGG + Chr4:13750885-13750904 None:intergenic 40.0%
GGTTTCCAAATGGTGTTCAA+CGG - Chr4:13751218-13751237 MsG0480019046.01.T01:CDS 40.0%
GTGAATTGATGAAATGCCAC+AGG + Chr4:13751135-13751154 None:intergenic 40.0%
GTGGCATTTCATCAATTCAC+GGG - Chr4:13751135-13751154 MsG0480019046.01.T01:intron 40.0%
GTGTTTGCCGGAATAGAAAA+AGG - Chr4:13751862-13751881 MsG0480019046.01.T01:CDS 40.0%
GTTACTTGAACTGCCAACAA+TGG + Chr4:13751049-13751068 None:intergenic 40.0%
TATCCATTAGCAGTTCTCCA+TGG - Chr4:13751758-13751777 MsG0480019046.01.T01:CDS 40.0%
TGAAGAATCACTACGAGTCT+TGG - Chr4:13751683-13751702 MsG0480019046.01.T01:CDS 40.0%
TTGAAGCTGACCAAATCCAA+CGG - Chr4:13750777-13750796 MsG0480019046.01.T01:CDS 40.0%
TTGTCTTCCACATGAGATTC+TGG - Chr4:13751903-13751922 MsG0480019046.01.T01:CDS 40.0%
! AAGCACTTTTAACCCACCTT+TGG - Chr4:13751423-13751442 MsG0480019046.01.T01:CDS 40.0%
! AATGGTGGAACTACTAACCT+TGG + Chr4:13751521-13751540 None:intergenic 40.0%
! ACAATTGGAGGTACATAGGT+AGG + Chr4:13750974-13750993 None:intergenic 40.0%
AAACCAACGCTCTAGTGTTG+GGG + Chr4:13751203-13751222 None:intergenic 45.0%
AAGTATTCTCAGCTGCAGCA+TGG + Chr4:13750931-13750950 None:intergenic 45.0%
AATGAAAGTTGGGGAGCTGT+TGG - Chr4:13751591-13751610 MsG0480019046.01.T01:CDS 45.0%
ACTGAGGTTAGAAGCTACGA+AGG - Chr4:13751013-13751032 MsG0480019046.01.T01:intron 45.0%
ACTTTCCGTCAACGACAACA+TGG + Chr4:13751111-13751130 None:intergenic 45.0%
ATTGCCTCCAGAATCTCATG+TGG + Chr4:13751913-13751932 None:intergenic 45.0%
ATTGGCCGTTGAACACCATT+TGG + Chr4:13751226-13751245 None:intergenic 45.0%
CAAGAGGTTGGAAAAAGGCA+AGG + Chr4:13750826-13750845 None:intergenic 45.0%
GAAACCAACGCTCTAGTGTT+GGG + Chr4:13751204-13751223 None:intergenic 45.0%
GAGGTACATAGGTAGGTTCT+AGG + Chr4:13750967-13750986 None:intergenic 45.0%
TATCCACTACGAACTGCTAC+AGG + Chr4:13751820-13751839 None:intergenic 45.0%
TCATGATAGGAGTTGGACCA+AGG - Chr4:13751501-13751520 MsG0480019046.01.T01:CDS 45.0%
TCTCTCCACCGATACAATCA+AGG - Chr4:13750655-13750674 MsG0480019046.01.T01:CDS 45.0%
TCTTCCACATGAGATTCTGG+AGG - Chr4:13751906-13751925 MsG0480019046.01.T01:CDS 45.0%
TTTGGTCAGCTTCAACTGGA+TGG + Chr4:13750772-13750791 None:intergenic 45.0%
! ACATGAGATTCTGGAGGCAA+TGG - Chr4:13751912-13751931 MsG0480019046.01.T01:CDS 45.0%
! CAAGTAACGGAGCTAGTTGA+CGG - Chr4:13751061-13751080 MsG0480019046.01.T01:intron 45.0%
! GAGGAAGGTGGACTTTGTAA+AGG - Chr4:13751613-13751632 MsG0480019046.01.T01:CDS 45.0%
! TGGATTTGGTCAGCTTCAAC+TGG + Chr4:13750776-13750795 None:intergenic 45.0%
!! CTAGAGCGTTGGTTTCCAAA+TGG - Chr4:13751208-13751227 MsG0480019046.01.T01:CDS 45.0%
!! GGACTTGTTACAGTGTTTGC+CGG - Chr4:13751850-13751869 MsG0480019046.01.T01:CDS 45.0%
!! TTTAACCCACCTTTGGTGCT+CGG - Chr4:13751430-13751449 MsG0480019046.01.T01:CDS 45.0%
!!! TTCCGTTATTTTGAGACGGC+CGG + Chr4:13750849-13750868 None:intergenic 45.0%
AAGCCTGTAGCAGTTCGTAG+TGG - Chr4:13751814-13751833 MsG0480019046.01.T01:CDS 50.0%
ATCGGTGGAGAGAACTCGTA+CGG + Chr4:13750648-13750667 None:intergenic 50.0%
GGAAACCAACGCTCTAGTGT+TGG + Chr4:13751205-13751224 None:intergenic 50.0%
TGCCGGCCGTCTCAAAATAA+CGG - Chr4:13750844-13750863 MsG0480019046.01.T01:CDS 50.0%
TGGTGCCTTGATTGTATCGG+TGG + Chr4:13750663-13750682 None:intergenic 50.0%
TTGGAAAAAGGCAAGGCCAG+AGG + Chr4:13750819-13750838 None:intergenic 50.0%
! AACCAACGCTCTAGTGTTGG+GGG + Chr4:13751202-13751221 None:intergenic 50.0%
! GCCTTTTTCCAACCTCTTGC+CGG - Chr4:13750827-13750846 MsG0480019046.01.T01:CDS 50.0%
AACCCCCAACACTAGAGCGT+TGG - Chr4:13751197-13751216 MsG0480019046.01.T01:CDS 55.0%
AACGCATCACCGAGCACCAA+AGG + Chr4:13751442-13751461 None:intergenic 55.0%
AGTGGCTCAGCCGTTGGATT+TGG + Chr4:13750790-13750809 None:intergenic 55.0%
CATCACCGAGCACCAAAGGT+GGG + Chr4:13751438-13751457 None:intergenic 55.0%
GAAAGTTGGGGAGCTGTTGG+AGG - Chr4:13751594-13751613 MsG0480019046.01.T01:CDS 55.0%
GCCGGCAAGAGGTTGGAAAA+AGG + Chr4:13750831-13750850 None:intergenic 55.0%
TCGTTGACGGAAAGTCCCTG+TGG - Chr4:13751116-13751135 MsG0480019046.01.T01:intron 55.0%
!!! ATTTTGAGACGGCCGGCAAG+AGG + Chr4:13750842-13750861 None:intergenic 55.0%
ACAGAGAGTGGCTCAGCCGT+TGG + Chr4:13750796-13750815 None:intergenic 60.0%
CAAGGCCAGAGGACAGAGAG+TGG + Chr4:13750808-13750827 None:intergenic 60.0%
CTGAGCCACTCTCTGTCCTC+TGG - Chr4:13750800-13750819 MsG0480019046.01.T01:CDS 60.0%
GCATCACCGAGCACCAAAGG+TGG + Chr4:13751439-13751458 None:intergenic 60.0%
GTTGGGGAGCTGTTGGAGGA+AGG - Chr4:13751598-13751617 MsG0480019046.01.T01:CDS 60.0%
GGGGAGCTGTTGGAGGAAGG+TGG - Chr4:13751601-13751620 MsG0480019046.01.T01:CDS 65.0%
TGAGACGGCCGGCAAGAGGT+TGG + Chr4:13750838-13750857 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 13750638 13751975 13750638 ID=MsG0480019046.01;Name=MsG0480019046.01
Chr4 mRNA 13750638 13751975 13750638 ID=MsG0480019046.01.T01;Parent=MsG0480019046.01;Name=MsG0480019046.01.T01;_AED=0.29;_eAED=0.29;_QI=0|0|0|1|1|1|2|0|396
Chr4 exon 13751162 13751975 13751162 ID=MsG0480019046.01.T01:exon:8559;Parent=MsG0480019046.01.T01
Chr4 exon 13750638 13751014 13750638 ID=MsG0480019046.01.T01:exon:8558;Parent=MsG0480019046.01.T01
Chr4 CDS 13751162 13751975 13751162 ID=MsG0480019046.01.T01:cds;Parent=MsG0480019046.01.T01
Chr4 CDS 13750638 13751014 13750638 ID=MsG0480019046.01.T01:cds;Parent=MsG0480019046.01.T01
Gene Sequence

>MsG0480019046.01.T01

ATGGGAACCGTACGAGTTCTCTCCACCGATACAATCAAGGCACCAAAATCAAGTGATCAAACTATTGATTTGGCTCCATGGGATCTCCAGTTTCTATTTCTTTCAACCAACAAAAAGGGTCTTCTTTATCACCATCCAGTTGAAGCTGACCAAATCCAACGGCTGAGCCACTCTCTGTCCTCTGGCCTTGCCTTTTTCCAACCTCTTGCCGGCCGTCTCAAAATAACGGAACACAATGACAACACCGTCTCGTGTTCTGTTATATGCAACAATGCAGGTGTTCTCTTTATCCATGCTGCAGCTGAGAATACTTGTGTTGCTGACATCCTAGAACCTACCTATGTACCTCCAATTGTTGATTCATTTTTCGCTTTAACTGAGGTTAGAAGCTACGAAGGCACATCAAAACCATTGTTGGCAGTTCAAGTAACGGAGCTAGTTGACGGTATTTTCATTGGTTGTTCATTTAACCATGTTGTCGTTGACGGAAAGTCCCTGTGGCATTTCATCAATTCACGGGCTGAAATATCACGTAGTTGTTGTCATCATCAAATATCTAAACCCCCAACACTAGAGCGTTGGTTTCCAAATGGTGTTCAACGGCCAATACGATTTCCTTTCACTTTGGAGCAACAAAAGAATCACTCTGATGGGTTGAGTTTTTCGTCGTTTAATGATGAAAAACTTTGTTTATCAAATAGGGTATTTCATTTCACAAAAGAGAAAATTGTACAGCTGAAATTAAAAATCAATGAAGAGATTGGTGTCATCAATATCTTCTCTACAAGCACTTTTAACCCACCTTTGGTGCTCGTTGGGGAGCTGTTGGAGGAAGGTGGACTTTGTAAAGGTGCTTGCGAGATGAACAAGTTAATTGCTTCACACACCGATGAGAAGTTGAAGAATCACTACGAGTCTTGGTTAAGAAATCCAAATTTTGTTAGGCTTGCTAACATGGTAAAAAATAATTTCATATCCATTAGCAGTTCTCCATGGTTTGATGTTTATGGTAATGATTTTGGATGGGGAAAGCCTGTAGCAGTTCGTAGTGGATATAAAGCAAATGGACTTGTTACAGTGTTTGCCGGAATAGAAAAAGGTAGTATAGACCTTCAAGTTTGTCTTCCACATGAGATTCTGGAGGCAATGGAAAATGACCCTCAATTCATGAATGTTGTGTCCAACCTATGA

Protein sequence

>MsG0480019046.01.T01

MGTVRVLSTDTIKAPKSSDQTIDLAPWDLQFLFLSTNKKGLLYHHPVEADQIQRLSHSLSSGLAFFQPLAGRLKITEHNDNTVSCSVICNNAGVLFIHAAAENTCVADILEPTYVPPIVDSFFALTEVRSYEGTSKPLLAVQVTELVDGIFIGCSFNHVVVDGKSLWHFINSRAEISRSCCHHQISKPPTLERWFPNGVQRPIRFPFTLEQQKNHSDGLSFSSFNDEKLCLSNRVFHFTKEKIVQLKLKINEEIGVINIFSTSTFNPPLVLVGELLEEGGLCKGACEMNKLIASHTDEKLKNHYESWLRNPNFVRLANMVKNNFISISSSPWFDVYGNDFGWGKPVAVRSGYKANGLVTVFAGIEKGSIDLQVCLPHEILEAMENDPQFMNVVSNL*