AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880044325.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880044325.01.T01 MTR_0190s0020 93.948 347 21 0 1 347 97 443 0.0 682
MsG0880044325.01.T01 MTR_8g041770 71.304 345 98 1 2 346 98 441 2.79e-179 504
MsG0880044325.01.T01 MTR_4g022800 60.784 357 127 4 1 346 88 442 4.71e-156 445
MsG0880044325.01.T01 MTR_4g094832 61.960 347 123 4 1 342 84 426 4.90e-156 445
MsG0880044325.01.T01 MTR_4g022670 60.393 356 129 4 1 346 88 441 6.06e-154 440
MsG0880044325.01.T01 MTR_3g088420 61.671 347 129 3 2 346 89 433 5.05e-153 437
MsG0880044325.01.T01 MTR_4g022720 60.571 350 132 4 1 346 88 435 5.23e-152 435
MsG0880044325.01.T01 MTR_7g026860 59.664 357 127 5 1 346 88 438 1.01e-151 434
MsG0880044325.01.T01 MTR_4g022825 58.989 356 131 5 2 346 89 440 1.48e-151 434
MsG0880044325.01.T01 MTR_3g026310 58.564 362 131 4 2 346 89 448 2.05e-150 431
MsG0880044325.01.T01 MTR_4g094835 60.231 347 129 4 1 342 100 442 4.39e-150 430
MsG0880044325.01.T01 MTR_4g094842 56.522 345 149 1 1 344 102 446 8.01e-142 409
MsG0880044325.01.T01 MTR_4g094838 55.620 347 129 4 1 342 102 428 2.83e-134 389
MsG0880044325.01.T01 MTR_4g094828 50.278 360 163 7 1 346 93 450 1.34e-122 360
MsG0880044325.01.T01 MTR_8g079710 51.724 348 153 7 1 337 93 436 4.38e-121 356
MsG0880044325.01.T01 MTR_4g022760 51.549 355 118 4 1 346 88 397 5.25e-121 354
MsG0880044325.01.T01 MTR_4g022290 50.281 356 157 7 1 343 94 442 3.09e-116 344
MsG0880044325.01.T01 MTR_6g016815 45.115 348 119 7 2 346 103 381 7.09e-91 277
MsG0880044325.01.T01 MTR_8g040780 58.986 217 86 2 128 341 11 227 7.58e-89 267
MsG0880044325.01.T01 MTR_3g101900 42.120 349 193 6 3 346 104 448 1.24e-85 266
MsG0880044325.01.T01 MTR_3g101930 41.880 351 192 6 3 345 108 454 1.42e-84 263
MsG0880044325.01.T01 MTR_3g102010 40.960 354 195 6 3 346 102 451 6.73e-79 249
MsG0880044325.01.T01 MTR_3g102020 40.286 350 199 6 3 346 106 451 4.60e-78 246
MsG0880044325.01.T01 MTR_3g101960 39.710 345 198 6 3 341 105 445 3.84e-76 241
MsG0880044325.01.T01 MTR_3g101970 39.420 345 193 6 3 345 106 436 1.17e-75 240
MsG0880044325.01.T01 MTR_3g070170 31.443 388 210 5 2 346 96 470 9.54e-63 207
MsG0880044325.01.T01 MTR_4g015180 34.729 406 196 10 2 346 90 487 2.14e-62 207
MsG0880044325.01.T01 MTR_5g081960 32.658 395 209 11 2 342 91 482 4.15e-56 190
MsG0880044325.01.T01 MTR_7g026770 50.262 191 72 3 54 242 132 301 2.68e-55 183
MsG0880044325.01.T01 MTR_4g094825 52.980 151 59 2 197 346 252 391 1.96e-47 165
MsG0880044325.01.T01 MTR_4g094825 52.991 117 52 1 1 114 160 276 3.27e-34 130
MsG0880044325.01.T01 MTR_3g102030 33.993 303 165 7 3 300 48 320 2.13e-47 163
MsG0880044325.01.T01 MTR_6g034485 54.762 126 56 1 99 224 1 125 2.54e-47 156
MsG0880044325.01.T01 MTR_6g045553 30.659 349 202 6 31 342 126 471 4.14e-47 166
MsG0880044325.01.T01 MTR_6g034495 77.320 97 20 1 2 96 71 167 9.98e-47 156
MsG0880044325.01.T01 MTR_8g040760 64.407 118 41 1 2 118 95 212 1.69e-43 150
MsG0880044325.01.T01 MTR_7g026850 68.817 93 29 0 1 93 71 163 4.23e-41 142
MsG0880044325.01.T01 MTR_8g075610 27.143 350 222 13 2 333 77 411 2.35e-29 117
MsG0880044325.01.T01 MTR_2g064495 26.571 350 227 11 2 333 86 423 3.45e-29 117
MsG0880044325.01.T01 MTR_2g105330 26.571 350 227 11 2 333 86 423 6.53e-29 116
MsG0880044325.01.T01 MTR_7g026830 64.103 78 28 0 1 78 20 97 1.30e-28 107
MsG0880044325.01.T01 MTR_4g007540 25.284 352 230 12 2 333 86 424 1.93e-28 114
MsG0880044325.01.T01 MTR_3g098980 29.532 342 214 13 5 333 99 426 2.02e-28 114
MsG0880044325.01.T01 MTR_3g026950 29.688 320 176 12 50 331 129 437 2.83e-28 114
MsG0880044325.01.T01 MTR_3g049150 29.245 318 181 10 50 333 130 437 1.74e-26 109
MsG0880044325.01.T01 MTR_7g026780 48.214 112 33 2 235 346 25 111 1.11e-24 97.1
MsG0880044325.01.T01 MTR_8g096530 27.907 344 224 11 2 333 89 420 1.67e-24 103
MsG0880044325.01.T01 MTR_7g084940 29.126 309 188 11 2 295 100 392 2.41e-21 94.7
MsG0880044325.01.T01 MTR_7g026870 68.519 54 17 0 202 255 98 151 5.53e-21 88.6
MsG0880044325.01.T01 MTR_4g097090 27.303 304 191 12 50 327 141 440 1.33e-20 92.8
MsG0880044325.01.T01 MTR_7g027175 26.513 347 225 10 2 333 98 429 3.40e-20 91.7
MsG0880044325.01.T01 MTR_4g127650 24.501 351 234 12 2 327 96 440 1.52e-19 89.7
MsG0880044325.01.T01 MTR_1g040195 27.978 361 205 17 2 333 71 405 4.51e-19 88.2
MsG0880044325.01.T01 MTR_4g013050 24.789 355 215 10 2 337 83 404 5.24e-19 87.8
MsG0880044325.01.T01 MTR_7g014250 29.021 286 154 12 51 299 140 413 1.69e-18 86.7
MsG0880044325.01.T01 MTR_3g049140 29.167 240 131 10 116 331 6 230 2.60e-18 83.6
MsG0880044325.01.T01 MTR_6g015315 26.498 317 191 10 51 336 140 445 3.00e-18 85.9
MsG0880044325.01.T01 MTR_6g015320 27.742 310 189 11 51 333 143 444 1.28e-17 84.0
MsG0880044325.01.T01 MTR_1g040175 26.197 355 225 17 2 335 94 432 1.51e-17 84.0
MsG0880044325.01.T01 MTR_2g015430 27.715 267 175 7 42 298 128 386 5.78e-17 82.0
MsG0880044325.01.T01 MTR_7g086000 25.824 364 218 14 2 327 92 441 1.30e-16 80.9
MsG0880044325.01.T01 MTR_2g089755 27.698 278 167 10 50 299 162 433 1.84e-16 80.5
MsG0880044325.01.T01 MTR_3g087640 28.221 326 195 14 38 333 146 462 3.03e-16 80.1
MsG0880044325.01.T01 MTR_7g014230 29.102 323 166 16 43 319 134 439 8.28e-16 78.6
MsG0880044325.01.T01 MTR_6g015850 26.299 308 197 10 51 334 147 448 2.38e-15 77.0
MsG0880044325.01.T01 MTR_2g089765 25.625 320 188 9 50 330 159 467 1.07e-14 75.5
MsG0880044325.01.T01 MTR_7g014360 29.104 268 157 11 51 299 90 343 2.41e-14 73.9
MsG0880044325.01.T01 MTR_1g081660 25.309 324 197 14 2 305 104 402 3.33e-14 73.6
MsG0880044325.01.T01 MTR_7g015860 25.347 288 164 10 45 296 141 413 3.37e-14 73.6
MsG0880044325.01.T01 MTR_7g026880 59.259 54 20 1 293 346 2 53 4.09e-14 66.6
MsG0880044325.01.T01 MTR_1g040215 25.000 320 189 12 2 296 94 387 8.40e-14 72.4
MsG0880044325.01.T01 MTR_4g055170 28.378 222 142 5 45 255 140 355 1.10e-13 72.0
MsG0880044325.01.T01 MTR_3g086020 24.857 350 237 10 2 346 87 415 2.09e-13 71.2
MsG0880044325.01.T01 MTR_3g465980 26.943 193 130 3 45 228 141 331 3.95e-13 70.5
MsG0880044325.01.T01 MTR_7g085930 26.667 270 173 8 2 249 89 355 1.11e-12 68.9
MsG0880044325.01.T01 MTR_7g056087 23.457 243 168 6 2 228 90 330 1.74e-12 68.6
MsG0880044325.01.T01 MTR_3g465990 27.273 198 131 5 41 228 137 331 3.31e-12 67.8
MsG0880044325.01.T01 MTR_3g112180 25.478 314 192 11 2 294 96 388 4.06e-12 67.4
MsG0880044325.01.T01 MTR_5g026320 24.865 370 234 14 1 346 104 453 5.87e-12 67.0
MsG0880044325.01.T01 MTR_2g089670 23.551 276 169 7 50 295 166 429 2.36e-11 65.1
MsG0880044325.01.T01 MTR_7g084910 27.803 223 144 7 2 212 101 318 2.40e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880044325.01.T01 AT5G67150 40.571 350 196 6 2 342 96 442 8.06e-85 264
MsG0880044325.01.T01 AT3G50280 38.109 349 207 6 2 343 94 440 1.35e-80 253
MsG0880044325.01.T01 AT3G50300 40.336 357 196 9 2 345 94 446 3.85e-80 251
MsG0880044325.01.T01 AT5G67160 40.286 350 197 7 2 346 90 432 8.91e-78 245
MsG0880044325.01.T01 AT5G07860 40.227 353 191 7 2 345 107 448 2.90e-75 239
MsG0880044325.01.T01 AT3G50270 37.110 353 213 6 2 346 97 448 6.02e-75 238
MsG0880044325.01.T01 AT5G01210 36.198 384 202 6 1 346 91 469 4.57e-74 237
MsG0880044325.01.T01 AT5G42830 39.496 357 198 8 2 346 99 449 2.85e-73 234
MsG0880044325.01.T01 AT3G50280 38.462 312 184 5 38 343 1 310 6.44e-72 226
MsG0880044325.01.T01 AT5G07850 40.056 357 194 9 2 346 105 453 3.21e-69 224
MsG0880044325.01.T01 AT5G07870 37.741 363 200 7 2 346 107 461 7.22e-68 220
MsG0880044325.01.T01 AT2G39980 34.596 396 201 8 2 346 92 480 1.58e-65 215
MsG0880044325.01.T01 AT5G38130 37.982 337 190 9 2 327 114 442 7.80e-64 210
MsG0880044325.01.T01 AT5G23940 35.443 316 189 6 39 342 136 448 1.00e-57 194
MsG0880044325.01.T01 AT3G50290 41.948 267 146 5 35 293 4 269 2.52e-55 182
MsG0880044325.01.T01 AT5G48930 26.705 352 225 11 2 333 86 424 4.67e-27 111
MsG0880044325.01.T01 AT3G48720 25.513 341 238 8 2 334 91 423 1.75e-24 103
MsG0880044325.01.T01 AT2G19070 27.322 366 222 14 2 334 88 442 7.05e-23 99.4
MsG0880044325.01.T01 AT2G40230 28.846 312 198 11 2 300 91 391 7.41e-22 96.3
MsG0880044325.01.T01 AT5G41040 26.496 351 222 12 2 333 99 432 8.78e-22 96.3
MsG0880044325.01.T01 AT5G41040 26.496 351 222 12 2 333 115 448 1.11e-21 95.9
MsG0880044325.01.T01 AT1G28680 28.897 263 170 8 45 298 135 389 2.08e-21 95.1
MsG0880044325.01.T01 AT1G28680 31.937 191 120 5 45 228 135 322 9.09e-21 92.8
MsG0880044325.01.T01 AT5G63560 24.854 342 223 11 2 328 91 413 1.44e-19 89.7
MsG0880044325.01.T01 AT3G29590 25.484 310 206 9 48 337 138 442 1.37e-18 87.0
MsG0880044325.01.T01 AT3G29635 26.710 307 197 12 48 331 142 443 2.78e-17 83.2
MsG0880044325.01.T01 AT5G61160 25.240 313 194 11 48 333 139 438 8.86e-17 81.6
MsG0880044325.01.T01 AT1G24420 26.923 312 205 12 2 304 90 387 5.29e-16 79.0
MsG0880044325.01.T01 AT1G24420 26.923 312 205 12 2 304 90 387 5.29e-16 79.0
MsG0880044325.01.T01 AT5G39090 27.541 305 177 13 48 325 140 427 6.69e-16 79.0
MsG0880044325.01.T01 AT5G07080 26.289 194 113 4 52 226 149 331 8.69e-15 75.5
MsG0880044325.01.T01 AT3G03480 26.727 333 203 14 2 316 103 412 2.10e-14 74.3
MsG0880044325.01.T01 AT1G03390 26.857 350 215 16 5 328 110 444 2.78e-14 73.9
MsG0880044325.01.T01 AT5G57840 26.316 361 207 17 2 327 86 422 1.11e-13 72.0
MsG0880044325.01.T01 AT1G65450 25.625 320 190 13 2 295 103 400 4.71e-13 70.1
MsG0880044325.01.T01 AT5G39050 25.168 298 179 12 62 325 160 447 4.96e-13 70.1
MsG0880044325.01.T01 AT3G47170 25.128 195 123 6 52 226 153 344 9.17e-13 69.3
MsG0880044325.01.T01 AT1G32910 25.767 326 192 13 1 296 94 399 1.99e-12 68.6
MsG0880044325.01.T01 AT2G25150 24.823 282 176 12 52 312 148 414 8.11e-12 66.6
MsG0880044325.01.T01 AT1G78990 25.697 323 191 14 1 296 96 396 8.86e-12 66.2
MsG0880044325.01.T01 AT2G23510 24.138 261 173 8 53 298 150 400 1.28e-11 65.9

Find 71 sgRNAs with CRISPR-Local

Find 94 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCCTTGGTTTGATGTTTA+TGG 0.170784 8:-39987591 MsG0880044325.01.T01:CDS
TGGAAATGATCCCGAGTTTA+TGG 0.213870 8:-39987424 MsG0880044325.01.T01:CDS
CCGTTGCCTGAGGATTATTT+TGG 0.234642 8:-39987819 MsG0880044325.01.T01:CDS
GCGAAATTCGTGCTGGATAT+TGG 0.263514 8:-39987864 MsG0880044325.01.T01:CDS
GAGAGTATTTCATTTCAAAA+AGG 0.290139 8:-39988018 MsG0880044325.01.T01:CDS
ATGTCTTCCTTGTGAAGTTT+TGG 0.303708 8:-39987454 MsG0880044325.01.T01:CDS
GATGTTTATGGTAATGATTT+TGG 0.307637 8:-39987579 MsG0880044325.01.T01:CDS
ACGATCAAATGTTGGAAGTT+TGG 0.316033 8:+39988139 None:intergenic
AAAATTCAAAGCAAACTTAG+AGG 0.330646 8:-39987979 MsG0880044325.01.T01:CDS
TGGGCTTGGTAAGGGCTCTT+TGG 0.337089 8:-39987739 MsG0880044325.01.T01:CDS
TATTGTGAAAGGAAATCTAA+TGG 0.359609 8:+39988091 None:intergenic
TTGAAATGAAATACTCTCTC+TGG 0.360829 8:+39988023 None:intergenic
GTTAACCACGTGATTGTTGA+TGG 0.384791 8:-39988224 MsG0880044325.01.T01:CDS
CGAATTTCGCTTCTGCTTGT+GGG 0.396357 8:+39987877 None:intergenic
GGATTACAACCCACATTAGT+AGG 0.397014 8:+39987392 None:intergenic
ACGAATTTCGCTTCTGCTTG+TGG 0.401202 8:+39987876 None:intergenic
CATTAAAGCCGGTGACTTGT+TGG 0.413794 8:-39987769 MsG0880044325.01.T01:CDS
TTGTTGATGGTACGTCGTTT+TGG 0.426327 8:-39988211 MsG0880044325.01.T01:CDS
GGAAGACGGTGGGCTTGGTA+AGG 0.427310 8:-39987748 MsG0880044325.01.T01:CDS
CCATCATGTGCAACAACAAA+GGG 0.428645 8:-39988433 None:intergenic
ATTGTGAAAGGAAATCTAAT+GGG 0.441170 8:+39988092 None:intergenic
TTAGTCGACGGCATCTTCAT+TGG 0.444242 8:-39988254 MsG0880044325.01.T01:CDS
TTTGGCATTTCATCAATTCA+TGG 0.452731 8:-39988193 MsG0880044325.01.T01:CDS
CACAAGGAAGACATACTTCA+AGG 0.464894 8:+39987463 None:intergenic
CAACTTCTCATCTGTGTGCA+AGG 0.466084 8:+39987698 None:intergenic
AACAGTGATTCATTGGTGAT+TGG 0.474184 8:-39987618 MsG0880044325.01.T01:CDS
AACTTCCAACATTTGATCGT+TGG 0.480962 8:-39988136 MsG0880044325.01.T01:CDS
TGGTGATTGGTGGTTCTCCT+TGG 0.487443 8:-39987605 MsG0880044325.01.T01:CDS
TTGGCATTTCATCAATTCAT+GGG 0.489109 8:-39988192 MsG0880044325.01.T01:CDS
AATGAGGATAATTATGAAGA+AGG 0.489922 8:-39988059 MsG0880044325.01.T01:CDS
TGAATAGGAGGATGATAAGT+GGG 0.498813 8:+39988356 None:intergenic
CACAATAGAGTCACGAAATG+AGG 0.502975 8:-39988075 MsG0880044325.01.T01:CDS
GTGAATAGGAGGATGATAAG+TGG 0.505672 8:+39988355 None:intergenic
CGTCGACTAACTCTGTTACT+TGG 0.506191 8:+39988267 None:intergenic
TTCAAAGCAAACTTAGAGGT+TGG 0.511060 8:-39987975 MsG0880044325.01.T01:CDS
TTGTTGGAAGACGGTGGGCT+TGG 0.520935 8:-39987753 MsG0880044325.01.T01:CDS
AGTGATTCATTGGTGATTGG+TGG 0.529204 8:-39987615 MsG0880044325.01.T01:CDS
TTTCGTGACTCTATTGTGAA+AGG 0.529927 8:+39988080 None:intergenic
TATGGCCAACAGTGATTCAT+TGG 0.530783 8:-39987625 MsG0880044325.01.T01:CDS
ATGAGCGAAAATTGCTTGCA+AGG 0.532407 8:+39987935 None:intergenic
GAAAACCAACGATCAAATGT+TGG 0.535798 8:+39988131 None:intergenic
GAAGACGGTGGGCTTGGTAA+GGG 0.539527 8:-39987747 MsG0880044325.01.T01:CDS
GTGACTTGTTGGAAGACGGT+GGG 0.548009 8:-39987758 MsG0880044325.01.T01:CDS
ACCGTCTTCCAACAAGTCAC+CGG 0.551339 8:+39987761 None:intergenic
AGCAGAAGCGAAATTCGTGC+TGG 0.555369 8:-39987871 MsG0880044325.01.T01:CDS
GGAAAGATTTATGTGTATGC+GGG 0.563929 8:-39987507 MsG0880044325.01.T01:CDS
ATACCAGAGGTGACAAAACT+CGG 0.565166 8:+39987645 None:intergenic
GCATTACCAAAATAATCCTC+AGG 0.566644 8:+39987813 None:intergenic
TGTGTTGTTAGCATTAAAGC+CGG 0.567065 8:-39987780 MsG0880044325.01.T01:CDS
TCCATCATGTGCAACAACAA+AGG 0.573572 8:-39988434 None:intergenic
CCAAAATAATCCTCAGGCAA+CGG 0.577247 8:+39987819 None:intergenic
GTGTATGCGGGTGTAGAAGA+TGG 0.583389 8:-39987495 MsG0880044325.01.T01:CDS
GGCAACGGAGGAATCAACCT+TGG 0.584288 8:+39987834 None:intergenic
ATAAGTGGGTTTAACGATGT+CGG 0.584805 8:+39988370 None:intergenic
GCCGGTGACTTGTTGGAAGA+CGG 0.588361 8:-39987762 MsG0880044325.01.T01:CDS
GTTGATTCCTCCGTTGCCTG+AGG 0.590687 8:-39987829 MsG0880044325.01.T01:CDS
GGTGACTTGTTGGAAGACGG+TGG 0.597827 8:-39987759 MsG0880044325.01.T01:CDS
GGACACAACATCCATAAACT+CGG 0.608508 8:+39987413 None:intergenic
GTTACTTGGACTGCAAGTAA+CGG 0.617187 8:+39988281 None:intergenic
AATCACCAATGAATCACTGT+TGG 0.617756 8:+39987620 None:intergenic
TGGAAAGATTTATGTGTATG+CGG 0.617965 8:-39987508 MsG0880044325.01.T01:CDS
TCATGGGCTGAAATCTCGAA+AGG 0.621563 8:-39988176 MsG0880044325.01.T01:CDS
GACACAACATCCATAAACTC+GGG 0.639899 8:+39987414 None:intergenic
AAATAATCCTCAGGCAACGG+AGG 0.648191 8:+39987822 None:intergenic
ATCACTGTTGGCCATACCAG+AGG 0.652147 8:+39987632 None:intergenic
CAAGTAACAGAGTTAGTCGA+CGG 0.663446 8:-39988266 MsG0880044325.01.T01:CDS
ATTGCCTCCAAAACTTCACA+AGG 0.673346 8:+39987447 None:intergenic
TTACCATAAACATCAAACCA+AGG 0.678732 8:+39987588 None:intergenic
TGGATATTGGAATTAGACCA+AGG 0.680206 8:-39987851 MsG0880044325.01.T01:CDS
CATCATGTGCAACAACAAAG+GGG 0.717111 8:-39988432 None:intergenic
ACGTACCATCAACAATCACG+TGG 0.741961 8:+39988219 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAAAAATCAATATGAAAAT+TGG - Chr8:39988158-39988177 MsG0880044325.01.T01:CDS 15.0%
! AAAATTCAAAGCAAACTTAG+AGG - Chr8:39987856-39987875 MsG0880044325.01.T01:CDS 25.0%
! AATGAGGATAATTATGAAGA+AGG - Chr8:39987776-39987795 MsG0880044325.01.T01:CDS 25.0%
! AATGGAGTTAAAAACTATGA+AGG - Chr8:39987521-39987540 MsG0880044325.01.T01:CDS 25.0%
! ATTGTGAAAGGAAATCTAAT+GGG + Chr8:39987746-39987765 None:intergenic 25.0%
! TATTGTGAAAGGAAATCTAA+TGG + Chr8:39987747-39987766 None:intergenic 25.0%
!!! AACACTAATGTTTTTTGCTA+CGG + Chr8:39987444-39987463 None:intergenic 25.0%
!!! GAGAGTATTTCATTTCAAAA+AGG - Chr8:39987817-39987836 MsG0880044325.01.T01:CDS 25.0%
!!! GATGTTTATGGTAATGATTT+TGG - Chr8:39988256-39988275 MsG0880044325.01.T01:CDS 25.0%
!!! TTATGGTAATGATTTTGGTT+GGG - Chr8:39988261-39988280 MsG0880044325.01.T01:CDS 25.0%
!!! TTTATGGTAATGATTTTGGT+TGG - Chr8:39988260-39988279 MsG0880044325.01.T01:CDS 25.0%
TGGAAAGATTTATGTGTATG+CGG - Chr8:39988327-39988346 MsG0880044325.01.T01:CDS 30.0%
TTACCATAAACATCAAACCA+AGG + Chr8:39988250-39988269 None:intergenic 30.0%
TTGAAATGAAATACTCTCTC+TGG + Chr8:39987815-39987834 None:intergenic 30.0%
TTGGCATTTCATCAATTCAT+GGG - Chr8:39987643-39987662 MsG0880044325.01.T01:CDS 30.0%
TTTGGCATTTCATCAATTCA+TGG - Chr8:39987642-39987661 MsG0880044325.01.T01:CDS 30.0%
! AAGCAATTTTCGCTCATATT+TGG - Chr8:39987906-39987925 MsG0880044325.01.T01:CDS 30.0%
! CATTTAGAGCAAAAAATGAG+TGG + Chr8:39987505-39987524 None:intergenic 30.0%
!!! CACTCATTTTTTGCTCTAAA+TGG - Chr8:39987503-39987522 MsG0880044325.01.T01:CDS 30.0%
!!! TATGGTAATGATTTTGGTTG+GGG - Chr8:39988262-39988281 MsG0880044325.01.T01:CDS 30.0%
!!! TTTGATCGTTGGTTTTCAAA+AGG - Chr8:39987710-39987729 MsG0880044325.01.T01:CDS 30.0%
AAAAATGAGTGGTGAATAGG+AGG + Chr8:39987494-39987513 None:intergenic 35.0%
AACTTCCAACATTTGATCGT+TGG - Chr8:39987699-39987718 MsG0880044325.01.T01:CDS 35.0%
AATCACCAATGAATCACTGT+TGG + Chr8:39988218-39988237 None:intergenic 35.0%
ACGATCAAATGTTGGAAGTT+TGG + Chr8:39987699-39987718 None:intergenic 35.0%
GAAAACCAACGATCAAATGT+TGG + Chr8:39987707-39987726 None:intergenic 35.0%
GCAAAAAATGAGTGGTGAAT+AGG + Chr8:39987497-39987516 None:intergenic 35.0%
GCATTACCAAAATAATCCTC+AGG + Chr8:39988025-39988044 None:intergenic 35.0%
GGAAAGATTTATGTGTATGC+GGG - Chr8:39988328-39988347 MsG0880044325.01.T01:CDS 35.0%
TGAATAGGAGGATGATAAGT+GGG + Chr8:39987482-39987501 None:intergenic 35.0%
TGGATATTGGAATTAGACCA+AGG - Chr8:39987984-39988003 MsG0880044325.01.T01:CDS 35.0%
TTCAAAGCAAACTTAGAGGT+TGG - Chr8:39987860-39987879 MsG0880044325.01.T01:CDS 35.0%
TTTCGTGACTCTATTGTGAA+AGG + Chr8:39987758-39987777 None:intergenic 35.0%
! AACAGTGATTCATTGGTGAT+TGG - Chr8:39988217-39988236 MsG0880044325.01.T01:CDS 35.0%
! ATAAGTGGGTTTAACGATGT+CGG + Chr8:39987468-39987487 None:intergenic 35.0%
! ATGTCTTCCTTGTGAAGTTT+TGG - Chr8:39988381-39988400 MsG0880044325.01.T01:CDS 35.0%
! TCTCCTTGGTTTGATGTTTA+TGG - Chr8:39988244-39988263 MsG0880044325.01.T01:CDS 35.0%
! TGTGTTGTTAGCATTAAAGC+CGG - Chr8:39988055-39988074 MsG0880044325.01.T01:CDS 35.0%
!!! ATGGTAATGATTTTGGTTGG+GGG - Chr8:39988263-39988282 MsG0880044325.01.T01:CDS 35.0%
ATACCAGAGGTGACAAAACT+CGG + Chr8:39988193-39988212 None:intergenic 40.0%
ATGAGCGAAAATTGCTTGCA+AGG + Chr8:39987903-39987922 None:intergenic 40.0%
ATTGCCTCCAAAACTTCACA+AGG + Chr8:39988391-39988410 None:intergenic 40.0%
CAAGTAACAGAGTTAGTCGA+CGG - Chr8:39987569-39987588 MsG0880044325.01.T01:CDS 40.0%
CACAAGGAAGACATACTTCA+AGG + Chr8:39988375-39988394 None:intergenic 40.0%
CACAATAGAGTCACGAAATG+AGG - Chr8:39987760-39987779 MsG0880044325.01.T01:CDS 40.0%
CCAAAATAATCCTCAGGCAA+CGG + Chr8:39988019-39988038 None:intergenic 40.0%
GACACAACATCCATAAACTC+GGG + Chr8:39988424-39988443 None:intergenic 40.0%
GGACACAACATCCATAAACT+CGG + Chr8:39988425-39988444 None:intergenic 40.0%
GTGAATAGGAGGATGATAAG+TGG + Chr8:39987483-39987502 None:intergenic 40.0%
GTTAACCACGTGATTGTTGA+TGG - Chr8:39987611-39987630 MsG0880044325.01.T01:CDS 40.0%
GTTACTTGGACTGCAAGTAA+CGG + Chr8:39987557-39987576 None:intergenic 40.0%
TATGGCCAACAGTGATTCAT+TGG - Chr8:39988210-39988229 MsG0880044325.01.T01:CDS 40.0%
TGGAAATGATCCCGAGTTTA+TGG - Chr8:39988411-39988430 MsG0880044325.01.T01:CDS 40.0%
! AGTGATTCATTGGTGATTGG+TGG - Chr8:39988220-39988239 MsG0880044325.01.T01:CDS 40.0%
!! TCTTCCTTGTGAAGTTTTGG+AGG - Chr8:39988384-39988403 MsG0880044325.01.T01:CDS 40.0%
!!! TGTGAAGTTTTGGAGGCAAT+TGG - Chr8:39988391-39988410 MsG0880044325.01.T01:CDS 40.0%
!!! TTGTTGATGGTACGTCGTTT+TGG - Chr8:39987624-39987643 MsG0880044325.01.T01:CDS 40.0%
AAATAATCCTCAGGCAACGG+AGG + Chr8:39988016-39988035 None:intergenic 45.0%
ACGAATTTCGCTTCTGCTTG+TGG + Chr8:39987962-39987981 None:intergenic 45.0%
ACGTACCATCAACAATCACG+TGG + Chr8:39987619-39987638 None:intergenic 45.0%
CAACTTCTCATCTGTGTGCA+AGG + Chr8:39988140-39988159 None:intergenic 45.0%
CGAATTTCGCTTCTGCTTGT+GGG + Chr8:39987961-39987980 None:intergenic 45.0%
GCGAAATTCGTGCTGGATAT+TGG - Chr8:39987971-39987990 MsG0880044325.01.T01:CDS 45.0%
TTAGTCGACGGCATCTTCAT+TGG - Chr8:39987581-39987600 MsG0880044325.01.T01:CDS 45.0%
! CATTAAAGCCGGTGACTTGT+TGG - Chr8:39988066-39988085 MsG0880044325.01.T01:CDS 45.0%
! CCGTTGCCTGAGGATTATTT+TGG - Chr8:39988016-39988035 MsG0880044325.01.T01:CDS 45.0%
! CGTCGACTAACTCTGTTACT+TGG + Chr8:39987571-39987590 None:intergenic 45.0%
! TCATGGGCTGAAATCTCGAA+AGG - Chr8:39987659-39987678 MsG0880044325.01.T01:CDS 45.0%
!! GAGTTTTGTCACCTCTGGTA+TGG - Chr8:39988192-39988211 MsG0880044325.01.T01:CDS 45.0%
ACCGTCTTCCAACAAGTCAC+CGG + Chr8:39988077-39988096 None:intergenic 50.0%
AGCAGAAGCGAAATTCGTGC+TGG - Chr8:39987964-39987983 MsG0880044325.01.T01:CDS 50.0%
ATCACTGTTGGCCATACCAG+AGG + Chr8:39988206-39988225 None:intergenic 50.0%
GTGTATGCGGGTGTAGAAGA+TGG - Chr8:39988340-39988359 MsG0880044325.01.T01:CDS 50.0%
TTTGGTTGGGGGAAACCTGT+GGG - Chr8:39988274-39988293 MsG0880044325.01.T01:CDS 50.0%
! GGGGGTGCGAGTAAAAGAAA+TGG - Chr8:39988307-39988326 MsG0880044325.01.T01:CDS 50.0%
! TGGTGATTGGTGGTTCTCCT+TGG - Chr8:39988230-39988249 MsG0880044325.01.T01:CDS 50.0%
!! ACACCGAGTTTTGTCACCTC+TGG - Chr8:39988187-39988206 MsG0880044325.01.T01:CDS 50.0%
!! GTGACTTGTTGGAAGACGGT+GGG - Chr8:39988077-39988096 MsG0880044325.01.T01:CDS 50.0%
!! TTTTGGTTGGGGGAAACCTG+TGG - Chr8:39988273-39988292 MsG0880044325.01.T01:CDS 50.0%
AAACCTGTGGGGGTTCGAAG+TGG - Chr8:39988286-39988305 MsG0880044325.01.T01:CDS 55.0%
AACCTGTGGGGGTTCGAAGT+GGG - Chr8:39988287-39988306 MsG0880044325.01.T01:CDS 55.0%
GGCAACGGAGGAATCAACCT+TGG + Chr8:39988004-39988023 None:intergenic 55.0%
TTGGTTGGGGGAAACCTGTG+GGG - Chr8:39988275-39988294 MsG0880044325.01.T01:CDS 55.0%
! GAAGACGGTGGGCTTGGTAA+GGG - Chr8:39988088-39988107 MsG0880044325.01.T01:CDS 55.0%
! GTTGATTCCTCCGTTGCCTG+AGG - Chr8:39988006-39988025 MsG0880044325.01.T01:CDS 55.0%
! TGGGCTTGGTAAGGGCTCTT+TGG - Chr8:39988096-39988115 MsG0880044325.01.T01:CDS 55.0%
! TTGTTGGAAGACGGTGGGCT+TGG - Chr8:39988082-39988101 MsG0880044325.01.T01:CDS 55.0%
!! GCCGGTGACTTGTTGGAAGA+CGG - Chr8:39988073-39988092 MsG0880044325.01.T01:CDS 55.0%
!! GGTGACTTGTTGGAAGACGG+TGG - Chr8:39988076-39988095 MsG0880044325.01.T01:CDS 55.0%
ACCTGTGGGGGTTCGAAGTG+GGG - Chr8:39988288-39988307 MsG0880044325.01.T01:CDS 60.0%
TGGTTGGGGGAAACCTGTGG+GGG - Chr8:39988276-39988295 MsG0880044325.01.T01:CDS 60.0%
! GGAAGACGGTGGGCTTGGTA+AGG - Chr8:39988087-39988106 MsG0880044325.01.T01:CDS 60.0%
CCTGTGGGGGTTCGAAGTGG+GGG - Chr8:39988289-39988308 MsG0880044325.01.T01:CDS 65.0%
CCCCCACTTCGAACCCCCAC+AGG + Chr8:39988292-39988311 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr8 gene 39987407 39988450 39987407 ID=MsG0880044325.01;Name=MsG0880044325.01
Chr8 mRNA 39987407 39988450 39987407 ID=MsG0880044325.01.T01;Parent=MsG0880044325.01;Name=MsG0880044325.01.T01;_AED=0.27;_eAED=0.27;_QI=0|-1|0|1|-1|1|1|0|347
Chr8 exon 39987407 39988450 39987407 ID=MsG0880044325.01.T01:exon:7754;Parent=MsG0880044325.01.T01
Chr8 CDS 39987407 39988450 39987407 ID=MsG0880044325.01.T01:cds;Parent=MsG0880044325.01.T01
Gene Sequence

>MsG0880044325.01.T01

ATGTGCAACAACAAAGGGGCACTCTTTGTTCATGCCGTAGCAAAAAACATTAGTGTTGCCGACATCGTTAAACCCACTTATCATCCTCCTATTCACCACTCATTTTTTGCTCTAAATGGAGTTAAAAACTATGAAGGAACATCACAACCGTTACTTGCAGTCCAAGTAACAGAGTTAGTCGACGGCATCTTCATTGGCTTCACAGTTAACCACGTGATTGTTGATGGTACGTCGTTTTGGCATTTCATCAATTCATGGGCTGAAATCTCGAAAGGTTGTCTTAAAATATCCAAACTTCCAACATTTGATCGTTGGTTTTCAAAAGGTATTGAATGTCCCATTAGATTTCCTTTCACAATAGAGTCACGAAATGAGGATAATTATGAAGAAGGAAAAATCAACTTTCCAGAGAGAGTATTTCATTTCAAAAAGGAGAGTATCGCAAAACTAAAATTCAAAGCAAACTTAGAGGTTGGTACAAAAAATATATCTTCCTTGCAAGCAATTTTCGCTCATATTTGGCGATCTATTATACGTTGCAAAAAACTTGACCCACAAGCAGAAGCGAAATTCGTGCTGGATATTGGAATTAGACCAAGGTTGATTCCTCCGTTGCCTGAGGATTATTTTGGTAATGCTGTGATAGATTGTGTTGTTAGCATTAAAGCCGGTGACTTGTTGGAAGACGGTGGGCTTGGTAAGGGCTCTTTGGAGATGAACAAGATGATTGCCTTGCACACAGATGAGAAGTTGAAAAATCAATATGAAAATTGGTTAATAACACCGAGTTTTGTCACCTCTGGTATGGCCAACAGTGATTCATTGGTGATTGGTGGTTCTCCTTGGTTTGATGTTTATGGTAATGATTTTGGTTGGGGGAAACCTGTGGGGGTTCGAAGTGGGGGTGCGAGTAAAAGAAATGGAAAGATTTATGTGTATGCGGGTGTAGAAGATGGTAGTATGAACCTTGAAGTATGTCTTCCTTGTGAAGTTTTGGAGGCAATTGGAAATGATCCCGAGTTTATGGATGTTGTGTCCTACTAA
Protein sequence

>MsG0880044325.01.T01

MCNNKGALFVHAVAKNISVADIVKPTYHPPIHHSFFALNGVKNYEGTSQPLLAVQVTELVDGIFIGFTVNHVIVDGTSFWHFINSWAEISKGCLKISKLPTFDRWFSKGIECPIRFPFTIESRNEDNYEEGKINFPERVFHFKKESIAKLKFKANLEVGTKNISSLQAIFAHIWRSIIRCKKLDPQAEAKFVLDIGIRPRLIPPLPEDYFGNAVIDCVVSIKAGDLLEDGGLGKGSLEMNKMIALHTDEKLKNQYENWLITPSFVTSGMANSDSLVIGGSPWFDVYGNDFGWGKPVGVRSGGASKRNGKIYVYAGVEDGSMNLEVCLPCEVLEAIGNDPEFMDVVSY*