AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480019042.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480019042.01.T01 MTR_4g022670 94.479 326 18 0 298 623 93 418 0.0 645
MsG0480019042.01.T01 MTR_4g022800 83.180 327 54 1 298 623 93 419 0.0 575
MsG0480019042.01.T01 MTR_4g022720 80.675 326 57 1 298 623 93 412 0.0 555
MsG0480019042.01.T01 MTR_7g026860 76.994 326 72 1 298 623 93 415 0.0 536
MsG0480019042.01.T01 MTR_4g022825 73.006 326 87 1 298 623 93 417 3.47e-171 494
MsG0480019042.01.T01 MTR_4g022760 71.472 326 49 1 298 623 93 374 5.82e-165 477
MsG0480019042.01.T01 MTR_3g026310 64.865 333 110 2 298 623 93 425 7.20e-148 435
MsG0480019042.01.T01 MTR_3g088420 65.337 326 105 2 298 623 93 410 8.04e-148 435
MsG0480019042.01.T01 MTR_0190s0020 58.359 329 125 4 297 623 101 419 2.33e-131 393
MsG0480019042.01.T01 MTR_8g041770 60.671 328 116 4 298 623 102 418 4.64e-129 387
MsG0480019042.01.T01 MTR_4g094842 60.790 329 116 5 298 623 107 425 1.32e-124 375
MsG0480019042.01.T01 MTR_4g094832 57.530 332 122 6 298 623 89 407 1.14e-121 367
MsG0480019042.01.T01 MTR_4g094835 55.120 332 130 5 298 623 105 423 1.00e-114 350
MsG0480019042.01.T01 MTR_4g022290 52.199 341 131 9 298 623 99 422 1.44e-102 318
MsG0480019042.01.T01 MTR_4g094838 50.301 332 130 5 298 623 107 409 2.37e-101 315
MsG0480019042.01.T01 MTR_8g079710 50.888 338 141 7 298 623 98 422 1.42e-99 311
MsG0480019042.01.T01 MTR_4g094828 50.445 337 149 8 298 623 98 427 9.25e-97 304
MsG0480019042.01.T01 MTR_6g016815 50.492 305 95 6 298 602 107 355 1.24e-85 273
MsG0480019042.01.T01 MTR_7g026770 67.172 198 37 1 346 543 132 301 6.17e-84 265
MsG0480019042.01.T01 MTR_3g101930 40.841 333 179 6 298 623 111 432 2.95e-72 240
MsG0480019042.01.T01 MTR_3g101900 40.909 330 180 7 298 623 107 425 1.28e-71 238
MsG0480019042.01.T01 MTR_8g040780 56.566 198 82 2 430 623 12 209 4.33e-65 214
MsG0480019042.01.T01 MTR_3g102020 40.483 331 181 6 298 623 109 428 1.85e-64 219
MsG0480019042.01.T01 MTR_3g101960 39.458 332 185 6 297 623 107 427 4.10e-64 218
MsG0480019042.01.T01 MTR_3g101970 39.210 329 174 6 298 623 109 414 4.31e-62 212
MsG0480019042.01.T01 MTR_3g102010 37.612 335 189 6 298 623 105 428 5.77e-61 210
MsG0480019042.01.T01 MTR_6g034485 61.364 132 43 1 394 525 2 125 9.46e-48 164
MsG0480019042.01.T01 MTR_7g026850 73.529 102 27 0 299 400 77 178 2.92e-47 164
MsG0480019042.01.T01 MTR_7g026800 54.386 171 47 4 413 582 16 156 2.33e-46 162
MsG0480019042.01.T01 MTR_4g022780 53.801 171 48 4 413 582 17 157 7.82e-46 160
MsG0480019042.01.T01 MTR_3g102030 35.065 308 161 5 297 602 50 320 2.51e-45 164
MsG0480019042.01.T01 MTR_8g040760 68.696 115 35 1 298 412 99 212 5.20e-44 157
MsG0480019042.01.T01 MTR_3g070170 31.507 365 189 9 296 619 98 442 4.75e-42 159
MsG0480019042.01.T01 MTR_4g015180 29.897 388 197 10 296 623 92 464 5.64e-40 153
MsG0480019042.01.T01 MTR_6g045553 31.024 332 193 8 323 623 126 452 6.26e-40 152
MsG0480019042.01.T01 MTR_5g081960 29.973 377 209 9 296 623 93 463 1.59e-39 152
MsG0480019042.01.T01 MTR_4g094825 47.368 152 57 3 474 623 238 368 1.44e-34 135
MsG0480019042.01.T01 MTR_4g094825 55.140 107 46 1 298 404 165 269 5.85e-30 122
MsG0480019042.01.T01 MTR_6g034495 65.306 98 31 2 290 385 68 164 3.69e-34 128
MsG0480019042.01.T01 MTR_7g026870 86.765 68 4 1 494 556 84 151 1.07e-31 120
MsG0480019042.01.T01 MTR_7g026830 76.712 73 17 0 299 371 26 98 2.26e-31 117
MsG0480019042.01.T01 MTR_3g098980 28.923 325 190 12 289 598 91 389 5.42e-24 105
MsG0480019042.01.T01 MTR_8g075610 26.582 316 218 8 297 608 80 385 9.48e-24 104
MsG0480019042.01.T01 MTR_7g026780 57.471 87 13 1 537 623 26 88 1.56e-23 96.3
MsG0480019042.01.T01 MTR_2g105330 27.329 322 219 8 286 603 81 391 2.13e-22 100
MsG0480019042.01.T01 MTR_4g007540 27.245 323 200 10 297 603 89 392 2.58e-22 100
MsG0480019042.01.T01 MTR_2g064495 27.019 322 220 8 286 603 81 391 4.11e-22 99.8
MsG0480019042.01.T01 MTR_8g096530 29.595 321 178 12 296 597 91 382 1.55e-20 95.1
MsG0480019042.01.T01 MTR_3g026950 27.645 293 159 13 342 598 129 404 1.15e-19 92.4
MsG0480019042.01.T01 MTR_3g049150 27.500 280 183 8 342 604 130 406 1.98e-17 85.9
MsG0480019042.01.T01 MTR_4g070440 52.874 87 26 2 191 276 2 74 1.45e-16 75.9
MsG0480019042.01.T01 MTR_4g013050 26.959 319 175 12 297 598 86 363 4.29e-16 81.3
MsG0480019042.01.T01 MTR_3g093120 40.217 92 55 0 210 301 278 369 3.31e-15 79.3
MsG0480019042.01.T01 MTR_1g113050 52.809 89 36 3 48 131 2 89 3.72e-15 71.6
MsG0480019042.01.T01 MTR_2g089765 26.389 288 168 11 342 597 159 434 3.98e-15 79.0
MsG0480019042.01.T01 MTR_3g452820 52.113 71 34 0 225 295 1 71 5.89e-15 73.9
MsG0480019042.01.T01 MTR_7g027175 25.723 311 203 9 297 598 101 392 1.66e-14 76.6
MsG0480019042.01.T01 MTR_2g089670 26.259 278 169 9 342 597 166 429 1.69e-14 76.6
MsG0480019042.01.T01 MTR_6g015320 25.725 276 178 9 343 600 143 409 9.57e-14 74.3
MsG0480019042.01.T01 MTR_7g015860 25.172 290 172 10 337 598 141 413 1.93e-13 73.2
MsG0480019042.01.T01 MTR_2g089755 25.658 304 194 12 342 623 162 455 1.97e-13 73.6
MsG0480019042.01.T01 MTR_2g089650 24.585 301 197 12 342 623 154 443 2.39e-13 73.2
MsG0480019042.01.T01 MTR_7g014330 27.143 280 177 10 343 601 140 413 7.45e-13 71.6
MsG0480019042.01.T01 MTR_3g087640 24.920 313 209 9 331 623 146 452 9.95e-13 71.2
MsG0480019042.01.T01 MTR_1g040195 25.070 359 219 15 278 609 36 371 3.22e-12 69.3
MsG0480019042.01.T01 MTR_7g014250 25.000 344 209 12 287 601 90 413 3.36e-12 69.3
MsG0480019042.01.T01 MTR_7g021330 54.717 53 24 0 249 301 22 74 2.37e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480019042.01.T01 AT3G50300 39.740 385 196 12 260 623 51 420 7.24e-72 239
MsG0480019042.01.T01 AT5G67150 39.701 335 182 9 298 623 100 423 1.38e-66 225
MsG0480019042.01.T01 AT3G50270 36.829 391 214 12 255 623 46 425 8.48e-63 214
MsG0480019042.01.T01 AT5G67160 39.697 330 181 9 298 623 94 409 2.29e-62 213
MsG0480019042.01.T01 AT3G50280 37.910 335 187 8 298 623 98 420 4.28e-62 213
MsG0480019042.01.T01 AT5G07850 37.941 340 194 8 290 623 102 430 9.51e-59 204
MsG0480019042.01.T01 AT5G42830 36.550 342 198 8 290 623 96 426 1.23e-58 203
MsG0480019042.01.T01 AT3G50280 38.333 300 165 7 332 623 3 290 1.17e-57 197
MsG0480019042.01.T01 AT5G07860 37.838 333 177 8 301 623 114 426 8.25e-57 199
MsG0480019042.01.T01 AT5G38130 37.126 334 189 10 298 623 118 438 8.83e-55 193
MsG0480019042.01.T01 AT5G07870 37.685 337 189 8 298 623 112 438 1.55e-53 190
MsG0480019042.01.T01 AT5G01210 33.156 377 179 11 296 623 94 446 1.03e-50 182
MsG0480019042.01.T01 AT3G50290 40.511 274 150 6 327 595 4 269 1.98e-50 176
MsG0480019042.01.T01 AT2G39980 30.649 385 189 10 296 623 94 457 2.14e-47 174
MsG0480019042.01.T01 AT5G23940 33.618 351 216 10 282 623 87 429 6.98e-45 167
MsG0480019042.01.T01 AT5G48930 27.239 268 187 4 340 603 129 392 4.04e-23 102
MsG0480019042.01.T01 AT4G23160 40.523 153 85 2 155 307 293 439 7.02e-23 104
MsG0480019042.01.T01 AT4G23160 40.523 153 85 2 155 307 293 439 7.02e-23 104
MsG0480019042.01.T01 AT3G48720 30.451 266 157 11 342 598 139 385 1.91e-18 88.6
MsG0480019042.01.T01 AT5G63560 27.481 262 165 8 342 598 140 381 1.70e-15 79.7
MsG0480019042.01.T01 AT5G57840 24.694 409 251 18 233 608 18 402 6.43e-15 77.8
MsG0480019042.01.T01 AT2G25150 25.188 266 181 7 344 601 148 403 3.92e-14 75.5
MsG0480019042.01.T01 AT3G29670 23.197 319 218 10 296 600 99 404 7.06e-14 74.7
MsG0480019042.01.T01 AT3G29635 24.384 365 240 13 253 597 58 406 2.33e-13 73.2
MsG0480019042.01.T01 AT3G29590 23.913 322 214 12 296 600 96 403 2.78e-13 72.8
MsG0480019042.01.T01 AT1G28680 24.101 278 174 11 337 600 135 389 5.25e-13 72.0
MsG0480019042.01.T01 AT5G61160 24.727 275 181 10 340 598 139 403 8.20e-13 71.2
MsG0480019042.01.T01 AT5G39080 25.316 316 190 12 340 623 140 441 2.26e-12 70.1
MsG0480019042.01.T01 AT2G19070 24.629 337 206 15 297 603 91 409 3.32e-12 69.3
MsG0480019042.01.T01 AT1G28680 24.889 225 149 8 337 554 135 346 2.14e-11 66.6
MsG0480019042.01.T01 AT5G39050 23.333 330 210 13 321 620 126 442 6.41e-11 65.5

Find 151 sgRNAs with CRISPR-Local

Find 281 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGTAAACTTTGTTATATTT+TGG 0.075138 4:-13719590 MsG0480019042.01.T01:CDS
TCTCCATGGTTTGATGTTTA+TGG 0.113342 4:-13716841 MsG0480019042.01.T01:CDS
TTCTTGCTACTAGCTCTTTA+TGG 0.138976 4:-13720059 MsG0480019042.01.T01:CDS
TTCCATTCATGATCAAATTT+TGG 0.163927 4:-13720018 MsG0480019042.01.T01:CDS
GGGGAGCCGTTATCTGATTT+AGG 0.219433 4:-13719424 MsG0480019042.01.T01:CDS
CCGTTACCAGAAGATTATTT+TGG 0.221902 4:-13717072 MsG0480019042.01.T01:CDS
AATGGATAAGAAATTATTAT+TGG 0.233186 4:+13716870 None:intergenic
CGCAGTGGATATAAAATAAA+TGG 0.235319 4:-13716784 MsG0480019042.01.T01:CDS
TAAGAAATCCAAGCTTTGTT+AGG 0.280992 4:-13716906 MsG0480019042.01.T01:CDS
CACCTGTTCAGCAGGATTAC+TGG 0.284478 4:+13720109 None:intergenic
GGCTCTATCAATACCAATAT+TGG 0.292835 4:-13720182 MsG0480019042.01.T01:CDS
TTTGGTGTTTGTTGATGTTT+TGG 0.298809 4:-13720000 MsG0480019042.01.T01:CDS
CATACGATTTCCTTTCACTA+TGG 0.304291 4:-13717364 MsG0480019042.01.T01:CDS
GGGAGCCGTTATCTGATTTA+GGG 0.333226 4:-13719423 MsG0480019042.01.T01:CDS
GATGTTTATGGTAATGATTT+CGG 0.343194 4:-13716829 MsG0480019042.01.T01:CDS
TATCCACTGCGAACTGCTAT+AGG 0.347610 4:+13716796 None:intergenic
CGCCAGTAATCCTGCTGAAC+AGG 0.356476 4:-13720111 MsG0480019042.01.T01:CDS
GAAACCAACGCTCTAGTGTT+GGG 0.360883 4:+13717406 None:intergenic
TTTAGGGAGGTATAGGAGAT+TGG 0.368499 4:-13719407 MsG0480019042.01.T01:CDS
AACACAAAATTAGTCGTTGT+TGG 0.373290 4:-13719800 MsG0480019042.01.T01:CDS
AGATAACGGCTCCCCATGAT+TGG 0.373876 4:+13719432 None:intergenic
TTGGGTAGAAGTTTGACATT+AGG 0.375028 4:+13719451 None:intergenic
ATCAAAGGGGATCCAGAAAA+AGG 0.382410 4:-13719259 MsG0480019042.01.T01:intron
TTACCAGACTATCCTTTGAT+TGG 0.383747 4:+13719554 None:intergenic
ATCTAAAACTCAGGGGTCTC+AGG 0.383769 4:-13719709 MsG0480019042.01.T01:intron
GAGTTTCCAAAATAATCTTC+TGG 0.384510 4:+13717066 None:intergenic
TAGCAACATCCATGTATTCT+TGG 0.400102 4:+13719299 None:intergenic
AGCTCCTTCACCTGTTCAGC+AGG 0.402011 4:+13720101 None:intergenic
ATTCATTCAAAGACGATAGA+TGG 0.402154 4:-13720203 MsG0480019042.01.T01:CDS
ATGGGAAGTTGAATACCATT+TGG 0.405055 4:+13717384 None:intergenic
TTCAACCATGTTGTCGTTGA+CGG 0.405415 4:-13717504 MsG0480019042.01.T01:CDS
AAACCATGGAGAACTACTAA+TGG 0.406093 4:+13716852 None:intergenic
GGAATTGTAAATGTATTTGC+TGG 0.411545 4:-13716763 MsG0480019042.01.T01:CDS
TATCTGATTTAGGGAGGTAT+AGG 0.415273 4:-13719414 MsG0480019042.01.T01:CDS
TGTCAGAAGGAGGATCTACC+TGG 0.417235 4:+13719745 None:intergenic
ACAGTTGCCCTTGGATCTCT+TGG 0.423214 4:-13719894 MsG0480019042.01.T01:CDS
CACCAAAATTTGATCATGAA+TGG 0.427098 4:+13720016 None:intergenic
GATTATATACTTCTTCTTGT+GGG 0.433778 4:+13717130 None:intergenic
AGTGTGAAAATTACCAATAT+TGG 0.439407 4:+13720169 None:intergenic
GGATTCTAAAATACATCAAA+GGG 0.439638 4:-13719273 MsG0480019042.01.T01:CDS
TGTATAGTCAAAATGAAAGT+TGG 0.440205 4:-13717033 MsG0480019042.01.T01:CDS
TACCAGACTATCCTTTGATT+GGG 0.440403 4:+13719555 None:intergenic
GGCAAGGAAAATTTAAGAGT+TGG 0.442448 4:+13719320 None:intergenic
TATGGTAATGATTTCGGATG+GGG 0.444025 4:-13716823 MsG0480019042.01.T01:CDS
AAGCGCTATTAACTCACCTT+TGG 0.445268 4:-13717182 MsG0480019042.01.T01:CDS
GACGAAGGTGGATTATATAA+AGG 0.446121 4:-13717000 MsG0480019042.01.T01:CDS
GTCAAACTTCTACCCAATCA+TGG 0.448183 4:-13719445 MsG0480019042.01.T01:CDS
AATGAAAGTTGGTGAGTTGT+TGG 0.448624 4:-13717022 MsG0480019042.01.T01:CDS
TGTGGCATTTCATTAATTCA+TGG 0.451210 4:-13717473 MsG0480019042.01.T01:CDS
AAGAAATCCAAGCTTTGTTA+GGG 0.462160 4:-13716905 MsG0480019042.01.T01:CDS
GTGGCATTTCATTAATTCAT+GGG 0.463542 4:-13717472 MsG0480019042.01.T01:CDS
AGCCCAATCAAAGGATAGTC+TGG 0.469675 4:-13719557 MsG0480019042.01.T01:CDS
GGGAGGTATAGGAGATTGGT+TGG 0.473780 4:-13719403 MsG0480019042.01.T01:CDS
TACTTGTGTTGATGACATCT+TGG 0.474749 4:-13717661 MsG0480019042.01.T01:CDS
TCAAGCAACATCTAAAACTC+AGG 0.483443 4:-13719718 MsG0480019042.01.T01:CDS
CCAAGGGCAACTGTATCACT+TGG 0.483997 4:+13719903 None:intergenic
AGATTATATACTTCTTCTTG+TGG 0.484423 4:+13717129 None:intergenic
CCAAAATAATCTTCTGGTAA+CGG 0.486289 4:+13717072 None:intergenic
AATCTAGTCGTGATAGGAGT+TGG 0.488221 4:-13717111 MsG0480019042.01.T01:CDS
TGGGTCAAATTGTTTGCAAC+GGG 0.488474 4:+13717149 None:intergenic
GTCACACTTGGGACGAGACT+TGG 0.491834 4:+13719839 None:intergenic
CTAGCAACCCTAACAAAGCT+TGG 0.494801 4:+13716898 None:intergenic
GTATATAATCTAGTCGTGAT+AGG 0.497624 4:-13717117 MsG0480019042.01.T01:CDS
TGTCCGGACGAGTGACTGTA+AGG 0.511200 4:+13719368 None:intergenic
GGAAACCAACGCTCTAGTGT+TGG 0.511281 4:+13717405 None:intergenic
AATACATGGATGTTGCTATC+CGG 0.511703 4:-13719294 MsG0480019042.01.T01:CDS
TGAAGAATCACTATGAGTCT+TGG 0.513376 4:-13716930 MsG0480019042.01.T01:CDS
CATAGTGAAAGGAAATCGTA+TGG 0.513721 4:+13717365 None:intergenic
CGGATTCTAAAATACATCAA+AGG 0.515468 4:-13719274 MsG0480019042.01.T01:CDS
CTAGAGCGTTGGTTTCCAAA+TGG 0.515960 4:-13717399 MsG0480019042.01.T01:CDS
ACCTGGGCTGTATTCACTTG+AGG 0.517033 4:+13719762 None:intergenic
AGGCACGTCAAAACCATTGT+TGG 0.517049 4:-13717574 MsG0480019042.01.T01:CDS
ACAATTAGAGGAACGTAGAC+CGG 0.517745 4:+13717636 None:intergenic
ATCATGAATGGAAGAATACT+CGG 0.518334 4:+13720028 None:intergenic
TTTATGGTAATGATTTCGGA+TGG 0.520125 4:-13716825 MsG0480019042.01.T01:CDS
CCAAGTGATACAGTTGCCCT+TGG 0.524586 4:-13719903 MsG0480019042.01.T01:CDS
CATAAGAGTATCAACTAGCT+TGG 0.525386 4:+13719477 None:intergenic
TTACCTTACAGTCACTCGTC+CGG 0.526760 4:-13719371 MsG0480019042.01.T01:CDS
GATAACGGCTCCCCATGATT+GGG 0.527546 4:+13719433 None:intergenic
TGTTGATGACATCTTGGGAC+CGG 0.532244 4:-13717655 MsG0480019042.01.T01:CDS
ATCACAACGAAAATATGCTA+TGG 0.534404 4:-13719530 MsG0480019042.01.T01:CDS
TCAAACTTCTACCCAATCAT+GGG 0.538662 4:-13719444 MsG0480019042.01.T01:CDS
GTGGGTCAAATTGTTTGCAA+CGG 0.538778 4:+13717148 None:intergenic
GTCAACGACAACATGGTTGA+AGG 0.541580 4:+13717506 None:intergenic
TACCTCCCTAAATCAGATAA+CGG 0.541755 4:+13719418 None:intergenic
GGAGGTATAGGAGATTGGTT+GGG 0.541972 4:-13719402 MsG0480019042.01.T01:CDS
TCGATTACAATGGTCACACT+TGG 0.543473 4:+13719827 None:intergenic
TATCCATTAGTAGTTCTCCA+TGG 0.544589 4:-13716855 MsG0480019042.01.T01:CDS
GGTGAGTTGTTGGACGAAGG+TGG 0.550907 4:-13717012 MsG0480019042.01.T01:CDS
CAGGATTACTGGCGGCGAGA+GGG 0.552205 4:+13720120 None:intergenic
GCCTCAAGTGAATACAGCCC+AGG 0.553624 4:-13719763 MsG0480019042.01.T01:CDS
ACTTTGACGGCACTCGAAGA+AGG 0.556297 4:+13719955 None:intergenic
AGTCGTTGTTGGAAGTTGCA+TGG 0.558929 4:-13719789 MsG0480019042.01.T01:CDS
TGGATGAACCTCTGCGAGAG+AGG 0.559920 4:+13719859 None:intergenic
TTATGGTAATGATTTCGGAT+GGG 0.560500 4:-13716824 MsG0480019042.01.T01:CDS
GACTCAATGGAATACTTTGA+CGG 0.562500 4:+13719942 None:intergenic
CAAGGGCAACTGTATCACTT+GGG 0.562621 4:+13719904 None:intergenic
CTAACTGCAAACGAAATGTC+CGG 0.564183 4:+13719352 None:intergenic
AACAAAATAGCCATTGTGAT+GGG 0.565478 4:-13717338 MsG0480019042.01.T01:CDS
ACTTGTGTTGATGACATCTT+GGG 0.567798 4:-13717660 MsG0480019042.01.T01:CDS
GAAATCGAAAATCAATGAAG+AGG 0.568871 4:-13717232 MsG0480019042.01.T01:CDS
AAACCAACGCTCTAGTGTTG+GGG 0.569521 4:+13717407 None:intergenic
GTATTTGCTGGAATAAAAGA+AGG 0.573561 4:-13716751 MsG0480019042.01.T01:CDS
CAACAAAATAGCCATTGTGA+TGG 0.573773 4:-13717339 MsG0480019042.01.T01:CDS
CAAGCAACATCTAAAACTCA+GGG 0.578147 4:-13719717 MsG0480019042.01.T01:CDS
TAATCCTGCTGAACAGGTGA+AGG 0.579308 4:-13720105 MsG0480019042.01.T01:CDS
ACTTTCCGTCAACGACAACA+TGG 0.580850 4:+13717499 None:intergenic
GATTATTACCAAGAGATCCA+AGG 0.585489 4:+13719886 None:intergenic
CAAGTTAATTGCTTCACACA+CGG 0.586291 4:-13716962 MsG0480019042.01.T01:CDS
CAAGTAACGGAGCTAGTTGA+CGG 0.586570 4:-13717546 MsG0480019042.01.T01:CDS
GCAACTGTATCACTTGGGGC+AGG 0.588138 4:+13719909 None:intergenic
ATTGTTGGCTGTTCAAGTAA+CGG 0.588367 4:-13717559 MsG0480019042.01.T01:CDS
CATTTCGTTTGCAGTTAGTG+TGG 0.588828 4:-13719347 MsG0480019042.01.T01:CDS
GTTGGTGAGTTGTTGGACGA+AGG 0.590545 4:-13717015 MsG0480019042.01.T01:CDS
GAAATATCACGTGGTTGTTG+TGG 0.597765 4:-13717447 MsG0480019042.01.T01:CDS
AGGAATTGCAGATGACTCAA+TGG 0.599121 4:+13719929 None:intergenic
ACATCCATGTATTCTTGGCA+AGG 0.599271 4:+13719304 None:intergenic
GGTAACGGTGGAACAAACCT+TGG 0.603404 4:+13717087 None:intergenic
AACGGGTGACAAAGCACCAA+AGG 0.603630 4:+13717166 None:intergenic
GTTGCTTGAACATTGTCAGA+AGG 0.605333 4:+13719732 None:intergenic
GCTTGAACATTGTCAGAAGG+AGG 0.607609 4:+13719735 None:intergenic
ATTATTACCAAGAGATCCAA+GGG 0.609117 4:+13719887 None:intergenic
TGTGTTCGAATCGATTACAA+TGG 0.612898 4:+13719817 None:intergenic
GATTAAGGTAGCCCAATCAA+AGG 0.614028 4:-13719566 MsG0480019042.01.T01:CDS
CGATTACAATGGTCACACTT+GGG 0.617247 4:+13719828 None:intergenic
GCAGGATTACTGGCGGCGAG+AGG 0.623809 4:+13720119 None:intergenic
TAGGTTATTTCATTTCACAA+AGG 0.626286 4:-13717271 MsG0480019042.01.T01:CDS
TCATGAATGGAAGAATACTC+GGG 0.626958 4:+13720029 None:intergenic
AACCAACGCTCTAGTGTTGG+GGG 0.632370 4:+13717408 None:intergenic
GTTACTTGAACAGCCAACAA+TGG 0.633211 4:+13717561 None:intergenic
ATAGTGAAAGGAAATCGTAT+GGG 0.637742 4:+13717366 None:intergenic
TAATTTCAGACAAAAGACCT+TGG 0.639346 4:-13719610 MsG0480019042.01.T01:intron
AAATAATCTTCTGGTAACGG+TGG 0.643941 4:+13717075 None:intergenic
TCGTGATAGGAGTTGGACCA+AGG 0.645786 4:-13717104 MsG0480019042.01.T01:CDS
AAGGGCAACTGTATCACTTG+GGG 0.647837 4:+13719905 None:intergenic
AGCCGTTATCTGATTTAGGG+AGG 0.653177 4:-13719420 MsG0480019042.01.T01:CDS
TTACCATAAACATCAAACCA+TGG 0.659822 4:+13716838 None:intergenic
CACTCGAAGAAGGATAAATG+TGG 0.670042 4:+13719965 None:intergenic
GTCAGAAGGAGGATCTACCT+GGG 0.670964 4:+13719746 None:intergenic
AATCAGAACCTCTCTCGCAG+AGG 0.683364 4:-13719867 MsG0480019042.01.T01:CDS
AAATATAACAAAGTTTACCA+AGG 0.685714 4:+13719593 None:intergenic
TGAATTAATGAAATGCCACA+CGG 0.688433 4:+13717476 None:intergenic
AAGTATTCTCTGCTGCAGCG+TGG 0.693165 4:+13717679 None:intergenic
CTGTTCAGCAGGATTACTGG+CGG 0.695759 4:+13720112 None:intergenic
GATTCTAAAATACATCAAAG+GGG 0.699154 4:-13719272 MsG0480019042.01.T01:CDS
CAAACTTCTACCCAATCATG+GGG 0.702113 4:-13719443 MsG0480019042.01.T01:CDS
TGAATGGAAGAATACTCGGG+AGG 0.702978 4:+13720032 None:intergenic
AAACCTATAGCAGTTCGCAG+TGG 0.705186 4:-13716799 MsG0480019042.01.T01:CDS
TCATGGGCTGAAATATCACG+TGG 0.731649 4:-13717456 MsG0480019042.01.T01:CDS
AAGCAACATCTAAAACTCAG+GGG 0.732825 4:-13719716 MsG0480019042.01.T01:CDS
TCGTTGACGGAAAGTCCGTG+TGG 0.742237 4:-13717491 MsG0480019042.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATGAAATAAAATATATAAC+CGG - Chr4:13718186-13718205 MsG0480019042.01.T01:intron 10.0%
!!! AAACAACTTTTAAAATAATT+AGG - Chr4:13718217-13718236 MsG0480019042.01.T01:intron 10.0%
!!! GTTATTATCTTTTAAATATT+TGG + Chr4:13718438-13718457 None:intergenic 10.0%
!!! TTCTAAAAGAATAATTTTTT+AGG - Chr4:13718392-13718411 MsG0480019042.01.T01:intron 10.0%
!!! TTCTTGTATATTTTTTTTAA+CGG - Chr4:13718852-13718871 MsG0480019042.01.T01:intron 10.0%
!! AATAACCTGAAATAATTAAA+TGG - Chr4:13718962-13718981 MsG0480019042.01.T01:intron 15.0%
!! AATGGATAAGAAATTATTAT+TGG + Chr4:13720083-13720102 None:intergenic 15.0%
!!! AAAAACTTTGTTTATCAAAT+AGG - Chr4:13719660-13719679 MsG0480019042.01.T01:intron 15.0%
!!! ATTATTCTTTTAGAAATTTG+TGG + Chr4:13718387-13718406 None:intergenic 15.0%
!! AAAAAAAAAACTAGGTTTGA+AGG + Chr4:13718589-13718608 None:intergenic 20.0%
!! AAAAAAAAACTAGGTTTGAA+GGG + Chr4:13718588-13718607 None:intergenic 20.0%
!! AAATATAACAAAGTTTACCA+AGG + Chr4:13717360-13717379 None:intergenic 20.0%
!! AACATCCATTTAATTATTTC+AGG + Chr4:13718970-13718989 None:intergenic 20.0%
!! AATACATGAGAATATTGTTA+AGG + Chr4:13718788-13718807 None:intergenic 20.0%
!! ACTTGATCAATTAAAAAACT+TGG + Chr4:13718833-13718852 None:intergenic 20.0%
!! GTTGTTGAAAAAAAAAAACT+AGG + Chr4:13718597-13718616 None:intergenic 20.0%
!!! CAACATTTTCAAGAAATAAT+TGG - Chr4:13718265-13718284 MsG0480019042.01.T01:intron 20.0%
!!! GGTAAACTTTGTTATATTTT+GGG - Chr4:13717361-13717380 MsG0480019042.01.T01:CDS 20.0%
!!! GTAAACTTTGTTATATTTTG+GGG - Chr4:13717362-13717381 MsG0480019042.01.T01:CDS 20.0%
!!! TACAAGAATATTTTGTTTTG+AGG + Chr4:13718898-13718917 None:intergenic 20.0%
!!! TCATTTTTCAAAGCTTATTT+AGG + Chr4:13718171-13718190 None:intergenic 20.0%
!!! TGGTAAACTTTGTTATATTT+TGG - Chr4:13717360-13717379 MsG0480019042.01.T01:CDS 20.0%
! AAAAAAAACTAGGTTTGAAG+GGG + Chr4:13718587-13718606 None:intergenic 25.0%
! AAAAATGAATCGACAATTAG+AGG + Chr4:13719329-13719348 None:intergenic 25.0%
! AATAAAATATATAACCGGAG+AGG - Chr4:13718191-13718210 MsG0480019042.01.T01:intron 25.0%
! AGATTATATACTTCTTCTTG+TGG + Chr4:13719824-13719843 None:intergenic 25.0%
! AGTGTGAAAATTACCAATAT+TGG + Chr4:13716784-13716803 None:intergenic 25.0%
! ATTCAAACAGAATATAAGGT+TGG + Chr4:13718696-13718715 None:intergenic 25.0%
! GATTATATACTTCTTCTTGT+GGG + Chr4:13719823-13719842 None:intergenic 25.0%
! GCTTATTCAAACAGAATATA+AGG + Chr4:13718700-13718719 None:intergenic 25.0%
! TGAAAAATAGAAATACAGTG+AGG + Chr4:13718516-13718535 None:intergenic 25.0%
! TGTATAGTCAAAATGAAAGT+TGG - Chr4:13719917-13719936 MsG0480019042.01.T01:CDS 25.0%
! TTCAAAACGAGAATCTTTAT+CGG - Chr4:13718351-13718370 MsG0480019042.01.T01:intron 25.0%
!! AAATATTTGGGTTTGTCAAT+TGG + Chr4:13718425-13718444 None:intergenic 25.0%
!! ATAGTTTTTATCTCCGATAA+AGG + Chr4:13719354-13719373 None:intergenic 25.0%
!! ATTGTATGATCACTTGATTT+TGG + Chr4:13719026-13719045 None:intergenic 25.0%
!! GATGTTTATGGTAATGATTT+CGG - Chr4:13720121-13720140 MsG0480019042.01.T01:CDS 25.0%
!! TAGGTTATTTCATTTCACAA+AGG - Chr4:13719679-13719698 MsG0480019042.01.T01:intron 25.0%
!! TTCCATTCATGATCAAATTT+TGG - Chr4:13716932-13716951 MsG0480019042.01.T01:CDS 25.0%
!!! AAGAGACTCAATTTTAAGAA+TGG - Chr4:13718143-13718162 MsG0480019042.01.T01:intron 25.0%
!!! CTTTGATGTATTTTAGAATC+CGG + Chr4:13717678-13717697 None:intergenic 25.0%
!!! GATTCATTTTTTGCCTTTAT+CGG - Chr4:13719338-13719357 MsG0480019042.01.T01:CDS 25.0%
!!! GATTCTAAAATACATCAAAG+GGG - Chr4:13717678-13717697 MsG0480019042.01.T01:CDS 25.0%
!!! GGATTCTAAAATACATCAAA+GGG - Chr4:13717677-13717696 MsG0480019042.01.T01:CDS 25.0%
!!! TCTCATGTATTTTTTGTACT+CGG - Chr4:13718797-13718816 MsG0480019042.01.T01:intron 25.0%
!!! TTGTTATATTTTGGGGATTA+AGG - Chr4:13717369-13717388 MsG0480019042.01.T01:CDS 25.0%
!!! TTTTCAAGAAATAATTGGAG+AGG - Chr4:13718270-13718289 MsG0480019042.01.T01:intron 25.0%
AACAAAATAGCCATTGTGAT+GGG - Chr4:13719612-13719631 MsG0480019042.01.T01:intron 30.0%
AACAAACATGTGAACTCATT+TGG - Chr4:13717854-13717873 MsG0480019042.01.T01:intron 30.0%
AACACAAAATTAGTCGTTGT+TGG - Chr4:13717150-13717169 MsG0480019042.01.T01:CDS 30.0%
ATACAATCCATTTAACTCCA+TGG - Chr4:13719039-13719058 MsG0480019042.01.T01:intron 30.0%
ATAGTGAAAGGAAATCGTAT+GGG + Chr4:13719587-13719606 None:intergenic 30.0%
ATCACAACGAAAATATGCTA+TGG - Chr4:13717420-13717439 MsG0480019042.01.T01:CDS 30.0%
ATCATGAATGGAAGAATACT+CGG + Chr4:13716925-13716944 None:intergenic 30.0%
ATCGGAGATAAAAACTATGA+AGG - Chr4:13719356-13719375 MsG0480019042.01.T01:CDS 30.0%
ATTATTACCAAGAGATCCAA+GGG + Chr4:13717066-13717085 None:intergenic 30.0%
ATTCATTCAAAGACGATAGA+TGG - Chr4:13716747-13716766 MsG0480019042.01.T01:CDS 30.0%
CACCAAAATTTGATCATGAA+TGG + Chr4:13716937-13716956 None:intergenic 30.0%
CCAAAATAATCTTCTGGTAA+CGG + Chr4:13719881-13719900 None:intergenic 30.0%
CCTAGAACAAGTTATATATG+TGG - Chr4:13718111-13718130 MsG0480019042.01.T01:intron 30.0%
CGCAGTGGATATAAAATAAA+TGG - Chr4:13720166-13720185 MsG0480019042.01.T01:CDS 30.0%
GAAATCGAAAATCAATGAAG+AGG - Chr4:13719718-13719737 MsG0480019042.01.T01:CDS 30.0%
GAGTTTCCAAAATAATCTTC+TGG + Chr4:13719887-13719906 None:intergenic 30.0%
GATAACTTAAACAAGTGGAA+GGG + Chr4:13718650-13718669 None:intergenic 30.0%
GCAACAAAAAAAAAAGTGAG+TGG + Chr4:13718542-13718561 None:intergenic 30.0%
GCAGTCTATCTTAATATGTT+TGG + Chr4:13717992-13718011 None:intergenic 30.0%
GGAATTGTAAATGTATTTGC+TGG - Chr4:13720187-13720206 MsG0480019042.01.T01:CDS 30.0%
GTATATAATCTAGTCGTGAT+AGG - Chr4:13719833-13719852 MsG0480019042.01.T01:CDS 30.0%
GTGGCATTTCATTAATTCAT+GGG - Chr4:13719478-13719497 MsG0480019042.01.T01:CDS 30.0%
TAATTTCAGACAAAAGACCT+TGG - Chr4:13717340-13717359 MsG0480019042.01.T01:CDS 30.0%
TACAATCCATTTAACTCCAT+GGG - Chr4:13719040-13719059 MsG0480019042.01.T01:intron 30.0%
TGAATTAATGAAATGCCACA+CGG + Chr4:13719477-13719496 None:intergenic 30.0%
TGATAACTTAAACAAGTGGA+AGG + Chr4:13718651-13718670 None:intergenic 30.0%
TGTCTTATGACACAAATATG+TGG + Chr4:13718730-13718749 None:intergenic 30.0%
TGTGGCATTTCATTAATTCA+TGG - Chr4:13719477-13719496 MsG0480019042.01.T01:CDS 30.0%
TTACCATAAACATCAAACCA+TGG + Chr4:13720115-13720134 None:intergenic 30.0%
TTGTCACATATAAGTGTCAT+TGG + Chr4:13717922-13717941 None:intergenic 30.0%
! AAACAGAATATAAGGTTGGT+AGG + Chr4:13718692-13718711 None:intergenic 30.0%
! GTATTTGCTGGAATAAAAGA+AGG - Chr4:13720199-13720218 MsG0480019042.01.T01:CDS 30.0%
! TCATAAATGAGACCTTTTTC+TGG + Chr4:13717706-13717725 None:intergenic 30.0%
! TCCACTTGTTTAAGTTATCA+CGG - Chr4:13718651-13718670 MsG0480019042.01.T01:intron 30.0%
! TGTTTGTTTCTTACTCTTCT+AGG + Chr4:13717842-13717861 None:intergenic 30.0%
! TTATGGTAATGATTTCGGAT+GGG - Chr4:13720126-13720145 MsG0480019042.01.T01:CDS 30.0%
! TTTATGGTAATGATTTCGGA+TGG - Chr4:13720125-13720144 MsG0480019042.01.T01:CDS 30.0%
!! AAGAAATCCAAGCTTTGTTA+GGG - Chr4:13720045-13720064 MsG0480019042.01.T01:CDS 30.0%
!! CAGGTTATTTTATACGTTGA+GGG + Chr4:13718951-13718970 None:intergenic 30.0%
!! CCACATATATAACTTGTTCT+AGG + Chr4:13718114-13718133 None:intergenic 30.0%
!! CGGATTCTAAAATACATCAA+AGG - Chr4:13717676-13717695 MsG0480019042.01.T01:CDS 30.0%
!! GAAATTAACTTGTTGATGAG+TGG + Chr4:13718246-13718265 None:intergenic 30.0%
!! GTTTGTTGATGTTTTGGATA+TGG - Chr4:13716956-13716975 MsG0480019042.01.T01:CDS 30.0%
!! TAAGAAATCCAAGCTTTGTT+AGG - Chr4:13720044-13720063 MsG0480019042.01.T01:CDS 30.0%
!! TCAGGTTATTTTATACGTTG+AGG + Chr4:13718952-13718971 None:intergenic 30.0%
!!! TTTGGTGTTTGTTGATGTTT+TGG - Chr4:13716950-13716969 MsG0480019042.01.T01:CDS 30.0%
!!! TTTTGTTGTTCCATAGTGAA+AGG + Chr4:13719599-13719618 None:intergenic 30.0%
AAAAACTCAACCCATCACAA+TGG + Chr4:13719625-13719644 None:intergenic 35.0%
AAACCATGGAGAACTACTAA+TGG + Chr4:13720101-13720120 None:intergenic 35.0%
AAGAGGTTGGAAAAAGGAAA+GGG + Chr4:13719168-13719187 None:intergenic 35.0%
AAGGGGAGAATCTACTTTAA+AGG + Chr4:13718570-13718589 None:intergenic 35.0%
AAGTACACAATACCTAGAAG+TGG + Chr4:13717800-13717819 None:intergenic 35.0%
AATACATGGATGTTGCTATC+CGG - Chr4:13717656-13717675 MsG0480019042.01.T01:CDS 35.0%
ATGAAGATAGAGGACATACT+CGG - Chr4:13717722-13717741 MsG0480019042.01.T01:intron 35.0%
ATGGGAAGTTGAATACCATT+TGG + Chr4:13719569-13719588 None:intergenic 35.0%
CAACAAAATAGCCATTGTGA+TGG - Chr4:13719611-13719630 MsG0480019042.01.T01:intron 35.0%
CAAGTTAATTGCTTCACACA+CGG - Chr4:13719988-13720007 MsG0480019042.01.T01:CDS 35.0%
CAATCTTCTCTTTGACAAAG+TGG + Chr4:13718014-13718033 None:intergenic 35.0%
CATACGATTTCCTTTCACTA+TGG - Chr4:13719586-13719605 MsG0480019042.01.T01:CDS 35.0%
CATAGTGAAAGGAAATCGTA+TGG + Chr4:13719588-13719607 None:intergenic 35.0%
CTTGCTTCAACCAACAAAAA+GGG - Chr4:13719077-13719096 MsG0480019042.01.T01:intron 35.0%
GACTCAATGGAATACTTTGA+CGG + Chr4:13717011-13717030 None:intergenic 35.0%
GATTATTACCAAGAGATCCA+AGG + Chr4:13717067-13717086 None:intergenic 35.0%
GGCAAGGAAAATTTAAGAGT+TGG + Chr4:13717633-13717652 None:intergenic 35.0%
GGCTCTATCAATACCAATAT+TGG - Chr4:13716768-13716787 MsG0480019042.01.T01:CDS 35.0%
GGTCTCATTTATGAAGATAG+AGG - Chr4:13717712-13717731 MsG0480019042.01.T01:intron 35.0%
GTCAAAGAGAAGATTGAATC+AGG - Chr4:13718018-13718037 MsG0480019042.01.T01:intron 35.0%
TACCAGACTATCCTTTGATT+GGG + Chr4:13717398-13717417 None:intergenic 35.0%
TACCTCCCTAAATCAGATAA+CGG + Chr4:13717535-13717554 None:intergenic 35.0%
TAGCAACATCCATGTATTCT+TGG + Chr4:13717654-13717673 None:intergenic 35.0%
TATCCATTAGTAGTTCTCCA+TGG - Chr4:13720095-13720114 MsG0480019042.01.T01:CDS 35.0%
TCAAACTTCTACCCAATCAT+GGG - Chr4:13717506-13717525 MsG0480019042.01.T01:CDS 35.0%
TCATGAATGGAAGAATACTC+GGG + Chr4:13716924-13716943 None:intergenic 35.0%
TCCGTGATAACTTAAACAAG+TGG + Chr4:13718655-13718674 None:intergenic 35.0%
TCTCCATGGTTTGATGTTTA+TGG - Chr4:13720109-13720128 MsG0480019042.01.T01:CDS 35.0%
TCTGTTATATGCAACAATGC+AGG - Chr4:13719236-13719255 MsG0480019042.01.T01:intron 35.0%
TGAAGAATCACTATGAGTCT+TGG - Chr4:13720020-13720039 MsG0480019042.01.T01:CDS 35.0%
TGTCAATTCAAATGACTAGC+TGG - Chr4:13718059-13718078 MsG0480019042.01.T01:intron 35.0%
TGTGTTCGAATCGATTACAA+TGG + Chr4:13717136-13717155 None:intergenic 35.0%
TTACCAGACTATCCTTTGAT+TGG + Chr4:13717399-13717418 None:intergenic 35.0%
TTGGGTAGAAGTTTGACATT+AGG + Chr4:13717502-13717521 None:intergenic 35.0%
! AAAAGTTGTTTCAACCTCTC+CGG + Chr4:13718208-13718227 None:intergenic 35.0%
! AAGCAACATCTAAAACTCAG+GGG - Chr4:13717234-13717253 MsG0480019042.01.T01:CDS 35.0%
! AGAATCTACTTTAAAGGCAG+AGG + Chr4:13718564-13718583 None:intergenic 35.0%
! ATAAAGAAGGCCCTTTTTGT+TGG + Chr4:13719090-13719109 None:intergenic 35.0%
! ATTGTTGGCTGTTCAAGTAA+CGG - Chr4:13719391-13719410 MsG0480019042.01.T01:CDS 35.0%
! CAAGCAACATCTAAAACTCA+GGG - Chr4:13717233-13717252 MsG0480019042.01.T01:CDS 35.0%
! CCGTTACCAGAAGATTATTT+TGG - Chr4:13719878-13719897 MsG0480019042.01.T01:CDS 35.0%
! CTAGTTGACGGTATTTTCAT+TGG - Chr4:13719416-13719435 MsG0480019042.01.T01:CDS 35.0%
! GTTTTTACAAAATCTCTGCG+AGG - Chr4:13718087-13718106 MsG0480019042.01.T01:intron 35.0%
! TATCTGATTTAGGGAGGTAT+AGG - Chr4:13717536-13717555 MsG0480019042.01.T01:CDS 35.0%
! TATGGTAATGATTTCGGATG+GGG - Chr4:13720127-13720146 MsG0480019042.01.T01:CDS 35.0%
! TATTTTATACGTTGAGGGCT+TGG + Chr4:13718946-13718965 None:intergenic 35.0%
! TCAAGCAACATCTAAAACTC+AGG - Chr4:13717232-13717251 MsG0480019042.01.T01:CDS 35.0%
! TCTAGGTATTGTGTACTTGT+TGG - Chr4:13717802-13717821 MsG0480019042.01.T01:intron 35.0%
! TGTGTTCCGTTATTTCAAGA+CGG + Chr4:13719196-13719215 None:intergenic 35.0%
! TTCTTGCTACTAGCTCTTTA+TGG - Chr4:13716891-13716910 MsG0480019042.01.T01:CDS 35.0%
! TTTTCCTTGCCAAGAATACA+TGG - Chr4:13717642-13717661 MsG0480019042.01.T01:CDS 35.0%
!! AAATAATCTTCTGGTAACGG+TGG + Chr4:13719878-13719897 None:intergenic 35.0%
!! AATATAAGGTTGGTAGGTTG+TGG + Chr4:13718686-13718705 None:intergenic 35.0%
!! AATGAAAGTTGGTGAGTTGT+TGG - Chr4:13719928-13719947 MsG0480019042.01.T01:CDS 35.0%
!! ACTTGTGTTGATGACATCTT+GGG - Chr4:13719290-13719309 MsG0480019042.01.T01:CDS 35.0%
!! AGAATATTGTTAAGGCATCG+CGG + Chr4:13718780-13718799 None:intergenic 35.0%
!! CATAAGAGTATCAACTAGCT+TGG + Chr4:13717476-13717495 None:intergenic 35.0%
!! GACGAAGGTGGATTATATAA+AGG - Chr4:13719950-13719969 MsG0480019042.01.T01:CDS 35.0%
!! TACTTGTGTTGATGACATCT+TGG - Chr4:13719289-13719308 MsG0480019042.01.T01:CDS 35.0%
!! TCTTACTCTTCTAGGATATC+AGG + Chr4:13717834-13717853 None:intergenic 35.0%
AACTCCACTTAGCGATTCAT+CGG - Chr4:13718455-13718474 MsG0480019042.01.T01:intron 40.0%
AAGCGCTATTAACTCACCTT+TGG - Chr4:13719768-13719787 MsG0480019042.01.T01:CDS 40.0%
AATCTAGTCGTGATAGGAGT+TGG - Chr4:13719839-13719858 MsG0480019042.01.T01:CDS 40.0%
ACAATTAGAGGAACGTAGAC+CGG + Chr4:13719317-13719336 None:intergenic 40.0%
ACATCCATGTATTCTTGGCA+AGG + Chr4:13717649-13717668 None:intergenic 40.0%
AGGAATTGCAGATGACTCAA+TGG + Chr4:13717024-13717043 None:intergenic 40.0%
ATCAAAGGGGATCCAGAAAA+AGG - Chr4:13717691-13717710 MsG0480019042.01.T01:CDS 40.0%
ATTTAACTCCATGGGATCTC+CGG - Chr4:13719048-13719067 MsG0480019042.01.T01:intron 40.0%
CAAACTTCTACCCAATCATG+GGG - Chr4:13717507-13717526 MsG0480019042.01.T01:CDS 40.0%
CAAGAGGTTGGAAAAAGGAA+AGG + Chr4:13719169-13719188 None:intergenic 40.0%
CACTCGAAGAAGGATAAATG+TGG + Chr4:13716988-13717007 None:intergenic 40.0%
CATTTCGTTTGCAGTTAGTG+TGG - Chr4:13717603-13717622 MsG0480019042.01.T01:CDS 40.0%
CGATTACAATGGTCACACTT+GGG + Chr4:13717125-13717144 None:intergenic 40.0%
CTAACTGCAAACGAAATGTC+CGG + Chr4:13717601-13717620 None:intergenic 40.0%
CTCATGAAAGACTGGATTTG+AGG + Chr4:13717965-13717984 None:intergenic 40.0%
CTTAAACAAGTGGAAGGGTT+TGG + Chr4:13718645-13718664 None:intergenic 40.0%
GAAATATCACGTGGTTGTTG+TGG - Chr4:13719503-13719522 MsG0480019042.01.T01:CDS 40.0%
GAAGTGGATCGTCTATCAAT+AGG + Chr4:13717784-13717803 None:intergenic 40.0%
GACACAAATATGTGGTTGCT+AGG + Chr4:13718722-13718741 None:intergenic 40.0%
GATTAAGGTAGCCCAATCAA+AGG - Chr4:13717384-13717403 MsG0480019042.01.T01:CDS 40.0%
GCTTGCTTCAACCAACAAAA+AGG - Chr4:13719076-13719095 MsG0480019042.01.T01:intron 40.0%
GTCAAACTTCTACCCAATCA+TGG - Chr4:13717505-13717524 MsG0480019042.01.T01:CDS 40.0%
GTGGGTCAAATTGTTTGCAA+CGG + Chr4:13719805-13719824 None:intergenic 40.0%
GTTACTTGAACAGCCAACAA+TGG + Chr4:13719392-13719411 None:intergenic 40.0%
GTTGCTTGAACATTGTCAGA+AGG + Chr4:13717221-13717240 None:intergenic 40.0%
TCGATTACAATGGTCACACT+TGG + Chr4:13717126-13717145 None:intergenic 40.0%
TCTCTCCACTGATACAATCA+AGG - Chr4:13718998-13719017 MsG0480019042.01.T01:intron 40.0%
TGGGTCAAATTGTTTGCAAC+GGG + Chr4:13719804-13719823 None:intergenic 40.0%
TGTCAGAGTAATCCAAATCC+TGG - Chr4:13717290-13717309 MsG0480019042.01.T01:CDS 40.0%
TTCAACCATGTTGTCGTTGA+CGG - Chr4:13719446-13719465 MsG0480019042.01.T01:CDS 40.0%
TTGATAGACGATCCACTTCT+AGG - Chr4:13717785-13717804 MsG0480019042.01.T01:intron 40.0%
TTGGTTGAAGCAGTTACTCA+GGG - Chr4:13717873-13717892 MsG0480019042.01.T01:intron 40.0%
TTGTATCAGTGGAGAGAACT+CGG + Chr4:13718995-13719014 None:intergenic 40.0%
TTTGGTTGAAGCAGTTACTC+AGG - Chr4:13717872-13717891 MsG0480019042.01.T01:intron 40.0%
! AGGTATTGTGTACTTGTTGG+AGG - Chr4:13717805-13717824 MsG0480019042.01.T01:intron 40.0%
! ATTTGAGGCAATATGCAACG+CGG + Chr4:13717950-13717969 None:intergenic 40.0%
! GCTACGAAGATTTTGTCTGA+TGG - Chr4:13717267-13717286 MsG0480019042.01.T01:CDS 40.0%
! TCCTTTTTCCAACCTCTTGT+CGG - Chr4:13719170-13719189 MsG0480019042.01.T01:intron 40.0%
! TTTAGGGAGGTATAGGAGAT+TGG - Chr4:13717543-13717562 MsG0480019042.01.T01:CDS 40.0%
!! GAGTTTTTCAGCGTCTAATG+AGG - Chr4:13719637-13719656 MsG0480019042.01.T01:intron 40.0%
AAACCAACGCTCTAGTGTTG+GGG + Chr4:13719546-13719565 None:intergenic 45.0%
AAACCTATAGCAGTTCGCAG+TGG - Chr4:13720151-13720170 MsG0480019042.01.T01:CDS 45.0%
AAGGGCAACTGTATCACTTG+GGG + Chr4:13717048-13717067 None:intergenic 45.0%
AATAGGTGAGCCTGCTCAAT+CGG + Chr4:13717767-13717786 None:intergenic 45.0%
ACTTTCCGTCAACGACAACA+TGG + Chr4:13719454-13719473 None:intergenic 45.0%
AGCCCAATCAAAGGATAGTC+TGG - Chr4:13717393-13717412 MsG0480019042.01.T01:CDS 45.0%
AGCCGTTATCTGATTTAGGG+AGG - Chr4:13717530-13717549 MsG0480019042.01.T01:CDS 45.0%
AGGCACGTCAAAACCATTGT+TGG - Chr4:13719376-13719395 MsG0480019042.01.T01:CDS 45.0%
AGTCGTTGTTGGAAGTTGCA+TGG - Chr4:13717161-13717180 MsG0480019042.01.T01:CDS 45.0%
CAAGGGCAACTGTATCACTT+GGG + Chr4:13717049-13717068 None:intergenic 45.0%
CTAGCAACCCTAACAAAGCT+TGG + Chr4:13720055-13720074 None:intergenic 45.0%
GAAACCAACGCTCTAGTGTT+GGG + Chr4:13719547-13719566 None:intergenic 45.0%
GAAGCAGTAGAACCAGGATT+TGG + Chr4:13717305-13717324 None:intergenic 45.0%
GCTTGAACATTGTCAGAAGG+AGG + Chr4:13717218-13717237 None:intergenic 45.0%
GGAGATCCCATGGAGTTAAA+TGG + Chr4:13719049-13719068 None:intergenic 45.0%
GGGAGCCGTTATCTGATTTA+GGG - Chr4:13717527-13717546 MsG0480019042.01.T01:CDS 45.0%
GTCAACGACAACATGGTTGA+AGG + Chr4:13719447-13719466 None:intergenic 45.0%
TAATCCTGCTGAACAGGTGA+AGG - Chr4:13716845-13716864 MsG0480019042.01.T01:CDS 45.0%
TATCCACTGCGAACTGCTAT+AGG + Chr4:13720157-13720176 None:intergenic 45.0%
TGAATGGAAGAATACTCGGG+AGG + Chr4:13716921-13716940 None:intergenic 45.0%
TGGTAGCAACCCAAATCCAA+CGG - Chr4:13719120-13719139 MsG0480019042.01.T01:intron 45.0%
TGGTGCCTTGATTGTATCAG+TGG + Chr4:13719006-13719025 None:intergenic 45.0%
TGGTTGAAGCAAGCAGAAAC+CGG + Chr4:13719070-13719089 None:intergenic 45.0%
TGTCGGCCGTCTTGAAATAA+CGG - Chr4:13719187-13719206 MsG0480019042.01.T01:intron 45.0%
TTACCTTACAGTCACTCGTC+CGG - Chr4:13717579-13717598 MsG0480019042.01.T01:CDS 45.0%
TTATACGTTGAGGGCTTGGA+AGG + Chr4:13718942-13718961 None:intergenic 45.0%
TTGGAAAAAGGAAAGGGCAG+AGG + Chr4:13719162-13719181 None:intergenic 45.0%
TTGGTCGTCTCATGAAAGAC+TGG + Chr4:13717973-13717992 None:intergenic 45.0%
! AGGTTCTCGTTGAAGCATCT+TGG + Chr4:13718496-13718515 None:intergenic 45.0%
! ATCTAAAACTCAGGGGTCTC+AGG - Chr4:13717241-13717260 MsG0480019042.01.T01:CDS 45.0%
! CAAGTAACGGAGCTAGTTGA+CGG - Chr4:13719404-13719423 MsG0480019042.01.T01:CDS 45.0%
! GGAGGTATAGGAGATTGGTT+GGG - Chr4:13717548-13717567 MsG0480019042.01.T01:CDS 45.0%
! TCATGGGCTGAAATATCACG+TGG - Chr4:13719494-13719513 MsG0480019042.01.T01:CDS 45.0%
!! CTAGAGCGTTGGTTTCCAAA+TGG - Chr4:13719551-13719570 MsG0480019042.01.T01:CDS 45.0%
!! TGTTGATGACATCTTGGGAC+CGG - Chr4:13719295-13719314 MsG0480019042.01.T01:CDS 45.0%
!!! TTATTATCTTTTAAATATTT+GGG + Chr4:13718437-13718456 None:intergenic 5.0%
AAGTATTCTCTGCTGCAGCG+TGG + Chr4:13719274-13719293 None:intergenic 50.0%
AATCAGAACCTCTCTCGCAG+AGG - Chr4:13717083-13717102 MsG0480019042.01.T01:CDS 50.0%
ACAGTTGCCCTTGGATCTCT+TGG - Chr4:13717056-13717075 MsG0480019042.01.T01:CDS 50.0%
ACCTGGGCTGTATTCACTTG+AGG + Chr4:13717191-13717210 None:intergenic 50.0%
ACTGCTTCTGTTGCACACAC+TGG - Chr4:13717317-13717336 MsG0480019042.01.T01:CDS 50.0%
ACTTTGACGGCACTCGAAGA+AGG + Chr4:13716998-13717017 None:intergenic 50.0%
AGTGTCTCAGCCGTTGGATT+TGG + Chr4:13719133-13719152 None:intergenic 50.0%
ATTTCAAGACGGCCGACAAG+AGG + Chr4:13719185-13719204 None:intergenic 50.0%
CACCTGTTCAGCAGGATTAC+TGG + Chr4:13716844-13716863 None:intergenic 50.0%
CCAAGGGCAACTGTATCACT+TGG + Chr4:13717050-13717069 None:intergenic 50.0%
CCAAGTGATACAGTTGCCCT+TGG - Chr4:13717047-13717066 MsG0480019042.01.T01:CDS 50.0%
CCACCGGATGGTGATAAAGA+AGG + Chr4:13719103-13719122 None:intergenic 50.0%
CCTTCTTTATCACCATCCGG+TGG - Chr4:13719100-13719119 MsG0480019042.01.T01:intron 50.0%
CTGTTCAGCAGGATTACTGG+CGG + Chr4:13716841-13716860 None:intergenic 50.0%
GCAACAGAAGCAGTAGAACC+AGG + Chr4:13717311-13717330 None:intergenic 50.0%
GCCGACAAGAGGTTGGAAAA+AGG + Chr4:13719174-13719193 None:intergenic 50.0%
GGAAACCAACGCTCTAGTGT+TGG + Chr4:13719548-13719567 None:intergenic 50.0%
GGGCCTTCTTTATCACCATC+CGG - Chr4:13719097-13719116 MsG0480019042.01.T01:intron 50.0%
GGGGAGCCGTTATCTGATTT+AGG - Chr4:13717526-13717545 MsG0480019042.01.T01:CDS 50.0%
GTCAGAAGGAGGATCTACCT+GGG + Chr4:13717207-13717226 None:intergenic 50.0%
GTCTCCGATGAATCGCTAAG+TGG + Chr4:13718462-13718481 None:intergenic 50.0%
GTGTCTCAGCCGTTGGATTT+GGG + Chr4:13719132-13719151 None:intergenic 50.0%
TCGTGATAGGAGTTGGACCA+AGG - Chr4:13719846-13719865 MsG0480019042.01.T01:CDS 50.0%
TGTCAGAAGGAGGATCTACC+TGG + Chr4:13717208-13717227 None:intergenic 50.0%
! AACCAACGCTCTAGTGTTGG+GGG + Chr4:13719545-13719564 None:intergenic 50.0%
! AACGGGTGACAAAGCACCAA+AGG + Chr4:13719787-13719806 None:intergenic 50.0%
! AGATAACGGCTCCCCATGAT+TGG + Chr4:13717521-13717540 None:intergenic 50.0%
! GATAACGGCTCCCCATGATT+GGG + Chr4:13717520-13717539 None:intergenic 50.0%
! GGGAGGTATAGGAGATTGGT+TGG - Chr4:13717547-13717566 MsG0480019042.01.T01:CDS 50.0%
! GGTAACGGTGGAACAAACCT+TGG + Chr4:13719866-13719885 None:intergenic 50.0%
! GTTGGTGAGTTGTTGGACGA+AGG - Chr4:13719935-13719954 MsG0480019042.01.T01:CDS 50.0%
! TAGTCAGATGCCGATTGAGC+AGG - Chr4:13717754-13717773 MsG0480019042.01.T01:intron 50.0%
!! AAGGCATCGCGGCATAAACA+TGG + Chr4:13718769-13718788 None:intergenic 50.0%
!! ATAGAGAGTGTCTCAGCCGT+TGG + Chr4:13719139-13719158 None:intergenic 50.0%
!! TGGATTTGGGTTGCTACCAC+CGG + Chr4:13719119-13719138 None:intergenic 50.0%
AACCCCCAACACTAGAGCGT+TGG - Chr4:13719540-13719559 MsG0480019042.01.T01:CDS 55.0%
AGCAGAAACCGGAGATCCCA+TGG + Chr4:13719059-13719078 None:intergenic 55.0%
AGCTCCTTCACCTGTTCAGC+AGG + Chr4:13716852-13716871 None:intergenic 55.0%
CGCCAGTAATCCTGCTGAAC+AGG - Chr4:13716839-13716858 MsG0480019042.01.T01:CDS 55.0%
GCAACTGTATCACTTGGGGC+AGG + Chr4:13717044-13717063 None:intergenic 55.0%
GCCTCAAGTGAATACAGCCC+AGG - Chr4:13717187-13717206 MsG0480019042.01.T01:CDS 55.0%
GGTGAGTTGTTGGACGAAGG+TGG - Chr4:13719938-13719957 MsG0480019042.01.T01:CDS 55.0%
GTCACACTTGGGACGAGACT+TGG + Chr4:13717114-13717133 None:intergenic 55.0%
TCGTTGACGGAAAGTCCGTG+TGG - Chr4:13719459-13719478 MsG0480019042.01.T01:CDS 55.0%
TGGATGAACCTCTGCGAGAG+AGG + Chr4:13717094-13717113 None:intergenic 55.0%
TGTCCGGACGAGTGACTGTA+AGG + Chr4:13717585-13717604 None:intergenic 55.0%
! ACGCTCTAGTGTTGGGGGTT+TGG + Chr4:13719540-13719559 None:intergenic 55.0%
!! TTTGGGTTGCTACCACCGGA+TGG + Chr4:13719115-13719134 None:intergenic 55.0%
CAAGACGGCCGACAAGAGGT+TGG + Chr4:13719181-13719200 None:intergenic 60.0%
CAGGATTACTGGCGGCGAGA+GGG + Chr4:13716833-13716852 None:intergenic 60.0%
GCAGGATTACTGGCGGCGAG+AGG + Chr4:13716834-13716853 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 13716735 13720237 13716735 ID=MsG0480019042.01;Name=MsG0480019042.01
Chr4 mRNA 13716735 13720237 13716735 ID=MsG0480019042.01.T01;Parent=MsG0480019042.01;Name=MsG0480019042.01.T01;_AED=0.31;_eAED=0.31;_QI=0|0|0|1|1|1|3|0|623
Chr4 exon 13719710 13720237 13719710 ID=MsG0480019042.01.T01:exon:8554;Parent=MsG0480019042.01.T01
Chr4 exon 13719260 13719623 13719260 ID=MsG0480019042.01.T01:exon:8553;Parent=MsG0480019042.01.T01
Chr4 exon 13716735 13717714 13716735 ID=MsG0480019042.01.T01:exon:8552;Parent=MsG0480019042.01.T01
Chr4 CDS 13719710 13720237 13719710 ID=MsG0480019042.01.T01:cds;Parent=MsG0480019042.01.T01
Chr4 CDS 13719260 13719623 13719260 ID=MsG0480019042.01.T01:cds;Parent=MsG0480019042.01.T01
Chr4 CDS 13716735 13717714 13716735 ID=MsG0480019042.01.T01:cds;Parent=MsG0480019042.01.T01
Gene Sequence

>MsG0480019042.01.T01

ATGATGAGCATCATTCATTCAAAGACGATAGATGGCTCTATCAATACCAATATTGGTAATTTTCACACTACACTTAATGAATTTAATGAGCTTCTCCCTCTCGCCGCCAGTAATCCTGCTGAACAGGTGAAGGAGCTTAAGCAACACATCACATTCTTCTTGCTACTAGCTCTTTATGGCTTACCTCCCGAGTATTCTTCCATTCATGATCAAATTTTGGTGTTTGTTGATGTTTTGGATATGGATATTGCCACATTTATCCTTCTTCGAGTGCCGTCAAAGTATTCCATTGAGTCATCTGCAATTCCTGCCCCAAGTGATACAGTTGCCCTTGGATCTCTTGGTAATAATCAGAACCTCTCTCGCAGAGGTTCATCCAAGTCTCGTCCCAAGTGTGACCATTGTAATCGATTCGAACACAAAATTAGTCGTTGTTGGAAGTTGCATGGTAAGCCTCAAGTGAATACAGCCCAGGTAGATCCTCCTTCTGACAATGTTCAAGCAACATCTAAAACTCAGGGGTCTCAGACAAAAGACCTTGGTAAACTTTGTTATATTTTGGGGATTAAGGTAGCCCAATCAAAGGATAGTCTGGTAATATCACAACGAAAATATGCTATGGATATTCTTGAAGAAACAAGTCTTTTGAACGCCAAGCTAGTTGATACTCTTATGCATCCTAATGTCAAACTTCTACCCAATCATGGGGAGCCGTTATCTGATTTAGGGAGGTATAGGAGATTGGTTGGGAAATTGAATTACCTTACAGTCACTCGTCCGGACATTTCGTTTGCAGTTAGTGTGGTAAGCCAACTCTTAAATTTTCCTTGCCAAGAATACATGGATGTTGCTATCCGGATTCTAAAATACATCAAAGGGGATCCAGAAAAAGGTGTACTCTTTATCCACGCTGCAGCAGAGAATACTTGTGTTGATGACATCTTGGGACCGGTCTACGTTCCTCTAATTGTCGATTCATTTTTTGCCTTTATCGGAGATAAAAACTATGAAGGCACGTCAAAACCATTGTTGGCTGTTCAAGTAACGGAGCTAGTTGACGGTATTTTCATTGGTTGCTCCTTCAACCATGTTGTCGTTGACGGAAAGTCCGTGTGGCATTTCATTAATTCATGGGCTGAAATATCACGTGGTTGTTGTGGTGATCAAATATCCAAACCCCCAACACTAGAGCGTTGGTTTCCAAATGGTATTCAACTTCCCATACGATTTCCTTTCACTATGGAACAACAAAATAGCCATTGTGATGGGTTGAGTTTTTCAGCGTCTAATGAGGAAAAACTTTGTTTATCAAATAGGTTATTTCATTTCACAAAGGAGAAAATCATTCAACTGAAATCGAAAATCAATGAAGAGGTTAGTACAATCAAAATATCATCTCTACAAGCGCTATTAACTCACCTTTGGTGCTTTGTCACCCGTTGCAAACAATTTGACCCACAAGAAGAAGTATATAATCTAGTCGTGATAGGAGTTGGACCAAGGTTTGTTCCACCGTTACCAGAAGATTATTTTGGAAACTCGATTATAAGTTGTATAGTCAAAATGAAAGTTGGTGAGTTGTTGGACGAAGGTGGATTATATAAAGGTGCTTGTGAGATGAACAAGTTAATTGCTTCACACACGGATGAGAAGTTGAAGAATCACTATGAGTCTTGGCTAAGAAATCCAAGCTTTGTTAGGGTTGCTAGCATGTCCAATAATAATTTCTTATCCATTAGTAGTTCTCCATGGTTTGATGTTTATGGTAATGATTTCGGATGGGGAAAACCTATAGCAGTTCGCAGTGGATATAAAATAAATGGAATTGTAAATGTATTTGCTGGAATAAAAGAAGGTAGTATTGACCTTTAA
Protein sequence

>MsG0480019042.01.T01

MMSIIHSKTIDGSINTNIGNFHTTLNEFNELLPLAASNPAEQVKELKQHITFFLLLALYGLPPEYSSIHDQILVFVDVLDMDIATFILLRVPSKYSIESSAIPAPSDTVALGSLGNNQNLSRRGSSKSRPKCDHCNRFEHKISRCWKLHGKPQVNTAQVDPPSDNVQATSKTQGSQTKDLGKLCYILGIKVAQSKDSLVISQRKYAMDILEETSLLNAKLVDTLMHPNVKLLPNHGEPLSDLGRYRRLVGKLNYLTVTRPDISFAVSVVSQLLNFPCQEYMDVAIRILKYIKGDPEKGVLFIHAAAENTCVDDILGPVYVPLIVDSFFAFIGDKNYEGTSKPLLAVQVTELVDGIFIGCSFNHVVVDGKSVWHFINSWAEISRGCCGDQISKPPTLERWFPNGIQLPIRFPFTMEQQNSHCDGLSFSASNEEKLCLSNRLFHFTKEKIIQLKSKINEEVSTIKISSLQALLTHLWCFVTRCKQFDPQEEVYNLVVIGVGPRFVPPLPEDYFGNSIISCIVKMKVGELLDEGGLYKGACEMNKLIASHTDEKLKNHYESWLRNPSFVRVASMSNNNFLSISSSPWFDVYGNDFGWGKPIAVRSGYKINGIVNVFAGIKEGSIDL*