Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780040308.01.T01 | XP_013449529.1 | 96.19 | 315 | 11 | 1 | 1 | 314 | 1 | 315 | 0 | 623 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780040308.01.T01 | Q9FYE1 | 62.08 | 327 | 95 | 7 | 6 | 314 | 9 | 324 | 5.98E-140 | 401 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780040308.01.T01 | Q2HUG6 | 96.190 | 315 | 11 | 1 | 1 | 314 | 1 | 315 | 0.0 | 623 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048058.01 | MsG0780040308.01 | 0.805178 | 1.513457e-49 | 7.953633e-47 |
| MsG0180000001.01 | MsG0780040308.01 | 0.806871 | 6.664042e-50 | 3.657527e-47 |
| MsG0180000024.01 | MsG0780040308.01 | 0.814641 | 1.389018e-51 | 9.371675e-49 |
| MsG0180001294.01 | MsG0780040308.01 | 0.808893 | 2.476331e-50 | 1.432814e-47 |
| MsG0180001531.01 | MsG0780040308.01 | 0.801610 | 8.300894e-49 | 3.981321e-46 |
| MsG0180003337.01 | MsG0780040308.01 | 0.803237 | 3.836804e-49 | 1.918106e-46 |
| MsG0180003744.01 | MsG0780040308.01 | 0.813029 | 3.147642e-51 | 2.032818e-48 |
| MsG0180003948.01 | MsG0780040308.01 | 0.811873 | 5.630897e-51 | 3.525784e-48 |
| MsG0180004645.01 | MsG0780040308.01 | 0.800109 | 1.681844e-48 | 7.765786e-46 |
| MsG0180005765.01 | MsG0780040308.01 | 0.801596 | 8.355404e-49 | 4.005979e-46 |
| MsG0180005813.01 | MsG0780040308.01 | 0.818469 | 1.929054e-52 | 1.445302e-49 |
| MsG0780040308.01 | MsG0780040312.01 | 0.808604 | 2.853730e-50 | 1.638736e-47 |
| MsG0780040308.01 | MsG0780040411.01 | 0.819101 | 1.385898e-52 | 1.056581e-49 |
| MsG0780040308.01 | MsG0780040691.01 | 0.801758 | 7.741596e-49 | 3.726977e-46 |
| MsG0780040308.01 | MsG0780040845.01 | 0.803393 | 3.562054e-49 | 1.787932e-46 |
| MsG0780040308.01 | MsG0780041370.01 | 0.805751 | 1.147549e-49 | 6.120621e-47 |
| MsG0780040308.01 | MsG0780041469.01 | 0.807497 | 4.910344e-50 | 2.739291e-47 |
| MsG0780040308.01 | MsG0880042329.01 | 0.804708 | 1.897098e-49 | 9.850117e-47 |
| MsG0780040308.01 | MsG0880042547.01 | 0.827705 | 1.350168e-54 | 1.313548e-51 |
| MsG0780040308.01 | MsG0880042552.01 | 0.856769 | 2.570985e-62 | 6.202844e-59 |
| MsG0780040308.01 | MsG0880044075.01 | 0.815621 | 8.414940e-52 | 5.831512e-49 |
| MsG0780040308.01 | MsG0880044546.01 | 0.802716 | 4.915740e-49 | 2.425186e-46 |
| MsG0780040308.01 | MsG0880044917.01 | 0.805868 | 1.084636e-49 | 5.802231e-47 |
| MsG0780040308.01 | MsG0880046047.01 | 0.809816 | 1.569268e-50 | 9.306607e-48 |
| MsG0780040308.01 | MsG0880046317.01 | 0.835946 | 1.248010e-56 | 1.549469e-53 |
| MsG0780040308.01 | MsG0880046762.01 | 0.812990 | 3.209641e-51 | 2.070686e-48 |
| MsG0280010735.01 | MsG0780040308.01 | 0.828218 | 1.016126e-54 | 1.003541e-51 |
| MsG0280010957.01 | MsG0780040308.01 | 0.856156 | 3.891690e-62 | 9.201397e-59 |
| MsG0280011293.01 | MsG0780040308.01 | 0.803072 | 4.149959e-49 | 2.065842e-46 |
| MsG0380012124.01 | MsG0780040308.01 | 0.813190 | 2.901957e-51 | 1.882224e-48 |
| MsG0480018462.01 | MsG0780040308.01 | 0.800275 | 1.555597e-48 | 7.213386e-46 |
| MsG0480019170.01 | MsG0780040308.01 | 0.805928 | 1.053177e-49 | 5.642602e-47 |
| MsG0480021298.01 | MsG0780040308.01 | 0.838673 | 2.500385e-57 | 3.373128e-54 |
| MsG0480022717.01 | MsG0780040308.01 | 0.821962 | 3.054688e-53 | 2.522146e-50 |
| MsG0480022719.01 | MsG0780040308.01 | 0.827753 | 1.314744e-54 | 1.280867e-51 |
| MsG0580024035.01 | MsG0780040308.01 | 0.808171 | 3.530414e-50 | 2.004618e-47 |
| MsG0580025989.01 | MsG0780040308.01 | 0.800266 | 1.562539e-48 | 7.243993e-46 |
| MsG0380015564.01 | MsG0780040308.01 | 0.802042 | 6.767199e-49 | 3.281591e-46 |
| MsG0380015731.01 | MsG0780040308.01 | 0.824075 | 9.822107e-54 | 8.610565e-51 |
| MsG0380017410.01 | MsG0780040308.01 | 0.821716 | 3.483327e-53 | 2.856152e-50 |
| MsG0480018256.01 | MsG0780040308.01 | 0.806285 | 8.860250e-50 | 4.790432e-47 |
| MsG0680030436.01 | MsG0780040308.01 | 0.829792 | 4.222925e-55 | 4.367510e-52 |
| MsG0680030684.01 | MsG0780040308.01 | 0.804140 | 2.492538e-49 | 1.275361e-46 |
| MsG0280006630.01 | MsG0780040308.01 | 0.893962 | 3.855502e-75 | 3.756577e-71 |
| MsG0280006665.01 | MsG0780040308.01 | 0.892974 | 9.675769e-75 | 9.045081e-71 |
| MsG0280007048.01 | MsG0780040308.01 | 0.800642 | 1.309718e-48 | 6.130075e-46 |
| MsG0280007140.01 | MsG0780040308.01 | 0.823458 | 1.370413e-53 | 1.180597e-50 |
| MsG0280007500.01 | MsG0780040308.01 | 0.854903 | 9.027204e-62 | 2.047169e-58 |
| MsG0280007564.01 | MsG0780040308.01 | 0.805991 | 1.021680e-49 | 5.482795e-47 |
| MsG0280007790.01 | MsG0780040308.01 | 0.819221 | 1.301356e-52 | 9.953767e-50 |
| MsG0280008286.01 | MsG0780040308.01 | 0.815238 | 1.024014e-51 | 7.021023e-49 |
| MsG0280008909.01 | MsG0780040308.01 | 0.803024 | 4.246175e-49 | 2.111156e-46 |
| MsG0280010389.01 | MsG0780040308.01 | 0.817382 | 3.394158e-52 | 2.468159e-49 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780040308.01.T01 | MTR_7g088035 | 96.190 | 315 | 11 | 1 | 1 | 314 | 1 | 315 | 0.0 | 623 |
| MsG0780040308.01.T01 | MTR_8g447080 | 53.846 | 156 | 69 | 2 | 7 | 161 | 3 | 156 | 2.02e-49 | 170 |
| MsG0780040308.01.T01 | MTR_8g447080 | 50.602 | 83 | 41 | 0 | 230 | 312 | 329 | 411 | 4.33e-22 | 95.9 |
| MsG0780040308.01.T01 | MTR_2g063570 | 52.564 | 156 | 71 | 2 | 7 | 161 | 6 | 159 | 2.30e-49 | 169 |
| MsG0780040308.01.T01 | MTR_2g063570 | 56.098 | 82 | 36 | 0 | 231 | 312 | 319 | 400 | 9.20e-24 | 100 |
| MsG0780040308.01.T01 | MTR_0340s0030 | 25.538 | 325 | 172 | 9 | 6 | 312 | 3 | 275 | 1.31e-23 | 98.2 |
| MsG0780040308.01.T01 | MTR_7g451400 | 32.203 | 177 | 111 | 3 | 6 | 178 | 73 | 244 | 7.48e-21 | 92.0 |
| MsG0780040308.01.T01 | MTR_2g008970 | 35.526 | 152 | 92 | 3 | 5 | 151 | 87 | 237 | 2.16e-20 | 90.1 |
| MsG0780040308.01.T01 | MTR_2g008970 | 35.526 | 152 | 92 | 3 | 5 | 151 | 87 | 237 | 2.59e-20 | 90.5 |
| MsG0780040308.01.T01 | MTR_4g094202 | 36.667 | 150 | 89 | 3 | 7 | 151 | 101 | 249 | 9.60e-20 | 89.0 |
| MsG0780040308.01.T01 | MTR_4g094210 | 36.424 | 151 | 90 | 4 | 5 | 151 | 115 | 263 | 6.20e-19 | 86.7 |
| MsG0780040308.01.T01 | MTR_2g008990 | 36.538 | 156 | 84 | 6 | 5 | 151 | 115 | 264 | 1.02e-18 | 86.3 |
| MsG0780040308.01.T01 | MTR_2g008990 | 36.538 | 156 | 84 | 6 | 5 | 151 | 115 | 264 | 1.06e-18 | 86.3 |
| MsG0780040308.01.T01 | MTR_2g008990 | 36.538 | 156 | 84 | 6 | 5 | 151 | 115 | 264 | 1.34e-18 | 85.9 |
| MsG0780040308.01.T01 | MTR_2g008980 | 33.333 | 153 | 94 | 5 | 5 | 151 | 109 | 259 | 1.37e-17 | 81.6 |
| MsG0780040308.01.T01 | MTR_2g008980 | 33.333 | 153 | 94 | 5 | 5 | 151 | 109 | 259 | 2.59e-17 | 82.0 |
| MsG0780040308.01.T01 | MTR_2g008980 | 33.333 | 153 | 94 | 5 | 5 | 151 | 109 | 259 | 2.70e-17 | 81.6 |
| MsG0780040308.01.T01 | MTR_2g008980 | 33.333 | 153 | 94 | 5 | 5 | 151 | 109 | 259 | 2.75e-17 | 82.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780040308.01.T01 | AT5G04200 | 62.080 | 327 | 95 | 7 | 6 | 314 | 9 | 324 | 6.09e-141 | 401 |
| MsG0780040308.01.T01 | AT1G79320 | 39.452 | 365 | 158 | 7 | 9 | 312 | 5 | 367 | 3.53e-79 | 245 |
| MsG0780040308.01.T01 | AT1G79330 | 37.897 | 409 | 149 | 9 | 7 | 312 | 3 | 409 | 1.21e-74 | 235 |
| MsG0780040308.01.T01 | AT1G16420 | 37.270 | 381 | 156 | 12 | 9 | 312 | 5 | 379 | 1.48e-66 | 213 |
| MsG0780040308.01.T01 | AT1G79340 | 56.410 | 156 | 65 | 2 | 7 | 161 | 3 | 156 | 4.07e-53 | 179 |
| MsG0780040308.01.T01 | AT1G79340 | 53.012 | 83 | 39 | 0 | 230 | 312 | 335 | 417 | 5.57e-23 | 98.6 |
| MsG0780040308.01.T01 | AT1G79310 | 51.497 | 167 | 78 | 2 | 7 | 172 | 3 | 167 | 2.83e-48 | 166 |
| MsG0780040308.01.T01 | AT1G79310 | 52.874 | 87 | 36 | 2 | 228 | 312 | 319 | 402 | 2.10e-21 | 94.0 |
| MsG0780040308.01.T01 | AT4G25110 | 35.028 | 177 | 105 | 3 | 6 | 178 | 115 | 285 | 2.81e-22 | 96.7 |
| MsG0780040308.01.T01 | AT4G25110 | 35.028 | 177 | 104 | 3 | 6 | 178 | 115 | 284 | 5.62e-22 | 95.9 |
| MsG0780040308.01.T01 | AT1G02170 | 32.768 | 177 | 109 | 4 | 6 | 178 | 79 | 249 | 1.54e-21 | 94.0 |
| MsG0780040308.01.T01 | AT5G64240 | 33.908 | 174 | 105 | 3 | 6 | 175 | 89 | 256 | 6.26e-20 | 88.6 |
| MsG0780040308.01.T01 | AT5G64240 | 33.908 | 174 | 105 | 3 | 6 | 175 | 89 | 256 | 9.85e-20 | 89.0 |
Find 59 sgRNAs with CRISPR-Local
Find 100 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCTTTCCATTACTCATATT+TGG | 0.091095 | 7:+75759550 | None:intergenic |
| CGCAATTCATTGGGAGTGTT+TGG | 0.257412 | 7:+75760977 | None:intergenic |
| AAACAAGAGGCTAGCAGTTT+TGG | 0.263316 | 7:-75761014 | MsG0780040308.01.T01:CDS |
| GACACATTGGTGAAGCGTTT+TGG | 0.263796 | 7:-75760923 | MsG0780040308.01.T01:CDS |
| CGGATGCAAGTTTGAGGTTT+CGG | 0.277127 | 7:-75759672 | MsG0780040308.01.T01:CDS |
| ATTGTTAGGCTTGCTCCTTT+TGG | 0.331058 | 7:+75759904 | None:intergenic |
| TATGCAACCACGCAATTCAT+TGG | 0.344858 | 7:+75760967 | None:intergenic |
| CTTCACCAATGTGTCCTTCA+TGG | 0.361633 | 7:+75760931 | None:intergenic |
| AAGGCTAGGGATGTTCTAAA+AGG | 0.385430 | 7:-75759448 | MsG0780040308.01.T01:CDS |
| GAGTCATAGGGAATAGTCTT+TGG | 0.385589 | 7:+75759772 | None:intergenic |
| ACCATATAGATTTGGACTTC+AGG | 0.392417 | 7:-75759945 | MsG0780040308.01.T01:intron |
| GTGTTGAAATATTGAGTCAT+AGG | 0.394451 | 7:+75759759 | None:intergenic |
| ATGAGTAATGGAAAGGCTTA+TGG | 0.405309 | 7:-75759544 | MsG0780040308.01.T01:CDS |
| ATCAGTGAGAAGCTGAATAT+TGG | 0.409562 | 7:+75760889 | None:intergenic |
| AAAAGGATGTCCATGTATCT+TGG | 0.422231 | 7:+75760733 | None:intergenic |
| TGCTGTTCAGATTGTGTTGA+AGG | 0.439367 | 7:-75759509 | MsG0780040308.01.T01:CDS |
| TAATAGACAGGTTGTGGTAA+AGG | 0.441352 | 7:-75759467 | MsG0780040308.01.T01:CDS |
| ATGCAACCACGCAATTCATT+GGG | 0.443326 | 7:+75760968 | None:intergenic |
| ATTATAGTGGACATGGAACT+AGG | 0.445716 | 7:-75760763 | MsG0780040308.01.T01:CDS |
| TAAACAAGCATTATCAAGAA+TGG | 0.451128 | 7:-75760822 | MsG0780040308.01.T01:CDS |
| TTGTGTTGAAGGAAAATAAA+GGG | 0.463668 | 7:-75759498 | MsG0780040308.01.T01:CDS |
| AGGGAAATTAAGTAATAGAC+AGG | 0.472697 | 7:-75759479 | MsG0780040308.01.T01:CDS |
| ATGGTTGATCAAGCTGAAGC+AGG | 0.476621 | 7:-75760803 | MsG0780040308.01.T01:CDS |
| ATTAAGTAATAGACAGGTTG+TGG | 0.479472 | 7:-75759473 | MsG0780040308.01.T01:CDS |
| ATTGTGTTGAAGGAAAATAA+AGG | 0.486485 | 7:-75759499 | MsG0780040308.01.T01:CDS |
| TGCGACTTCAATCTTATCAC+TGG | 0.486885 | 7:-75760686 | MsG0780040308.01.T01:intron |
| TCGGCTCGGATGCAAGTTTG+AGG | 0.487860 | 7:-75759678 | MsG0780040308.01.T01:CDS |
| TCTTCATCTACTATGCCAAC+TGG | 0.498050 | 7:-75760854 | MsG0780040308.01.T01:CDS |
| AACATAAACACAACAGACAT+TGG | 0.500486 | 7:-75759721 | MsG0780040308.01.T01:CDS |
| CTCAACAGAATCCCATCATC+AGG | 0.502882 | 7:+75759610 | None:intergenic |
| ATGAGTCCAAATATGAGTAA+TGG | 0.506659 | 7:-75759556 | MsG0780040308.01.T01:CDS |
| ACTTCAGGCAACTAGTGAAT+CGG | 0.509698 | 7:-75759930 | MsG0780040308.01.T01:CDS |
| GACAGGTTGTGGTAAAGGCT+AGG | 0.517250 | 7:-75759462 | MsG0780040308.01.T01:CDS |
| ATAGCTTCTTCATGACGAAA+AGG | 0.518956 | 7:+75760716 | None:intergenic |
| TGTTTAATGTTAGCACCAGT+TGG | 0.522006 | 7:+75760839 | None:intergenic |
| AGCAAGCCTAACAATTCTCT+CGG | 0.533128 | 7:-75759896 | MsG0780040308.01.T01:CDS |
| TCCAAATATGAGTAATGGAA+AGG | 0.539255 | 7:-75759551 | MsG0780040308.01.T01:CDS |
| TGGTTGATCAAGCTGAAGCA+GGG | 0.540137 | 7:-75760802 | MsG0780040308.01.T01:CDS |
| AAATGATGTGTTGGCCATGA+AGG | 0.544128 | 7:-75760945 | MsG0780040308.01.T01:CDS |
| CTAGTGAATCGGATTCCAAA+AGG | 0.548975 | 7:-75759919 | MsG0780040308.01.T01:CDS |
| CTCTCGGATTCATGTCATAG+TGG | 0.556554 | 7:-75759880 | MsG0780040308.01.T01:CDS |
| TTCTGTTGAAACCTGATGAT+GGG | 0.562403 | 7:-75759621 | MsG0780040308.01.T01:CDS |
| ACGTCATGCGATCTTGAAGA+AGG | 0.562469 | 7:-75759646 | MsG0780040308.01.T01:CDS |
| ATGAATCCGAGAGAATTGTT+AGG | 0.563126 | 7:+75759890 | None:intergenic |
| GGATGTCCATGTATCTTGGA+AGG | 0.564804 | 7:+75760737 | None:intergenic |
| ACAGGTTGTGGTAAAGGCTA+GGG | 0.566914 | 7:-75759461 | MsG0780040308.01.T01:CDS |
| AGGATTCCTTCCAAGATACA+TGG | 0.572846 | 7:-75760743 | MsG0780040308.01.T01:CDS |
| TGTTGAAATATTGAGTCATA+GGG | 0.579645 | 7:+75759760 | None:intergenic |
| GTTCTGTTGAAACCTGATGA+TGG | 0.585720 | 7:-75759622 | MsG0780040308.01.T01:CDS |
| TGATTGCAAACTGCAATGGA+AGG | 0.595196 | 7:-75761040 | None:intergenic |
| GTGATAAGATTGAAGTCGCA+AGG | 0.603411 | 7:+75760689 | None:intergenic |
| GATGATGGGATTCTGTTGAG+TGG | 0.618865 | 7:-75759607 | MsG0780040308.01.T01:CDS |
| TCGGATTCATGTCATAGTGG+TGG | 0.629875 | 7:-75759877 | MsG0780040308.01.T01:CDS |
| TGGTTGCATAAATGATGTGT+TGG | 0.649661 | 7:-75760954 | MsG0780040308.01.T01:CDS |
| GGTTGATCAAGCTGAAGCAG+GGG | 0.657993 | 7:-75760801 | MsG0780040308.01.T01:CDS |
| AGGGATGTTCTAAAAGGACA+AGG | 0.659458 | 7:-75759442 | MsG0780040308.01.T01:CDS |
| AACACTCCCAATGAATTGCG+TGG | 0.668913 | 7:-75760974 | MsG0780040308.01.T01:CDS |
| GTTGGCCATGAAGGACACAT+TGG | 0.700386 | 7:-75760936 | MsG0780040308.01.T01:CDS |
| TCATCACTACAATAAAGACA+AGG | 0.723155 | 7:+75759406 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTAGTTACAAAATTGTA+GGG | - | Chr7:75759787-75759806 | MsG0780040308.01.T01:CDS | 15.0% |
| !!! | CATATACTAATAGATTTTTT+TGG | + | Chr7:75760208-75760227 | None:intergenic | 15.0% |
| !!! | GGATTTTTTTTTAATCATTT+TGG | - | Chr7:75759937-75759956 | MsG0780040308.01.T01:CDS | 15.0% |
| !!! | TTTTTAATCATTTTGGAATT+TGG | - | Chr7:75759944-75759963 | MsG0780040308.01.T01:intron | 15.0% |
| !! | ATCTTAAATTAACCAAATGT+AGG | + | Chr7:75759997-75760016 | None:intergenic | 20.0% |
| !! | CAATTTAGTTACAAAATTGT+AGG | - | Chr7:75759786-75759805 | MsG0780040308.01.T01:CDS | 20.0% |
| !! | TATTGCATAGTTAAAACTAT+GGG | + | Chr7:75760134-75760153 | None:intergenic | 20.0% |
| !! | TCTAATTCTATATGGTATTT+GGG | + | Chr7:75760388-75760407 | None:intergenic | 20.0% |
| !! | TTATTGCATAGTTAAAACTA+TGG | + | Chr7:75760135-75760154 | None:intergenic | 20.0% |
| !! | TTCTAATTCTATATGGTATT+TGG | + | Chr7:75760389-75760408 | None:intergenic | 20.0% |
| !!! | ATTTTAATGACTAAATTGTG+TGG | - | Chr7:75759970-75759989 | MsG0780040308.01.T01:intron | 20.0% |
| !!! | CTACAATTTTGTAACTAAAT+TGG | + | Chr7:75759788-75759807 | None:intergenic | 20.0% |
| !!! | CTTAAAATGATTGATTTGAA+AGG | + | Chr7:75759897-75759916 | None:intergenic | 20.0% |
| ! | ATTGCATAGTTAAAACTATG+GGG | + | Chr7:75760133-75760152 | None:intergenic | 25.0% |
| ! | ATTGTGTTGAAGGAAAATAA+AGG | - | Chr7:75760898-75760917 | MsG0780040308.01.T01:CDS | 25.0% |
| ! | GACAAAGAAAAAGAACAAAT+TGG | - | Chr7:75760550-75760569 | MsG0780040308.01.T01:intron | 25.0% |
| ! | GCATAGTTTCTAATTCTATA+TGG | + | Chr7:75760396-75760415 | None:intergenic | 25.0% |
| ! | GTTCATAAATAATGTGATTG+AGG | - | Chr7:75759916-75759935 | MsG0780040308.01.T01:CDS | 25.0% |
| ! | TAAACAAGCATTATCAAGAA+TGG | - | Chr7:75759575-75759594 | MsG0780040308.01.T01:CDS | 25.0% |
| ! | TGTCATATACCATATAGATT+TGG | - | Chr7:75760444-75760463 | MsG0780040308.01.T01:intron | 25.0% |
| ! | TGTTGAAATATTGAGTCATA+GGG | + | Chr7:75760640-75760659 | None:intergenic | 25.0% |
| ! | TTGTGTTGAAGGAAAATAAA+GGG | - | Chr7:75760899-75760918 | MsG0780040308.01.T01:CDS | 25.0% |
| !! | ACTACATTAACATACTGTTT+TGG | + | Chr7:75760109-75760128 | None:intergenic | 25.0% |
| !! | CTACATTAACATACTGTTTT+GGG | + | Chr7:75760108-75760127 | None:intergenic | 25.0% |
| !! | TTAACAATTTTGTTGAATGC+TGG | + | Chr7:75760232-75760251 | None:intergenic | 25.0% |
| !!! | GTGCTTTATTTTCATTATAG+TGG | - | Chr7:75759621-75759640 | MsG0780040308.01.T01:CDS | 25.0% |
| !!! | TATTTTCATTATAGTGGACA+TGG | - | Chr7:75759627-75759646 | MsG0780040308.01.T01:CDS | 25.0% |
| !!! | TTTTTTGGTAAGATCAACAT+AGG | + | Chr7:75760193-75760212 | None:intergenic | 25.0% |
| AACATAAACACAACAGACAT+TGG | - | Chr7:75760676-75760695 | MsG0780040308.01.T01:intron | 30.0% | |
| ACAACATAAGCTACATCAAA+AGG | + | Chr7:75759751-75759770 | None:intergenic | 30.0% | |
| AGGGAAATTAAGTAATAGAC+AGG | - | Chr7:75760918-75760937 | MsG0780040308.01.T01:CDS | 30.0% | |
| ATGAGTCCAAATATGAGTAA+TGG | - | Chr7:75760841-75760860 | MsG0780040308.01.T01:CDS | 30.0% | |
| ATTAAGTAATAGACAGGTTG+TGG | - | Chr7:75760924-75760943 | MsG0780040308.01.T01:CDS | 30.0% | |
| CAACATAAGCTACATCAAAA+GGG | + | Chr7:75759750-75759769 | None:intergenic | 30.0% | |
| GTGTTGAAATATTGAGTCAT+AGG | + | Chr7:75760641-75760660 | None:intergenic | 30.0% | |
| TCATCACTACAATAAAGACA+AGG | + | Chr7:75760994-75761013 | None:intergenic | 30.0% | |
| TTGCAACAAAAAGACATCAT+CGG | + | Chr7:75761022-75761041 | None:intergenic | 30.0% | |
| ! | ATAGTAGATGAAGAGCTTTT+AGG | + | Chr7:75759537-75759556 | None:intergenic | 30.0% |
| ! | TCCAAATATGAGTAATGGAA+AGG | - | Chr7:75760846-75760865 | MsG0780040308.01.T01:CDS | 30.0% |
| !! | GTTCTTTTTCTTTGTCGATT+AGG | + | Chr7:75760546-75760565 | None:intergenic | 30.0% |
| AAAAGGATGTCCATGTATCT+TGG | + | Chr7:75759667-75759686 | None:intergenic | 35.0% | |
| AAATTGTGTGGTCCTACATT+TGG | - | Chr7:75759982-75760001 | MsG0780040308.01.T01:intron | 35.0% | |
| ACCATATAGATTTGGACTTC+AGG | - | Chr7:75760452-75760471 | MsG0780040308.01.T01:intron | 35.0% | |
| ATAGCTTCTTCATGACGAAA+AGG | + | Chr7:75759684-75759703 | None:intergenic | 35.0% | |
| ATCAGTGAGAAGCTGAATAT+TGG | + | Chr7:75759511-75759530 | None:intergenic | 35.0% | |
| ATGAATCCGAGAGAATTGTT+AGG | + | Chr7:75760510-75760529 | None:intergenic | 35.0% | |
| GCCTTTCCATTACTCATATT+TGG | + | Chr7:75760850-75760869 | None:intergenic | 35.0% | |
| TAATAGACAGGTTGTGGTAA+AGG | - | Chr7:75760930-75760949 | MsG0780040308.01.T01:CDS | 35.0% | |
| TGGTTGCATAAATGATGTGT+TGG | - | Chr7:75759443-75759462 | MsG0780040308.01.T01:CDS | 35.0% | |
| TGTTTAATGTTAGCACCAGT+TGG | + | Chr7:75759561-75759580 | None:intergenic | 35.0% | |
| TTCTGTTGAAACCTGATGAT+GGG | - | Chr7:75760776-75760795 | MsG0780040308.01.T01:CDS | 35.0% | |
| ! | ACTCATCTCCTTGAGTTTTT+CGG | - | Chr7:75760700-75760719 | MsG0780040308.01.T01:CDS | 35.0% |
| ! | ATGAGTAATGGAAAGGCTTA+TGG | - | Chr7:75760853-75760872 | MsG0780040308.01.T01:CDS | 35.0% |
| ! | TCCTCGTTTGATGACAAAAA+TGG | - | Chr7:75760577-75760596 | MsG0780040308.01.T01:intron | 35.0% |
| ! | TTTTTGTCATCAAACGAGGA+TGG | + | Chr7:75760577-75760596 | None:intergenic | 35.0% |
| !! | ATTATAGTGGACATGGAACT+AGG | - | Chr7:75759634-75759653 | MsG0780040308.01.T01:CDS | 35.0% |
| ACTTCAGGCAACTAGTGAAT+CGG | - | Chr7:75760467-75760486 | MsG0780040308.01.T01:intron | 40.0% | |
| AGCAAGCCTAACAATTCTCT+CGG | - | Chr7:75760501-75760520 | MsG0780040308.01.T01:intron | 40.0% | |
| AGGATTCCTTCCAAGATACA+TGG | - | Chr7:75759654-75759673 | MsG0780040308.01.T01:CDS | 40.0% | |
| ATCAACCGATCAAGACGATT+TGG | - | Chr7:75759810-75759829 | MsG0780040308.01.T01:CDS | 40.0% | |
| ATGCAACCACGCAATTCATT+GGG | + | Chr7:75759432-75759451 | None:intergenic | 40.0% | |
| CTAGTGAATCGGATTCCAAA+AGG | - | Chr7:75760478-75760497 | MsG0780040308.01.T01:intron | 40.0% | |
| GAGTCATAGGGAATAGTCTT+TGG | + | Chr7:75760628-75760647 | None:intergenic | 40.0% | |
| GCCTGAAGTCCAAATCTATA+TGG | + | Chr7:75760456-75760475 | None:intergenic | 40.0% | |
| GTGATAAGATTGAAGTCGCA+AGG | + | Chr7:75759711-75759730 | None:intergenic | 40.0% | |
| GTTCTGTTGAAACCTGATGA+TGG | - | Chr7:75760775-75760794 | MsG0780040308.01.T01:CDS | 40.0% | |
| TACCACCAAATCGTCTTGAT+CGG | + | Chr7:75759818-75759837 | None:intergenic | 40.0% | |
| TATGCAACCACGCAATTCAT+TGG | + | Chr7:75759433-75759452 | None:intergenic | 40.0% | |
| TCTTCATCTACTATGCCAAC+TGG | - | Chr7:75759543-75759562 | MsG0780040308.01.T01:CDS | 40.0% | |
| TGCGACTTCAATCTTATCAC+TGG | - | Chr7:75759711-75759730 | MsG0780040308.01.T01:CDS | 40.0% | |
| TGCTGTTCAGATTGTGTTGA+AGG | - | Chr7:75760888-75760907 | MsG0780040308.01.T01:CDS | 40.0% | |
| ! | AAACAAGAGGCTAGCAGTTT+TGG | - | Chr7:75759383-75759402 | MsG0780040308.01.T01:CDS | 40.0% |
| ! | AAATGATGTGTTGGCCATGA+AGG | - | Chr7:75759452-75759471 | MsG0780040308.01.T01:CDS | 40.0% |
| ! | AAGGCTAGGGATGTTCTAAA+AGG | - | Chr7:75760949-75760968 | MsG0780040308.01.T01:CDS | 40.0% |
| !! | ACACATTGGTGAAGCGTTTT+GGG | - | Chr7:75759475-75759494 | MsG0780040308.01.T01:CDS | 40.0% |
| !! | AGGGATGTTCTAAAAGGACA+AGG | - | Chr7:75760955-75760974 | MsG0780040308.01.T01:CDS | 40.0% |
| !! | ATTGTTAGGCTTGCTCCTTT+TGG | + | Chr7:75760496-75760515 | None:intergenic | 40.0% |
| !!! | GCCATTTTTGTCATCAAACG+AGG | + | Chr7:75760581-75760600 | None:intergenic | 40.0% |
| AACACTCCCAATGAATTGCG+TGG | - | Chr7:75759423-75759442 | MsG0780040308.01.T01:CDS | 45.0% | |
| ACAGGTTGTGGTAAAGGCTA+GGG | - | Chr7:75760936-75760955 | MsG0780040308.01.T01:CDS | 45.0% | |
| ACGTCATGCGATCTTGAAGA+AGG | - | Chr7:75760751-75760770 | MsG0780040308.01.T01:CDS | 45.0% | |
| ATGGTTGATCAAGCTGAAGC+AGG | - | Chr7:75759594-75759613 | MsG0780040308.01.T01:CDS | 45.0% | |
| CTCAACAGAATCCCATCATC+AGG | + | Chr7:75760790-75760809 | None:intergenic | 45.0% | |
| CTCTCGGATTCATGTCATAG+TGG | - | Chr7:75760517-75760536 | MsG0780040308.01.T01:intron | 45.0% | |
| CTTCACCAATGTGTCCTTCA+TGG | + | Chr7:75759469-75759488 | None:intergenic | 45.0% | |
| GGATGTCCATGTATCTTGGA+AGG | + | Chr7:75759663-75759682 | None:intergenic | 45.0% | |
| TCGGATTCATGTCATAGTGG+TGG | - | Chr7:75760520-75760539 | MsG0780040308.01.T01:intron | 45.0% | |
| TGGTTGATCAAGCTGAAGCA+GGG | - | Chr7:75759595-75759614 | MsG0780040308.01.T01:CDS | 45.0% | |
| ! | AACCGATCAAGACGATTTGG+TGG | - | Chr7:75759813-75759832 | MsG0780040308.01.T01:CDS | 45.0% |
| ! | CGGATGCAAGTTTGAGGTTT+CGG | - | Chr7:75760725-75760744 | MsG0780040308.01.T01:CDS | 45.0% |
| !! | AAGAGGCTAGCAGTTTTGGT+AGG | - | Chr7:75759387-75759406 | MsG0780040308.01.T01:CDS | 45.0% |
| !! | CGCAATTCATTGGGAGTGTT+TGG | + | Chr7:75759423-75759442 | None:intergenic | 45.0% |
| !! | GACACATTGGTGAAGCGTTT+TGG | - | Chr7:75759474-75759493 | MsG0780040308.01.T01:CDS | 45.0% |
| !! | GATGATGGGATTCTGTTGAG+TGG | - | Chr7:75760790-75760809 | MsG0780040308.01.T01:CDS | 45.0% |
| !! | TCTCCTTGAGTTTTTCGGCT+CGG | - | Chr7:75760705-75760724 | MsG0780040308.01.T01:CDS | 45.0% |
| CATCCGAGCCGAAAAACTCA+AGG | + | Chr7:75760711-75760730 | None:intergenic | 50.0% | |
| GACAGGTTGTGGTAAAGGCT+AGG | - | Chr7:75760935-75760954 | MsG0780040308.01.T01:CDS | 50.0% | |
| GGTTGATCAAGCTGAAGCAG+GGG | - | Chr7:75759596-75759615 | MsG0780040308.01.T01:CDS | 50.0% | |
| GTTGGCCATGAAGGACACAT+TGG | - | Chr7:75759461-75759480 | MsG0780040308.01.T01:CDS | 50.0% | |
| !! | TCGGCTCGGATGCAAGTTTG+AGG | - | Chr7:75760719-75760738 | MsG0780040308.01.T01:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 75759372 | 75761047 | 75759372 | ID=MsG0780040308.01;Name=MsG0780040308.01 |
| Chr7 | mRNA | 75759372 | 75761047 | 75759372 | ID=MsG0780040308.01.T01;Parent=MsG0780040308.01;Name=MsG0780040308.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|1|1|2|0|315 |
| Chr7 | exon | 75760687 | 75761047 | 75760687 | ID=MsG0780040308.01.T01:exon:14493;Parent=MsG0780040308.01.T01 |
| Chr7 | exon | 75759372 | 75759958 | 75759372 | ID=MsG0780040308.01.T01:exon:14492;Parent=MsG0780040308.01.T01 |
| Chr7 | CDS | 75760687 | 75761047 | 75760687 | ID=MsG0780040308.01.T01:cds;Parent=MsG0780040308.01.T01 |
| Chr7 | CDS | 75759372 | 75759958 | 75759372 | ID=MsG0780040308.01.T01:cds;Parent=MsG0780040308.01.T01 |
| Gene Sequence |
| Protein sequence |
