AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180003337.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003337.01.T02 MTR_1g059840 96.935 261 8 0 1 261 1 261 0.0 525
MsG0180003337.01.T02 MTR_7g104790 62.000 250 84 6 19 261 41 286 2.60e-102 303
MsG0180003337.01.T02 MTR_7g104790 61.200 250 86 4 19 261 17 262 2.84e-102 303
MsG0180003337.01.T02 MTR_7g104785 56.522 230 93 3 19 247 18 241 2.23e-83 254
MsG0180003337.01.T02 MTR_2g020080 32.000 200 104 8 76 258 8 192 7.62e-17 78.6
MsG0180003337.01.T02 MTR_2g015760 28.235 170 113 4 34 197 13 179 5.68e-14 70.9
MsG0180003337.01.T02 MTR_7g104760 81.818 33 6 0 215 247 16 48 3.98e-11 60.1
MsG0180003337.01.T01 MTR_1g059840 96.935 261 8 0 1 261 1 261 0.0 525
MsG0180003337.01.T01 MTR_7g104790 62.000 250 84 6 19 261 41 286 2.60e-102 303
MsG0180003337.01.T01 MTR_7g104790 61.200 250 86 4 19 261 17 262 2.84e-102 303
MsG0180003337.01.T01 MTR_7g104785 56.522 230 93 3 19 247 18 241 2.23e-83 254
MsG0180003337.01.T01 MTR_2g020080 32.000 200 104 8 76 258 8 192 7.62e-17 78.6
MsG0180003337.01.T01 MTR_2g015760 28.235 170 113 4 34 197 13 179 5.68e-14 70.9
MsG0180003337.01.T01 MTR_7g104760 81.818 33 6 0 215 247 16 48 3.98e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003337.01.T02 AT3G56470 50.000 216 107 1 34 248 27 242 1.15e-70 221
MsG0180003337.01.T02 AT1G57790 46.789 218 111 3 36 250 13 228 5.84e-66 209
MsG0180003337.01.T02 AT4G00893 42.373 236 129 3 17 248 26 258 2.01e-60 196
MsG0180003337.01.T02 AT4G10695 42.786 201 115 0 48 248 1 201 9.04e-56 179
MsG0180003337.01.T02 AT4G10695 42.786 201 115 0 48 248 1 201 9.04e-56 179
MsG0180003337.01.T02 AT1G49360 41.518 224 118 8 39 250 8 230 1.33e-49 167
MsG0180003337.01.T02 AT1G49360 41.518 224 118 8 39 250 8 230 1.33e-49 167
MsG0180003337.01.T02 AT1G49360 41.518 224 118 8 39 250 8 230 1.33e-49 167
MsG0180003337.01.T02 AT1G49360 41.333 225 119 8 39 251 88 311 1.73e-49 169
MsG0180003337.01.T02 AT1G49360 41.333 225 119 8 39 251 111 334 1.77e-49 169
MsG0180003337.01.T02 AT4G12370 47.619 168 86 1 83 248 1 168 1.77e-47 160
MsG0180003337.01.T02 AT4G10660 43.787 169 95 0 70 238 9 177 3.46e-46 157
MsG0180003337.01.T02 AT3G18720 40.826 218 114 6 39 244 52 266 1.58e-44 154
MsG0180003337.01.T02 AT4G12382 47.619 126 66 0 35 160 9 134 1.28e-40 137
MsG0180003337.01.T02 AT4G12382 47.619 126 66 0 35 160 9 134 1.28e-40 137
MsG0180003337.01.T02 AT2G44735 49.138 116 52 4 136 248 110 221 6.04e-26 104
MsG0180003337.01.T02 AT4G10700 43.373 83 47 0 69 151 8 90 7.57e-21 89.0
MsG0180003337.01.T02 AT4G22035 32.800 125 79 3 35 155 12 135 9.93e-12 63.5
MsG0180003337.01.T02 AT4G22660 32.031 128 71 3 35 150 9 132 3.26e-11 63.2
MsG0180003337.01.T01 AT3G56470 50.000 216 107 1 34 248 27 242 1.15e-70 221
MsG0180003337.01.T01 AT1G57790 46.789 218 111 3 36 250 13 228 5.84e-66 209
MsG0180003337.01.T01 AT4G00893 42.373 236 129 3 17 248 26 258 2.01e-60 196
MsG0180003337.01.T01 AT4G10695 42.786 201 115 0 48 248 1 201 9.04e-56 179
MsG0180003337.01.T01 AT4G10695 42.786 201 115 0 48 248 1 201 9.04e-56 179
MsG0180003337.01.T01 AT1G49360 41.518 224 118 8 39 250 8 230 1.33e-49 167
MsG0180003337.01.T01 AT1G49360 41.518 224 118 8 39 250 8 230 1.33e-49 167
MsG0180003337.01.T01 AT1G49360 41.518 224 118 8 39 250 8 230 1.33e-49 167
MsG0180003337.01.T01 AT1G49360 41.333 225 119 8 39 251 88 311 1.73e-49 169
MsG0180003337.01.T01 AT1G49360 41.333 225 119 8 39 251 111 334 1.77e-49 169
MsG0180003337.01.T01 AT4G12370 47.619 168 86 1 83 248 1 168 1.77e-47 160
MsG0180003337.01.T01 AT4G10660 43.787 169 95 0 70 238 9 177 3.46e-46 157
MsG0180003337.01.T01 AT3G18720 40.826 218 114 6 39 244 52 266 1.58e-44 154
MsG0180003337.01.T01 AT4G12382 47.619 126 66 0 35 160 9 134 1.28e-40 137
MsG0180003337.01.T01 AT4G12382 47.619 126 66 0 35 160 9 134 1.28e-40 137
MsG0180003337.01.T01 AT2G44735 49.138 116 52 4 136 248 110 221 6.04e-26 104
MsG0180003337.01.T01 AT4G10700 43.373 83 47 0 69 151 8 90 7.57e-21 89.0
MsG0180003337.01.T01 AT4G22035 32.800 125 79 3 35 155 12 135 9.93e-12 63.5
MsG0180003337.01.T01 AT4G22660 32.031 128 71 3 35 150 9 132 3.26e-11 63.2

Find 111 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCTACACATTACTGATTT+TGG 0.040084 1:+60805792 None:intergenic
TCATACCACTGACCAAATTT+TGG 0.144092 1:+60806694 None:intergenic
AGCTTTGTTGACATTTAATT+TGG 0.199386 1:-60803625 MsG0180003337.01.T01:three_prime_UTR
TTATTCTTATGCTAAGTTAT+AGG 0.231344 1:-60805570 MsG0180003337.01.T01:intron
TGGTCTAACTTGAAAATAAT+AGG 0.240703 1:+60806113 None:intergenic
AGAGGTGGAAAATGATAATT+TGG 0.262706 1:-60806878 MsG0180003337.01.T01:CDS
TTGATAGTCTCCCGAGTAAA+AGG 0.263964 1:+60806538 None:intergenic
CATATCTCGTTTAGCCTTAG+AGG 0.269854 1:-60806809 MsG0180003337.01.T01:CDS
AGTTCCTAGTTATCTCTCTT+TGG 0.284498 1:-60803889 MsG0180003337.01.T01:three_prime_UTR
TGCCGAAGGCAGCATCTTTA+CGG 0.292948 1:-60803829 MsG0180003337.01.T01:three_prime_UTR
TGACAAAAGGCAGACGGTTT+TGG 0.312961 1:+60806359 None:intergenic
GTTCATTAGTTAAGCTCATT+TGG 0.324864 1:-60803857 MsG0180003337.01.T01:three_prime_UTR
GTTTCTTGTCTTCTCATTCA+AGG 0.344326 1:-60806034 MsG0180003337.01.T01:three_prime_UTR
GGTCTAACTTGAAAATAATA+GGG 0.354290 1:+60806114 None:intergenic
GCCGAAGGCAGCATCTTTAC+GGG 0.359572 1:-60803828 MsG0180003337.01.T01:three_prime_UTR
ATGCATAATAAGCTAGTATA+TGG 0.362474 1:-60805709 MsG0180003337.01.T01:intron
CTCGTAAGCAGTGGCATGAC+TGG 0.366506 1:-60805908 MsG0180003337.01.T01:three_prime_UTR
AATCTATAGATTTATATAGA+TGG 0.384207 1:-60803596 MsG0180003337.01.T01:three_prime_UTR
TCAATCCATATGCTTTCAAA+AGG 0.390242 1:+60805873 None:intergenic
ATCATTTCTAATAGTTCAGC+AGG 0.392094 1:+60806832 None:intergenic
AGCACGGACATTGTCCTCTA+AGG 0.396495 1:+60806795 None:intergenic
ATTGAGTTTCCTGAGTTGAA+TGG 0.407380 1:-60806637 MsG0180003337.01.T01:CDS
GCCATCAGCACATGTCACCC+TGG 0.425844 1:-60806409 MsG0180003337.01.T01:CDS
GCCCGTAAAGATGCTGCCTT+CGG 0.427482 1:+60803827 None:intergenic
CACAAGAGAACGCAACTATC+TGG 0.427646 1:+60806491 None:intergenic
CTGAGTCTAACGGGTTGGCT+AGG 0.428305 1:-60806289 MsG0180003337.01.T01:CDS
TGCTACCTGCAGTGTAATCT+AGG 0.428792 1:-60805606 MsG0180003337.01.T01:intron
AGAGTTTGTTACACAAAAGA+TGG 0.432818 1:-60806610 MsG0180003337.01.T01:CDS
GCTTATATATGCAGAACAAT+TGG 0.435526 1:-60803678 MsG0180003337.01.T01:three_prime_UTR
CAAGTTAGACCAGGCCTCAA+TGG 0.439625 1:-60806102 MsG0180003337.01.T01:three_prime_UTR
GAATAGGTCCTCCGCTGCAC+AGG 0.439702 1:+60806661 None:intergenic
CTTCTGCGGTTTGCAAGAGT+TGG 0.446022 1:-60806774 MsG0180003337.01.T01:CDS
CTTCCCATTCCATTGAGGCC+TGG 0.447033 1:+60806093 None:intergenic
TGAGTCTAACGGGTTGGCTA+GGG 0.453281 1:-60806288 MsG0180003337.01.T01:CDS
CTCAGGAAACTCAATGGAAT+AGG 0.455431 1:+60806645 None:intergenic
TTCTCTGGGCATTTGGGTGG+AGG 0.456945 1:+60806223 None:intergenic
CATTCAAGGACTGACCTCCT+TGG 0.460684 1:-60806020 MsG0180003337.01.T01:three_prime_UTR
AATACATCAACCATGGTGAT+TGG 0.465857 1:+60806719 None:intergenic
TTGATCCATCTGAACGCACT+TGG 0.477811 1:-60806261 MsG0180003337.01.T01:CDS
TGGTATGTCATCTCAAATCT+TGG 0.481609 1:+60806511 None:intergenic
AATAAGCTTGTGTTCTGTAA+TGG 0.484684 1:-60806325 MsG0180003337.01.T01:CDS
GTGCTGATGGCCACAATAGT+AGG 0.487396 1:+60806421 None:intergenic
TTCCATATGCTACTGACAAA+AGG 0.491994 1:+60806346 None:intergenic
CCATCAGCACATGTCACCCT+GGG 0.492069 1:-60806408 MsG0180003337.01.T01:CDS
CACACCAAAGAGAGATAACT+AGG 0.497508 1:+60803885 None:intergenic
TAGAGGTATTTGTTATCACT+TGG 0.505928 1:-60805775 MsG0180003337.01.T01:intron
AGACCAGGCCTCAATGGAAT+GGG 0.506121 1:-60806096 MsG0180003337.01.T01:three_prime_UTR
CAGCAGAGACATGATAATCA+AGG 0.506814 1:+60803742 None:intergenic
ATGGTTGGTTACTGCTATAC+CGG 0.507693 1:-60806591 MsG0180003337.01.T01:CDS
TAGCTCTTCCCATTCCATTG+AGG 0.512554 1:+60806088 None:intergenic
CCCAGGGTGACATGTGCTGA+TGG 0.513422 1:+60806408 None:intergenic
GTTCACCATGCGTACAGCAT+TGG 0.515987 1:+60806741 None:intergenic
TCGTAAGCAGTGGCATGACT+GGG 0.517661 1:-60805907 MsG0180003337.01.T01:three_prime_UTR
ATTCAACTCAGGAAACTCAA+TGG 0.520817 1:+60806639 None:intergenic
TAGACCAGGCCTCAATGGAA+TGG 0.520927 1:-60806097 MsG0180003337.01.T01:three_prime_UTR
ACAGTGAACAATACACAGTC+AGG 0.522970 1:+60806457 None:intergenic
ATAATTTGGAGCTGCAAACA+TGG 0.524692 1:-60806864 MsG0180003337.01.T01:CDS
ACGCTCCAAGTGCGTTCAGA+TGG 0.530295 1:+60806256 None:intergenic
CTGACCTCCTTGGAAATATG+AGG 0.530915 1:-60806010 MsG0180003337.01.T01:three_prime_UTR
CAATCCATATGCTTTCAAAA+GGG 0.538554 1:+60805874 None:intergenic
AAGCACCACTTCACTATGCA+TGG 0.542673 1:+60803697 None:intergenic
TTTGTTACACAAAAGATGGT+TGG 0.543077 1:-60806606 MsG0180003337.01.T01:CDS
TATAACATCTCCCTCTTGCT+CGG 0.543615 1:+60806163 None:intergenic
GTGACCCACTCAGTTGCCCC+AGG 0.548400 1:+60806391 None:intergenic
AATACACAGTCAGGTGATGT+TGG 0.549189 1:+60806466 None:intergenic
CAGAAGAGAAGCAACAGAGG+TGG 0.554810 1:-60806893 MsG0180003337.01.T01:CDS
ATTGCCTGAGTCTAACGGGT+TGG 0.555672 1:-60806294 MsG0180003337.01.T01:CDS
GCATGTTAGTCCTACTATTG+TGG 0.555933 1:-60806431 MsG0180003337.01.T01:CDS
TACTGTTCCTCATATTTCCA+AGG 0.557830 1:+60806003 None:intergenic
AAGGCAGCATCTTTACGGGC+GGG 0.561507 1:-60803824 MsG0180003337.01.T01:three_prime_UTR
AAATTCTCTGGGCATTTGGG+TGG 0.572307 1:+60806220 None:intergenic
TGAATCCTAGATTACACTGC+AGG 0.578095 1:+60805601 None:intergenic
AAACCCAGACATAAAATGAA+AGG 0.578262 1:+60803566 None:intergenic
ACACTCGATCAGTTCTTGGC+CGG 0.582893 1:+60806572 None:intergenic
GAAATTTATGACCGAGCAAG+AGG 0.585940 1:-60806174 MsG0180003337.01.T01:exon
TCACCCTGGGGCAACTGAGT+GGG 0.589444 1:-60806395 MsG0180003337.01.T01:CDS
CCCAGACATAAAATGAAAGG+TGG 0.594347 1:+60803569 None:intergenic
CAGTCATGCCACTGCTTACG+AGG 0.597324 1:+60805909 None:intergenic
ATAGTGTACAATAGTATGAG+TGG 0.598345 1:+60805534 None:intergenic
CTCATTTGGAAGCATGCCGA+AGG 0.599268 1:-60803843 MsG0180003337.01.T01:three_prime_UTR
GTCACCCTGGGGCAACTGAG+TGG 0.599763 1:-60806396 MsG0180003337.01.T01:CDS
CTAGCCAACCCGTTAGACTC+AGG 0.605339 1:+60806290 None:intergenic
ACTCTAGATCCATTCAACTC+AGG 0.606054 1:+60806628 None:intergenic
TTTGGAAAATACATCAACCA+TGG 0.609449 1:+60806712 None:intergenic
AATAGGTCCTCCGCTGCACA+GGG 0.610369 1:+60806662 None:intergenic
CCAAAATCAGTAATGTGTAG+AGG 0.611064 1:-60805792 MsG0180003337.01.T01:intron
TGAATCTGATGCTAAAGACT+AGG 0.611228 1:-60803767 MsG0180003337.01.T01:three_prime_UTR
CATATGGATTGAACCACCAA+AGG 0.612060 1:-60805862 MsG0180003337.01.T01:three_prime_UTR
TCTTGCAAACCGCAGAAGCA+CGG 0.620256 1:+60806779 None:intergenic
GAGTCTAACGGGTTGGCTAG+GGG 0.622563 1:-60806287 MsG0180003337.01.T01:CDS
TCTATGACCCTGTGCAGCGG+AGG 0.622795 1:-60806669 MsG0180003337.01.T01:CDS
GAAGGCAGCATCTTTACGGG+CGG 0.624480 1:-60803825 MsG0180003337.01.T01:three_prime_UTR
GAGCAGAAGAGAAGCAACAG+AGG 0.625517 1:-60806896 MsG0180003337.01.T01:CDS
AGCAGAGACATGATAATCAA+GGG 0.627265 1:+60803743 None:intergenic
AGGAGGCTACTTATATGTGA+AGG 0.630780 1:-60803793 MsG0180003337.01.T01:three_prime_UTR
GGACAATGTCCGTGCTTCTG+CGG 0.633574 1:-60806788 MsG0180003337.01.T01:CDS
TGCTACTGACAAAAGGCAGA+CGG 0.641521 1:+60806353 None:intergenic
TGACCCACTCAGTTGCCCCA+GGG 0.643613 1:+60806392 None:intergenic
AATTCTATGACCCTGTGCAG+CGG 0.644847 1:-60806672 MsG0180003337.01.T01:CDS
TGTTGCCAATGCTGTACGCA+TGG 0.644907 1:-60806746 MsG0180003337.01.T01:CDS
AAATTTATGACCGAGCAAGA+GGG 0.650243 1:-60806173 MsG0180003337.01.T01:exon
TAACAAGAAGTTATAAAACA+AGG 0.653809 1:+60805746 None:intergenic
GCTACTATCCTCGTAAGCAG+TGG 0.662398 1:-60805917 MsG0180003337.01.T01:three_prime_UTR
ACGGGCGGGATGTACGTAGG+AGG 0.673229 1:-60803810 MsG0180003337.01.T01:three_prime_UTR
CGTAAGCAGTGGCATGACTG+GGG 0.674467 1:-60805906 MsG0180003337.01.T01:three_prime_UTR
TTTACGGGCGGGATGTACGT+AGG 0.677649 1:-60803813 MsG0180003337.01.T01:three_prime_UTR
TGTTCCTCATATTTCCAAGG+AGG 0.678301 1:+60806006 None:intergenic
TAATTTGGAGCTGCAAACAT+GGG 0.684242 1:-60806863 MsG0180003337.01.T01:CDS
TCATTTCTAATAGTTCAGCA+GGG 0.696179 1:+60806833 None:intergenic
CATCAGCACATGTCACCCTG+GGG 0.702309 1:-60806407 MsG0180003337.01.T01:CDS
GCATGGTGAACCAATCACCA+TGG 0.715864 1:-60806729 MsG0180003337.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTTTTATTCACAAT+TGG - Chr1:60804236-60804255 MsG0180003337.01.T01:intron 10.0%
!!! TTTTTTTTTTATTCACAATT+GGG - Chr1:60804237-60804256 MsG0180003337.01.T01:intron 10.0%
!! AATCTATAGATTTATATAGA+TGG - Chr1:60807720-60807739 MsG0180003337.01.T01:intron 15.0%
!! TAGTATGTAACAATAATATT+TGG + Chr1:60806200-60806219 None:intergenic 15.0%
!!! GAATTAAACTAAATTAGTTT+AGG - Chr1:60803994-60804013 MsG0180003337.01.T01:intron 15.0%
!! AAACTAAATGTGTGAAAATT+GGG - Chr1:60803721-60803740 MsG0180003337.01.T01:three_prime_UTR 20.0%
!! AAACTATAGGAGAAATTATT+AGG - Chr1:60806617-60806636 MsG0180003337.01.T01:CDS 20.0%
!! AAAGAAGGAAAAATAACTAT+TGG - Chr1:60806429-60806448 MsG0180003337.01.T01:CDS 20.0%
!! AAGAAGGAAAAATAACTATT+GGG - Chr1:60806430-60806449 MsG0180003337.01.T01:CDS 20.0%
!! AGATGCTACAAAAAAATATA+CGG + Chr1:60805988-60806007 None:intergenic 20.0%
!! ATTGTTTAATGTGAAATGAA+TGG + Chr1:60806361-60806380 None:intergenic 20.0%
!! TAAACTAAATGTGTGAAAAT+TGG - Chr1:60803720-60803739 MsG0180003337.01.T01:three_prime_UTR 20.0%
!! TAACAAGAAGTTATAAAACA+AGG + Chr1:60805573-60805592 None:intergenic 20.0%
!! TTATTCTTATGCTAAGTTAT+AGG - Chr1:60805746-60805765 MsG0180003337.01.T01:intron 20.0%
!!! AAGAATTTTAGTGAAACAAA+TGG - Chr1:60805496-60805515 MsG0180003337.01.T01:intron 20.0%
!!! ACTTATACCATTTTTTAACT+AGG - Chr1:60807280-60807299 MsG0180003337.01.T01:intron 20.0%
!!! ATTTAGCAGATTTTTAAAGT+TGG - Chr1:60807174-60807193 MsG0180003337.01.T01:intron 20.0%
!!! CATATTTCTGAGTTTAATTT+TGG + Chr1:60805933-60805952 None:intergenic 20.0%
!!! CTTAATGCATTTTGTAATTT+TGG - Chr1:60806859-60806878 MsG0180003337.01.T01:CDS 20.0%
!!! CTTATACCATTTTTTAACTA+GGG - Chr1:60807281-60807300 MsG0180003337.01.T01:intron 20.0%
!!! TTCATTTACAACTCTAAAAA+AGG - Chr1:60805954-60805973 MsG0180003337.01.T01:three_prime_UTR 20.0%
!!! TTGATGTATTTTCCAAAATT+TGG - Chr1:60804610-60804629 MsG0180003337.01.T01:intron 20.0%
!!! TTGATTTTACATGAATAATC+AGG - Chr1:60806272-60806291 MsG0180003337.01.T01:CDS 20.0%
!!! TTTTCTTTAATCCTTTTACT+CGG - Chr1:60804767-60804786 MsG0180003337.01.T01:intron 20.0%
! AACTTACAATGTTAAGAAGA+AGG - Chr1:60806796-60806815 MsG0180003337.01.T01:CDS 25.0%
! AATCTATACAGATCAAACAA+TGG + Chr1:60806699-60806718 None:intergenic 25.0%
! ACATGCATTTCTGATTATTT+AGG - Chr1:60804377-60804396 MsG0180003337.01.T01:intron 25.0%
! AGAAGGAAAAATAACTATTG+GGG - Chr1:60806431-60806450 MsG0180003337.01.T01:CDS 25.0%
! AGAGGAAAATCTAAACAAAA+TGG + Chr1:60807052-60807071 None:intergenic 25.0%
! ATGCATAATAAGCTAGTATA+TGG - Chr1:60805607-60805626 MsG0180003337.01.T01:intron 25.0%
! ATTTATTTAAGAGAGATGAC+TGG - Chr1:60806221-60806240 MsG0180003337.01.T01:CDS 25.0%
! GAAGAAATTAACAATGACAA+GGG - Chr1:60806881-60806900 MsG0180003337.01.T01:CDS 25.0%
! GATAACATAACATAACAACT+AGG + Chr1:60804209-60804228 None:intergenic 25.0%
! GGTCTAACTTGAAAATAATA+GGG + Chr1:60805205-60805224 None:intergenic 25.0%
! GTTAAACTCAAAGTATAAGT+TGG + Chr1:60807003-60807022 None:intergenic 25.0%
! TACAAAATGCATTAAGAACT+CGG + Chr1:60806855-60806874 None:intergenic 25.0%
! TGGTCTAACTTGAAAATAAT+AGG + Chr1:60805206-60805225 None:intergenic 25.0%
! TGTCATCTCATTATAATAGT+TGG - Chr1:60805820-60805839 MsG0180003337.01.T01:three_prime_UTR 25.0%
!! ACATATGACTTTTACATGAT+TGG - Chr1:60804050-60804069 MsG0180003337.01.T01:intron 25.0%
!! ACTAGATTTACAAATTTGCT+AGG + Chr1:60806950-60806969 None:intergenic 25.0%
!! ACTTATACTTTGAGTTTAAC+TGG - Chr1:60807003-60807022 MsG0180003337.01.T01:intron 25.0%
!! ATAACAAAAACACAAGTTGA+CGG - Chr1:60806819-60806838 MsG0180003337.01.T01:CDS 25.0%
!! ATTTTTGCGAAAAAATTCTC+TGG + Chr1:60805111-60805130 None:intergenic 25.0%
!! TAACAGTTCATCAACATTTT+TGG - Chr1:60805656-60805675 MsG0180003337.01.T01:intron 25.0%
!! TACAAGAGCTTTTATGTAAA+AGG + Chr1:60806063-60806082 None:intergenic 25.0%
!! TTATCACATTGATTGCATTA+GGG - Chr1:60803856-60803875 MsG0180003337.01.T01:three_prime_UTR 25.0%
!! TTTATCACATTGATTGCATT+AGG - Chr1:60803855-60803874 MsG0180003337.01.T01:three_prime_UTR 25.0%
!! TTTCTTTAATCCTTTTACTC+GGG - Chr1:60804768-60804787 MsG0180003337.01.T01:intron 25.0%
!! TTTTATTCTTTGTACATCAG+AGG + Chr1:60807094-60807113 None:intergenic 25.0%
!! TTTTTGCGAAAAAATTCTCT+GGG + Chr1:60805110-60805129 None:intergenic 25.0%
!!! AATTTTTTCGCAAAAATTGG+TGG - Chr1:60805114-60805133 MsG0180003337.01.T01:intron 25.0%
!!! AGCTTTGTTGACATTTAATT+TGG - Chr1:60807691-60807710 MsG0180003337.01.T01:intron 25.0%
!!! GAGAATTTTTTCGCAAAAAT+TGG - Chr1:60805111-60805130 MsG0180003337.01.T01:intron 25.0%
!!! TATTATTTTCAAGTTAGACC+AGG - Chr1:60805205-60805224 MsG0180003337.01.T01:intron 25.0%
!!! TGAAAATTGGGTTTTAATGT+TGG - Chr1:60803733-60803752 MsG0180003337.01.T01:three_prime_UTR 25.0%
!!! TTCTCTAAAGTTCGTTTTTA+TGG - Chr1:60805341-60805360 MsG0180003337.01.T01:intron 25.0%
!!! TTTTCTTGTTGTACAAAAGA+TGG - Chr1:60806490-60806509 MsG0180003337.01.T01:CDS 25.0%
AAAAAATTCTCTGGGCATTT+GGG + Chr1:60805102-60805121 None:intergenic 30.0%
AAACCAAGCTCATTAATTGA+TGG - Chr1:60804120-60804139 MsG0180003337.01.T01:intron 30.0%
AAACCCAGACATAAAATGAA+AGG + Chr1:60807753-60807772 None:intergenic 30.0%
AACCAAGAATAAGACATTCT+TGG + Chr1:60806472-60806491 None:intergenic 30.0%
AACCAAGCTCATTAATTGAT+GGG - Chr1:60804121-60804140 MsG0180003337.01.T01:intron 30.0%
AATAAGCTTGTGTTCTGTAA+TGG - Chr1:60804991-60805010 MsG0180003337.01.T01:intron 30.0%
AATGCTCTTAAAATGCAACA+AGG + Chr1:60804330-60804349 None:intergenic 30.0%
AATTATTAGGAAAGACCTGA+AGG - Chr1:60806630-60806649 MsG0180003337.01.T01:CDS 30.0%
ACATTTAATATACGCCTTCT+AGG + Chr1:60806916-60806935 None:intergenic 30.0%
AGAGGTGGAAAATGATAATT+TGG - Chr1:60804438-60804457 MsG0180003337.01.T01:intron 30.0%
AGATGGTTTAATCTCAACTT+AGG - Chr1:60806507-60806526 MsG0180003337.01.T01:CDS 30.0%
AGTTATGACCAAAACTGAAA+TGG + Chr1:60806012-60806031 None:intergenic 30.0%
ATAGTGTACAATAGTATGAG+TGG + Chr1:60805785-60805804 None:intergenic 30.0%
ATCATTTCTAATAGTTCAGC+AGG + Chr1:60804487-60804506 None:intergenic 30.0%
ATTGATTGCATTAGGGTTTA+TGG - Chr1:60803863-60803882 MsG0180003337.01.T01:three_prime_UTR 30.0%
CAAAATGGTGCAATTAATAG+TGG + Chr1:60807037-60807056 None:intergenic 30.0%
CAATCCATATGCTTTCAAAA+GGG + Chr1:60805445-60805464 None:intergenic 30.0%
GACATGTAGATTCTATAGTA+TGG - Chr1:60806552-60806571 MsG0180003337.01.T01:CDS 30.0%
GCTTATATATGCAGAACAAT+TGG - Chr1:60807638-60807657 MsG0180003337.01.T01:intron 30.0%
GGAAAGGAAAGAAAAACTAT+AGG - Chr1:60806604-60806623 MsG0180003337.01.T01:CDS 30.0%
GGAAGAAATTAACAATGACA+AGG - Chr1:60806880-60806899 MsG0180003337.01.T01:CDS 30.0%
GTTATGACCAAAACTGAAAT+GGG + Chr1:60806011-60806030 None:intergenic 30.0%
GTTCATTAGTTAAGCTCATT+TGG - Chr1:60807459-60807478 MsG0180003337.01.T01:intron 30.0%
TAATATTTGGCAGTTTAACC+TGG + Chr1:60806187-60806206 None:intergenic 30.0%
TAGTCAATCTATGAAACTCT+CGG - Chr1:60807310-60807329 MsG0180003337.01.T01:intron 30.0%
TCAAGTCCCTAGTTAAAAAA+TGG + Chr1:60807290-60807309 None:intergenic 30.0%
TCAATCCATATGCTTTCAAA+AGG + Chr1:60805446-60805465 None:intergenic 30.0%
TCATTTCTAATAGTTCAGCA+GGG + Chr1:60804486-60804505 None:intergenic 30.0%
TGTATAGATTATTCCACCTA+AGG - Chr1:60806709-60806728 MsG0180003337.01.T01:CDS 30.0%
TTTGGAAAATACATCAACCA+TGG + Chr1:60804607-60804626 None:intergenic 30.0%
TTTGTTACACAAAAGATGGT+TGG - Chr1:60804710-60804729 MsG0180003337.01.T01:intron 30.0%
! ATTTTCCAAAATTTGGTCAG+TGG - Chr1:60804617-60804636 MsG0180003337.01.T01:intron 30.0%
! TAACAAAAACACAAGTTGAC+GGG - Chr1:60806820-60806839 MsG0180003337.01.T01:CDS 30.0%
! TTTTATTCACAATTGGGTAG+TGG - Chr1:60804243-60804262 MsG0180003337.01.T01:intron 30.0%
!! AGAGTTTGTTACACAAAAGA+TGG - Chr1:60804706-60804725 MsG0180003337.01.T01:intron 30.0%
!! AGATTTACAAATTTGCTAGG+TGG + Chr1:60806947-60806966 None:intergenic 30.0%
!! GCTAGTCAGTATTTTTGAAA+TGG - Chr1:60806086-60806105 MsG0180003337.01.T01:three_prime_UTR 30.0%
!! TAGAGGTATTTGTTATCACT+TGG - Chr1:60805541-60805560 MsG0180003337.01.T01:intron 30.0%
!! TTTTACATGATTGGTTGTGA+TGG - Chr1:60804059-60804078 MsG0180003337.01.T01:intron 30.0%
!!! TCAGTATTTTTGAAATGGCT+TGG - Chr1:60806091-60806110 MsG0180003337.01.T01:three_prime_UTR 30.0%
AAAAACACTCGATCAGTTCT+TGG + Chr1:60804751-60804770 None:intergenic 35.0%
AAATTTATGACCGAGCAAGA+GGG - Chr1:60805143-60805162 MsG0180003337.01.T01:intron 35.0%
AATACATCAACCATGGTGAT+TGG + Chr1:60804600-60804619 None:intergenic 35.0%
AATCCAGAAAAATCCTTTGG+TGG + Chr1:60805470-60805489 None:intergenic 35.0%
AATCTCAACTTAGGTGGTTT+GGG - Chr1:60806516-60806535 MsG0180003337.01.T01:CDS 35.0%
AGCAGAGACATGATAATCAA+GGG + Chr1:60807576-60807595 None:intergenic 35.0%
AGTTCCTAGTTATCTCTCTT+TGG - Chr1:60807427-60807446 MsG0180003337.01.T01:intron 35.0%
ATGGAATCCAATCACAAAGT+TGG + Chr1:60807216-60807235 None:intergenic 35.0%
ATTCAACTCAGGAAACTCAA+TGG + Chr1:60804680-60804699 None:intergenic 35.0%
CATCAATTTCGCATAATGTC+AGG - Chr1:60803594-60803613 MsG0180003337.01.T01:three_prime_UTR 35.0%
CCAAAATCAGTAATGTGTAG+AGG - Chr1:60805524-60805543 MsG0180003337.01.T01:intron 35.0%
GAAAAAATTCTCTGGGCATT+TGG + Chr1:60805103-60805122 None:intergenic 35.0%
GAAATTAACAATGACAAGGG+AGG - Chr1:60806884-60806903 MsG0180003337.01.T01:CDS 35.0%
GAAGAGCTAAAAACACTAGA+TGG - Chr1:60805242-60805261 MsG0180003337.01.T01:intron 35.0%
GAGAATCCAGAAAAATCCTT+TGG + Chr1:60805473-60805492 None:intergenic 35.0%
GATTCTATAGTATGGAGACT+TGG - Chr1:60806560-60806579 MsG0180003337.01.T01:CDS 35.0%
GTACTCAGTTAAATACTGAG+AGG + Chr1:60807070-60807089 None:intergenic 35.0%
GTTTCTTGTCTTCTCATTCA+AGG - Chr1:60805282-60805301 MsG0180003337.01.T01:intron 35.0%
TAATCTCAACTTAGGTGGTT+TGG - Chr1:60806515-60806534 MsG0180003337.01.T01:CDS 35.0%
TAATGTGCCAACTTTGTGAT+TGG - Chr1:60807206-60807225 MsG0180003337.01.T01:intron 35.0%
TACTGTTCCTCATATTTCCA+AGG + Chr1:60805316-60805335 None:intergenic 35.0%
TCTGCCTAACTTTCTTAGTA+GGG - Chr1:60806397-60806416 MsG0180003337.01.T01:CDS 35.0%
TGAATCTGATGCTAAAGACT+AGG - Chr1:60807549-60807568 MsG0180003337.01.T01:intron 35.0%
TGGTATGTCATCTCAAATCT+TGG + Chr1:60804808-60804827 None:intergenic 35.0%
TGGTTTAATCTCAACTTAGG+TGG - Chr1:60806510-60806529 MsG0180003337.01.T01:CDS 35.0%
TTAAGAAAGAGAGAACGAAG+TGG + Chr1:60803556-60803575 None:intergenic 35.0%
TTCCATATGCTACTGACAAA+AGG + Chr1:60804973-60804992 None:intergenic 35.0%
TTTCGCAAAAATTGGTGGAA+GGG - Chr1:60805119-60805138 MsG0180003337.01.T01:intron 35.0%
! AGCATTCAAGTGGATTTGTT+CGG - Chr1:60804344-60804363 MsG0180003337.01.T01:intron 35.0%
! AGCCAAGAATGTCTTATTCT+TGG - Chr1:60806467-60806486 MsG0180003337.01.T01:CDS 35.0%
! ATAATTTGGAGCTGCAAACA+TGG - Chr1:60804452-60804471 MsG0180003337.01.T01:intron 35.0%
! ATTGAGTTTCCTGAGTTGAA+TGG - Chr1:60804679-60804698 MsG0180003337.01.T01:intron 35.0%
! CCACCTTTCATTTTATGTCT+GGG - Chr1:60807747-60807766 MsG0180003337.01.T01:five_prime_UTR 35.0%
! CTCAAAGTATAAGTTGGCTT+TGG + Chr1:60806997-60807016 None:intergenic 35.0%
! CTTTTATTGCCTGAGTCTAA+CGG - Chr1:60805017-60805036 MsG0180003337.01.T01:intron 35.0%
! TAATTTGGAGCTGCAAACAT+GGG - Chr1:60804453-60804472 MsG0180003337.01.T01:intron 35.0%
! TCATACCACTGACCAAATTT+TGG + Chr1:60804625-60804644 None:intergenic 35.0%
! TCCACCTTTCATTTTATGTC+TGG - Chr1:60807746-60807765 MsG0180003337.01.T01:five_prime_UTR 35.0%
! TTTTATTGCCTGAGTCTAAC+GGG - Chr1:60805018-60805037 MsG0180003337.01.T01:intron 35.0%
! TTTTCGCAAAAATTGGTGGA+AGG - Chr1:60805118-60805137 MsG0180003337.01.T01:intron 35.0%
! TTTTTCCATGCATAGTGAAG+TGG - Chr1:60807614-60807633 MsG0180003337.01.T01:intron 35.0%
!! AAGACCCTTTTGAAAGCATA+TGG - Chr1:60805438-60805457 MsG0180003337.01.T01:intron 35.0%
!! AAGAGAGATGACTGGTTTAT+TGG - Chr1:60806229-60806248 MsG0180003337.01.T01:CDS 35.0%
!! AATTGGGTAGTGGAAGAATA+TGG - Chr1:60804253-60804272 MsG0180003337.01.T01:intron 35.0%
!! AGAGAGATGACTGGTTTATT+GGG - Chr1:60806230-60806249 MsG0180003337.01.T01:CDS 35.0%
!!! CCTCTACACATTACTGATTT+TGG + Chr1:60805527-60805546 None:intergenic 35.0%
!!! GCATTTTAAGAGCATTCAAG+TGG - Chr1:60804334-60804353 MsG0180003337.01.T01:intron 35.0%
AATACACAGTCAGGTGATGT+TGG + Chr1:60804853-60804872 None:intergenic 40.0%
ACAGTGAACAATACACAGTC+AGG + Chr1:60804862-60804881 None:intergenic 40.0%
ACTCTAGATCCATTCAACTC+AGG + Chr1:60804691-60804710 None:intergenic 40.0%
AGATTATTCCACCTAAGGCT+TGG - Chr1:60806714-60806733 MsG0180003337.01.T01:CDS 40.0%
AGGAGGCTACTTATATGTGA+AGG - Chr1:60807523-60807542 MsG0180003337.01.T01:intron 40.0%
CAATCTATGAAACTCTCGGT+TGG - Chr1:60807314-60807333 MsG0180003337.01.T01:intron 40.0%
CACACCAAAGAGAGATAACT+AGG + Chr1:60807434-60807453 None:intergenic 40.0%
CACCCATCAATTAATGAGCT+TGG + Chr1:60804126-60804145 None:intergenic 40.0%
CAGCAGAGACATGATAATCA+AGG + Chr1:60807577-60807596 None:intergenic 40.0%
CATCAAAACCATTGACCTTC+AGG + Chr1:60806648-60806667 None:intergenic 40.0%
CCCAGACATAAAATGAAAGG+TGG + Chr1:60807750-60807769 None:intergenic 40.0%
CCTAACTTTCTTAGTAGGGA+GGG - Chr1:60806401-60806420 MsG0180003337.01.T01:CDS 40.0%
CTAACTTTCTTAGTAGGGAG+GGG - Chr1:60806402-60806421 MsG0180003337.01.T01:CDS 40.0%
CTCAGGAAACTCAATGGAAT+AGG + Chr1:60804674-60804693 None:intergenic 40.0%
CTCTCCCAAAAAAGAAAAGC+AGG + Chr1:60806755-60806774 None:intergenic 40.0%
GAAAAGAGAAAAGGGATTCC+AGG - Chr1:60806166-60806185 MsG0180003337.01.T01:three_prime_UTR 40.0%
GAAATTTATGACCGAGCAAG+AGG - Chr1:60805142-60805161 MsG0180003337.01.T01:intron 40.0%
GACTACTCAGAAAACCTTGT+TGG - Chr1:60807131-60807150 MsG0180003337.01.T01:intron 40.0%
GCATGTTAGTCCTACTATTG+TGG - Chr1:60804885-60804904 MsG0180003337.01.T01:intron 40.0%
GTCTGCCTAACTTTCTTAGT+AGG - Chr1:60806396-60806415 MsG0180003337.01.T01:CDS 40.0%
TATAACATCTCCCTCTTGCT+CGG + Chr1:60805156-60805175 None:intergenic 40.0%
TGAATCCTAGATTACACTGC+AGG + Chr1:60805718-60805737 None:intergenic 40.0%
TGTTCCTCATATTTCCAAGG+AGG + Chr1:60805313-60805332 None:intergenic 40.0%
TGTTGGATCTCTGTGTAGAA+TGG - Chr1:60803750-60803769 MsG0180003337.01.T01:three_prime_UTR 40.0%
TTCGCAAAAATTGGTGGAAG+GGG - Chr1:60805120-60805139 MsG0180003337.01.T01:intron 40.0%
TTCTGAGTAGTCAGAATTGC+TGG + Chr1:60807123-60807142 None:intergenic 40.0%
TTTCCAAAGCCGATGATGAT+GGG + Chr1:60806150-60806169 None:intergenic 40.0%
TTTGGTTACACGACAAAGTC+AGG + Chr1:60806979-60806998 None:intergenic 40.0%
! AGCACTGTTTAGTTCCAACA+AGG + Chr1:60807148-60807167 None:intergenic 40.0%
! AGCATCTCCCATTTCAGTTT+TGG - Chr1:60806001-60806020 MsG0180003337.01.T01:three_prime_UTR 40.0%
! ATGGTTGGTTACTGCTATAC+CGG - Chr1:60804725-60804744 MsG0180003337.01.T01:intron 40.0%
! CATATGGATTGAACCACCAA+AGG - Chr1:60805454-60805473 MsG0180003337.01.T01:intron 40.0%
! GAACCACCAAAGGATTTTTC+TGG - Chr1:60805464-60805483 MsG0180003337.01.T01:intron 40.0%
! TGCCTTTTGTCAGTAGCATA+TGG - Chr1:60804968-60804987 MsG0180003337.01.T01:intron 40.0%
! TTGATAGTCTCCCGAGTAAA+AGG + Chr1:60804781-60804800 None:intergenic 40.0%
! TTTTCCAAAGCCGATGATGA+TGG + Chr1:60806151-60806170 None:intergenic 40.0%
!! CATATCTCGTTTAGCCTTAG+AGG - Chr1:60804507-60804526 MsG0180003337.01.T01:intron 40.0%
!! CGGCTTTGGAAAAGAGAAAA+GGG - Chr1:60806158-60806177 MsG0180003337.01.T01:three_prime_UTR 40.0%
!! GACTTGGAGAGAGTATTAGA+TGG - Chr1:60806576-60806595 MsG0180003337.01.T01:CDS 40.0%
!! GCTGCCTGCTTTTCTTTTTT+GGG - Chr1:60806748-60806767 MsG0180003337.01.T01:CDS 40.0%
!! TCGGCTTTGGAAAAGAGAAA+AGG - Chr1:60806157-60806176 MsG0180003337.01.T01:three_prime_UTR 40.0%
!! TGCTGCCTGCTTTTCTTTTT+TGG - Chr1:60806747-60806766 MsG0180003337.01.T01:CDS 40.0%
!! TGGAGAGAGTATTAGATGGA+GGG - Chr1:60806580-60806599 MsG0180003337.01.T01:CDS 40.0%
!! TTGGAGAGAGTATTAGATGG+AGG - Chr1:60806579-60806598 MsG0180003337.01.T01:CDS 40.0%
!!! TTCTTTTTTGGGAGAGAGAG+AGG - Chr1:60806759-60806778 MsG0180003337.01.T01:CDS 40.0%
AAATTCTCTGGGCATTTGGG+TGG + Chr1:60805099-60805118 None:intergenic 45.0%
AAGCACCACTTCACTATGCA+TGG + Chr1:60807622-60807641 None:intergenic 45.0%
AAGGGAGGATAAAGCCTAGA+AGG - Chr1:60806899-60806918 MsG0180003337.01.T01:CDS 45.0%
AATTCTATGACCCTGTGCAG+CGG - Chr1:60804644-60804663 MsG0180003337.01.T01:intron 45.0%
AGGAAAGACCTGAAGGTCAA+TGG - Chr1:60806637-60806656 MsG0180003337.01.T01:CDS 45.0%
CACAAGAGAACGCAACTATC+TGG + Chr1:60804828-60804847 None:intergenic 45.0%
CCAGTTCAGCTGTAAAAGCA+TGG + Chr1:60807235-60807254 None:intergenic 45.0%
CCCTCCCTACTAAGAAAGTT+AGG + Chr1:60806404-60806423 None:intergenic 45.0%
CTAACCATGCCCATCATCAT+CGG - Chr1:60806138-60806157 MsG0180003337.01.T01:three_prime_UTR 45.0%
CTGACCTCCTTGGAAATATG+AGG - Chr1:60805306-60805325 MsG0180003337.01.T01:intron 45.0%
GCCTAACTTTCTTAGTAGGG+AGG - Chr1:60806400-60806419 MsG0180003337.01.T01:CDS 45.0%
GTATTAGATGGAGGGTGGAA+AGG - Chr1:60806588-60806607 MsG0180003337.01.T01:CDS 45.0%
TAGCTCTTCCCATTCCATTG+AGG + Chr1:60805231-60805250 None:intergenic 45.0%
TGCTACCTGCAGTGTAATCT+AGG - Chr1:60805710-60805729 MsG0180003337.01.T01:intron 45.0%
TGCTACTGACAAAAGGCAGA+CGG + Chr1:60804966-60804985 None:intergenic 45.0%
TGGATCTCTGTGTAGAATGG+TGG - Chr1:60803753-60803772 MsG0180003337.01.T01:three_prime_UTR 45.0%
TTGATCCATCTGAACGCACT+TGG - Chr1:60805055-60805074 MsG0180003337.01.T01:intron 45.0%
! CCATGCTTTTACAGCTGAAC+TGG - Chr1:60807232-60807251 MsG0180003337.01.T01:intron 45.0%
! TGACAAAAGGCAGACGGTTT+TGG + Chr1:60804960-60804979 None:intergenic 45.0%
!! ACGCACTTGGAGCGTTTTAT+CGG - Chr1:60805068-60805087 MsG0180003337.01.T01:intron 45.0%
!! AGAGAGTATTAGATGGAGGG+TGG - Chr1:60806583-60806602 MsG0180003337.01.T01:CDS 45.0%
!! GGAACTCTGAAATTGCAGCA+TGG + Chr1:60807413-60807432 None:intergenic 45.0%
ACACTCGATCAGTTCTTGGC+CGG + Chr1:60804747-60804766 None:intergenic 50.0%
AGACCAGGCCTCAATGGAAT+GGG - Chr1:60805220-60805239 MsG0180003337.01.T01:intron 50.0%
AGCACGGACATTGTCCTCTA+AGG + Chr1:60804524-60804543 None:intergenic 50.0%
AGCGACAACAACCAAGCCTT+AGG + Chr1:60806728-60806747 None:intergenic 50.0%
CAAGTTAGACCAGGCCTCAA+TGG - Chr1:60805214-60805233 MsG0180003337.01.T01:intron 50.0%
CAGAAGAGAAGCAACAGAGG+TGG - Chr1:60804423-60804442 MsG0180003337.01.T01:intron 50.0%
CATTAAGAACTCGGAAGCCC+TGG + Chr1:60806846-60806865 None:intergenic 50.0%
CATTCAAGGACTGACCTCCT+TGG - Chr1:60805296-60805315 MsG0180003337.01.T01:intron 50.0%
CTTCTGCGGTTTGCAAGAGT+TGG - Chr1:60804542-60804561 MsG0180003337.01.T01:intron 50.0%
GACAACAACCAAGCCTTAGG+TGG + Chr1:60806725-60806744 None:intergenic 50.0%
GAGCAGAAGAGAAGCAACAG+AGG - Chr1:60804420-60804439 MsG0180003337.01.T01:intron 50.0%
GCATGGTGAACCAATCACCA+TGG - Chr1:60804587-60804606 MsG0180003337.01.T01:intron 50.0%
GCTACTATCCTCGTAAGCAG+TGG - Chr1:60805399-60805418 MsG0180003337.01.T01:intron 50.0%
GTAGGGAGGGGAAGAAAAGA+AGG - Chr1:60806414-60806433 MsG0180003337.01.T01:CDS 50.0%
GTTCACCATGCGTACAGCAT+TGG + Chr1:60804578-60804597 None:intergenic 50.0%
TAGACCAGGCCTCAATGGAA+TGG - Chr1:60805219-60805238 MsG0180003337.01.T01:intron 50.0%
TCGTAAGCAGTGGCATGACT+GGG - Chr1:60805409-60805428 MsG0180003337.01.T01:intron 50.0%
TCTTGCAAACCGCAGAAGCA+CGG + Chr1:60804540-60804559 None:intergenic 50.0%
TGCCGAAGGCAGCATCTTTA+CGG - Chr1:60807487-60807506 MsG0180003337.01.T01:intron 50.0%
TGTTGCCAATGCTGTACGCA+TGG - Chr1:60804570-60804589 MsG0180003337.01.T01:intron 50.0%
! AAAACACAAGTTGACGGGCC+AGG - Chr1:60806825-60806844 MsG0180003337.01.T01:CDS 50.0%
! AAACACAAGTTGACGGGCCA+GGG - Chr1:60806826-60806845 MsG0180003337.01.T01:CDS 50.0%
! ATTGCCTGAGTCTAACGGGT+TGG - Chr1:60805022-60805041 MsG0180003337.01.T01:intron 50.0%
! CTCATTTGGAAGCATGCCGA+AGG - Chr1:60807473-60807492 MsG0180003337.01.T01:intron 50.0%
! GTGCTGATGGCCACAATAGT+AGG + Chr1:60804898-60804917 None:intergenic 50.0%
! TTAGGTGGTTTGGGCATCTG+TGG - Chr1:60806525-60806544 MsG0180003337.01.T01:CDS 50.0%
!! AAAGCCGATGATGATGGGCA+TGG + Chr1:60806145-60806164 None:intergenic 50.0%
!! ATGCCCATCATCATCGGCTT+TGG - Chr1:60806144-60806163 MsG0180003337.01.T01:three_prime_UTR 50.0%
!! TGAGTCTAACGGGTTGGCTA+GGG - Chr1:60805028-60805047 MsG0180003337.01.T01:intron 50.0%
!! TTTTGGGAGAGAGAGAGGAG+AGG - Chr1:60806764-60806783 MsG0180003337.01.T01:CDS 50.0%
AAGGCAGCATCTTTACGGGC+GGG - Chr1:60807492-60807511 MsG0180003337.01.T01:intron 55.0%
AATAGGTCCTCCGCTGCACA+GGG + Chr1:60804657-60804676 None:intergenic 55.0%
ACGCTCCAAGTGCGTTCAGA+TGG + Chr1:60805063-60805082 None:intergenic 55.0%
CAGTCATGCCACTGCTTACG+AGG + Chr1:60805410-60805429 None:intergenic 55.0%
CATCAGCACATGTCACCCTG+GGG - Chr1:60804909-60804928 MsG0180003337.01.T01:intron 55.0%
CCATCAGCACATGTCACCCT+GGG - Chr1:60804908-60804927 MsG0180003337.01.T01:intron 55.0%
CGTAAGCAGTGGCATGACTG+GGG - Chr1:60805410-60805429 MsG0180003337.01.T01:intron 55.0%
CTAGCCAACCCGTTAGACTC+AGG + Chr1:60805029-60805048 None:intergenic 55.0%
CTCGTAAGCAGTGGCATGAC+TGG - Chr1:60805408-60805427 MsG0180003337.01.T01:intron 55.0%
CTTCCCATTCCATTGAGGCC+TGG + Chr1:60805226-60805245 None:intergenic 55.0%
GAAGGCAGCATCTTTACGGG+CGG - Chr1:60807491-60807510 MsG0180003337.01.T01:intron 55.0%
GCCCGTAAAGATGCTGCCTT+CGG + Chr1:60807492-60807511 None:intergenic 55.0%
GCCGAAGGCAGCATCTTTAC+GGG - Chr1:60807488-60807507 MsG0180003337.01.T01:intron 55.0%
GGACAATGTCCGTGCTTCTG+CGG - Chr1:60804528-60804547 MsG0180003337.01.T01:intron 55.0%
TTCTCTGGGCATTTGGGTGG+AGG + Chr1:60805096-60805115 None:intergenic 55.0%
TTTACGGGCGGGATGTACGT+AGG - Chr1:60807503-60807522 MsG0180003337.01.T01:intron 55.0%
!! CTGAGTCTAACGGGTTGGCT+AGG - Chr1:60805027-60805046 MsG0180003337.01.T01:intron 55.0%
!! GAGTCTAACGGGTTGGCTAG+GGG - Chr1:60805029-60805048 MsG0180003337.01.T01:intron 55.0%
CCCAGGGTGACATGTGCTGA+TGG + Chr1:60804911-60804930 None:intergenic 60.0%
GAATAGGTCCTCCGCTGCAC+AGG + Chr1:60804658-60804677 None:intergenic 60.0%
GAGAGAGAGAGGAGAGGAGG+GGG - Chr1:60806770-60806789 MsG0180003337.01.T01:CDS 60.0%
GCCATCAGCACATGTCACCC+TGG - Chr1:60804907-60804926 MsG0180003337.01.T01:intron 60.0%
GGAGAGAGAGAGGAGAGGAG+GGG - Chr1:60806769-60806788 MsG0180003337.01.T01:CDS 60.0%
GGGAGAGAGAGAGGAGAGGA+GGG - Chr1:60806768-60806787 MsG0180003337.01.T01:CDS 60.0%
TCACCCTGGGGCAACTGAGT+GGG - Chr1:60804921-60804940 MsG0180003337.01.T01:intron 60.0%
TCTATGACCCTGTGCAGCGG+AGG - Chr1:60804647-60804666 MsG0180003337.01.T01:intron 60.0%
TGACCCACTCAGTTGCCCCA+GGG + Chr1:60804927-60804946 None:intergenic 60.0%
TGGGAGAGAGAGAGGAGAGG+AGG - Chr1:60806767-60806786 MsG0180003337.01.T01:CDS 60.0%
ACGGGCGGGATGTACGTAGG+AGG - Chr1:60807506-60807525 MsG0180003337.01.T01:intron 65.0%
GTCACCCTGGGGCAACTGAG+TGG - Chr1:60804920-60804939 MsG0180003337.01.T01:intron 65.0%
GTGACCCACTCAGTTGCCCC+AGG + Chr1:60804928-60804947 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 60803537 60807801 60803537 ID=MsG0180003337.01;Name=MsG0180003337.01
Chr1 mRNA 60803537 60807801 60803537 ID=MsG0180003337.01.T01;Parent=MsG0180003337.01;Name=MsG0180003337.01.T01;_AED=0.32;_eAED=0.32;_QI=72|1|1|1|0|0|3|768|261
Chr1 exon 60803537 60803911 60803537 ID=MsG0180003337.01.T01:exon:23269;Parent=MsG0180003337.01.T01
Chr1 exon 60805793 60806939 60805793 ID=MsG0180003337.01.T01:exon:23268;Parent=MsG0180003337.01.T01
Chr1 five_prime_UTR 60807730 60807801 60807730 ID=MsG0180003337.01.T01:five_prime_utr;Parent=MsG0180003337.01.T01
Chr1 CDS 60807698 60807729 60807698 ID=MsG0180003337.01.T01:cds;Parent=MsG0180003337.01.T01
Chr1 CDS 60806186 60806939 60806186 ID=MsG0180003337.01.T01:cds;Parent=MsG0180003337.01.T01
Chr1 three_prime_UTR 60805793 60806185 60805793 ID=MsG0180003337.01.T01:three_prime_utr;Parent=MsG0180003337.01.T01
Chr1 three_prime_UTR 60803537 60803911 60803537 ID=MsG0180003337.01.T01:three_prime_utr;Parent=MsG0180003337.01.T01
Chr1 mRNA 60805512 60807801 60805512 ID=MsG0180003337.01.T02;Parent=MsG0180003337.01;Name=MsG0180003337.01.T02;_AED=0.33;_eAED=0.33;_QI=72|1|1|1|0|0.5|2|674|261
Chr1 exon 60805512 60806939 60805512 ID=MsG0180003337.01.T02:exon:23270;Parent=MsG0180003337.01.T02
Chr1 five_prime_UTR 60807730 60807801 60807730 ID=MsG0180003337.01.T02:five_prime_utr;Parent=MsG0180003337.01.T02
Chr1 CDS 60807698 60807729 60807698 ID=MsG0180003337.01.T02:cds;Parent=MsG0180003337.01.T02
Chr1 CDS 60806186 60806939 60806186 ID=MsG0180003337.01.T02:cds;Parent=MsG0180003337.01.T02
Chr1 three_prime_UTR 60805512 60806185 60805512 ID=MsG0180003337.01.T02:three_prime_utr;Parent=MsG0180003337.01.T02
Gene Sequence

>MsG0180003337.01.T02

ATGTCAGGCAAAAAGAGAAGAAAATTGAAATTGTTAAGTGATACAATTGCTAAGAGCAGAAGAGAAGCAACAGAGGTGGAAAATGATAATTTGGAGCTGCAAACATGGGCTGATCTCCCTGCTGAACTATTAGAAATGATCATATCTCGTTTAGCCTTAGAGGACAATGTCCGTGCTTCTGCGGTTTGCAAGAGTTGGAATTTTGTTGCCAATGCTGTACGCATGGTGAACCAATCACCATGGTTGATGTATTTTCCAAAATTTGGTCAGTGGTATGAATTCTATGACCCTGTGCAGCGGAGGACCTATTCCATTGAGTTTCCTGAGTTGAATGGATCTAGAGTTTGTTACACAAAAGATGGTTGGTTACTGCTATACCGGCCAAGAACTGATCGAGTGTTTTTCTTTAATCCTTTTACTCGGGAGACTATCAAAATGCCAAGATTTGAGATGACATACCAGATAGTTGCGTTCTCTTGTGCTCCAACATCACCTGACTGTGTATTGTTCACTGTTAAGCATGTTAGTCCTACTATTGTGGCCATCAGCACATGTCACCCTGGGGCAACTGAGTGGGTCACTGTTAATTACCAAAACCGTCTGCCTTTTGTCAGTAGCATATGGAATAAGCTTGTGTTCTGTAATGGACTCTTTTATTGCCTGAGTCTAACGGGTTGGCTAGGGGTATTTGATCCATCTGAACGCACTTGGAGCGTTTTATCGGTACCTCCACCCAAATGCCCAGAGAATTTTTTCGCAAAAATTGGTGGAAGGGGAAATTTATGA

>MsG0180003337.01.T01

ATGTCAGGCAAAAAGAGAAGAAAATTGAAATTGTTAAGTGATACAATTGCTAAGAGCAGAAGAGAAGCAACAGAGGTGGAAAATGATAATTTGGAGCTGCAAACATGGGCTGATCTCCCTGCTGAACTATTAGAAATGATCATATCTCGTTTAGCCTTAGAGGACAATGTCCGTGCTTCTGCGGTTTGCAAGAGTTGGAATTTTGTTGCCAATGCTGTACGCATGGTGAACCAATCACCATGGTTGATGTATTTTCCAAAATTTGGTCAGTGGTATGAATTCTATGACCCTGTGCAGCGGAGGACCTATTCCATTGAGTTTCCTGAGTTGAATGGATCTAGAGTTTGTTACACAAAAGATGGTTGGTTACTGCTATACCGGCCAAGAACTGATCGAGTGTTTTTCTTTAATCCTTTTACTCGGGAGACTATCAAAATGCCAAGATTTGAGATGACATACCAGATAGTTGCGTTCTCTTGTGCTCCAACATCACCTGACTGTGTATTGTTCACTGTTAAGCATGTTAGTCCTACTATTGTGGCCATCAGCACATGTCACCCTGGGGCAACTGAGTGGGTCACTGTTAATTACCAAAACCGTCTGCCTTTTGTCAGTAGCATATGGAATAAGCTTGTGTTCTGTAATGGACTCTTTTATTGCCTGAGTCTAACGGGTTGGCTAGGGGTATTTGATCCATCTGAACGCACTTGGAGCGTTTTATCGGTACCTCCACCCAAATGCCCAGAGAATTTTTTCGCAAAAATTGGTGGAAGGGGAAATTTATGA

Protein sequence

>MsG0180003337.01.T02

MSGKKRRKLKLLSDTIAKSRREATEVENDNLELQTWADLPAELLEMIISRLALEDNVRASAVCKSWNFVANAVRMVNQSPWLMYFPKFGQWYEFYDPVQRRTYSIEFPELNGSRVCYTKDGWLLLYRPRTDRVFFFNPFTRETIKMPRFEMTYQIVAFSCAPTSPDCVLFTVKHVSPTIVAISTCHPGATEWVTVNYQNRLPFVSSIWNKLVFCNGLFYCLSLTGWLGVFDPSERTWSVLSVPPPKCPENFFAKIGGRGNL*

>MsG0180003337.01.T01

MSGKKRRKLKLLSDTIAKSRREATEVENDNLELQTWADLPAELLEMIISRLALEDNVRASAVCKSWNFVANAVRMVNQSPWLMYFPKFGQWYEFYDPVQRRTYSIEFPELNGSRVCYTKDGWLLLYRPRTDRVFFFNPFTRETIKMPRFEMTYQIVAFSCAPTSPDCVLFTVKHVSPTIVAISTCHPGATEWVTVNYQNRLPFVSSIWNKLVFCNGLFYCLSLTGWLGVFDPSERTWSVLSVPPPKCPENFFAKIGGRGNL*