AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480022717.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022717.01.T01 MTR_4g094405 75.431 464 13 4 63 425 161 624 0.0 670
MsG0480022717.01.T01 MTR_4g094405 89.855 69 5 1 1 67 1 69 1.51e-32 130
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022717.01.T01 AT2G17980 56.522 460 94 7 63 417 157 615 5.44e-165 478
MsG0480022717.01.T01 AT2G17980 73.134 67 16 1 1 67 1 65 3.19e-25 108
MsG0480022717.01.T01 AT4G31740 68.212 151 47 1 266 416 21 170 4.26e-67 211
MsG0480022717.01.T01 AT4G36100 48.889 135 32 4 218 321 107 235 4.30e-23 97.8

Find 100 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAACAATTGCTTCCTTAAA+TGG 0.132005 4:+75786462 None:intergenic
GTTGTTGTTGTTCCTGTTAT+TGG 0.201825 4:+75788048 None:intergenic
CCATTTAAAAGGTCCATTTA+AGG 0.245268 4:-75786475 MsG0480022717.01.T01:CDS
GAGAATGACATGATGGTTAG+AGG 0.262303 4:-75786938 MsG0480022717.01.T01:CDS
AGATCTTTGACATGAATTAA+TGG 0.270069 4:+75787961 None:intergenic
TGGATAGTGCTGATTCGTTT+TGG 0.273156 4:-75787244 MsG0480022717.01.T01:CDS
CCTCCCAAGCATATTATATA+TGG 0.307162 4:-75786375 MsG0480022717.01.T01:CDS
GCAAGTGGCAACCATTTAAA+AGG 0.326987 4:-75786486 MsG0480022717.01.T01:CDS
TTGCGATTCAGCATGACTTT+AGG 0.340194 4:-75787355 MsG0480022717.01.T01:CDS
GTAGAGCAGCTTACGTTGTT+GGG 0.345957 4:-75786321 MsG0480022717.01.T01:CDS
TTGGGGAAGAAGATGGGTTT+GGG 0.355383 4:-75786303 MsG0480022717.01.T01:CDS
TACATATCTGTCTCAGGATT+TGG 0.363551 4:+75786549 None:intergenic
GATCCCCGTGCTCCTAAGTC+TGG 0.372753 4:-75786516 MsG0480022717.01.T01:CDS
ATTGTTGAGAGGATTGTTAA+TGG 0.384032 4:-75787585 MsG0480022717.01.T01:CDS
TTCCTGTTATTGGTTGGTTT+AGG 0.389171 4:+75788058 None:intergenic
AACCTAAACCAACCAATAAC+AGG 0.402200 4:-75788060 MsG0480022717.01.T01:CDS
GACAGAATTTGTCGTAGATA+AGG 0.409373 4:+75787998 None:intergenic
GTTGGGGAAGAAGATGGGTT+TGG 0.412638 4:-75786304 MsG0480022717.01.T01:CDS
AACATTGCTACTGTGTTGTT+GGG 0.414573 4:-75787001 MsG0480022717.01.T01:CDS
GACTGGGCCGAGAAGCTCTA+TGG 0.415523 4:-75786672 MsG0480022717.01.T01:CDS
TAACATTGCTACTGTGTTGT+TGG 0.421174 4:-75787002 MsG0480022717.01.T01:CDS
TTGTTGAGAGGATTGTTAAT+GGG 0.426907 4:-75787584 MsG0480022717.01.T01:CDS
CGTGCTCCTAAGTCTGGTTC+AGG 0.428583 4:-75786510 MsG0480022717.01.T01:CDS
TTGAATAGGTTGAGTGTTCA+AGG 0.432954 4:-75787296 MsG0480022717.01.T01:CDS
CGTTGGTTCATGATGTGCTT+GGG 0.434927 4:-75787325 MsG0480022717.01.T01:CDS
ATTTGGTCTCCCTTCAATCA+AGG 0.437182 4:+75786566 None:intergenic
CTGTTGAAGCCTTGATTGAA+GGG 0.444683 4:-75786575 MsG0480022717.01.T01:CDS
TGACTGTCCATAGAGCTTCT+CGG 0.445565 4:+75786665 None:intergenic
TTTGATGGGACGGATTTGAT+TGG 0.447772 4:-75787103 MsG0480022717.01.T01:CDS
TGTAGAGCAGCTTACGTTGT+TGG 0.448636 4:-75786322 MsG0480022717.01.T01:CDS
ACTGTTGAAGCCTTGATTGA+AGG 0.449353 4:-75786576 MsG0480022717.01.T01:CDS
TTGAGTGTTCAAGGGGAGAA+AGG 0.451443 4:-75787287 MsG0480022717.01.T01:CDS
TACGTTGTTGGGGAAGAAGA+TGG 0.452960 4:-75786310 MsG0480022717.01.T01:CDS
TGCTTGGGTTGAAGTTGAAT+AGG 0.461236 4:-75787310 MsG0480022717.01.T01:CDS
GCAGAAGTAATATTGTTGAC+TGG 0.470359 4:-75786689 MsG0480022717.01.T01:CDS
AATCTTCGTCAGAAACAAAC+AGG 0.472595 4:-75788178 MsG0480022717.01.T01:intron
AATCACGGTGCGGAGTTTGA+TGG 0.479706 4:-75787118 MsG0480022717.01.T01:CDS
CGTTCCATATATAATATGCT+TGG 0.482424 4:+75786371 None:intergenic
CAACAATCTCCTCAATTTCA+CGG 0.487353 4:+75787601 None:intergenic
TTCAGCATGACTTTAGGTAT+AGG 0.487647 4:-75787349 MsG0480022717.01.T01:CDS
TAAGTCTCTGAATGTTTCGT+TGG 0.487831 4:-75786730 MsG0480022717.01.T01:CDS
CCGTTGGTTCATGATGTGCT+TGG 0.493871 4:-75787326 MsG0480022717.01.T01:CDS
AAGTCATGCTGAATCGCAAC+CGG 0.494196 4:+75787359 None:intergenic
GTTCCATATATAATATGCTT+GGG 0.496796 4:+75786372 None:intergenic
AATCTTAATGATCCGTCTGC+TGG 0.498721 4:-75787627 MsG0480022717.01.T01:CDS
TGCTTCCTCTCAGTCAGCTC+AGG 0.499034 4:+75787043 None:intergenic
AAGATGGGTTTGGGTAATGC+TGG 0.500440 4:-75786294 MsG0480022717.01.T01:CDS
GCGAGGTACATATCTGTCTC+AGG 0.503900 4:+75786543 None:intergenic
ATCACGGTGCGGAGTTTGAT+GGG 0.508088 4:-75787117 MsG0480022717.01.T01:CDS
ATTGAAAGGAGTGAACTTCT+CGG 0.509013 4:-75786911 MsG0480022717.01.T01:intron
CTTGCTCCTGAACCAGACTT+AGG 0.509749 4:+75786504 None:intergenic
CAGAAGTAATATTGTTGACT+GGG 0.512458 4:-75786688 MsG0480022717.01.T01:CDS
GTGTTCAAGGGGAGAAAGGT+GGG 0.520944 4:-75787283 MsG0480022717.01.T01:CDS
TCCGACTGAAGTGGAGGCTG+TGG 0.522299 4:-75786811 MsG0480022717.01.T01:intron
AGTGTTCAAGGGGAGAAAGG+TGG 0.524971 4:-75787284 MsG0480022717.01.T01:CDS
TTGTTGTTCCTGTTATTGGT+TGG 0.526111 4:+75788052 None:intergenic
GGCTACGCTTGGTGTTGTGC+CGG 0.528957 4:-75787548 MsG0480022717.01.T01:intron
ACGTTGTTGGGGAAGAAGAT+GGG 0.529725 4:-75786309 MsG0480022717.01.T01:CDS
TGAATAGGTTGAGTGTTCAA+GGG 0.531169 4:-75787295 MsG0480022717.01.T01:CDS
CACATCTGAACTACTGAGGT+GGG 0.531717 4:+75786265 None:intergenic
TGGTTAGAGGGAGTATTGAA+AGG 0.535987 4:-75786925 MsG0480022717.01.T01:CDS
TAGTGACAGACAGCTAGCTT+TGG 0.538193 4:-75786604 MsG0480022717.01.T01:CDS
TGACTTTAGGTATAGGCCGT+TGG 0.538298 4:-75787342 MsG0480022717.01.T01:CDS
TGGGATGAGATCTTATGAGT+TGG 0.539391 4:-75787264 MsG0480022717.01.T01:CDS
CTGACGAAGATTGAGAGACA+TGG 0.539905 4:+75788189 None:intergenic
GCTTGATTCATATGCTAAGA+AGG 0.541789 4:-75786960 MsG0480022717.01.T01:CDS
AGAATGACATGATGGTTAGA+GGG 0.546127 4:-75786937 MsG0480022717.01.T01:CDS
TGTGTTGTTGGGTGAGATCA+AGG 0.549244 4:-75786990 MsG0480022717.01.T01:CDS
TGAACCAGACTTAGGAGCAC+GGG 0.551638 4:+75786512 None:intergenic
CGGTGCGGAGTTTGATGGGA+CGG 0.555506 4:-75787113 MsG0480022717.01.T01:CDS
GATGAGGTCAATAAGAGGAC+TGG 0.574212 4:-75787145 MsG0480022717.01.T01:CDS
GAATAGGTTGAGTGTTCAAG+GGG 0.576422 4:-75787294 MsG0480022717.01.T01:CDS
TGCTGGTGACCGTGAAATTG+AGG 0.576895 4:-75787610 MsG0480022717.01.T01:CDS
AAGAGGACTGGAGGGAATCA+CGG 0.579431 4:-75787133 MsG0480022717.01.T01:CDS
ATGTTGATGAGGTCAATAAG+AGG 0.580113 4:-75787150 MsG0480022717.01.T01:CDS
TGAAGTGGAGGCTGTGGAAA+CGG 0.585010 4:-75786805 MsG0480022717.01.T01:intron
TCACATCTGAACTACTGAGG+TGG 0.588791 4:+75786264 None:intergenic
GAGGTCAATAAGAGGACTGG+AGG 0.591483 4:-75787142 MsG0480022717.01.T01:CDS
TAGAGCAGCTTACGTTGTTG+GGG 0.594589 4:-75786320 MsG0480022717.01.T01:CDS
TCAATAAGTGCAGTGACTGC+TGG 0.598945 4:-75786645 MsG0480022717.01.T01:CDS
TAAGAAGGAGAATGACATGA+TGG 0.614444 4:-75786945 MsG0480022717.01.T01:CDS
AAATTGAGGAGATTGTTGAG+AGG 0.621276 4:-75787596 MsG0480022717.01.T01:CDS
AAGTCTGGTTCAGGAGCAAG+TGG 0.621847 4:-75786501 MsG0480022717.01.T01:CDS
GTATAAGAATGATGTTGATG+AGG 0.625258 4:-75787161 MsG0480022717.01.T01:intron
CCATATATAATATGCTTGGG+AGG 0.626100 4:+75786375 None:intergenic
GTCAAAGATCTTCGTAAACA+CGG 0.631895 4:-75787949 MsG0480022717.01.T01:CDS
CTGAACCAGACTTAGGAGCA+CGG 0.640321 4:+75786511 None:intergenic
ATTTCACGGTCACCAGCAGA+CGG 0.640573 4:+75787615 None:intergenic
AGGTCAATAAGAGGACTGGA+GGG 0.644829 4:-75787141 MsG0480022717.01.T01:CDS
CCAAGCACATCATGAACCAA+CGG 0.646610 4:+75787326 None:intergenic
CACGAAGCATTTGATGAATG+CGG 0.648032 4:-75787077 MsG0480022717.01.T01:CDS
ACATCTGAACTACTGAGGTG+GGG 0.648073 4:+75786266 None:intergenic
ACAGACAGCTAGCTTTGGCG+AGG 0.674437 4:-75786599 MsG0480022717.01.T01:CDS
CGTTACCTGAGCTGACTGAG+AGG 0.681656 4:-75787048 MsG0480022717.01.T01:CDS
CATTCACATCTGAACTACTG+AGG 0.684802 4:+75786261 None:intergenic
AACGGTGCTGAGAGAGTGTG+AGG 0.703297 4:-75786787 MsG0480022717.01.T01:CDS
GACTGGAGGGAATCACGGTG+CGG 0.708144 4:-75787128 MsG0480022717.01.T01:CDS
GAGCACGGGGATCAAAAGCG+AGG 0.710613 4:+75786526 None:intergenic
GAACCAGACTTAGGAGCACG+GGG 0.729204 4:+75786513 None:intergenic
TGTTGGGTGAGATCAAGGAG+AGG 0.746514 4:-75786985 MsG0480022717.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAATAATTTGTTTACTGA+AGG - Chr4:75787061-75787080 MsG0480022717.01.T01:CDS 15.0%
! AAAACAATTGCTTCCTTAAA+TGG + Chr4:75788047-75788066 None:intergenic 25.0%
! AATGATGAAGAGATTGAAAA+TGG + Chr4:75786379-75786398 None:intergenic 25.0%
! AATTGGTTGAACGAAATAAA+CGG + Chr4:75786637-75786656 None:intergenic 25.0%
! AGATCTTTGACATGAATTAA+TGG + Chr4:75786548-75786567 None:intergenic 25.0%
! GTTCCATATATAATATGCTT+GGG + Chr4:75788137-75788156 None:intergenic 25.0%
!! GCATTCTGAAAATTTGAAAA+TGG + Chr4:75786411-75786430 None:intergenic 25.0%
!! TTGAGGATAATTGTTTTCAT+TGG - Chr4:75786836-75786855 MsG0480022717.01.T01:intron 25.0%
!!! AATAATTTGTTTACTGAAGG+TGG - Chr4:75787064-75787083 MsG0480022717.01.T01:CDS 25.0%
!!! ATAATTTGTTTACTGAAGGT+GGG - Chr4:75787065-75787084 MsG0480022717.01.T01:CDS 25.0%
AGAGATTGAAAATGGAATTG+AGG + Chr4:75786371-75786390 None:intergenic 30.0%
ATTGTTGAGAGGATTGTTAA+TGG - Chr4:75786921-75786940 MsG0480022717.01.T01:CDS 30.0%
CATCATGTATCTGATTTCAT+CGG - Chr4:75787662-75787681 MsG0480022717.01.T01:intron 30.0%
CCATTTAAAAGGTCCATTTA+AGG - Chr4:75788031-75788050 MsG0480022717.01.T01:CDS 30.0%
CGTTCCATATATAATATGCT+TGG + Chr4:75788138-75788157 None:intergenic 30.0%
GAGATTGAAAATGGAATTGA+GGG + Chr4:75786370-75786389 None:intergenic 30.0%
GTATAAGAATGATGTTGATG+AGG - Chr4:75787345-75787364 MsG0480022717.01.T01:CDS 30.0%
TTGTTGAGAGGATTGTTAAT+GGG - Chr4:75786922-75786941 MsG0480022717.01.T01:CDS 30.0%
! ATTTTGTTAGTTCCTTTCAG+AGG - Chr4:75787089-75787108 MsG0480022717.01.T01:CDS 30.0%
! CAGAAGTAATATTGTTGACT+GGG - Chr4:75787818-75787837 MsG0480022717.01.T01:intron 30.0%
! CCTTAAATGGACCTTTTAAA+TGG + Chr4:75788034-75788053 None:intergenic 30.0%
! GAAGCAATTGTTTTCATGAT+TGG - Chr4:75788053-75788072 MsG0480022717.01.T01:CDS 30.0%
!! TTAATGGGTGTTTTGTGTTT+TGG - Chr4:75786937-75786956 MsG0480022717.01.T01:CDS 30.0%
AAATTGAGGAGATTGTTGAG+AGG - Chr4:75786910-75786929 MsG0480022717.01.T01:intron 35.0%
AACCTAAACCAACCAATAAC+AGG - Chr4:75786446-75786465 MsG0480022717.01.T01:CDS 35.0%
AACTATTAATCCGACTGAAG+TGG - Chr4:75787686-75787705 MsG0480022717.01.T01:intron 35.0%
AATCTTCGTCAGAAACAAAC+AGG - Chr4:75786328-75786347 MsG0480022717.01.T01:CDS 35.0%
AGAATGACATGATGGTTAGA+GGG - Chr4:75787569-75787588 MsG0480022717.01.T01:CDS 35.0%
ATTGAAAGGAGTGAACTTCT+CGG - Chr4:75787595-75787614 MsG0480022717.01.T01:CDS 35.0%
CAACAATCTCCTCAATTTCA+CGG + Chr4:75786908-75786927 None:intergenic 35.0%
CCATATATAATATGCTTGGG+AGG + Chr4:75788134-75788153 None:intergenic 35.0%
CCTATCAAAAACACACAAAC+CGG + Chr4:75787115-75787134 None:intergenic 35.0%
CCTCCCAAGCATATTATATA+TGG - Chr4:75788131-75788150 MsG0480022717.01.T01:intron 35.0%
CGATGAAATCAGATACATGA+TGG + Chr4:75787664-75787683 None:intergenic 35.0%
GACAGAATTTGTCGTAGATA+AGG + Chr4:75786511-75786530 None:intergenic 35.0%
GCAGAAGTAATATTGTTGAC+TGG - Chr4:75787817-75787836 MsG0480022717.01.T01:intron 35.0%
GCTTGATTCATATGCTAAGA+AGG - Chr4:75787546-75787565 MsG0480022717.01.T01:intron 35.0%
GTCAAAGATCTTCGTAAACA+CGG - Chr4:75786557-75786576 MsG0480022717.01.T01:CDS 35.0%
TAACATTGCTACTGTGTTGT+TGG - Chr4:75787504-75787523 MsG0480022717.01.T01:intron 35.0%
TAAGAAGGAGAATGACATGA+TGG - Chr4:75787561-75787580 MsG0480022717.01.T01:CDS 35.0%
TAAGTCTCTGAATGTTTCGT+TGG - Chr4:75787776-75787795 MsG0480022717.01.T01:intron 35.0%
TACATATCTGTCTCAGGATT+TGG + Chr4:75787960-75787979 None:intergenic 35.0%
TCGATGTTGAGAAATTGAGA+TGG + Chr4:75786715-75786734 None:intergenic 35.0%
TTCAGCATGACTTTAGGTAT+AGG - Chr4:75787157-75787176 MsG0480022717.01.T01:CDS 35.0%
! AACATTGCTACTGTGTTGTT+GGG - Chr4:75787505-75787524 MsG0480022717.01.T01:intron 35.0%
! ATGTTGATGAGGTCAATAAG+AGG - Chr4:75787356-75787375 MsG0480022717.01.T01:CDS 35.0%
! ATTGTTTTCATGATTGGTGG+TGG - Chr4:75788059-75788078 MsG0480022717.01.T01:CDS 35.0%
! GCAATTGTTTTCATGATTGG+TGG - Chr4:75788056-75788075 MsG0480022717.01.T01:CDS 35.0%
! GTTGTTGTTGTTCCTGTTAT+TGG + Chr4:75786461-75786480 None:intergenic 35.0%
! TCGTTGAACATGGATTGAAT+TGG + Chr4:75786654-75786673 None:intergenic 35.0%
! TGAATAGGTTGAGTGTTCAA+GGG - Chr4:75787211-75787230 MsG0480022717.01.T01:intron 35.0%
! TTGAATAGGTTGAGTGTTCA+AGG - Chr4:75787210-75787229 MsG0480022717.01.T01:intron 35.0%
! TTGTTGTTCCTGTTATTGGT+TGG + Chr4:75786457-75786476 None:intergenic 35.0%
!! TCTTGAGTTTGTTACACTTG+AGG - Chr4:75786819-75786838 MsG0480022717.01.T01:intron 35.0%
!! TTCCTGTTATTGGTTGGTTT+AGG + Chr4:75786451-75786470 None:intergenic 35.0%
AATCTTAATGATCCGTCTGC+TGG - Chr4:75786879-75786898 MsG0480022717.01.T01:intron 40.0%
ACTGTTGAAGCCTTGATTGA+AGG - Chr4:75787930-75787949 MsG0480022717.01.T01:intron 40.0%
ATGCTTGAAGATCTTGCTTC+GGG - Chr4:75786746-75786765 MsG0480022717.01.T01:CDS 40.0%
ATTTGGTCTCCCTTCAATCA+AGG + Chr4:75787943-75787962 None:intergenic 40.0%
CTGTTGAAGCCTTGATTGAA+GGG - Chr4:75787931-75787950 MsG0480022717.01.T01:intron 40.0%
GAACCAAGATGGATAAGCTT+CGG - Chr4:75787635-75787654 MsG0480022717.01.T01:CDS 40.0%
GAAGCAAGATCTTCAAGCAT+CGG + Chr4:75786746-75786765 None:intergenic 40.0%
GAGAATGACATGATGGTTAG+AGG - Chr4:75787568-75787587 MsG0480022717.01.T01:CDS 40.0%
GATGCTTGAAGATCTTGCTT+CGG - Chr4:75786745-75786764 MsG0480022717.01.T01:CDS 40.0%
GCAAGTGGCAACCATTTAAA+AGG - Chr4:75788020-75788039 MsG0480022717.01.T01:CDS 40.0%
GTTTGCGATCTTTGTCAATG+AGG + Chr4:75786596-75786615 None:intergenic 40.0%
TATTAATCCGACTGAAGTGG+AGG - Chr4:75787689-75787708 MsG0480022717.01.T01:intron 40.0%
TGCGTTGGATCAAAGGATTA+GGG - Chr4:75787024-75787043 MsG0480022717.01.T01:CDS 40.0%
TGGGATGAGATCTTATGAGT+TGG - Chr4:75787242-75787261 MsG0480022717.01.T01:CDS 40.0%
TGGTTGAACGAAATAAACGG+CGG + Chr4:75786634-75786653 None:intergenic 40.0%
TTGCGATTCAGCATGACTTT+AGG - Chr4:75787151-75787170 MsG0480022717.01.T01:CDS 40.0%
! CACGAAGCATTTGATGAATG+CGG - Chr4:75787429-75787448 MsG0480022717.01.T01:intron 40.0%
! GAATAGGTTGAGTGTTCAAG+GGG - Chr4:75787212-75787231 MsG0480022717.01.T01:intron 40.0%
! TGATAGGAATTTTGAGCTGC+CGG - Chr4:75787128-75787147 MsG0480022717.01.T01:CDS 40.0%
! TTTGATGGGACGGATTTGAT+TGG - Chr4:75787403-75787422 MsG0480022717.01.T01:intron 40.0%
!! CCGGTTTGTGTGTTTTTGAT+AGG - Chr4:75787112-75787131 MsG0480022717.01.T01:CDS 40.0%
!! GACAGAACTTTTGACTGGAA+TGG - Chr4:75788157-75788176 MsG0480022717.01.T01:intron 40.0%
!! TGCTTGGGTTGAAGTTGAAT+AGG - Chr4:75787196-75787215 MsG0480022717.01.T01:intron 40.0%
!! TGGTTAGAGGGAGTATTGAA+AGG - Chr4:75787581-75787600 MsG0480022717.01.T01:CDS 40.0%
!!! ATTCGTTTTGGGTTGCAAAG+TGG - Chr4:75787274-75787293 MsG0480022717.01.T01:CDS 40.0%
!!! GGATAGTGCTGATTCGTTTT+GGG - Chr4:75787263-75787282 MsG0480022717.01.T01:CDS 40.0%
!!! TGGATAGTGCTGATTCGTTT+TGG - Chr4:75787262-75787281 MsG0480022717.01.T01:CDS 40.0%
!!! TTCGTTTTGGGTTGCAAAGT+GGG - Chr4:75787275-75787294 MsG0480022717.01.T01:CDS 40.0%
!!! TTTTGTGTTTTGGCTACGCT+TGG - Chr4:75786947-75786966 MsG0480022717.01.T01:CDS 40.0%
AAGTCATGCTGAATCGCAAC+CGG + Chr4:75787150-75787169 None:intergenic 45.0%
ACGTTGTTGGGGAAGAAGAT+GGG - Chr4:75788197-75788216 MsG0480022717.01.T01:exon 45.0%
AGGTCAATAAGAGGACTGGA+GGG - Chr4:75787365-75787384 MsG0480022717.01.T01:CDS 45.0%
CAACCGAAGCTTATCCATCT+TGG + Chr4:75787641-75787660 None:intergenic 45.0%
CCAAGCACATCATGAACCAA+CGG + Chr4:75787183-75787202 None:intergenic 45.0%
CTGAATCGAATCCGAAGCTA+TGG + Chr4:75786774-75786793 None:intergenic 45.0%
CTGACGAAGATTGAGAGACA+TGG + Chr4:75786320-75786339 None:intergenic 45.0%
CTGCGATGATTCGTTGAACA+TGG + Chr4:75786664-75786683 None:intergenic 45.0%
CTGCGTTGGATCAAAGGATT+AGG - Chr4:75787023-75787042 MsG0480022717.01.T01:CDS 45.0%
GATGAGGTCAATAAGAGGAC+TGG - Chr4:75787361-75787380 MsG0480022717.01.T01:CDS 45.0%
GGTTGAACGAAATAAACGGC+GGG + Chr4:75786633-75786652 None:intergenic 45.0%
GTAGAGCAGCTTACGTTGTT+GGG - Chr4:75788185-75788204 MsG0480022717.01.T01:CDS 45.0%
TACGTTGTTGGGGAAGAAGA+TGG - Chr4:75788196-75788215 MsG0480022717.01.T01:exon 45.0%
TAGAGCAGCTTACGTTGTTG+GGG - Chr4:75788186-75788205 MsG0480022717.01.T01:CDS 45.0%
TCAATAAGTGCAGTGACTGC+TGG - Chr4:75787861-75787880 MsG0480022717.01.T01:intron 45.0%
TGACTGTCCATAGAGCTTCT+CGG + Chr4:75787844-75787863 None:intergenic 45.0%
TGACTTTAGGTATAGGCCGT+TGG - Chr4:75787164-75787183 MsG0480022717.01.T01:intron 45.0%
TGCTTGAAGATCTTGCTTCG+GGG - Chr4:75786747-75786766 MsG0480022717.01.T01:CDS 45.0%
TGTAGAGCAGCTTACGTTGT+TGG - Chr4:75788184-75788203 MsG0480022717.01.T01:CDS 45.0%
TGTTAGTTCCTTTCAGAGGC+CGG - Chr4:75787093-75787112 MsG0480022717.01.T01:CDS 45.0%
TTGAGTGTTCAAGGGGAGAA+AGG - Chr4:75787219-75787238 MsG0480022717.01.T01:intron 45.0%
TTGCTACTGCGTTGGATCAA+AGG - Chr4:75787017-75787036 MsG0480022717.01.T01:CDS 45.0%
! AAGATGGGTTTGGGTAATGC+TGG - Chr4:75788212-75788231 MsG0480022717.01.T01:five_prime_UTR 45.0%
! GGAACGACAGAACTTTTGAC+TGG - Chr4:75788152-75788171 MsG0480022717.01.T01:intron 45.0%
! TAGTGACAGACAGCTAGCTT+TGG - Chr4:75787902-75787921 MsG0480022717.01.T01:intron 45.0%
! TGTGTTGTTGGGTGAGATCA+AGG - Chr4:75787516-75787535 MsG0480022717.01.T01:intron 45.0%
! TTGGGGAAGAAGATGGGTTT+GGG - Chr4:75788203-75788222 MsG0480022717.01.T01:exon 45.0%
!! CGTTGGTTCATGATGTGCTT+GGG - Chr4:75787181-75787200 MsG0480022717.01.T01:intron 45.0%
!! TTGGTGTTGTGCCGGTTATT+AGG - Chr4:75786966-75786985 MsG0480022717.01.T01:CDS 45.0%
!!! TTTTGGGTTGCAAAGTGGGT+TGG - Chr4:75787279-75787298 MsG0480022717.01.T01:CDS 45.0%
AAGAGGACTGGAGGGAATCA+CGG - Chr4:75787373-75787392 MsG0480022717.01.T01:CDS 50.0%
AATCACGGTGCGGAGTTTGA+TGG - Chr4:75787388-75787407 MsG0480022717.01.T01:intron 50.0%
AGTGTTCAAGGGGAGAAAGG+TGG - Chr4:75787222-75787241 MsG0480022717.01.T01:intron 50.0%
ATCACGGTGCGGAGTTTGAT+GGG - Chr4:75787389-75787408 MsG0480022717.01.T01:intron 50.0%
ATTTCACGGTCACCAGCAGA+CGG + Chr4:75786894-75786913 None:intergenic 50.0%
CTGAACCAGACTTAGGAGCA+CGG + Chr4:75787998-75788017 None:intergenic 50.0%
CTTGCTCCTGAACCAGACTT+AGG + Chr4:75788005-75788024 None:intergenic 50.0%
GAGGTCAATAAGAGGACTGG+AGG - Chr4:75787364-75787383 MsG0480022717.01.T01:CDS 50.0%
GCGAGGTACATATCTGTCTC+AGG + Chr4:75787966-75787985 None:intergenic 50.0%
GTGTTCAAGGGGAGAAAGGT+GGG - Chr4:75787223-75787242 MsG0480022717.01.T01:intron 50.0%
GTTGGAGTTTCCTGAGGTTG+CGG - Chr4:75787297-75787316 MsG0480022717.01.T01:CDS 50.0%
TGAAGTGGAGGCTGTGGAAA+CGG - Chr4:75787701-75787720 MsG0480022717.01.T01:intron 50.0%
TGAGATGGTTGCTACTGCGT+TGG - Chr4:75787009-75787028 MsG0480022717.01.T01:CDS 50.0%
TGCTGGTGACCGTGAAATTG+AGG - Chr4:75786896-75786915 MsG0480022717.01.T01:intron 50.0%
TGTTGGGTGAGATCAAGGAG+AGG - Chr4:75787521-75787540 MsG0480022717.01.T01:intron 50.0%
TTATTAGGTGTCCGCGTGGT+GGG - Chr4:75786981-75787000 MsG0480022717.01.T01:CDS 50.0%
! AACTTCTCGGTGTGCTGAGA+GGG - Chr4:75787608-75787627 MsG0480022717.01.T01:CDS 50.0%
! AAGTCTGGTTCAGGAGCAAG+TGG - Chr4:75788005-75788024 MsG0480022717.01.T01:CDS 50.0%
! GTTGGGGAAGAAGATGGGTT+TGG - Chr4:75788202-75788221 MsG0480022717.01.T01:exon 50.0%
! TGAACCAGACTTAGGAGCAC+GGG + Chr4:75787997-75788016 None:intergenic 50.0%
!! AAGTGGGTTGGAGTTTCCTG+AGG - Chr4:75787291-75787310 MsG0480022717.01.T01:CDS 50.0%
!! AGATCTTCAAGCATCGGACG+AGG + Chr4:75786740-75786759 None:intergenic 50.0%
!! CCGTTGGTTCATGATGTGCT+TGG - Chr4:75787180-75787199 MsG0480022717.01.T01:intron 50.0%
AACGGCGGGAACATCGTGAA+CGG + Chr4:75786619-75786638 None:intergenic 55.0%
CACACAAACCGGCCTCTGAA+AGG + Chr4:75787104-75787123 None:intergenic 55.0%
CCACGCGGACACCTAATAAC+CGG + Chr4:75786980-75786999 None:intergenic 55.0%
CGTTACCTGAGCTGACTGAG+AGG - Chr4:75787458-75787477 MsG0480022717.01.T01:intron 55.0%
GAGAGGGAAGGGAACCAAGA+TGG - Chr4:75787624-75787643 MsG0480022717.01.T01:CDS 55.0%
GCAGTAGCAACCATCTCAGC+CGG + Chr4:75787007-75787026 None:intergenic 55.0%
GTTATTAGGTGTCCGCGTGG+TGG - Chr4:75786980-75786999 MsG0480022717.01.T01:CDS 55.0%
TCAATCTCCACCGCAACCTC+AGG + Chr4:75787310-75787329 None:intergenic 55.0%
TCCACAGCCTCCACTTCAGT+CGG + Chr4:75787699-75787718 None:intergenic 55.0%
TGCTTCCTCTCAGTCAGCTC+AGG + Chr4:75787466-75787485 None:intergenic 55.0%
TGCTTCGGGGACCATAGCTT+CGG - Chr4:75786760-75786779 MsG0480022717.01.T01:CDS 55.0%
! AACGGTGCTGAGAGAGTGTG+AGG - Chr4:75787719-75787738 MsG0480022717.01.T01:intron 55.0%
! CGTGCTCCTAAGTCTGGTTC+AGG - Chr4:75787996-75788015 MsG0480022717.01.T01:CDS 55.0%
! GAACCAGACTTAGGAGCACG+GGG + Chr4:75787996-75788015 None:intergenic 55.0%
! GAACTTCTCGGTGTGCTGAG+AGG - Chr4:75787607-75787626 MsG0480022717.01.T01:CDS 55.0%
!! ACAGACAGCTAGCTTTGGCG+AGG - Chr4:75787907-75787926 MsG0480022717.01.T01:intron 55.0%
ACGGCGGGAACATCGTGAAC+GGG + Chr4:75786618-75786637 None:intergenic 60.0%
CCGGTTATTAGGTGTCCGCG+TGG - Chr4:75786977-75786996 MsG0480022717.01.T01:CDS 60.0%
CGGTGCGGAGTTTGATGGGA+CGG - Chr4:75787393-75787412 MsG0480022717.01.T01:intron 60.0%
GACTGGAGGGAATCACGGTG+CGG - Chr4:75787378-75787397 MsG0480022717.01.T01:intron 60.0%
GACTGGGCCGAGAAGCTCTA+TGG - Chr4:75787834-75787853 MsG0480022717.01.T01:intron 60.0%
GAGCACGGGGATCAAAAGCG+AGG + Chr4:75787983-75788002 None:intergenic 60.0%
GATCCCCGTGCTCCTAAGTC+TGG - Chr4:75787990-75788009 MsG0480022717.01.T01:CDS 60.0%
GGAGTTTCCTGAGGTTGCGG+TGG - Chr4:75787300-75787319 MsG0480022717.01.T01:CDS 60.0%
TCCGACTGAAGTGGAGGCTG+TGG - Chr4:75787695-75787714 MsG0480022717.01.T01:intron 60.0%
! CTCGGTGTGCTGAGAGGGAA+GGG - Chr4:75787613-75787632 MsG0480022717.01.T01:CDS 60.0%
! TCTCGGTGTGCTGAGAGGGA+AGG - Chr4:75787612-75787631 MsG0480022717.01.T01:CDS 60.0%
!! GGCTACGCTTGGTGTTGTGC+CGG - Chr4:75786958-75786977 MsG0480022717.01.T01:CDS 60.0%
ATCTCAGCCGGCCCACCACG+CGG + Chr4:75786995-75787014 None:intergenic 70.0%
!! TAGGTGTCCGCGTGGTGGGC+CGG - Chr4:75786985-75787004 MsG0480022717.01.T01:CDS 70.0%
!! GCGTGGTGGGCCGGCTGAGA+TGG - Chr4:75786994-75787013 MsG0480022717.01.T01:CDS 75.0%
Chromosome Type Strat End Strand Name
Chr4 gene 75786275 75788253 75786275 ID=MsG0480022717.01;Name=MsG0480022717.01
Chr4 mRNA 75786275 75788253 75786275 ID=MsG0480022717.01.T01;Parent=MsG0480022717.01;Name=MsG0480022717.01.T01;_AED=0.27;_eAED=0.27;_QI=44|0.2|0.16|1|0.2|0.16|6|0|425
Chr4 exon 75786275 75786822 75786275 ID=MsG0480022717.01.T01:exon:3303;Parent=MsG0480022717.01.T01
Chr4 exon 75786912 75787176 75786912 ID=MsG0480022717.01.T01:exon:3302;Parent=MsG0480022717.01.T01
Chr4 exon 75787232 75787394 75787232 ID=MsG0480022717.01.T01:exon:3301;Parent=MsG0480022717.01.T01
Chr4 exon 75787549 75787664 75787549 ID=MsG0480022717.01.T01:exon:3300;Parent=MsG0480022717.01.T01
Chr4 exon 75787948 75788102 75787948 ID=MsG0480022717.01.T01:exon:3299;Parent=MsG0480022717.01.T01
Chr4 exon 75788179 75788253 75788179 ID=MsG0480022717.01.T01:exon:3298;Parent=MsG0480022717.01.T01
Chr4 five_prime_UTR 75788210 75788253 75788210 ID=MsG0480022717.01.T01:five_prime_utr;Parent=MsG0480022717.01.T01
Chr4 CDS 75788179 75788209 75788179 ID=MsG0480022717.01.T01:cds;Parent=MsG0480022717.01.T01
Chr4 CDS 75787948 75788102 75787948 ID=MsG0480022717.01.T01:cds;Parent=MsG0480022717.01.T01
Chr4 CDS 75787549 75787664 75787549 ID=MsG0480022717.01.T01:cds;Parent=MsG0480022717.01.T01
Chr4 CDS 75787232 75787394 75787232 ID=MsG0480022717.01.T01:cds;Parent=MsG0480022717.01.T01
Chr4 CDS 75786912 75787176 75786912 ID=MsG0480022717.01.T01:cds;Parent=MsG0480022717.01.T01
Chr4 CDS 75786275 75786822 75786275 ID=MsG0480022717.01.T01:cds;Parent=MsG0480022717.01.T01
Gene Sequence

>MsG0480022717.01.T01

ATGTCTCTCAATCTTCGTCAGAAACAAACAGAATGCATCGCACGAATGTTAAACCTAAACCAACCAATAACAGGAACAACAACAACAACAACGAATGAAGAAGCATACAAGATCCTTATCTACGACAAATTCTGTCAAAACATTCTCTCACCATTAATTCATGTCAAAGATCTTCGTAAACACGGTAAATCTTGCTTTTTGAATCTTAATGATCCGTCTGCTGGTGACCGTGAAATTGAGGAGATTGTTGAGAGGATTGTTAATGGGTGTTTTGTGTTTTGGCTACGCTTGGTGTTGTGCCGGAATTTTGAGCTGCCGGTTGCGATTCAGCATGACTTTAGGTATAGGCCGTTGGTTCATGATGTGCTTGGGTTGAAGTTGAATAGGTTGAGTGTTCAAGGGGAGAAAGGTGGGATGAGATCTTATGAGTTGGATAGTGCTGATTCGTTTTGGGTTGCAAAGTGGAATGATGTTGATGAGGTCAATAAGAGGACTGGAGGGAATCACGGTGCGGAGTTTGATGGGACGGATTTGATTGGTAACACGAAGCATTTGATGAATGCGGTGAACTCGTTACCTGAGCTGACTGAGAGGAAGCAAGTGATTGATAAGCATACTAACATTGCTACTGTGTTGTTGGGTGAGATCAAGGAGAGGTCGCTTGATTCATATGCTAAGAAGGAGAATGACATGATGGTTAGAGGGAGTATTGAAAGGAGTGAACTTCTCGTGGAGGCTGTGGAAACGGTGCTGAGAGAGTGTGAGGTTGATACTGCTGCTTTTCAGTATGTGAAAAAGATTAAGTCTCTGAATGTTTCGTTGGCTAATGCAAATTCTGCTAGCAGAAGTAATATTGTTGACTGGGCCGAGAAGCTCTATGGACAGTCAATAAGTGCAGTGACTGCTGGTGTCAAAAATCTGTTATCTAGTGACAGACAGCTAGCTTTGGCGAGGACTGTTGAAGCCTTGATTGAAGGGAGACCAAATCCTGAGACAGATATGTACCTCGCTTTTGATCCCCGTGCTCCTAAGTCTGGTTCAGGAGCAAGTGGCAACCATTTAAAAGGTCCATTTAAGGAAGCAATTGTTTTCATGATTGGTGGTGGTAATTATGTTGAATATTGTAGTCTGCAAGAGCTTGCTCAAAATCAGCAGCCTCCCAAGCATATTATATATGGAACGACAGAACTTTTGACTGGAATGGACTTTGTAGAGCAGCTTACGTTGTTGGGGAAGAAGATGGGTTTGGGTAATGCTGGTTCTGCCCCACCTCAGTAG

Protein sequence

>MsG0480022717.01.T01

MSLNLRQKQTECIARMLNLNQPITGTTTTTTNEEAYKILIYDKFCQNILSPLIHVKDLRKHGKSCFLNLNDPSAGDREIEEIVERIVNGCFVFWLRLVLCRNFELPVAIQHDFRYRPLVHDVLGLKLNRLSVQGEKGGMRSYELDSADSFWVAKWNDVDEVNKRTGGNHGAEFDGTDLIGNTKHLMNAVNSLPELTERKQVIDKHTNIATVLLGEIKERSLDSYAKKENDMMVRGSIERSELLVEAVETVLRECEVDTAAFQYVKKIKSLNVSLANANSASRSNIVDWAEKLYGQSISAVTAGVKNLLSSDRQLALARTVEALIEGRPNPETDMYLAFDPRAPKSGSGASGNHLKGPFKEAIVFMIGGGNYVEYCSLQELAQNQQPPKHIIYGTTELLTGMDFVEQLTLLGKKMGLGNAGSAPPQ*