AlfalfaGEDB | MsG0880042944.01

M. sativa cultivar ZhongmuNo.1 / MsG0880042944.01

KEGG: -
GO: GO:0007165
PFAM: PF00620 PF00786

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042944.01.T01	XP_003627492.2	84.306	497	32	4	1	456	1	492	0	787

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042944.01.T01	Q8GYY5	52.083	480	173	13	1	456	1	447	2.23E-146	428

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042944.01.T01	G7L9Z1	84.306	497	32	4	1	456	1	492	0.0	787

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180000295.01	MsG0880042944.01	0.824458	7.983905e-54	7.075378e-51
MsG0180000836.01	MsG0880042944.01	0.803971	2.702632e-49	1.376870e-46
MsG0180001117.01	MsG0880042944.01	0.813644	2.305468e-51	1.514031e-48
MsG0180001173.01	MsG0880042944.01	0.824211	9.125443e-54	8.030788e-51
MsG0180001566.01	MsG0880042944.01	0.810132	1.341964e-50	8.024349e-48
MsG0180003455.01	MsG0880042944.01	0.823010	1.743369e-53	1.483158e-50
MsG0180004754.01	MsG0880042944.01	0.811105	8.267033e-51	5.072650e-48
MsG0180005049.01	MsG0880042944.01	0.800630	1.317247e-48	6.163414e-46
MsG0180005443.01	MsG0880042944.01	0.832213	1.074830e-55	1.193296e-52
MsG0180005445.01	MsG0880042944.01	0.810070	1.383801e-50	8.261319e-48

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042944.01.T01	MTR_8g026680	84.306	497	32	4	1	456	1	492	0.0	787
MsG0880042944.01.T01	MTR_7g104900	66.154	260	77	2	87	335	69	328	1.59e-123	368
MsG0880042944.01.T01	MTR_1g089500	61.149	296	98	3	76	354	23	318	2.17e-122	365
MsG0880042944.01.T01	MTR_2g086580	64.815	270	82	3	84	340	42	311	4.01e-119	356
MsG0880042944.01.T01	MTR_4g052850	57.483	294	100	4	84	366	65	344	1.12e-114	341
MsG0880042944.01.T01	MTR_7g107560	65.251	259	74	3	92	334	32	290	5.72e-108	327
MsG0880042944.01.T01	MTR_7g081615	59.494	158	56	1	153	302	14	171	4.45e-61	197
MsG0880042944.01.T01	MTR_5g064420	53.757	173	60	3	134	296	33	195	5.94e-53	178

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042944.01.T01	AT2G46710	52.083	480	173	13	1	456	1	447	2.27e-147	428
MsG0880042944.01.T01	AT5G22400	66.154	260	78	1	86	335	87	346	4.83e-124	369
MsG0880042944.01.T01	AT3G11490	61.168	291	97	2	90	364	67	357	4.68e-122	363
MsG0880042944.01.T01	AT4G03100	63.941	269	75	3	87	333	39	307	3.09e-120	358
MsG0880042944.01.T01	AT1G08340	65.106	235	64	2	114	334	1	231	3.29e-109	326

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Find 100 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGAAGAGTTTGGTTGAG+AGG	0.509274	8:+16386838	None:intergenic
AACAAAGGGATAGTGCCACA+TGG	0.638676	8:-16385001	MsG0880042944.01.T01:CDS
AAGATTGCTCTCACATAGCA+TGG	0.632661	8:-16383695	MsG0880042944.01.T01:CDS
AATGAAGAGTTTGGTTGAGA+GGG	0.486933	8:+16386839	None:intergenic
AATGGAGCGTAGAGAAACTT+CGG	0.589113	8:-16383528	MsG0880042944.01.T01:CDS
ACCTCAGGCTGAAACTCAGA+AGG	0.584588	8:+16386203	None:intergenic
ACGGCGTGCGCAAGTTATGC+AGG	0.495303	8:-16383361	MsG0880042944.01.T01:CDS
ACTTGAATGAAAATGTGATA+TGG	0.353168	8:+16386755	None:intergenic
AGAAGAGCAGCTTCTGTGGA+AGG	0.535601	8:+16384315	None:intergenic
AGAAGCTGCTCTTCTTGACT+GGG	0.576970	8:-16384307	MsG0880042944.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGCTGATGTAGATATTAAC+AGG	-	Chr8:16384449-16384468	MsG0880042944.01.T01:intron	30.0%
AGTGTTCTTATGATGATAGA+GGG	-	Chr8:16384881-16384900	MsG0880042944.01.T01:intron	30.0%
ATCGATGTTCATTGTTTATC+CGG	-	Chr8:16385157-16385176	MsG0880042944.01.T01:intron	30.0%
CAAAAGCAATTGTATTCTGA+AGG	-	Chr8:16384934-16384953	MsG0880042944.01.T01:intron	30.0%
CTACCAAAAGAAAATTCTCA+AGG	-	Chr8:16386561-16386580	MsG0880042944.01.T01:CDS	30.0%
CTATATCCAATATTGCAAAC+TGG	+	Chr8:16383771-16383790	None:intergenic	30.0%
GCTCATAATTTACTGATAAG+TGG	-	Chr8:16385329-16385348	MsG0880042944.01.T01:intron	30.0%
GGGAAATTATGAAAGACAAT+TGG	+	Chr8:16383278-16383297	None:intergenic	30.0%
GTTTCAAGACAATTCACAAA+AGG	-	Chr8:16383724-16383743	MsG0880042944.01.T01:CDS	30.0%
TAAAAAATTTACCTGGCACT+AGG	+	Chr8:16383970-16383989	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	16383268	16386888	16383268	ID=MsG0880042944.01;Name=MsG0880042944.01
Chr8	mRNA	16383268	16386888	16383268	ID=MsG0880042944.01.T01;Parent=MsG0880042944.01;Name=MsG0880042944.01.T01;_AED=0.31;_eAED=0.32;_QI=246\|0.6\|0.33\|1\|1\|1\|6\|0\|456
Chr8	exon	16383268	16383406	16383268	ID=MsG0880042944.01.T01:exon:4319;Parent=MsG0880042944.01.T01
Chr8	exon	16383499	16383824	16383499	ID=MsG0880042944.01.T01:exon:4318;Parent=MsG0880042944.01.T01
Chr8	exon	16384212	16384442	16384212	ID=MsG0880042944.01.T01:exon:4317;Parent=MsG0880042944.01.T01
Chr8	exon	16384967	16385115	16384967	ID=MsG0880042944.01.T01:exon:4316;Parent=MsG0880042944.01.T01
Chr8	exon	16385249	16385310	16385249	ID=MsG0880042944.01.T01:exon:4315;Parent=MsG0880042944.01.T01
Chr8	exon	16386179	16386888	16386179	ID=MsG0880042944.01.T01:exon:4314;Parent=MsG0880042944.01.T01
Chr8	five_prime_UTR	16386643	16386888	16386643	ID=MsG0880042944.01.T01:five_prime_utr;Parent=MsG0880042944.01.T01
Chr8	CDS	16386179	16386642	16386179	ID=MsG0880042944.01.T01:cds;Parent=MsG0880042944.01.T01
Chr8	CDS	16385249	16385310	16385249	ID=MsG0880042944.01.T01:cds;Parent=MsG0880042944.01.T01
Chr8	CDS	16384967	16385115	16384967	ID=MsG0880042944.01.T01:cds;Parent=MsG0880042944.01.T01
Chr8	CDS	16384212	16384442	16384212	ID=MsG0880042944.01.T01:cds;Parent=MsG0880042944.01.T01
Chr8	CDS	16383499	16383824	16383499	ID=MsG0880042944.01.T01:cds;Parent=MsG0880042944.01.T01
Chr8	CDS	16383268	16383406	16383268	ID=MsG0880042944.01.T01:cds;Parent=MsG0880042944.01.T01

Gene Sequence

>MsG0880042944.01.T01

ATGACTCGCCTTTTTCGATCAAAATCATGCAACATAGCTGGTTTCAGTGTGTCTGAATTCAACCCTGTTGCACAAGTAACCATCAACAAGAAGAAAGATGAACAACAAGAACAAGAAGAGGAAGAAGAAGAAGAAGAAGAACTAGAAAGTGATGACAATGACAATGATGATGATGATGATGAGGAATATGAGAAATATTCAAGCAATAATGTTTCAAGACAATTCACAAAAGGATCCAACAACAATCATCAAAACCAGTTTGCAATATTGGATATAGTTGTTGCTGCTCTTAAGAAATCTATTGTAACTTGCAGTGTGGAGAGGGAAGATGTTTCTTCCTTGGATATTAGCTGGCCAACCGAAGTGAGACACGTGTCACATGTTACTTTTGATAGATTCAATGGTTTTCTTGGTTTGCCTTCTGAGTTTCAGCCTGAGGTTCCTACAAGAGTACCTAGTGCCAGTGTGAAGGTATTTGGAGTTTCTGCAAAGTCAATGCAGTGTTCTTATGATGATAGAGGGAACAGTCTAATTTCATGCTTTCCATGGATGAAGGCAGAAGGAATATTCCGCATTACTGCTGAGAATAGCCAAGAAGCATTCGTTCGAGATCAGTTAAACAAAGGGATAGTGCCACATGGAATCGATGTTCATTGTTTATCCGGCTTGATTAAGGCCTGGTTTAGAGAGCTTCCAACTGGTGTACTTGATTCTCTCACACCGGAGCAAGTGATGCAATGCAACACAGAAGATGATTGTACTAACCTTGTCAAGTTACTTCCTTCCACAGAAGCTGCTCTTCTTGACTGGGCAATCAATTTGATGGCCGATGTTGTTGAAAATGAACAGTTCAATAAGATGAATGCGCGCAACGTAGCTATGGTTTTCGCGCCCAACATGACACAGATGGCAGACCCCTTAACTGCATTGATTCATGCAGTACAAGTTATGAACTTCTTAAAGACATTGATTTTGAAGACGCTTCGAGAAAGAGAAGAATCGATTGATAATGCAAGATTGCTCTCACATAGCATGGACTTTGCCTCCTGCAATGATGAATTTCCTCCTTTCAACTTCAACAAAGAGGAGTCACCATGTGAACAAATTGAGGATGCTTGTGACAAAAACTCATCAACTACCAAAAGAAAATTCTCAAGGACTTCCACCTTAGGAAGAATAGAATGGAGCGTAGAGAAACTTCGGAGCTCCGAGGAAAAAGGAATCGAGACGAGCGAACATTGGTCACGATTGAGAAACGGCGTGCGCAAGTTATGCAGGCACCCGGTATTTCAATTGAGCAAGCCATCTAAGAAGCCTGCAAGTCTTGCCATTGTAAATACTAGGGAAGGAAGAGGAGAAGCTTGGGCTTGA

Protein sequence

>MsG0880042944.01.T01

MTRLFRSKSCNIAGFSVSEFNPVAQVTINKKKDEQQEQEEEEEEEEELESDDNDNDDDDDEEYEKYSSNNVSRQFTKGSNNNHQNQFAILDIVVAALKKSIVTCSVEREDVSSLDISWPTEVRHVSHVTFDRFNGFLGLPSEFQPEVPTRVPSASVKVFGVSAKSMQCSYDDRGNSLISCFPWMKAEGIFRITAENSQEAFVRDQLNKGIVPHGIDVHCLSGLIKAWFRELPTGVLDSLTPEQVMQCNTEDDCTNLVKLLPSTEAALLDWAINLMADVVENEQFNKMNARNVAMVFAPNMTQMADPLTALIHAVQVMNFLKTLILKTLREREESIDNARLLSHSMDFASCNDEFPPFNFNKEESPCEQIEDACDKNSSTTKRKFSRTSTLGRIEWSVEKLRSSEEKGIETSEHWSRLRNGVRKLCRHPVFQLSKPSKKPASLAIVNTREGRGEAWA*