Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023307.01.T01 | XP_013446789.2 | 100 | 178 | 0 | 0 | 1 | 178 | 9 | 186 | 3.58E-123 | 363 |
| MsG0480023307.01.T01 | XP_013446789.2 | 92.453 | 53 | 4 | 0 | 174 | 226 | 293 | 345 | 7.78E-20 | 97.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023307.01.T01 | Q9FYE5 | 78.667 | 150 | 32 | 0 | 29 | 178 | 1 | 150 | 3.00E-79 | 243 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023307.01.T01 | A0A1S2YFL2 | 88.571 | 175 | 17 | 1 | 4 | 178 | 12 | 183 | 8.30e-107 | 320 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047814.01 | MsG0480023307.01 | 0.826369 | 2.817409e-54 | 2.637162e-51 |
| MsG0080048058.01 | MsG0480023307.01 | 0.816138 | 6.452356e-52 | 4.534833e-49 |
| MsG0080048383.01 | MsG0480023307.01 | 0.830100 | 3.551306e-55 | 3.705087e-52 |
| MsG0080048461.01 | MsG0480023307.01 | 0.801356 | 9.359867e-49 | 4.460722e-46 |
| MsG0080048856.01 | MsG0480023307.01 | 0.807865 | 4.102396e-50 | 2.310433e-47 |
| MsG0180000001.01 | MsG0480023307.01 | 0.854194 | 1.447358e-61 | 3.207161e-58 |
| MsG0180000144.01 | MsG0480023307.01 | 0.803231 | 3.847969e-49 | 1.923382e-46 |
| MsG0180000195.01 | MsG0480023307.01 | 0.805011 | 1.639918e-49 | 8.581412e-47 |
| MsG0180000824.01 | MsG0480023307.01 | 0.827842 | 1.251295e-54 | 1.222272e-51 |
| MsG0180000836.01 | MsG0480023307.01 | 0.810939 | 8.980194e-51 | 5.486580e-48 |
| MsG0180001173.01 | MsG0480023307.01 | 0.849909 | 2.388985e-60 | 4.599540e-57 |
| MsG0180001237.01 | MsG0480023307.01 | 0.822238 | 2.636123e-53 | 2.193871e-50 |
| MsG0180001260.01 | MsG0480023307.01 | 0.808116 | 3.626771e-50 | 2.056249e-47 |
| MsG0180003932.01 | MsG0480023307.01 | 0.820070 | 8.327444e-53 | 6.522893e-50 |
| MsG0180004754.01 | MsG0480023307.01 | 0.811143 | 8.111509e-51 | 4.982176e-48 |
| MsG0180005049.01 | MsG0480023307.01 | 0.815918 | 7.226860e-52 | 5.048308e-49 |
| MsG0180005443.01 | MsG0480023307.01 | 0.801418 | 9.089720e-49 | 4.338719e-46 |
| MsG0180005575.01 | MsG0480023307.01 | 0.819840 | 9.402930e-53 | 7.317684e-50 |
| MsG0180006224.01 | MsG0480023307.01 | 0.805418 | 1.347872e-49 | 7.127273e-47 |
| MsG0280006376.01 | MsG0480023307.01 | 0.808511 | 2.987707e-50 | 1.711556e-47 |
| MsG0280011014.01 | MsG0480023307.01 | 0.809613 | 1.735164e-50 | 1.023616e-47 |
| MsG0280011388.01 | MsG0480023307.01 | 0.817485 | 3.218516e-52 | 2.346968e-49 |
| MsG0380013834.01 | MsG0480023307.01 | 0.813074 | 3.076461e-51 | 1.989176e-48 |
| MsG0380014667.01 | MsG0480023307.01 | 0.828455 | 8.903597e-55 | 8.854566e-52 |
| MsG0480019206.01 | MsG0480023307.01 | 0.807573 | 4.732960e-50 | 2.645295e-47 |
| MsG0480020780.01 | MsG0480023307.01 | 0.823988 | 1.029472e-53 | 9.002660e-51 |
| MsG0480021195.01 | MsG0480023307.01 | 0.804849 | 1.773152e-49 | 9.240523e-47 |
| MsG0480021796.01 | MsG0480023307.01 | 0.800352 | 1.500681e-48 | 6.972448e-46 |
| MsG0480022094.01 | MsG0480023307.01 | 0.806211 | 9.185474e-50 | 4.957025e-47 |
| MsG0480022228.01 | MsG0480023307.01 | 0.836156 | 1.103972e-56 | 1.379533e-53 |
| MsG0480022620.01 | MsG0480023307.01 | 0.816575 | 5.153013e-52 | 3.665049e-49 |
| MsG0480022825.01 | MsG0480023307.01 | 0.815853 | 7.472961e-52 | 5.210856e-49 |
| MsG0480023172.01 | MsG0480023307.01 | 0.818485 | 1.912213e-52 | 1.433271e-49 |
| MsG0480023221.01 | MsG0480023307.01 | 0.803484 | 3.409813e-49 | 1.715574e-46 |
| MsG0480023272.01 | MsG0480023307.01 | 0.939995 | 4.965952e-100 | 5.284895e-95 |
| MsG0480023307.01 | MsG0480023463.01 | 0.808436 | 3.099775e-50 | 1.772373e-47 |
| MsG0480023307.01 | MsG0480023755.01 | 0.839618 | 1.422305e-57 | 1.975012e-54 |
| MsG0480023307.01 | MsG0480023873.01 | 0.818232 | 2.182812e-52 | 1.624548e-49 |
| MsG0480023307.01 | MsG0580025661.01 | 0.800193 | 1.616537e-48 | 7.480262e-46 |
| MsG0480023307.01 | MsG0580027091.01 | 0.833991 | 3.878823e-56 | 4.542038e-53 |
| MsG0480023307.01 | MsG0580028060.01 | 0.801044 | 1.084168e-48 | 5.126726e-46 |
| MsG0480023307.01 | MsG0580028897.01 | 0.816708 | 4.811734e-52 | 3.434641e-49 |
| MsG0480023307.01 | MsG0580029127.01 | 0.807690 | 4.469723e-50 | 2.505851e-47 |
| MsG0480023307.01 | MsG0580029729.01 | 0.815802 | 7.671364e-52 | 5.342207e-49 |
| MsG0480023307.01 | MsG0580029926.01 | 0.806223 | 9.130208e-50 | 4.928761e-47 |
| MsG0480023307.01 | MsG0680030881.01 | 0.801887 | 7.284857e-49 | 3.518857e-46 |
| MsG0480023307.01 | MsG0680031549.01 | 0.803176 | 3.949665e-49 | 1.971516e-46 |
| MsG0480023307.01 | MsG0680033392.01 | 0.829097 | 6.228657e-55 | 6.311221e-52 |
| MsG0480023307.01 | MsG0680034739.01 | 0.800448 | 1.434127e-48 | 6.679383e-46 |
| MsG0480023307.01 | MsG0680035306.01 | 0.808210 | 3.463641e-50 | 1.968699e-47 |
| MsG0480023307.01 | MsG0680035888.01 | 0.820043 | 8.449531e-53 | 6.613419e-50 |
| MsG0480023307.01 | MsG0780036663.01 | 0.827797 | 1.283099e-54 | 1.251586e-51 |
| MsG0480023307.01 | MsG0780036943.01 | 0.801074 | 1.068850e-48 | 5.058014e-46 |
| MsG0480023307.01 | MsG0780037054.01 | 0.804278 | 2.332306e-49 | 1.197600e-46 |
| MsG0480023307.01 | MsG0780037093.01 | 0.800943 | 1.136706e-48 | 5.361316e-46 |
| MsG0480023307.01 | MsG0780037240.01 | 0.824640 | 7.232583e-54 | 6.444501e-51 |
| MsG0480023307.01 | MsG0780038051.01 | 0.805330 | 1.406569e-49 | 7.420808e-47 |
| MsG0480023307.01 | MsG0780038603.01 | 0.837476 | 5.084016e-57 | 6.611929e-54 |
| MsG0480023307.01 | MsG0780039170.01 | 0.809000 | 2.348980e-50 | 1.363053e-47 |
| MsG0480023307.01 | MsG0780039443.01 | 0.817375 | 3.407328e-52 | 2.477176e-49 |
| MsG0480023307.01 | MsG0780039717.01 | 0.829614 | 4.664658e-55 | 4.798830e-52 |
| MsG0480023307.01 | MsG0780039845.01 | 0.814749 | 1.314620e-51 | 8.895237e-49 |
| MsG0480023307.01 | MsG0780040044.01 | 0.824479 | 7.893402e-54 | 6.999690e-51 |
| MsG0480023307.01 | MsG0780040529.01 | 0.802353 | 5.840781e-49 | 2.855023e-46 |
| MsG0480023307.01 | MsG0780040926.01 | 0.852348 | 4.895659e-61 | 1.020039e-57 |
| MsG0480023307.01 | MsG0780041016.01 | 0.821110 | 4.804817e-53 | 3.873635e-50 |
| MsG0480023307.01 | MsG0780041482.01 | 0.801888 | 7.278763e-49 | 3.516093e-46 |
| MsG0480023307.01 | MsG0880042128.01 | 0.834319 | 3.211156e-56 | 3.797535e-53 |
| MsG0480023307.01 | MsG0880042520.01 | 0.800602 | 1.334594e-48 | 6.240128e-46 |
| MsG0480023307.01 | MsG0880042760.01 | 0.829611 | 4.672891e-55 | 4.806849e-52 |
| MsG0480023307.01 | MsG0880042829.01 | 0.831146 | 1.969231e-55 | 2.118513e-52 |
| MsG0480023307.01 | MsG0880042944.01 | 0.807240 | 5.568218e-50 | 3.085480e-47 |
| MsG0480023307.01 | MsG0880043479.01 | 0.802620 | 5.144953e-49 | 2.531968e-46 |
| MsG0480023307.01 | MsG0880043480.01 | 0.822328 | 2.511764e-53 | 2.095815e-50 |
| MsG0480023307.01 | MsG0880044782.01 | 0.818574 | 1.826243e-52 | 1.372090e-49 |
| MsG0480023307.01 | MsG0880045838.01 | 0.810397 | 1.176268e-50 | 7.082334e-48 |
| MsG0480023307.01 | MsG0880046027.01 | 0.840670 | 7.559976e-58 | 1.084633e-54 |
| MsG0480023307.01 | MsG0880046069.01 | 0.823767 | 1.160094e-53 | 1.008344e-50 |
| MsG0480023307.01 | MsG0880047470.01 | 0.805734 | 1.156813e-49 | 6.167429e-47 |
| MsG0480023307.01 | MsG0880047473.01 | 0.815106 | 1.095448e-51 | 7.483845e-49 |
| MsG0380015332.01 | MsG0480023307.01 | 0.815904 | 7.278173e-52 | 5.082236e-49 |
| MsG0380015435.01 | MsG0480023307.01 | 0.807534 | 4.823433e-50 | 2.693266e-47 |
| MsG0380015555.01 | MsG0480023307.01 | 0.800310 | 1.530659e-48 | 7.104370e-46 |
| MsG0380015944.01 | MsG0480023307.01 | 0.813407 | 2.599821e-51 | 1.696421e-48 |
| MsG0380016247.01 | MsG0480023307.01 | 0.860491 | 1.990787e-63 | 5.451883e-60 |
| MsG0380016387.01 | MsG0480023307.01 | 0.803703 | 3.071789e-49 | 1.554146e-46 |
| MsG0380016407.01 | MsG0480023307.01 | 0.800031 | 1.743787e-48 | 8.036070e-46 |
| MsG0380016505.01 | MsG0480023307.01 | 0.842683 | 2.226595e-58 | 3.401773e-55 |
| MsG0380016765.01 | MsG0480023307.01 | 0.810268 | 1.253987e-50 | 7.525068e-48 |
| MsG0380016970.01 | MsG0480023307.01 | 0.806021 | 1.007153e-49 | 5.408835e-47 |
| MsG0280007226.01 | MsG0480023307.01 | 0.810988 | 8.765651e-51 | 5.362653e-48 |
| MsG0280007452.01 | MsG0480023307.01 | 0.801941 | 7.100514e-49 | 3.434305e-46 |
| MsG0280007491.01 | MsG0480023307.01 | 0.837520 | 4.951616e-57 | 6.448837e-54 |
| MsG0280008614.01 | MsG0480023307.01 | 0.836104 | 1.137814e-56 | 1.419629e-53 |
| MsG0280008909.01 | MsG0480023307.01 | 0.831334 | 1.770151e-55 | 1.914972e-52 |
| MsG0280009748.01 | MsG0480023307.01 | 0.821847 | 3.247807e-53 | 2.673055e-50 |
| MsG0280010002.01 | MsG0480023307.01 | 0.810750 | 9.869797e-51 | 5.999277e-48 |
| MsG0280010109.01 | MsG0480023307.01 | 0.825286 | 5.092617e-54 | 4.621922e-51 |
| MsG0280010148.01 | MsG0480023307.01 | 0.800371 | 1.487448e-48 | 6.914330e-46 |
| MsG0280010489.01 | MsG0480023307.01 | 0.806477 | 8.070970e-50 | 4.385133e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023307.01.T01 | MTR_8g090130 | 100.000 | 150 | 0 | 0 | 29 | 178 | 1 | 150 | 9.22e-105 | 305 |
| MsG0480023307.01.T01 | MTR_8g090130 | 92.453 | 53 | 4 | 0 | 174 | 226 | 257 | 309 | 5.09e-24 | 97.8 |
| MsG0480023307.01.T01 | MTR_5g081710 | 73.571 | 140 | 37 | 0 | 39 | 178 | 8 | 147 | 7.57e-73 | 224 |
| MsG0480023307.01.T01 | MTR_5g081710 | 64.706 | 51 | 18 | 0 | 174 | 224 | 254 | 304 | 2.79e-14 | 70.9 |
| MsG0480023307.01.T01 | MTR_3g070000 | 74.265 | 136 | 35 | 0 | 43 | 178 | 28 | 163 | 8.26e-70 | 216 |
| MsG0480023307.01.T01 | MTR_3g070000 | 64.706 | 51 | 18 | 0 | 174 | 224 | 270 | 320 | 3.41e-13 | 67.8 |
| MsG0480023307.01.T01 | MTR_3g462070 | 68.794 | 141 | 44 | 0 | 38 | 178 | 8 | 148 | 1.71e-69 | 215 |
| MsG0480023307.01.T01 | MTR_3g462070 | 70.588 | 51 | 15 | 0 | 174 | 224 | 255 | 305 | 3.36e-15 | 73.6 |
| MsG0480023307.01.T01 | MTR_4g018760 | 65.909 | 132 | 45 | 0 | 47 | 178 | 20 | 151 | 2.70e-60 | 192 |
| MsG0480023307.01.T01 | MTR_4g018760 | 71.154 | 52 | 15 | 0 | 174 | 225 | 258 | 309 | 1.51e-16 | 77.4 |
| MsG0480023307.01.T01 | MTR_4g101860 | 58.394 | 137 | 57 | 0 | 42 | 178 | 55 | 191 | 8.23e-51 | 169 |
| MsG0480023307.01.T01 | MTR_3g072380 | 34.351 | 131 | 86 | 0 | 47 | 177 | 22 | 152 | 1.28e-23 | 95.1 |
| MsG0480023307.01.T01 | MTR_1g030320 | 34.351 | 131 | 86 | 0 | 47 | 177 | 21 | 151 | 1.07e-22 | 94.7 |
| MsG0480023307.01.T01 | MTR_3g072380 | 34.351 | 131 | 86 | 0 | 47 | 177 | 22 | 152 | 1.52e-22 | 94.0 |
| MsG0480023307.01.T01 | MTR_0011s0320 | 36.054 | 147 | 82 | 7 | 44 | 184 | 18 | 158 | 1.08e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023307.01.T01 | AT5G04160 | 78.667 | 150 | 32 | 0 | 29 | 178 | 1 | 150 | 3.06e-80 | 243 |
| MsG0480023307.01.T01 | AT5G04160 | 77.358 | 53 | 12 | 0 | 174 | 226 | 257 | 309 | 4.08e-20 | 87.0 |
| MsG0480023307.01.T01 | AT3G10290 | 78.621 | 145 | 31 | 0 | 34 | 178 | 52 | 196 | 6.28e-79 | 241 |
| MsG0480023307.01.T01 | AT3G10290 | 77.358 | 53 | 12 | 0 | 174 | 226 | 303 | 355 | 1.15e-19 | 86.7 |
| MsG0480023307.01.T01 | AT3G11320 | 76.471 | 136 | 32 | 0 | 43 | 178 | 14 | 149 | 1.78e-71 | 220 |
| MsG0480023307.01.T01 | AT3G11320 | 66.667 | 51 | 17 | 0 | 174 | 224 | 256 | 306 | 8.05e-14 | 69.7 |
| MsG0480023307.01.T01 | AT5G05820 | 74.265 | 136 | 35 | 0 | 43 | 178 | 14 | 149 | 5.31e-69 | 214 |
| MsG0480023307.01.T01 | AT5G05820 | 66.667 | 51 | 17 | 0 | 174 | 224 | 256 | 306 | 8.85e-14 | 69.3 |
| MsG0480023307.01.T01 | AT1G12500 | 50.888 | 169 | 83 | 0 | 10 | 178 | 29 | 197 | 1.04e-51 | 171 |
| MsG0480023307.01.T01 | AT1G21870 | 35.115 | 131 | 85 | 0 | 47 | 177 | 22 | 152 | 3.99e-23 | 95.9 |
| MsG0480023307.01.T01 | AT1G77610 | 34.752 | 141 | 91 | 1 | 38 | 177 | 6 | 146 | 1.39e-22 | 94.4 |
| MsG0480023307.01.T01 | AT5G57100 | 36.641 | 131 | 72 | 5 | 52 | 177 | 76 | 200 | 6.62e-11 | 61.2 |
| MsG0480023307.01.T01 | AT5G57100 | 36.641 | 131 | 72 | 5 | 52 | 177 | 76 | 200 | 6.65e-11 | 61.6 |
| MsG0480023307.01.T01 | AT5G25400 | 32.381 | 210 | 104 | 11 | 19 | 201 | 2 | 200 | 7.72e-11 | 61.2 |
| MsG0480023307.01.T01 | AT5G57100 | 36.641 | 131 | 72 | 5 | 52 | 177 | 76 | 200 | 7.82e-11 | 60.8 |
| MsG0480023307.01.T01 | AT4G32390 | 32.857 | 210 | 103 | 11 | 19 | 201 | 2 | 200 | 9.72e-11 | 60.8 |
Find 58 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGTACCTTATCTCAAATTA+TGG | 0.221981 | 4:-83579271 | MsG0480023307.01.T01:CDS |
| ATCAAGGTCACAGTTCTTAA+AGG | 0.247185 | 4:-83579143 | MsG0480023307.01.T01:CDS |
| CAATATCTCTCTCAAGTATT+TGG | 0.275503 | 4:-83579077 | MsG0480023307.01.T01:CDS |
| AATTATGTTAATCAGGTATT+AGG | 0.309168 | 4:-83577023 | MsG0480023307.01.T01:intron |
| CAATAAAAGTGACAGGGTTT+TGG | 0.309718 | 4:+83576955 | None:intergenic |
| GCTCTTGTTCCTGTTGTTGC+TGG | 0.312689 | 4:-83578953 | MsG0480023307.01.T01:CDS |
| GGCTACTCAGTTACTGTAAT+GGG | 0.394558 | 4:-83576924 | MsG0480023307.01.T01:CDS |
| AACATGAATTCTTTGTTGTT+TGG | 0.399155 | 4:+83579352 | None:intergenic |
| GGAGGAGGTGGAATCAAATC+AGG | 0.422337 | 4:-83579388 | MsG0480023307.01.T01:CDS |
| ACTTATTTATCATGATTTGA+TGG | 0.424401 | 4:-83576708 | MsG0480023307.01.T01:three_prime_UTR |
| AGGAAATTGAACTCATATAT+AGG | 0.433522 | 4:-83576665 | MsG0480023307.01.T01:three_prime_UTR |
| ATAGGATAGGAAGGCCTTGT+AGG | 0.443005 | 4:-83576647 | MsG0480023307.01.T01:three_prime_UTR |
| TTGCATACGGAGAAACAAAA+AGG | 0.447859 | 4:-83576896 | MsG0480023307.01.T01:CDS |
| TGACACATTGTGAGGAAGAT+TGG | 0.449241 | 4:+83579238 | None:intergenic |
| TGAAACCATAATTTGAGATA+AGG | 0.466205 | 4:+83579266 | None:intergenic |
| AAATACACGAGCATAACTAT+TGG | 0.473522 | 4:+83576843 | None:intergenic |
| CTTATTTATCATGATTTGAT+GGG | 0.474394 | 4:-83576707 | MsG0480023307.01.T01:three_prime_UTR |
| ATCATGATTTGATGGGATGA+TGG | 0.489832 | 4:-83576700 | MsG0480023307.01.T01:three_prime_UTR |
| GCCATGCCAATAAAAGTGAC+AGG | 0.492901 | 4:+83576948 | None:intergenic |
| ATGGCAACACCAGCAACAAC+AGG | 0.493877 | 4:+83578944 | None:intergenic |
| TTGCAAATCCAGGGAGGAGG+TGG | 0.497230 | 4:-83579400 | MsG0480023307.01.T01:intron |
| TGGCTACTCAGTTACTGTAA+TGG | 0.499480 | 4:-83576925 | MsG0480023307.01.T01:CDS |
| TTGTACCGTGACTAGGAGTA+GGG | 0.500637 | 4:-83576789 | MsG0480023307.01.T01:three_prime_UTR |
| TTTGTACCGTGACTAGGAGT+AGG | 0.509285 | 4:-83576790 | MsG0480023307.01.T01:three_prime_UTR |
| GTTTCTTTCAACCAAGCTGT+AGG | 0.516484 | 4:-83579052 | MsG0480023307.01.T01:CDS |
| CTCAACAGATGATTAAATCA+AGG | 0.523888 | 4:-83579159 | MsG0480023307.01.T01:CDS |
| ACATTATTTGTACCGTGACT+AGG | 0.525868 | 4:-83576796 | MsG0480023307.01.T01:three_prime_UTR |
| TGGAATCAAATCAGGGAAGA+TGG | 0.528633 | 4:-83579380 | MsG0480023307.01.T01:CDS |
| CAGGTATTAGGCAATGCAAA+AGG | 0.533740 | 4:-83577011 | MsG0480023307.01.T01:CDS |
| AAGGGCACGGTTAAAGAAAG+TGG | 0.535006 | 4:-83579822 | MsG0480023307.01.T01:CDS |
| CATGAGATCCAAAGGATCCA+TGG | 0.542594 | 4:-83579856 | MsG0480023307.01.T01:CDS |
| GCTGGTGTTGCCATTGCAAG+TGG | 0.549715 | 4:-83578935 | MsG0480023307.01.T01:CDS |
| CTTGATTTAATCATCTGTTG+AGG | 0.555444 | 4:+83579160 | None:intergenic |
| ATTGAACTCATATATAGGAT+AGG | 0.556882 | 4:-83576660 | MsG0480023307.01.T01:three_prime_UTR |
| AAAACATACCCCACTTGCAA+TGG | 0.557860 | 4:+83578925 | None:intergenic |
| CTGGTGTTGCCATTGCAAGT+GGG | 0.559180 | 4:-83578934 | MsG0480023307.01.T01:CDS |
| AACTCATATATAGGATAGGA+AGG | 0.560025 | 4:-83576656 | MsG0480023307.01.T01:three_prime_UTR |
| CTTTGGTACTCATCAAACAT+TGG | 0.563810 | 4:-83579310 | MsG0480023307.01.T01:CDS |
| ATCCATGGAAAATGAAAACA+AGG | 0.586176 | 4:-83579841 | MsG0480023307.01.T01:CDS |
| TGGTGTTGCCATTGCAAGTG+GGG | 0.597605 | 4:-83578933 | MsG0480023307.01.T01:intron |
| GTAATGGGAGTTATTGCATA+CGG | 0.599804 | 4:-83576909 | MsG0480023307.01.T01:CDS |
| AGGGCACGGTTAAAGAAAGT+GGG | 0.600109 | 4:-83579821 | MsG0480023307.01.T01:CDS |
| TCTTACAGCATGAGATCCAA+AGG | 0.603872 | 4:-83579864 | None:intergenic |
| AGAGATATTGCCACCAACCA+CGG | 0.608135 | 4:+83579090 | None:intergenic |
| CGTGACTAGGAGTAGGGGAG+AGG | 0.612413 | 4:-83576783 | MsG0480023307.01.T01:three_prime_UTR |
| CTCTCCCCTACTCCTAGTCA+CGG | 0.615615 | 4:+83576784 | None:intergenic |
| ACATTGCAAATCCAGGGAGG+AGG | 0.617057 | 4:-83579403 | MsG0480023307.01.T01:intron |
| GGAAAATGAAAACAAGGGCA+CGG | 0.640574 | 4:-83579835 | MsG0480023307.01.T01:CDS |
| CCATGCCAATAAAAGTGACA+GGG | 0.651043 | 4:+83576949 | None:intergenic |
| GTGTGGTTGCACCTACAGCT+TGG | 0.651188 | 4:+83579041 | None:intergenic |
| AACAATCTTAAAGAACACAA+TGG | 0.654847 | 4:+83579183 | None:intergenic |
| GAGGAGGTGGAATCAAATCA+GGG | 0.660705 | 4:-83579387 | MsG0480023307.01.T01:CDS |
| GATGATGGCTTGTGAAGTAG+AGG | 0.663104 | 4:-83576685 | MsG0480023307.01.T01:three_prime_UTR |
| AACAGCAGTGAAGAAAGGTG+TGG | 0.696609 | 4:+83579024 | None:intergenic |
| TGTACCGTGACTAGGAGTAG+GGG | 0.703797 | 4:-83576788 | MsG0480023307.01.T01:three_prime_UTR |
| GGGCACGGTTAAAGAAAGTG+GGG | 0.727668 | 4:-83579820 | MsG0480023307.01.T01:intron |
| CTGTCATGTGACACATTGTG+AGG | 0.735310 | 4:+83579230 | None:intergenic |
| TCCATGGAAAATGAAAACAA+GGG | 0.738782 | 4:-83579840 | MsG0480023307.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAAATTAAAATTATCATA+TGG | + | Chr4:83578002-83578021 | None:intergenic | 10.0% |
| !! | ATTATAATTGCTTATAATAT+AGG | - | Chr4:83577599-83577618 | MsG0480023307.01.T01:intron | 10.0% |
| !!! | TGATAATTTTAATTTGTTAT+TGG | - | Chr4:83578004-83578023 | MsG0480023307.01.T01:intron | 10.0% |
| !! | ATTAAGAATCCAAAAAAATA+TGG | + | Chr4:83578797-83578816 | None:intergenic | 15.0% |
| !! | TAAATAAGGGTAAAAAATAA+AGG | - | Chr4:83576963-83576982 | MsG0480023307.01.T01:CDS | 15.0% |
| !! | TTAAGAATCCAAAAAAATAT+GGG | + | Chr4:83578796-83578815 | None:intergenic | 15.0% |
| !! | TTTATAATCAATTAGCATTT+AGG | - | Chr4:83577867-83577886 | MsG0480023307.01.T01:intron | 15.0% |
| !!! | ACATTTTTTTAATATGTTGT+TGG | - | Chr4:83578040-83578059 | MsG0480023307.01.T01:intron | 15.0% |
| !!! | TAATTATATTTTTAGCTTTG+AGG | + | Chr4:83579182-83579201 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTGTTTGATTTGA+TGG | - | Chr4:83577550-83577569 | MsG0480023307.01.T01:intron | 15.0% |
| !! | AATTATGTTAATCAGGTATT+AGG | - | Chr4:83579428-83579447 | MsG0480023307.01.T01:intron | 20.0% |
| !! | ACTTATTTATCATGATTTGA+TGG | - | Chr4:83579743-83579762 | MsG0480023307.01.T01:intron | 20.0% |
| !! | ATTAAAATTATCATATGGTG+TGG | + | Chr4:83577997-83578016 | None:intergenic | 20.0% |
| !! | ATTATTATTACAACCTTCAA+TGG | - | Chr4:83579221-83579240 | MsG0480023307.01.T01:CDS | 20.0% |
| !! | CATAAAAATTGTCATGAATT+AGG | - | Chr4:83577943-83577962 | MsG0480023307.01.T01:intron | 20.0% |
| !! | CATTCTCACATATAAAAAAT+GGG | + | Chr4:83578401-83578420 | None:intergenic | 20.0% |
| !! | CTATGATTTCTAAATCATAT+TGG | - | Chr4:83578197-83578216 | MsG0480023307.01.T01:intron | 20.0% |
| !! | CTTATTTATCATGATTTGAT+GGG | - | Chr4:83579744-83579763 | MsG0480023307.01.T01:intron | 20.0% |
| !! | GGAAAAGAACATAAATTTAT+GGG | - | Chr4:83579010-83579029 | MsG0480023307.01.T01:CDS | 20.0% |
| !! | TAAGAATCCAAAAAAATATG+GGG | + | Chr4:83578795-83578814 | None:intergenic | 20.0% |
| !! | TATAAAAATACCAAACAATC+TGG | + | Chr4:83577853-83577872 | None:intergenic | 20.0% |
| !! | TCATTCTCACATATAAAAAA+TGG | + | Chr4:83578402-83578421 | None:intergenic | 20.0% |
| !! | TGGAAAAGAACATAAATTTA+TGG | - | Chr4:83579009-83579028 | MsG0480023307.01.T01:CDS | 20.0% |
| !! | TTGTTAAAAATTAATGTGAG+AGG | - | Chr4:83576910-83576929 | MsG0480023307.01.T01:CDS | 20.0% |
| !!! | ATTTTATAGTACTGTTCTAA+AGG | - | Chr4:83578276-83578295 | MsG0480023307.01.T01:intron | 20.0% |
| !!! | CTAATTCATGACAATTTTTA+TGG | + | Chr4:83577945-83577964 | None:intergenic | 20.0% |
| !!! | GAAATTATACATAGATGTTT+TGG | - | Chr4:83577653-83577672 | MsG0480023307.01.T01:intron | 20.0% |
| !!! | GATTTTGGATTTTAATTTTC+TGG | - | Chr4:83577781-83577800 | MsG0480023307.01.T01:intron | 20.0% |
| !!! | TGGTTTTGATTTTGAAATTA+TGG | - | Chr4:83577673-83577692 | MsG0480023307.01.T01:intron | 20.0% |
| !!! | TTTTGAAATTATGGATGTTT+TGG | - | Chr4:83577682-83577701 | MsG0480023307.01.T01:intron | 20.0% |
| ! | AAAGTAATTTCTTCAACACA+TGG | + | Chr4:83576695-83576714 | None:intergenic | 25.0% |
| ! | AACAATCTTAAAGAACACAA+TGG | + | Chr4:83577271-83577290 | None:intergenic | 25.0% |
| ! | AAGCTTCAATAAAATCACAT+TGG | - | Chr4:83576826-83576845 | MsG0480023307.01.T01:three_prime_UTR | 25.0% |
| ! | AAGTAATTTCTTCAACACAT+GGG | + | Chr4:83576694-83576713 | None:intergenic | 25.0% |
| ! | AAGTACCTTATCTCAAATTA+TGG | - | Chr4:83577180-83577199 | MsG0480023307.01.T01:intron | 25.0% |
| ! | AGGAAATTGAACTCATATAT+AGG | - | Chr4:83579786-83579805 | MsG0480023307.01.T01:intron | 25.0% |
| ! | ATTAACTATATTTCCAGATC+TGG | + | Chr4:83577729-83577748 | None:intergenic | 25.0% |
| ! | ATTGAACTCATATATAGGAT+AGG | - | Chr4:83579791-83579810 | MsG0480023307.01.T01:intron | 25.0% |
| ! | CATATAAAAAATGGGATTCA+AGG | + | Chr4:83578393-83578412 | None:intergenic | 25.0% |
| ! | CTTTACTTTGCGATAAATAT+TGG | - | Chr4:83578712-83578731 | MsG0480023307.01.T01:intron | 25.0% |
| ! | TAAAAAAATGTACACCATGT+TGG | + | Chr4:83578031-83578050 | None:intergenic | 25.0% |
| ! | TATTTAGTTATTGTGAACTG+TGG | - | Chr4:83578227-83578246 | MsG0480023307.01.T01:intron | 25.0% |
| ! | TATTTATCGCAAAGTAAAGA+AGG | + | Chr4:83578711-83578730 | None:intergenic | 25.0% |
| ! | TCTGTCAAATTATGTTAATC+AGG | - | Chr4:83579421-83579440 | MsG0480023307.01.T01:intron | 25.0% |
| ! | TTCAATTGTGTATGAACAAT+GGG | + | Chr4:83578547-83578566 | None:intergenic | 25.0% |
| ! | TTTATTATTCAGCTCTTTGT+TGG | - | Chr4:83578304-83578323 | MsG0480023307.01.T01:intron | 25.0% |
| ! | TTTCAATTGTGTATGAACAA+TGG | + | Chr4:83578548-83578567 | None:intergenic | 25.0% |
| !! | ATGTACATAAAAGTCACTTT+CGG | + | Chr4:83579251-83579270 | None:intergenic | 25.0% |
| !! | CATCAGTGTATTAAAACTTT+TGG | + | Chr4:83578574-83578593 | None:intergenic | 25.0% |
| !! | TATAATATAGGTGTGTTGAT+TGG | - | Chr4:83577611-83577630 | MsG0480023307.01.T01:intron | 25.0% |
| !! | TGAAACCATAATTTGAGATA+AGG | + | Chr4:83577188-83577207 | None:intergenic | 25.0% |
| !! | TTCATGACAATTTTTATGGT+AGG | + | Chr4:83577941-83577960 | None:intergenic | 25.0% |
| !!! | AACATGAATTCTTTGTTGTT+TGG | + | Chr4:83577102-83577121 | None:intergenic | 25.0% |
| !!! | TCGTGGTTTTGTTAAAATTA+CGG | + | Chr4:83576763-83576782 | None:intergenic | 25.0% |
| !!! | TGTTATTTCATCTATTCATG+TGG | - | Chr4:83577902-83577921 | MsG0480023307.01.T01:intron | 25.0% |
| !!! | TTTTAATATGTTGTTGGTGA+TGG | - | Chr4:83578046-83578065 | MsG0480023307.01.T01:intron | 25.0% |
| !!! | TTTTTCAAATCTGTGACATT+TGG | - | Chr4:83577759-83577778 | MsG0480023307.01.T01:intron | 25.0% |
| AAATACACGAGCATAACTAT+TGG | + | Chr4:83579611-83579630 | None:intergenic | 30.0% | |
| AACTCATATATAGGATAGGA+AGG | - | Chr4:83579795-83579814 | MsG0480023307.01.T01:intron | 30.0% | |
| AGCAAACTTAACAAACTTCT+TGG | - | Chr4:83579069-83579088 | MsG0480023307.01.T01:CDS | 30.0% | |
| ATAAACACATTGCAAATCCA+GGG | - | Chr4:83577042-83577061 | MsG0480023307.01.T01:intron | 30.0% | |
| ATCCATGGAAAATGAAAACA+AGG | - | Chr4:83576610-83576629 | MsG0480023307.01.T01:three_prime_UTR | 30.0% | |
| ATGCTTAATAAGCTGTGAAA+GGG | + | Chr4:83578495-83578514 | None:intergenic | 30.0% | |
| CAATATCTCTCTCAAGTATT+TGG | - | Chr4:83577374-83577393 | MsG0480023307.01.T01:intron | 30.0% | |
| CTCAACAGATGATTAAATCA+AGG | - | Chr4:83577292-83577311 | MsG0480023307.01.T01:intron | 30.0% | |
| CTTGATTTAATCATCTGTTG+AGG | + | Chr4:83577294-83577313 | None:intergenic | 30.0% | |
| GAGATAAAAAAAGACAAACC+TGG | + | Chr4:83579123-83579142 | None:intergenic | 30.0% | |
| TAGAATTTGACCATAACTTG+AGG | - | Chr4:83578760-83578779 | MsG0480023307.01.T01:intron | 30.0% | |
| TATGCTTAATAAGCTGTGAA+AGG | + | Chr4:83578496-83578515 | None:intergenic | 30.0% | |
| TATGGTCAAATTCTATAGCT+TGG | + | Chr4:83578755-83578774 | None:intergenic | 30.0% | |
| TCCATGGAAAATGAAAACAA+GGG | - | Chr4:83576611-83576630 | MsG0480023307.01.T01:three_prime_UTR | 30.0% | |
| ! | AATCTGTGACATTTGGATTT+TGG | - | Chr4:83577766-83577785 | MsG0480023307.01.T01:intron | 30.0% |
| ! | AGCGTGATATCTAAAACATT+CGG | + | Chr4:83578983-83579002 | None:intergenic | 30.0% |
| ! | CATGTTCATATGTTTTCTTG+TGG | - | Chr4:83577116-83577135 | MsG0480023307.01.T01:intron | 30.0% |
| ! | GCATTTTACTTTCTTCTGAA+GGG | - | Chr4:83578154-83578173 | MsG0480023307.01.T01:intron | 30.0% |
| ! | TTACCCTTATTTATGAGCTT+CGG | + | Chr4:83576956-83576975 | None:intergenic | 30.0% |
| !! | AATTTGTTATTGGACCAACA+TGG | - | Chr4:83578014-83578033 | MsG0480023307.01.T01:intron | 30.0% |
| !! | GTGCTCATGATTTTTATTTG+TGG | + | Chr4:83579152-83579171 | None:intergenic | 30.0% |
| !!! | ACTTTGAGCTTTGTTTTTTG+TGG | - | Chr4:83577336-83577355 | MsG0480023307.01.T01:intron | 30.0% |
| !!! | CTTTGAGCTTTGTTTTTTGT+GGG | - | Chr4:83577337-83577356 | MsG0480023307.01.T01:intron | 30.0% |
| !!! | TTTAGCTACTTTTAAGAGAG+AGG | - | Chr4:83577458-83577477 | MsG0480023307.01.T01:intron | 30.0% |
| !!! | TTTTGAAACATTTGCCTACA+AGG | + | Chr4:83579821-83579840 | None:intergenic | 30.0% |
| AACAAAAATACGACTGCGAT+TGG | + | Chr4:83578938-83578957 | None:intergenic | 35.0% | |
| AACAAAGCTGAGTTAGCAAT+AGG | + | Chr4:83579374-83579393 | None:intergenic | 35.0% | |
| AAGCAAAAGCAATGTTAAGC+TGG | + | Chr4:83578680-83578699 | None:intergenic | 35.0% | |
| ACATTATTTGTACCGTGACT+AGG | - | Chr4:83579655-83579674 | MsG0480023307.01.T01:intron | 35.0% | |
| AGCTTTCAAATCTGTTCTTC+AGG | - | Chr4:83578131-83578150 | MsG0480023307.01.T01:intron | 35.0% | |
| ATCAAGGTCACAGTTCTTAA+AGG | - | Chr4:83577308-83577327 | MsG0480023307.01.T01:intron | 35.0% | |
| ATCATGATTTGATGGGATGA+TGG | - | Chr4:83579751-83579770 | MsG0480023307.01.T01:intron | 35.0% | |
| CTTTGGTACTCATCAAACAT+TGG | - | Chr4:83577141-83577160 | MsG0480023307.01.T01:intron | 35.0% | |
| GAATCCAAAAAAATATGGGG+AGG | + | Chr4:83578792-83578811 | None:intergenic | 35.0% | |
| GATAAACACATTGCAAATCC+AGG | - | Chr4:83577041-83577060 | MsG0480023307.01.T01:intron | 35.0% | |
| GATGATTCATGTGGTGATAT+TGG | - | Chr4:83576781-83576800 | MsG0480023307.01.T01:three_prime_UTR | 35.0% | |
| GCTTTCAAATCTGTTCTTCA+GGG | - | Chr4:83578132-83578151 | MsG0480023307.01.T01:intron | 35.0% | |
| TCACCGAAGCTCATAAATAA+GGG | - | Chr4:83576950-83576969 | MsG0480023307.01.T01:CDS | 35.0% | |
| TGCATAATCCTCGTTACATA+TGG | - | Chr4:83578827-83578846 | MsG0480023307.01.T01:intron | 35.0% | |
| TTAGATATCACGCTATCACT+TGG | - | Chr4:83578989-83579008 | MsG0480023307.01.T01:CDS | 35.0% | |
| TTAGCCACCAAATATCATCA+AGG | - | Chr4:83578463-83578482 | MsG0480023307.01.T01:intron | 35.0% | |
| TTGCATACGGAGAAACAAAA+AGG | - | Chr4:83579555-83579574 | MsG0480023307.01.T01:intron | 35.0% | |
| ! | CAATAAAAGTGACAGGGTTT+TGG | + | Chr4:83579499-83579518 | None:intergenic | 35.0% |
| ! | GGCATTTTACTTTCTTCTGA+AGG | - | Chr4:83578153-83578172 | MsG0480023307.01.T01:intron | 35.0% |
| ! | GTAATGGGAGTTATTGCATA+CGG | - | Chr4:83579542-83579561 | MsG0480023307.01.T01:intron | 35.0% |
| ! | GTGTTCTCCTTGATGATATT+TGG | + | Chr4:83578473-83578492 | None:intergenic | 35.0% |
| ! | TATATTTCCAGATCTGGAGT+GGG | + | Chr4:83577723-83577742 | None:intergenic | 35.0% |
| ! | TATGTTTTCTTGTGGCTCTT+TGG | - | Chr4:83577124-83577143 | MsG0480023307.01.T01:intron | 35.0% |
| ! | TTCATTTTCCATGGATCCTT+TGG | + | Chr4:83576606-83576625 | None:intergenic | 35.0% |
| ! | TTCTCCTTGATGATATTTGG+TGG | + | Chr4:83578470-83578489 | None:intergenic | 35.0% |
| !!! | CAAAACCCTGTCACTTTTAT+TGG | - | Chr4:83579497-83579516 | MsG0480023307.01.T01:intron | 35.0% |
| AAAACATACCCCACTTGCAA+TGG | + | Chr4:83577529-83577548 | None:intergenic | 40.0% | |
| AATCCAAACAAGTGAAACCC+AGG | + | Chr4:83578081-83578100 | None:intergenic | 40.0% | |
| AGATTTGAAAGCTCTTGCAG+CGG | + | Chr4:83578124-83578143 | None:intergenic | 40.0% | |
| CAAAACCACGATGATTCATG+TGG | - | Chr4:83576772-83576791 | MsG0480023307.01.T01:three_prime_UTR | 40.0% | |
| CAGGTATTAGGCAATGCAAA+AGG | - | Chr4:83579440-83579459 | MsG0480023307.01.T01:intron | 40.0% | |
| CATACGGAGAAACAAAAAGG+AGG | - | Chr4:83579558-83579577 | MsG0480023307.01.T01:intron | 40.0% | |
| CCAAAAAAATATGGGGAGGA+AGG | + | Chr4:83578788-83578807 | None:intergenic | 40.0% | |
| CCATGCCAATAAAAGTGACA+GGG | + | Chr4:83579505-83579524 | None:intergenic | 40.0% | |
| CTATATTTCCAGATCTGGAG+TGG | + | Chr4:83577724-83577743 | None:intergenic | 40.0% | |
| CTCACCGAAGCTCATAAATA+AGG | - | Chr4:83576949-83576968 | MsG0480023307.01.T01:CDS | 40.0% | |
| GCAAAAACAGCAGTGAAGAA+AGG | + | Chr4:83577435-83577454 | None:intergenic | 40.0% | |
| GGAAAATGAAAACAAGGGCA+CGG | - | Chr4:83576616-83576635 | MsG0480023307.01.T01:three_prime_UTR | 40.0% | |
| GGCTACTCAGTTACTGTAAT+GGG | - | Chr4:83579527-83579546 | MsG0480023307.01.T01:intron | 40.0% | |
| GTTCTTTGCCATATGTAACG+AGG | + | Chr4:83578838-83578857 | None:intergenic | 40.0% | |
| GTTTCTTTCAACCAAGCTGT+AGG | - | Chr4:83577399-83577418 | MsG0480023307.01.T01:intron | 40.0% | |
| TAGCAGATAGCCAGATTGTT+TGG | - | Chr4:83577840-83577859 | MsG0480023307.01.T01:intron | 40.0% | |
| TATCACCACATGAATCATCG+TGG | + | Chr4:83576780-83576799 | None:intergenic | 40.0% | |
| TCATCCATTTCAACCTACCA+GGG | - | Chr4:83578874-83578893 | MsG0480023307.01.T01:intron | 40.0% | |
| TGACACATTGTGAGGAAGAT+TGG | + | Chr4:83577216-83577235 | None:intergenic | 40.0% | |
| TGGAATCAAATCAGGGAAGA+TGG | - | Chr4:83577071-83577090 | MsG0480023307.01.T01:intron | 40.0% | |
| TGGCTACTCAGTTACTGTAA+TGG | - | Chr4:83579526-83579545 | MsG0480023307.01.T01:intron | 40.0% | |
| TTCATCCATTTCAACCTACC+AGG | - | Chr4:83578873-83578892 | MsG0480023307.01.T01:intron | 40.0% | |
| ! | TAAGTTTGCTCCATATGCTG+CGG | + | Chr4:83579059-83579078 | None:intergenic | 40.0% |
| !! | AATATGTTGTTGGTGATGGC+AGG | - | Chr4:83578050-83578069 | MsG0480023307.01.T01:intron | 40.0% |
| !! | ATATGTTGTTGGTGATGGCA+GGG | - | Chr4:83578051-83578070 | MsG0480023307.01.T01:intron | 40.0% |
| !! | CTACTTTTAAGAGAGAGGCT+TGG | - | Chr4:83577463-83577482 | MsG0480023307.01.T01:intron | 40.0% |
| !!! | CCTTCCTCCCCATATTTTTT+TGG | - | Chr4:83578785-83578804 | MsG0480023307.01.T01:intron | 40.0% |
| !!! | GCCCTTGTTTTCATTTTCCA+TGG | + | Chr4:83576615-83576634 | None:intergenic | 40.0% |
| AACACATTGCAAATCCAGGG+AGG | - | Chr4:83577045-83577064 | MsG0480023307.01.T01:intron | 45.0% | |
| AACAGCAGTGAAGAAAGGTG+TGG | + | Chr4:83577430-83577449 | None:intergenic | 45.0% | |
| AGAGATATTGCCACCAACCA+CGG | + | Chr4:83577364-83577383 | None:intergenic | 45.0% | |
| AGGGCACGGTTAAAGAAAGT+GGG | - | Chr4:83576630-83576649 | MsG0480023307.01.T01:three_prime_UTR | 45.0% | |
| ATGAGCTTCGGTGAGTTTGT+CGG | + | Chr4:83576944-83576963 | None:intergenic | 45.0% | |
| CATTGAGTTCAACTTCTCCC+TGG | + | Chr4:83578894-83578913 | None:intergenic | 45.0% | |
| CTGCGATTGGAGACATATAC+AGG | + | Chr4:83578925-83578944 | None:intergenic | 45.0% | |
| CTGTCATGTGACACATTGTG+AGG | + | Chr4:83577224-83577243 | None:intergenic | 45.0% | |
| GAGGAGGTGGAATCAAATCA+GGG | - | Chr4:83577064-83577083 | MsG0480023307.01.T01:intron | 45.0% | |
| GCCATGCCAATAAAAGTGAC+AGG | + | Chr4:83579506-83579525 | None:intergenic | 45.0% | |
| TACAAGTGCTTTGACACTCC+AGG | - | Chr4:83579102-83579121 | MsG0480023307.01.T01:CDS | 45.0% | |
| TTGTACCGTGACTAGGAGTA+GGG | - | Chr4:83579662-83579681 | MsG0480023307.01.T01:intron | 45.0% | |
| TTTCTGGATCTGCACTCATC+TGG | - | Chr4:83577797-83577816 | MsG0480023307.01.T01:intron | 45.0% | |
| TTTGTACCGTGACTAGGAGT+AGG | - | Chr4:83579661-83579680 | MsG0480023307.01.T01:intron | 45.0% | |
| ! | AAGGGCACGGTTAAAGAAAG+TGG | - | Chr4:83576629-83576648 | MsG0480023307.01.T01:three_prime_UTR | 45.0% |
| ! | ATAGGATAGGAAGGCCTTGT+AGG | - | Chr4:83579804-83579823 | MsG0480023307.01.T01:intron | 45.0% |
| ! | CACTTTCGGTTTGCCATTGA+AGG | + | Chr4:83579237-83579256 | None:intergenic | 45.0% |
| ! | GATGATGGCTTGTGAAGTAG+AGG | - | Chr4:83579766-83579785 | MsG0480023307.01.T01:intron | 45.0% |
| ! | GTTGCCTGCAGTAGTTTTCA+TGG | - | Chr4:83578955-83578974 | MsG0480023307.01.T01:CDS | 45.0% |
| ! | TTCTCCCTGGTAGGTTGAAA+TGG | + | Chr4:83578881-83578900 | None:intergenic | 45.0% |
| !!! | AAGTGACAGGGTTTTGGAAC+AGG | + | Chr4:83579493-83579512 | None:intergenic | 45.0% |
| !!! | CCCTGTCACTTTTATTGGCA+TGG | - | Chr4:83579502-83579521 | MsG0480023307.01.T01:intron | 45.0% |
| !!! | CTTTGTTTTTTGTGGGTCCG+TGG | - | Chr4:83577344-83577363 | MsG0480023307.01.T01:intron | 45.0% |
| !!! | GTCACTTTTATTGGCATGGC+TGG | - | Chr4:83579506-83579525 | MsG0480023307.01.T01:intron | 45.0% |
| ACATTGCAAATCCAGGGAGG+AGG | - | Chr4:83577048-83577067 | MsG0480023307.01.T01:intron | 50.0% | |
| ATGGCAACACCAGCAACAAC+AGG | + | Chr4:83577510-83577529 | None:intergenic | 50.0% | |
| ATTTGATTCCACCTCCTCCC+TGG | + | Chr4:83577062-83577081 | None:intergenic | 50.0% | |
| CCATAATCCCACTCCAGATC+TGG | - | Chr4:83577713-83577732 | MsG0480023307.01.T01:intron | 50.0% | |
| CTTAACTCAGCCGCAGCATA+TGG | - | Chr4:83579046-83579065 | MsG0480023307.01.T01:CDS | 50.0% | |
| GAGCCTGGGTTTCACTTGTT+TGG | - | Chr4:83578075-83578094 | MsG0480023307.01.T01:intron | 50.0% | |
| GAGTTCAACTTCTCCCTGGT+AGG | + | Chr4:83578890-83578909 | None:intergenic | 50.0% | |
| GCTCTTGTTCCTGTTGTTGC+TGG | - | Chr4:83577498-83577517 | MsG0480023307.01.T01:intron | 50.0% | |
| GGAGGAGGTGGAATCAAATC+AGG | - | Chr4:83577063-83577082 | MsG0480023307.01.T01:intron | 50.0% | |
| GGCTCCATGAAAACTACTGC+AGG | + | Chr4:83578962-83578981 | None:intergenic | 50.0% | |
| GGGCACGGTTAAAGAAAGTG+GGG | - | Chr4:83576631-83576650 | MsG0480023307.01.T01:three_prime_UTR | 50.0% | |
| TGTACCGTGACTAGGAGTAG+GGG | - | Chr4:83579663-83579682 | MsG0480023307.01.T01:intron | 50.0% | |
| ! | CCAGATCTGGAGTGGGATTA+TGG | + | Chr4:83577716-83577735 | None:intergenic | 50.0% |
| !! | CTGGTGTTGCCATTGCAAGT+GGG | - | Chr4:83577517-83577536 | MsG0480023307.01.T01:intron | 50.0% |
| !! | GAGGAAGGCACCTCAAGTTA+TGG | + | Chr4:83578773-83578792 | None:intergenic | 50.0% |
| !! | TGGTGTTGCCATTGCAAGTG+GGG | - | Chr4:83577518-83577537 | MsG0480023307.01.T01:intron | 50.0% |
| !!! | GTTTTTTGTGGGTCCGTGGT+TGG | - | Chr4:83577348-83577367 | MsG0480023307.01.T01:intron | 50.0% |
| CTCTCCCCTACTCCTAGTCA+CGG | + | Chr4:83579670-83579689 | None:intergenic | 55.0% | |
| CTCTTGCAGCGGTTGCACTT+AGG | + | Chr4:83578113-83578132 | None:intergenic | 55.0% | |
| GTGTGGTTGCACCTACAGCT+TGG | + | Chr4:83577413-83577432 | None:intergenic | 55.0% | |
| TTGCAAATCCAGGGAGGAGG+TGG | - | Chr4:83577051-83577070 | MsG0480023307.01.T01:intron | 55.0% | |
| ! | TTTTGTGGGTCCGTGGTTGG+TGG | - | Chr4:83577351-83577370 | MsG0480023307.01.T01:intron | 55.0% |
| !! | GCTGGTGTTGCCATTGCAAG+TGG | - | Chr4:83577516-83577535 | MsG0480023307.01.T01:intron | 55.0% |
| CGTGACTAGGAGTAGGGGAG+AGG | - | Chr4:83579668-83579687 | MsG0480023307.01.T01:intron | 60.0% | |
| ! | GGTGATGGCAGGGTGAGCCT+GGG | - | Chr4:83578061-83578080 | MsG0480023307.01.T01:intron | 65.0% |
| !! | TGGTGATGGCAGGGTGAGCC+TGG | - | Chr4:83578060-83578079 | MsG0480023307.01.T01:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 83576596 | 83579877 | 83576596 | ID=MsG0480023307.01;Name=MsG0480023307.01 |
| Chr4 | mRNA | 83576596 | 83579877 | 83576596 | ID=MsG0480023307.01.T01;Parent=MsG0480023307.01;Name=MsG0480023307.01.T01;_AED=0.43;_eAED=0.43;_QI=0|0|0.33|1|1|1|3|288|226 |
| Chr4 | exon | 83576596 | 83577030 | 83576596 | ID=MsG0480023307.01.T01:exon:5508;Parent=MsG0480023307.01.T01 |
| Chr4 | exon | 83578934 | 83579410 | 83578934 | ID=MsG0480023307.01.T01:exon:5507;Parent=MsG0480023307.01.T01 |
| Chr4 | exon | 83579821 | 83579877 | 83579821 | ID=MsG0480023307.01.T01:exon:5506;Parent=MsG0480023307.01.T01 |
| Chr4 | CDS | 83579821 | 83579877 | 83579821 | ID=MsG0480023307.01.T01:cds;Parent=MsG0480023307.01.T01 |
| Chr4 | CDS | 83578934 | 83579410 | 83578934 | ID=MsG0480023307.01.T01:cds;Parent=MsG0480023307.01.T01 |
| Chr4 | CDS | 83576884 | 83577030 | 83576884 | ID=MsG0480023307.01.T01:cds;Parent=MsG0480023307.01.T01 |
| Chr4 | three_prime_UTR | 83576596 | 83576883 | 83576596 | ID=MsG0480023307.01.T01:three_prime_utr;Parent=MsG0480023307.01.T01 |
| Gene Sequence |
| Protein sequence |
