AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280006692.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006692.01.T01 MTR_2g012990 78.710 310 13 3 27 284 156 464 1.79e-169 496
MsG0280006692.01.T01 MTR_2g012990 69.697 66 18 1 304 369 811 874 2.24e-17 84.3
MsG0280006692.01.T01 MTR_2g012990 75.194 258 11 3 79 284 2 258 1.12e-131 392
MsG0280006692.01.T01 MTR_2g012990 69.697 66 18 1 304 369 605 668 2.81e-17 84.0
MsG0280006692.01.T01 MTR_2g079850 34.810 316 139 10 27 278 140 452 7.55e-42 157
MsG0280006692.01.T01 MTR_7g009000 62.963 108 25 1 124 216 96 203 7.49e-39 138
MsG0280006692.01.T01 MTR_2g079850 33.993 303 133 10 40 278 1 300 1.53e-36 141
MsG0280006692.01.T01 MTR_1g075740 34.516 310 143 14 27 279 170 476 1.36e-31 127
MsG0280006692.01.T01 MTR_1g041465 29.960 247 132 9 27 236 176 418 2.52e-18 87.4
MsG0280006692.01.T01 MTR_7g008980 43.396 106 28 2 120 225 59 132 3.75e-14 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006692.01.T01 AT4G27430 39.016 305 151 8 9 281 134 435 5.00e-54 192
MsG0280006692.01.T01 AT4G27430 39.016 305 151 8 9 281 134 435 5.00e-54 192
MsG0280006692.01.T01 AT1G61100 38.961 308 117 13 27 283 157 444 3.55e-46 169
MsG0280006692.01.T01 AT1G61100 38.961 308 117 13 27 283 156 443 3.75e-46 169
MsG0280006692.01.T01 AT5G43310 33.333 288 139 14 26 282 227 492 1.31e-32 130
MsG0280006692.01.T01 AT5G43310 33.101 287 139 14 27 282 171 435 6.33e-32 127
MsG0280006692.01.T01 AT5G43310 33.101 287 139 14 27 282 171 435 6.54e-32 127
MsG0280006692.01.T01 AT5G43310 33.101 287 139 14 27 282 171 435 6.54e-32 127
MsG0280006692.01.T01 AT5G43310 33.451 284 136 14 30 282 174 435 7.57e-32 127

Find 66 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTTGGAGCATCGCGTTTA+AGG 0.193408 2:+5057681 MsG0280006692.01.T01:CDS
GGTTATTGTTGATAACAATT+TGG 0.244904 2:+5059722 MsG0280006692.01.T01:CDS
AAAAGCATGCAGATGATCTT+TGG 0.249753 2:+5058335 MsG0280006692.01.T01:CDS
GCATTAATTTCAAGGATTTA+TGG 0.262511 2:+5058305 MsG0280006692.01.T01:CDS
CTTTGCTATTTGATCTTTAC+CGG 0.275133 2:-5060512 None:intergenic
GATTTCGCTGCAACGCCTTT+TGG 0.284161 2:+5057550 MsG0280006692.01.T01:CDS
TTTAACAGGAAGATGAAATT+AGG 0.285960 2:+5060407 MsG0280006692.01.T01:intron
CAAATACTATAGGCACATTT+GGG 0.300601 2:-5059767 None:intergenic
TCAAATACTATAGGCACATT+TGG 0.314149 2:-5059768 None:intergenic
CTTTGTTTGACTAGTTCATT+AGG 0.328498 2:+5057491 MsG0280006692.01.T01:CDS
AGCAAAGATTTCTTCAAAAC+AGG 0.359638 2:+5060528 MsG0280006692.01.T01:CDS
CATTCATTGCTGCAATGTTA+AGG 0.373334 2:+5057528 MsG0280006692.01.T01:CDS
TCAACTACATCACTCCAAAA+AGG 0.388918 2:+5059066 MsG0280006692.01.T01:CDS
AGATGAAATTAGGAAGCAAT+TGG 0.394685 2:+5060417 MsG0280006692.01.T01:CDS
TGGATCATCAGGAATTATAC+TGG 0.395796 2:+5058411 MsG0280006692.01.T01:CDS
AAAAGAGAAAATCTCATCAT+AGG 0.406246 2:+5058880 MsG0280006692.01.T01:CDS
AAAGCATGCAGATGATCTTT+GGG 0.406887 2:+5058336 MsG0280006692.01.T01:CDS
ATTGCAGCAATGAATGTGTT+AGG 0.414946 2:-5057521 None:intergenic
GGAAGCTTGCATTAATTTCA+AGG 0.419305 2:+5058297 MsG0280006692.01.T01:CDS
TAGGAAGCAATTGGAAGAAA+AGG 0.432908 2:+5060426 MsG0280006692.01.T01:CDS
TATGAAGGCATTTGCTGACT+AGG 0.433103 2:-5058777 None:intergenic
ATATATGGCGGTACGTTGTA+AGG 0.434933 2:-5058738 None:intergenic
TATACACGTAGTCTTGTTGC+TGG 0.437080 2:+5057614 MsG0280006692.01.T01:CDS
AAACAGAAACAGTTCTGTTA+AGG 0.437731 2:+5060583 MsG0280006692.01.T01:three_prime_UTR
GCTGAAAGAACTGCATCTTC+CGG 0.450013 2:+5060472 MsG0280006692.01.T01:CDS
CTATCACCATCAAATACTAT+AGG 0.472793 2:-5059777 None:intergenic
TAGGCACATTTGGGGAATCA+TGG 0.474102 2:-5059758 None:intergenic
GGTGTTGGTCGAACCGTGCC+CGG 0.475330 2:+5060493 MsG0280006692.01.T01:CDS
AATGTGCCTATAGTATTTGA+TGG 0.482716 2:+5059771 MsG0280006692.01.T01:CDS
GGAGGATATCCTTGGTATGA+AGG 0.485665 2:-5058792 None:intergenic
TCATTGCAGAAGGTCCATAA+AGG 0.485905 2:+5059191 MsG0280006692.01.T01:CDS
GAAGGTAAGGAGGATATCCT+TGG 0.491685 2:-5058800 None:intergenic
ACCTTCAAAATAATATGCAT+TGG 0.495082 2:+5058817 MsG0280006692.01.T01:CDS
AGGGAAGAGGATCAGAAGAT+TGG 0.517029 2:+5059701 MsG0280006692.01.T01:intron
AGGAGAAATGGAAATGAGAG+TGG 0.523974 2:+5059086 MsG0280006692.01.T01:CDS
TATGCATTGGTCTTCTAACA+TGG 0.529226 2:+5058830 MsG0280006692.01.T01:CDS
ATCTATTTGAGTAACTATAT+AGG 0.529317 2:-5060803 None:intergenic
TTCATAAAACAAAGCAACAA+AGG 0.541701 2:-5060897 None:intergenic
TATTTGATCTTTACCGGGCA+CGG 0.542106 2:-5060506 None:intergenic
AGAACTGCATCTTCCGGTGT+TGG 0.542823 2:+5060478 MsG0280006692.01.T01:CDS
TCATCACAACCCAAGGGAAG+AGG 0.543533 2:+5059688 MsG0280006692.01.T01:intron
TAAGGCCATGGCATATGCAT+TGG 0.545284 2:-5058720 None:intergenic
AACAGTTCTGTTAAGGTCAG+AGG 0.551575 2:+5060590 MsG0280006692.01.T01:three_prime_UTR
AGAAAATCTCATCATAGGAA+AGG 0.561136 2:+5058885 MsG0280006692.01.T01:CDS
GGCGGTACGTTGTAAGGCCA+TGG 0.562859 2:-5058732 None:intergenic
AGCACTACTTCGAAAAGAGC+AGG 0.563412 2:+5057583 MsG0280006692.01.T01:CDS
TTAGTGTCATTCAGTTCAAG+TGG 0.578209 2:+5060635 MsG0280006692.01.T01:three_prime_UTR
TTTGCTATTTGATCTTTACC+GGG 0.587874 2:-5060511 None:intergenic
GCAATTGGAAGAAAAGGTGA+TGG 0.601146 2:+5060432 MsG0280006692.01.T01:CDS
GTGCTATTCGAGACTCCAAA+AGG 0.607180 2:-5057565 None:intergenic
CAGCAAATGCCTTCATACCA+AGG 0.609523 2:+5058783 MsG0280006692.01.T01:CDS
GGAAGATGCAGTTCTTTCAG+CGG 0.614043 2:-5060470 None:intergenic
TAGGCCATGGTGAATCTACA+AGG 0.615491 2:+5060682 MsG0280006692.01.T01:three_prime_UTR
GAAAAGGTGATGGAAGACAG+AGG 0.617075 2:+5060442 MsG0280006692.01.T01:CDS
TGCACTTGAATCATTGCAGA+AGG 0.618725 2:+5059181 MsG0280006692.01.T01:CDS
ACTTCGAAAAGAGCAGGCAA+TGG 0.623572 2:+5057589 MsG0280006692.01.T01:CDS
ATGCATTGGTCTTCTAACAT+GGG 0.624478 2:+5058831 MsG0280006692.01.T01:CDS
GATCCAGAAAATGAGAGTGC+TGG 0.627508 2:-5058394 None:intergenic
CTAATGAACTAGTCAAACAA+AGG 0.628760 2:-5057490 None:intergenic
ATATGCCAATGCATATGCCA+TGG 0.630372 2:+5058715 MsG0280006692.01.T01:CDS
AGATGTGAACTTATCGCACA+TGG 0.643303 2:+5058683 MsG0280006692.01.T01:intron
TGAAGATTATACATATATGG+CGG 0.644615 2:-5058750 None:intergenic
GGGCACGGTTCGACCAACAC+CGG 0.650492 2:-5060491 None:intergenic
TTTACCTTGTAGATTCACCA+TGG 0.665569 2:-5060686 None:intergenic
AAATACTATAGGCACATTTG+GGG 0.667223 2:-5059766 None:intergenic
CCAGAAAATGAGAGTGCTGG+TGG 0.704940 2:-5058391 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGTATAAATAAACTTTT+AGG + Chr2:5060762-5060781 MsG0280006692.01.T01:three_prime_UTR 10.0%
!!! AATTGTGTTTTTTATGTTAA+AGG + Chr2:5057802-5057821 MsG0280006692.01.T01:intron 15.0%
!!! GTATTGTGAATTTTTTATTA+TGG + Chr2:5060289-5060308 MsG0280006692.01.T01:intron 15.0%
!!! TTTTGAAGATTATACATATA+TGG - Chr2:5058756-5058775 None:intergenic 15.0%
!! AAAAAATCAAAGATTTGACT+TGG - Chr2:5058617-5058636 None:intergenic 20.0%
!! ATCTATTTGAGTAACTATAT+AGG - Chr2:5060806-5060825 None:intergenic 20.0%
!! ATTGTAGAAAACAAAAAAGA+CGG + Chr2:5058513-5058532 MsG0280006692.01.T01:intron 20.0%
!! TACAATTAAGGTAAAAGAAA+AGG - Chr2:5058558-5058577 None:intergenic 20.0%
!! TGAATTCAATATATGTTGAT+TGG + Chr2:5058199-5058218 MsG0280006692.01.T01:intron 20.0%
!! TTCTTATATGTACTGTAAAT+TGG + Chr2:5057731-5057750 MsG0280006692.01.T01:intron 20.0%
!!! TTTGAAACTAATTCTAAATC+TGG + Chr2:5058258-5058277 MsG0280006692.01.T01:intron 20.0%
! AAAAGAGAAAATCTCATCAT+AGG + Chr2:5058880-5058899 MsG0280006692.01.T01:CDS 25.0%
! AATTTCACAATCTACAAAGT+AGG - Chr2:5057937-5057956 None:intergenic 25.0%
! ACCTTCAAAATAATATGCAT+TGG + Chr2:5058817-5058836 MsG0280006692.01.T01:CDS 25.0%
! AGGAAATTAGAAAAACTTGT+CGG + Chr2:5060610-5060629 MsG0280006692.01.T01:three_prime_UTR 25.0%
! CAGACTTCATAATACAATTA+AGG - Chr2:5058570-5058589 None:intergenic 25.0%
! GATAAGAGAAAAAAAACAGA+AGG + Chr2:5059012-5059031 MsG0280006692.01.T01:intron 25.0%
! GCATTAATTTCAAGGATTTA+TGG + Chr2:5058305-5058324 MsG0280006692.01.T01:CDS 25.0%
! GTGAAATTTCACTTATCTAA+GGG + Chr2:5057949-5057968 MsG0280006692.01.T01:intron 25.0%
! TGAAATTTCACTTATCTAAG+GGG + Chr2:5057950-5057969 MsG0280006692.01.T01:intron 25.0%
! TGAAGATTATACATATATGG+CGG - Chr2:5058753-5058772 None:intergenic 25.0%
! TGTGAAATTTCACTTATCTA+AGG + Chr2:5057948-5057967 MsG0280006692.01.T01:intron 25.0%
! TTCATAAAACAAAGCAACAA+AGG - Chr2:5060900-5060919 None:intergenic 25.0%
! TTTAACAGGAAGATGAAATT+AGG + Chr2:5060407-5060426 MsG0280006692.01.T01:intron 25.0%
!! ACTTTTATGTCTGAAAAGAA+AGG - Chr2:5057898-5057917 None:intergenic 25.0%
!! ATGTAGCTTTTATAAGGTAT+AGG + Chr2:5060663-5060682 MsG0280006692.01.T01:three_prime_UTR 25.0%
!! ATTCAATATATGTTGATTGG+TGG + Chr2:5058202-5058221 MsG0280006692.01.T01:intron 25.0%
!! CTTTTATGTCTGAAAAGAAA+GGG - Chr2:5057897-5057916 None:intergenic 25.0%
!! GTATATTTTGCAAATGCATT+TGG + Chr2:5057665-5057684 MsG0280006692.01.T01:CDS 25.0%
!! TTTTTATAGATTGCACACAA+TGG + Chr2:5058632-5058651 MsG0280006692.01.T01:intron 25.0%
!!! ACCAATGCATATTATTTTGA+AGG - Chr2:5058821-5058840 None:intergenic 25.0%
!!! AGCTATTATTCTTGTTTTTC+TGG - Chr2:5058459-5058478 None:intergenic 25.0%
!!! ATATTATTTTGAAGGTAAGG+AGG - Chr2:5058813-5058832 None:intergenic 25.0%
!!! GGTTATTGTTGATAACAATT+TGG + Chr2:5059722-5059741 MsG0280006692.01.T01:CDS 25.0%
!!! TGCATATTATTTTGAAGGTA+AGG - Chr2:5058816-5058835 None:intergenic 25.0%
AAAAACAGAAGGAAATCATC+TGG + Chr2:5059023-5059042 MsG0280006692.01.T01:intron 30.0%
AAACAGAAACAGTTCTGTTA+AGG + Chr2:5060583-5060602 MsG0280006692.01.T01:three_prime_UTR 30.0%
AAAGTCAATTTCATAGTCCA+TGG - Chr2:5060064-5060083 None:intergenic 30.0%
AAATACTATAGGCACATTTG+GGG - Chr2:5059769-5059788 None:intergenic 30.0%
AAGACTCAAACAATTCTTGA+AGG + Chr2:5058987-5059006 MsG0280006692.01.T01:intron 30.0%
AATGGAAGACAGAATAAGTA+TGG + Chr2:5059902-5059921 MsG0280006692.01.T01:intron 30.0%
AATGTGCCTATAGTATTTGA+TGG + Chr2:5059771-5059790 MsG0280006692.01.T01:CDS 30.0%
ACAGTACATATAAGAACTGT+AGG - Chr2:5057727-5057746 None:intergenic 30.0%
ACTTCATTGAAATCCTTGTT+TGG - Chr2:5059458-5059477 None:intergenic 30.0%
AGAAAATCTCATCATAGGAA+AGG + Chr2:5058885-5058904 MsG0280006692.01.T01:CDS 30.0%
AGAGAACTAACATCAAAAGT+TGG - Chr2:5057989-5058008 None:intergenic 30.0%
AGATGAAATTAGGAAGCAAT+TGG + Chr2:5060417-5060436 MsG0280006692.01.T01:CDS 30.0%
AGCAAAGATTTCTTCAAAAC+AGG + Chr2:5060528-5060547 MsG0280006692.01.T01:CDS 30.0%
ATAATCTTTCTGATTCCCAA+TGG + Chr2:5059884-5059903 MsG0280006692.01.T01:intron 30.0%
ATACTTATTCTGTCTTCCAT+TGG - Chr2:5059903-5059922 None:intergenic 30.0%
ATCTGGTATTCAATGTATGT+AGG + Chr2:5058275-5058294 MsG0280006692.01.T01:intron 30.0%
ATGAAGGAATCATCAATGAT+AGG - Chr2:5059841-5059860 None:intergenic 30.0%
CAAATACTATAGGCACATTT+GGG - Chr2:5059770-5059789 None:intergenic 30.0%
CTAATGAACTAGTCAAACAA+AGG - Chr2:5057493-5057512 None:intergenic 30.0%
CTATCACCATCAAATACTAT+AGG - Chr2:5059780-5059799 None:intergenic 30.0%
GAAATTCACCCTAATCTAAT+AGG - Chr2:5058132-5058151 None:intergenic 30.0%
GAATGCATTATCAAAGATAG+AGG + Chr2:5059973-5059992 MsG0280006692.01.T01:intron 30.0%
TACTTATTCTGTCTTCCATT+GGG - Chr2:5059902-5059921 None:intergenic 30.0%
TCAAATACTATAGGCACATT+TGG - Chr2:5059771-5059790 None:intergenic 30.0%
TCTGGTATTCAATGTATGTA+GGG + Chr2:5058276-5058295 MsG0280006692.01.T01:intron 30.0%
TGAAGAAACCATCAAAAAGA+AGG + Chr2:5059151-5059170 MsG0280006692.01.T01:CDS 30.0%
! CTTTGTTTGACTAGTTCATT+AGG + Chr2:5057491-5057510 MsG0280006692.01.T01:CDS 30.0%
! GATGCAATGTAGCTTTTATA+AGG + Chr2:5060657-5060676 MsG0280006692.01.T01:three_prime_UTR 30.0%
! GGATCATCAAGTTCAATTTT+TGG - Chr2:5059646-5059665 None:intergenic 30.0%
! TCAGCAGCATAAGTATTTTA+CGG - Chr2:5059667-5059686 None:intergenic 30.0%
! TCATTTCCATTTCTCCTTTT+TGG - Chr2:5059083-5059102 None:intergenic 30.0%
! TGCATTCTTTTCTTTTGTGT+CGG - Chr2:5059960-5059979 None:intergenic 30.0%
!! ATTTATGTGTGCTGTTTAAC+AGG + Chr2:5060393-5060412 MsG0280006692.01.T01:intron 30.0%
!! CTTTGCTATTTGATCTTTAC+CGG - Chr2:5060515-5060534 None:intergenic 30.0%
!! TTTGCTATTTGATCTTTACC+GGG - Chr2:5060514-5060533 None:intergenic 30.0%
!!! ATTCTTGTTTTTCTGGTCAT+GGG - Chr2:5058452-5058471 None:intergenic 30.0%
!!! TATTCTTGTTTTTCTGGTCA+TGG - Chr2:5058453-5058472 None:intergenic 30.0%
AAACTGACCTTGAATCATGA+AGG - Chr2:5059857-5059876 None:intergenic 35.0%
AAAGCATGCAGATGATCTTT+GGG + Chr2:5058336-5058355 MsG0280006692.01.T01:CDS 35.0%
AACTCTACTGAAGTTTCATC+TGG - Chr2:5058240-5058259 None:intergenic 35.0%
AAGATCTAACATCTCCAACA+AGG + Chr2:5059928-5059947 MsG0280006692.01.T01:intron 35.0%
AGAGATGAAGGAAATGAAAG+AGG + Chr2:5059524-5059543 MsG0280006692.01.T01:intron 35.0%
ATAAATCAAATGATGCTGCG+AGG + Chr2:5059254-5059273 MsG0280006692.01.T01:intron 35.0%
ATCACTCCAAAAAGGAGAAA+TGG + Chr2:5059074-5059093 MsG0280006692.01.T01:CDS 35.0%
ATGTCTGAAAAGAAAGGGAA+AGG - Chr2:5057892-5057911 None:intergenic 35.0%
ATGTGTGTGCCTATTAGATT+AGG + Chr2:5058120-5058139 MsG0280006692.01.T01:intron 35.0%
ATTGCAGCAATGAATGTGTT+AGG - Chr2:5057524-5057543 None:intergenic 35.0%
ATTGTGACTCAAAGAGATGA+AGG + Chr2:5059512-5059531 MsG0280006692.01.T01:intron 35.0%
CATTCATTGCTGCAATGTTA+AGG + Chr2:5057528-5057547 MsG0280006692.01.T01:CDS 35.0%
CTATGGTTCAAAAGAGCAAA+GGG + Chr2:5060261-5060280 MsG0280006692.01.T01:intron 35.0%
GAAACCATCAAAAAGAAGGT+TGG + Chr2:5059155-5059174 MsG0280006692.01.T01:CDS 35.0%
GATGATTCCTTCATGATTCA+AGG + Chr2:5059847-5059866 MsG0280006692.01.T01:intron 35.0%
GCCATATTTAGTAAGAACTG+AGG - Chr2:5057764-5057783 None:intergenic 35.0%
GCCTCAGTTCTTACTAAATA+TGG + Chr2:5057760-5057779 MsG0280006692.01.T01:intron 35.0%
GGAAGCTTGCATTAATTTCA+AGG + Chr2:5058297-5058316 MsG0280006692.01.T01:CDS 35.0%
TAGGAAGCAATTGGAAGAAA+AGG + Chr2:5060426-5060445 MsG0280006692.01.T01:CDS 35.0%
TCAACTACATCACTCCAAAA+AGG + Chr2:5059066-5059085 MsG0280006692.01.T01:CDS 35.0%
TCAATAGAAGCTCTTCTATC+AGG - Chr2:5060099-5060118 None:intergenic 35.0%
TCCAAGAATCGTGAAAATTG+CGG + Chr2:5059478-5059497 MsG0280006692.01.T01:intron 35.0%
TGGATCATCAGGAATTATAC+TGG + Chr2:5058411-5058430 MsG0280006692.01.T01:CDS 35.0%
TGTGTGTGCCTATTAGATTA+GGG + Chr2:5058121-5058140 MsG0280006692.01.T01:intron 35.0%
TTCAAAAGAGCAAAGGGAAA+AGG + Chr2:5060267-5060286 MsG0280006692.01.T01:intron 35.0%
TTTACCTTGTAGATTCACCA+TGG - Chr2:5060689-5060708 None:intergenic 35.0%
TTTCACTTATCTAAGGGGAT+TGG + Chr2:5057955-5057974 MsG0280006692.01.T01:intron 35.0%
TTTCCCTGATCTTTGTAACT+GGG - Chr2:5059582-5059601 None:intergenic 35.0%
! AAAAGCATGCAGATGATCTT+TGG + Chr2:5058335-5058354 MsG0280006692.01.T01:CDS 35.0%
! ACAAAGATCAGGGAAAGTAT+TGG + Chr2:5059586-5059605 MsG0280006692.01.T01:intron 35.0%
! ATCACCAACCTTCTTTTTGA+TGG - Chr2:5059162-5059181 None:intergenic 35.0%
! CTTTTATAAGGTATAGGCCA+TGG + Chr2:5060669-5060688 MsG0280006692.01.T01:three_prime_UTR 35.0%
! TTAGTGTCATTCAGTTCAAG+TGG + Chr2:5060635-5060654 MsG0280006692.01.T01:three_prime_UTR 35.0%
! TTTTGAACCATAGGCTTTCT+TGG - Chr2:5060254-5060273 None:intergenic 35.0%
! TTTTGTGTGAGAAACTCTGA+AGG + Chr2:5059404-5059423 MsG0280006692.01.T01:intron 35.0%
!! AAAAAGTGCTCTCTAGAAAC+TGG - Chr2:5057858-5057877 None:intergenic 35.0%
!! ATGCATTGGTCTTCTAACAT+GGG + Chr2:5058831-5058850 MsG0280006692.01.T01:CDS 35.0%
!! TATGCATTGGTCTTCTAACA+TGG + Chr2:5058830-5058849 MsG0280006692.01.T01:CDS 35.0%
!!! TTTCTCTTTTTAGTTGCTCG+TGG - Chr2:5058870-5058889 None:intergenic 35.0%
AACAGTTCTGTTAAGGTCAG+AGG + Chr2:5060590-5060609 MsG0280006692.01.T01:three_prime_UTR 40.0%
ACTGAAGTTTCATCTGGTAG+AGG - Chr2:5058234-5058253 None:intergenic 40.0%
AGATGTGAACTTATCGCACA+TGG + Chr2:5058683-5058702 MsG0280006692.01.T01:intron 40.0%
AGGAGAAATGGAAATGAGAG+TGG + Chr2:5059086-5059105 MsG0280006692.01.T01:CDS 40.0%
ATATATGGCGGTACGTTGTA+AGG - Chr2:5058741-5058760 None:intergenic 40.0%
ATATGCCAATGCATATGCCA+TGG + Chr2:5058715-5058734 MsG0280006692.01.T01:CDS 40.0%
CAGTTATCCTTAGATTCGCA+AGG - Chr2:5058016-5058035 None:intergenic 40.0%
CATCTATCTTCAAAAGGCTC+TGG - Chr2:5059325-5059344 None:intergenic 40.0%
CCTATGGTTCAAAAGAGCAA+AGG + Chr2:5060260-5060279 MsG0280006692.01.T01:intron 40.0%
CTTTCCCTGATCTTTGTAAC+TGG - Chr2:5059583-5059602 None:intergenic 40.0%
GCAATTGGAAGAAAAGGTGA+TGG + Chr2:5060432-5060451 MsG0280006692.01.T01:CDS 40.0%
GTCCATAAAGGTGAAAAACG+TGG + Chr2:5059203-5059222 MsG0280006692.01.T01:intron 40.0%
TATTTGATCTTTACCGGGCA+CGG - Chr2:5060509-5060528 None:intergenic 40.0%
TCATTGCAGAAGGTCCATAA+AGG + Chr2:5059191-5059210 MsG0280006692.01.T01:CDS 40.0%
TCCAGTGATCATCTGATTCA+GGG + Chr2:5058939-5058958 MsG0280006692.01.T01:intron 40.0%
TCTACAGACAGTATTCCTTC+TGG + Chr2:5058478-5058497 MsG0280006692.01.T01:intron 40.0%
TCTCATTCCTTGCGAATCTA+AGG + Chr2:5058006-5058025 MsG0280006692.01.T01:intron 40.0%
TGCACTTGAATCATTGCAGA+AGG + Chr2:5059181-5059200 MsG0280006692.01.T01:CDS 40.0%
TGTCCCAGTTACAAAGATCA+GGG + Chr2:5059576-5059595 MsG0280006692.01.T01:intron 40.0%
TTCCAGTGATCATCTGATTC+AGG + Chr2:5058938-5058957 MsG0280006692.01.T01:intron 40.0%
! ATCGCGTTTAAGGTATGAAC+TGG + Chr2:5057691-5057710 MsG0280006692.01.T01:intron 40.0%
! CCTTTGCTCTTTTGAACCAT+AGG - Chr2:5060263-5060282 None:intergenic 40.0%
! CTCTCATTTTCTGGATCATC+AGG + Chr2:5058400-5058419 MsG0280006692.01.T01:CDS 40.0%
! TCCGCAATTTTCACGATTCT+TGG - Chr2:5059482-5059501 None:intergenic 40.0%
! TGCCACGTTTTTCACCTTTA+TGG - Chr2:5059208-5059227 None:intergenic 40.0%
!! GAGCCTTTTGAAGATAGATG+CGG + Chr2:5059325-5059344 MsG0280006692.01.T01:intron 40.0%
!! TATACACGTAGTCTTGTTGC+TGG + Chr2:5057614-5057633 MsG0280006692.01.T01:CDS 40.0%
!! TATGAAGGCATTTGCTGACT+AGG - Chr2:5058780-5058799 None:intergenic 40.0%
ACTTCGAAAAGAGCAGGCAA+TGG + Chr2:5057589-5057608 MsG0280006692.01.T01:CDS 45.0%
AGATGCAATCGCTGATGTTC+AGG + Chr2:5059375-5059394 MsG0280006692.01.T01:intron 45.0%
AGCACTACTTCGAAAAGAGC+AGG + Chr2:5057583-5057602 MsG0280006692.01.T01:CDS 45.0%
AGGAAGATGCATCTGATGGA+GGG + Chr2:5059274-5059293 MsG0280006692.01.T01:intron 45.0%
AGGAGCAAATGACCTCTGTA+TGG + Chr2:5059993-5060012 MsG0280006692.01.T01:intron 45.0%
AGGGAAGAGGATCAGAAGAT+TGG + Chr2:5059701-5059720 MsG0280006692.01.T01:intron 45.0%
ATCTTCTGATCCTCTTCCCT+TGG - Chr2:5059701-5059720 None:intergenic 45.0%
CACTTATCTAAGGGGATTGG+AGG + Chr2:5057958-5057977 MsG0280006692.01.T01:intron 45.0%
CAGCAAATGCCTTCATACCA+AGG + Chr2:5058783-5058802 MsG0280006692.01.T01:CDS 45.0%
CATAGGCTTTCTTGGAGAGA+TGG - Chr2:5060246-5060265 None:intergenic 45.0%
CATCTCTCCAAGAAAGCCTA+TGG + Chr2:5060244-5060263 MsG0280006692.01.T01:intron 45.0%
CCTTAAAATGCACTGTGTGC+AGG - Chr2:5058087-5058106 None:intergenic 45.0%
GAAATGAAAGAGGATCGAGC+TGG + Chr2:5059534-5059553 MsG0280006692.01.T01:intron 45.0%
GAAGGTAAGGAGGATATCCT+TGG - Chr2:5058803-5058822 None:intergenic 45.0%
GCTGAAAGAACTGCATCTTC+CGG + Chr2:5060472-5060491 MsG0280006692.01.T01:CDS 45.0%
GGAAGATGCAGTTCTTTCAG+CGG - Chr2:5060473-5060492 None:intergenic 45.0%
GGAGGATATCCTTGGTATGA+AGG - Chr2:5058795-5058814 None:intergenic 45.0%
GGAGGGAACAAAATGAGAAC+TGG + Chr2:5059291-5059310 MsG0280006692.01.T01:intron 45.0%
GTGTCCCAGTTACAAAGATC+AGG + Chr2:5059575-5059594 MsG0280006692.01.T01:intron 45.0%
TAAGGCCATGGCATATGCAT+TGG - Chr2:5058723-5058742 None:intergenic 45.0%
TAGGCACATTTGGGGAATCA+TGG - Chr2:5059761-5059780 None:intergenic 45.0%
TAGGCCATGGTGAATCTACA+AGG + Chr2:5060682-5060701 MsG0280006692.01.T01:three_prime_UTR 45.0%
TCCCTGAATCAGATGATCAC+TGG - Chr2:5058943-5058962 None:intergenic 45.0%
TCTTCTGATCCTCTTCCCTT+GGG - Chr2:5059700-5059719 None:intergenic 45.0%
TGGATTCTGTTGAAGCCTCA+AGG + Chr2:5060037-5060056 MsG0280006692.01.T01:intron 45.0%
TTCATAGTCCATGGTCCTTG+AGG - Chr2:5060055-5060074 None:intergenic 45.0%
TTTGCAACGCGATTCAGGAT+TGG + Chr2:5060017-5060036 MsG0280006692.01.T01:intron 45.0%
! AATGCATTTTCGTCGCCAGA+AGG - Chr2:5058496-5058515 None:intergenic 45.0%
! CCTGCACACAGTGCATTTTA+AGG + Chr2:5058084-5058103 MsG0280006692.01.T01:intron 45.0%
! GATCCAGAAAATGAGAGTGC+TGG - Chr2:5058397-5058416 None:intergenic 45.0%
! GCTGATTCATCACAACCCAA+GGG + Chr2:5059682-5059701 MsG0280006692.01.T01:intron 45.0%
! GTGCTATTCGAGACTCCAAA+AGG - Chr2:5057568-5057587 None:intergenic 45.0%
!! ATGGTTTTGCAACGCGATTC+AGG + Chr2:5060012-5060031 MsG0280006692.01.T01:intron 45.0%
!! CATTTGGAGCATCGCGTTTA+AGG + Chr2:5057681-5057700 MsG0280006692.01.T01:CDS 45.0%
!! CCTTTTGAAGATAGATGCGG+CGG + Chr2:5059328-5059347 MsG0280006692.01.T01:intron 45.0%
!! CTTGTTTTTCTGGTCATGGG+CGG - Chr2:5058449-5058468 None:intergenic 45.0%
!! GAAAAGGTGATGGAAGACAG+AGG + Chr2:5060442-5060461 MsG0280006692.01.T01:CDS 45.0%
!! TGCTAGTTCTGCTCCAAACA+AGG + Chr2:5059442-5059461 MsG0280006692.01.T01:intron 45.0%
!! TGCTGATTCATCACAACCCA+AGG + Chr2:5059681-5059700 MsG0280006692.01.T01:intron 45.0%
!! TGTGTCGGTTTCTACCTTGT+TGG - Chr2:5059945-5059964 None:intergenic 45.0%
!!! TTGATCGCGCTGGTTTTCTT+TGG - Chr2:5060165-5060184 None:intergenic 45.0%
AGAACTGCATCTTCCGGTGT+TGG + Chr2:5060478-5060497 MsG0280006692.01.T01:CDS 50.0%
CCGCCGCATCTATCTTCAAA+AGG - Chr2:5059331-5059350 None:intergenic 50.0%
CGCGTTGCAAAACCATACAG+AGG - Chr2:5060008-5060027 None:intergenic 50.0%
GAGGAAGATGCATCTGATGG+AGG + Chr2:5059273-5059292 MsG0280006692.01.T01:intron 50.0%
TCATCACAACCCAAGGGAAG+AGG + Chr2:5059688-5059707 MsG0280006692.01.T01:intron 50.0%
TGCGAGGAAGATGCATCTGA+TGG + Chr2:5059270-5059289 MsG0280006692.01.T01:intron 50.0%
TGTTGAAGCCTCAAGGACCA+TGG + Chr2:5060044-5060063 MsG0280006692.01.T01:intron 50.0%
! CCACCAGCACTCTCATTTTC+TGG + Chr2:5058391-5058410 MsG0280006692.01.T01:CDS 50.0%
! GATTTCGCTGCAACGCCTTT+TGG + Chr2:5057550-5057569 MsG0280006692.01.T01:CDS 50.0%
!! CCAGAAAATGAGAGTGCTGG+TGG - Chr2:5058394-5058413 None:intergenic 50.0%
!! GACTTTGCTTTTGATCGCGC+TGG - Chr2:5060175-5060194 None:intergenic 50.0%
AAGATAGATGCGGCGGAGAC+TGG + Chr2:5059335-5059354 MsG0280006692.01.T01:intron 55.0%
GCGGCGGAGACTGGAATTGA+TGG + Chr2:5059344-5059363 MsG0280006692.01.T01:intron 60.0%
GGCGGTACGTTGTAAGGCCA+TGG - Chr2:5058735-5058754 None:intergenic 60.0%
GGGCACGGTTCGACCAACAC+CGG - Chr2:5060494-5060513 None:intergenic 65.0%
!! GGTGTTGGTCGAACCGTGCC+CGG + Chr2:5060493-5060512 MsG0280006692.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr2 gene 5057470 5060941 5057470 ID=MsG0280006692.01;Name=MsG0280006692.01
Chr2 mRNA 5057470 5060941 5057470 ID=MsG0280006692.01.T01;Parent=MsG0280006692.01;Name=MsG0280006692.01.T01;_AED=0.39;_eAED=0.39;_QI=0|0.2|0.16|1|1|1|6|365|371
Chr2 exon 5057470 5057702 5057470 ID=MsG0280006692.01.T01:exon:1906;Parent=MsG0280006692.01.T01
Chr2 exon 5058297 5058487 5058297 ID=MsG0280006692.01.T01:exon:1907;Parent=MsG0280006692.01.T01
Chr2 exon 5058685 5058942 5058685 ID=MsG0280006692.01.T01:exon:1908;Parent=MsG0280006692.01.T01
Chr2 exon 5059051 5059212 5059051 ID=MsG0280006692.01.T01:exon:1909;Parent=MsG0280006692.01.T01
Chr2 exon 5059703 5059812 5059703 ID=MsG0280006692.01.T01:exon:1910;Parent=MsG0280006692.01.T01
Chr2 exon 5060415 5060941 5060415 ID=MsG0280006692.01.T01:exon:1911;Parent=MsG0280006692.01.T01
Chr2 CDS 5057470 5057702 5057470 ID=MsG0280006692.01.T01:cds;Parent=MsG0280006692.01.T01
Chr2 CDS 5058297 5058487 5058297 ID=MsG0280006692.01.T01:cds;Parent=MsG0280006692.01.T01
Chr2 CDS 5058685 5058942 5058685 ID=MsG0280006692.01.T01:cds;Parent=MsG0280006692.01.T01
Chr2 CDS 5059051 5059212 5059051 ID=MsG0280006692.01.T01:cds;Parent=MsG0280006692.01.T01
Chr2 CDS 5059703 5059812 5059703 ID=MsG0280006692.01.T01:cds;Parent=MsG0280006692.01.T01
Chr2 CDS 5060415 5060576 5060415 ID=MsG0280006692.01.T01:cds;Parent=MsG0280006692.01.T01
Chr2 three_prime_UTR 5060577 5060941 5060577 ID=MsG0280006692.01.T01:three_prime_utr;Parent=MsG0280006692.01.T01
Gene Sequence

>MsG0280006692.01.T01

ATGTTGATGAAATCTAATCTCCTTTGTTTGACTAGTTCATTAGGAACTGTTCCTAACACATTCATTGCTGCAATGTTAAGGATTTCGCTGCAACGCCTTTTGGAGTCTCGAATAGCACTACTTCGAAAAGAGCAGGCAATGGCATATACACGTAGTCTTGTTGCTGGATTTGATATTGACAACATTGATGATCTTGTATATTTTGCAAATGCATTTGGAGCATCGCGTTTAAGGGAAGCTTGCATTAATTTCAAGGATTTATGGAAGAAGAAAAAGCATGCAGATGATCTTTGGGTTCAAGAAGTAGCTGCAATGCAATCAAACTTACCACCAGCACTCTCATTTTCTGGATCATCAGGAATTATACTGGCGAATGACATAGCCGCCCATGACCAGAAAAACAAGAATAATAGCTCTACAGACAATGTGAACTTATCGCACATGGCGAATGTTCATATGCCAATGCATATGCCATGGCCTTACAACGTACCGCCATATATGTATAATCTTCAAAATCCTAGTCAGCAAATGCCTTCATACCAAGGATATCCTCCTTACCTTCAAAATAATATGCATTGGTCTTCTAACATGGGAGTGAATCAAAAACCACGAGCAACTAAAAAGAGAAAATCTCATCATAGGAAAGGATCAGAAGAATATGAAGAGCAGCAAACAGATTCCATTGTGATACGTAATATCAACTACATCACTCCAAAAAGGAGAAATGGAAATGAGAGTGGAGTATCTGATGAATCTTCTTTAGAAGACGATGCTATCTTCGATGAAGAAACCATCAAAAAGAAGGTTGGTGATGCACTTGAATCATTGCAGAAGGTCCATAAAGGGAAGAGGATCAGAAGATTGGTTATTGTTGATAACAATTTGGAAAGTATGAGAAGCCATGATTCCCCAAATGTGCCTATAGTATTTGATGGTGATAGAACTTTATCATCAGAAGATGAAATTAGGAAGCAATTGGAAGAAAAGGTGATGGAAGACAGAGGAGAATCCGCTGAAAGAACTGCATCTTCCGGTGTTGGTCGAACCGTGCCCGGTAAAGATCAAATAGCAAAGATTTCTTCAAAACAGGACAAGAATAAGACTCAAAACTATTAA

Protein sequence

>MsG0280006692.01.T01

MLMKSNLLCLTSSLGTVPNTFIAAMLRISLQRLLESRIALLRKEQAMAYTRSLVAGFDIDNIDDLVYFANAFGASRLREACINFKDLWKKKKHADDLWVQEVAAMQSNLPPALSFSGSSGIILANDIAAHDQKNKNNSSTDNVNLSHMANVHMPMHMPWPYNVPPYMYNLQNPSQQMPSYQGYPPYLQNNMHWSSNMGVNQKPRATKKRKSHHRKGSEEYEEQQTDSIVIRNINYITPKRRNGNESGVSDESSLEDDAIFDEETIKKKVGDALESLQKVHKGKRIRRLVIVDNNLESMRSHDSPNVPIVFDGDRTLSSEDEIRKQLEEKVMEDRGESAERTASSGVGRTVPGKDQIAKISSKQDKNKTQNY*