AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880045707.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880045707.01.T01 MTR_8g077440 86.275 204 4 1 1 204 73 252 3.78e-120 341
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880045707.01.T01 AT3G51010 48.372 215 70 5 3 204 1 187 5.04e-56 176

Find 84 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTCCCTTGATTAGGCTTAT+TGG 0.196474 8:+63072378 None:intergenic
GGTGGGTGGCGGTGGGCCGC+TGG 0.220759 8:+63073772 None:intergenic
GTTGCGTGCTTTCGTGTTAA+TGG 0.250809 8:+63073714 None:intergenic
GTCTATGGCTTAAATTATTT+AGG 0.264247 8:-63071010 MsG0880045707.01.T01:exon
CTCCCTTGATTAGGCTTATT+GGG 0.266061 8:+63072379 None:intergenic
AGACGGTTCAAATTATTAAT+TGG 0.281969 8:+63070948 None:intergenic
TGGTTGGTGGTGGGTGGCGG+TGG 0.302438 8:+63073764 None:intergenic
AACTATAAGGTGCATGAGTT+TGG 0.323538 8:-63072134 MsG0880045707.01.T01:CDS
CTCTTGATGCTCCCTTGATT+AGG 0.327155 8:+63072370 None:intergenic
GTCGTCCAGGGCCTTATGCT+TGG 0.331141 8:-63072432 MsG0880045707.01.T01:intron
ATTAGGCTTATTGGGAAGTA+TGG 0.347303 8:+63072387 None:intergenic
TTCATGGAGTATAAACTATA+AGG 0.364353 8:-63072147 MsG0880045707.01.T01:CDS
TTGCGTGCTTTCGTGTTAAT+GGG 0.371163 8:+63073715 None:intergenic
TCTTCTTTGCAACCATCTTC+CGG 0.379881 8:-63072652 MsG0880045707.01.T01:CDS
GTGGGTGGCGGTGGGCCGCT+GGG 0.381686 8:+63073773 None:intergenic
GGTTGGTTGGTGGTGGGTGG+CGG 0.389072 8:+63073761 None:intergenic
TCGTCCAGGGCCTTATGCTT+GGG 0.393020 8:-63072431 MsG0880045707.01.T01:intron
GAGCGACGGTTGGTTGGTGG+TGG 0.396754 8:+63073754 None:intergenic
AGGAAACATATCATCTTTCA+TGG 0.397710 8:-63072163 MsG0880045707.01.T01:CDS
CAAGCTAGCCCGCTTTCGAC+GGG 0.400130 8:+63072537 None:intergenic
TAAGAAGGTAGAGCGTAAAA+TGG 0.403135 8:-63071106 MsG0880045707.01.T01:CDS
GGTGGTTTGCTGCCGGAAGA+TGG 0.417214 8:+63072640 None:intergenic
GCTAATATATACCAGTATAA+AGG 0.421466 8:+63072312 None:intergenic
GCTGTGAAAGTGGCTCAAAA+AGG 0.426398 8:+63072603 None:intergenic
TCAAGCTAGCCCGCTTTCGA+CGG 0.435563 8:+63072536 None:intergenic
TTATCAGAAGGTCGTCTCTT+GGG 0.451983 8:+63072562 None:intergenic
AAGAGAGTGGGCAGAAAGAC+TGG 0.452985 8:-63071067 MsG0880045707.01.T01:CDS
GCTTGGGTTGAACACACAAC+TGG 0.459757 8:-63072415 MsG0880045707.01.T01:CDS
CTTCCCAATAAGCCTAATCA+AGG 0.465217 8:-63072382 MsG0880045707.01.T01:CDS
AAAACTGACCTGAAAACTGA+TGG 0.466997 8:+63073691 None:intergenic
TTTGGAACAAAGGTGTTGTC+TGG 0.470280 8:-63072116 MsG0880045707.01.T01:CDS
TGATAAACCCCGTCGAAAGC+GGG 0.471130 8:-63072545 MsG0880045707.01.T01:CDS
GGTTGGTGGTGGGTGGCGGT+GGG 0.471297 8:+63073765 None:intergenic
GTGTGTTCAACCCAAGCATA+AGG 0.483354 8:+63072421 None:intergenic
GCAGCGCCGTGCCTTTATAC+TGG 0.484793 8:-63072323 MsG0880045707.01.T01:intron
TTTATCAGAAGGTCGTCTCT+TGG 0.486620 8:+63072561 None:intergenic
CGGGCTAGCTTGAGACCCTC+TGG 0.489778 8:-63072526 MsG0880045707.01.T01:intron
GGAGAGCGACGGTTGGTTGG+TGG 0.499459 8:+63073751 None:intergenic
GGCATTAACAATTGCAAATG+AGG 0.499920 8:+63070986 None:intergenic
AGCGACGGTTGGTTGGTGGT+GGG 0.500113 8:+63073755 None:intergenic
TCATTTGCAATTGTTAATGC+CGG 0.509743 8:-63070984 MsG0880045707.01.T01:three_prime_UTR
TTTCGACGGGGTTTATCAGA+AGG 0.512993 8:+63072550 None:intergenic
AGATTCGGAAGAGGAGTCCT+CGG 0.513910 8:-63072757 MsG0880045707.01.T01:CDS
GCGGAAGAAGAACGTTAAGA+AGG 0.519807 8:-63071121 MsG0880045707.01.T01:CDS
GAATTGGGGTGGTTTGCTGC+CGG 0.523920 8:+63072633 None:intergenic
TGATCTCACTCTCGTCGTCA+AGG 0.527754 8:-63072717 MsG0880045707.01.T01:CDS
CTCACTCTCGTCGTCAAGGA+CGG 0.532447 8:-63072713 MsG0880045707.01.T01:CDS
TGTAGGCGGAAAAGAAGAAA+AGG 0.538675 8:-63071167 MsG0880045707.01.T01:intron
AGAGGAGAGCGACGGTTGGT+TGG 0.548202 8:+63073748 None:intergenic
GACGGTTGGTTGGTGGTGGG+TGG 0.557346 8:+63073758 None:intergenic
TGTTGCTGTGAGAAAGAAGA+AGG 0.560710 8:+63073800 None:intergenic
TGTCTGTCAAGCTGTGAAAG+TGG 0.568033 8:+63072593 None:intergenic
GTAAAATGGCTGCAGTTGCA+AGG 0.569157 8:-63071092 MsG0880045707.01.T01:CDS
GAGGAGAGGAGAGCGACGGT+TGG 0.573324 8:+63073744 None:intergenic
CTGATAAACCCCGTCGAAAG+CGG 0.575794 8:-63072546 MsG0880045707.01.T01:CDS
TAAAATGGCTGCAGTTGCAA+GGG 0.587269 8:-63071091 MsG0880045707.01.T01:CDS
GGTTGCAAAGAAGAATGAAA+CGG 0.590402 8:+63072661 None:intergenic
AACAAAGGTGTTGTCTGGAG+TGG 0.591309 8:-63072111 MsG0880045707.01.T01:intron
GATTCGGAAGAGGAGTCCTC+GGG 0.593998 8:-63072756 MsG0880045707.01.T01:CDS
GGTTGAATTGCAGCGCCTTG+AGG 0.594805 8:-63071046 MsG0880045707.01.T01:CDS
AGTTGCAAGGGAAAGAGAGT+GGG 0.599831 8:-63071079 MsG0880045707.01.T01:CDS
AAACTGACCTGAAAACTGAT+GGG 0.600952 8:+63073692 None:intergenic
TCGTGTTAATGGGCTGAGAG+AGG 0.602161 8:+63073725 None:intergenic
GAAGATATAGTATGTGTAGA+CGG 0.603025 8:+63070931 None:intergenic
CTCAGATGCAAGAGGCTAAG+CGG 0.604543 8:-63071140 MsG0880045707.01.T01:CDS
CAGTTGCAAGGGAAAGAGAG+TGG 0.605780 8:-63071080 MsG0880045707.01.T01:CDS
GGTGCATGAGTTTGGAACAA+AGG 0.610852 8:-63072126 MsG0880045707.01.T01:CDS
ACGACGAGAGTGAGATCAGA+GGG 0.612151 8:+63072722 None:intergenic
TCTTCTTTCTCACAGCAACA+CGG 0.624449 8:-63073797 MsG0880045707.01.T01:five_prime_UTR
GAGAGAGGAGAGGAGAGCGA+CGG 0.630646 8:+63073740 None:intergenic
TTCCCAATAAGCCTAATCAA+GGG 0.632102 8:-63072381 MsG0880045707.01.T01:CDS
CTAATCAAGGGAGCATCAAG+AGG 0.644871 8:-63072369 MsG0880045707.01.T01:CDS
TATATACCAGTATAAAGGCA+CGG 0.647751 8:+63072317 None:intergenic
AAGGAAAGCTCAGATGCAAG+AGG 0.649661 8:-63071148 MsG0880045707.01.T01:CDS
AAGCTAGCCCGCTTTCGACG+GGG 0.650879 8:+63072538 None:intergenic
AGAATGAAACGGCAATGTGG+AGG 0.653637 8:+63072672 None:intergenic
AAGGGAAGAAGGAATTGGGG+TGG 0.654054 8:+63072622 None:intergenic
ATCAAGGGAGCATCAAGAGG+AGG 0.654645 8:-63072366 MsG0880045707.01.T01:CDS
GGAATGAGAAGAAACGCATG+AGG 0.662356 8:-63072345 MsG0880045707.01.T01:CDS
AGAAGAATGAAACGGCAATG+TGG 0.685252 8:+63072669 None:intergenic
GACGACGAGAGTGAGATCAG+AGG 0.687668 8:+63072721 None:intergenic
TTAATGGGCTGAGAGAGGAG+AGG 0.693145 8:+63073730 None:intergenic
TCACAGCAACACGGACCCAG+CGG 0.694597 8:-63073788 MsG0880045707.01.T01:five_prime_UTR
GAGGGCGTAAAACATTCCCG+AGG 0.745952 8:+63072740 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATAAAATGAAATTAAG+TGG + Chr8:63072436-63072455 None:intergenic 10.0%
!!! TTAATTTCATTTTATATATC+AGG - Chr8:63072437-63072456 MsG0880045707.01.T01:intron 10.0%
!!! TTCATTTTTTTAAAAAGAAT+AGG + Chr8:63073390-63073409 None:intergenic 10.0%
!! AATATAATTGTATGTTCATT+GGG - Chr8:63073521-63073540 MsG0880045707.01.T01:intron 15.0%
!! AATGAACATACAATTATATT+AGG + Chr8:63073521-63073540 None:intergenic 15.0%
!! AATGTAATTAATTGTTTGTT+AGG - Chr8:63071620-63071639 MsG0880045707.01.T01:intron 15.0%
!! TAATATAATTGTATGTTCAT+TGG - Chr8:63073520-63073539 MsG0880045707.01.T01:intron 15.0%
!! TATCAATATAAAATCAACAA+AGG + Chr8:63071227-63071246 None:intergenic 15.0%
!! TATTTAACATAAACTAATCT+TGG - Chr8:63072715-63072734 MsG0880045707.01.T01:CDS 15.0%
!! TCTCACAAAAAAAAAAAAAA+AGG + Chr8:63071432-63071451 None:intergenic 15.0%
!! AAAAAATGAAAGTTTCTCTA+TGG - Chr8:63073400-63073419 MsG0880045707.01.T01:intron 20.0%
!! AAAGTTCAAATTCTTCTATA+AGG + Chr8:63073441-63073460 None:intergenic 20.0%
!! TATGAGTTTCATTTAAATCT+TGG + Chr8:63073011-63073030 None:intergenic 20.0%
!! TCAGAGAAAAATTTGTATAT+TGG - Chr8:63071914-63071933 MsG0880045707.01.T01:intron 20.0%
!! TTATAGAAGAATTTGAACTT+TGG - Chr8:63073440-63073459 MsG0880045707.01.T01:intron 20.0%
!! TTATGAAGAATAATTGAATC+AGG - Chr8:63071190-63071209 MsG0880045707.01.T01:intron 20.0%
!!! AATTCTTCTATAAGGAATTT+TGG + Chr8:63073433-63073452 None:intergenic 20.0%
!!! ACTTTCTTATTTCTATTTTG+TGG + Chr8:63073102-63073121 None:intergenic 20.0%
!!! ATGAGTTGATTATAAAAACA+AGG + Chr8:63071859-63071878 None:intergenic 20.0%
!!! TTTCTATTTTGTGGTTATTA+TGG + Chr8:63073093-63073112 None:intergenic 20.0%
! AGACGGTTCAAATTATTAAT+TGG + Chr8:63073778-63073797 None:intergenic 25.0%
! AGCTGAAAAAACTATTGAAT+CGG - Chr8:63071808-63071827 MsG0880045707.01.T01:intron 25.0%
! ATACTTATGAACGATAGATA+AGG - Chr8:63072833-63072852 MsG0880045707.01.T01:intron 25.0%
! CTTTGTGAATATTGTTTACT+AGG - Chr8:63072540-63072559 MsG0880045707.01.T01:CDS 25.0%
! GATACCTTAAACATACATAT+AGG + Chr8:63073143-63073162 None:intergenic 25.0%
! GCTAATATATACCAGTATAA+AGG + Chr8:63072414-63072433 None:intergenic 25.0%
! GCTGAAAAACTAAATGTAAT+TGG - Chr8:63071771-63071790 MsG0880045707.01.T01:intron 25.0%
! GTCTATGGCTTAAATTATTT+AGG - Chr8:63073713-63073732 MsG0880045707.01.T01:five_prime_UTR 25.0%
! TTCATGGAGTATAAACTATA+AGG - Chr8:63072576-63072595 MsG0880045707.01.T01:CDS 25.0%
! TTGACCTATATGTATGTTTA+AGG - Chr8:63073136-63073155 MsG0880045707.01.T01:intron 25.0%
!! AAAATAAGGCATTTATGAGT+TGG - Chr8:63071526-63071545 MsG0880045707.01.T01:intron 25.0%
!! AATAGGACATGTATTTTGTT+AGG + Chr8:63073373-63073392 None:intergenic 25.0%
!! GTTATTCTAGCTATGTATTA+GGG - Chr8:63073322-63073341 MsG0880045707.01.T01:intron 25.0%
!! TGTTATTCTAGCTATGTATT+AGG - Chr8:63073321-63073340 MsG0880045707.01.T01:intron 25.0%
!! TTTTATGTTGTCTGATGATT+GGG - Chr8:63073821-63073840 MsG0880045707.01.T01:five_prime_UTR 25.0%
!!! CTTTTATTTTTGCTACAAGT+TGG + Chr8:63072810-63072829 None:intergenic 25.0%
!!! TCATACATTTTTAGTTCGTT+AGG - Chr8:63071875-63071894 MsG0880045707.01.T01:intron 25.0%
!!! TGAAATTGATTTTAGCCTTT+AGG - Chr8:63071146-63071165 MsG0880045707.01.T01:CDS 25.0%
AAGTAATTGAATCAGGATAG+TGG - Chr8:63071089-63071108 MsG0880045707.01.T01:CDS 30.0%
AGGAAACATATCATCTTTCA+TGG - Chr8:63072560-63072579 MsG0880045707.01.T01:CDS 30.0%
ATAACAGCAAAGAAAACATG+AGG + Chr8:63072782-63072801 None:intergenic 30.0%
ATGTTTATCCAAAGACCATT+TGG + Chr8:63073477-63073496 None:intergenic 30.0%
CCAGAATATATGATCCATTT+GGG - Chr8:63071455-63071474 MsG0880045707.01.T01:intron 30.0%
GAAGATATAGTATGTGTAGA+CGG + Chr8:63073795-63073814 None:intergenic 30.0%
GATAAACATAACTGTGATCA+TGG - Chr8:63073488-63073507 MsG0880045707.01.T01:intron 30.0%
GGTTATTATGGCTATAAGTA+TGG + Chr8:63073081-63073100 None:intergenic 30.0%
GTAGTGAAAGTAATTGAATC+AGG - Chr8:63071082-63071101 MsG0880045707.01.T01:CDS 30.0%
TATAATTGATGCAGCAGAAT+CGG - Chr8:63071735-63071754 MsG0880045707.01.T01:intron 30.0%
TATATACCAGTATAAAGGCA+CGG + Chr8:63072409-63072428 None:intergenic 30.0%
TCATTTGCAATTGTTAATGC+CGG - Chr8:63073739-63073758 MsG0880045707.01.T01:five_prime_UTR 30.0%
TCCAGAATATATGATCCATT+TGG - Chr8:63071454-63071473 MsG0880045707.01.T01:intron 30.0%
TGATTTGAGCTTAAGGTTAA+CGG + Chr8:63071672-63071691 None:intergenic 30.0%
TTTCAGTAACGAAAACCTAA+AGG + Chr8:63071164-63071183 None:intergenic 30.0%
! AGGAAGTTGAGTAATTTTCA+CGG - Chr8:63071491-63071510 MsG0880045707.01.T01:intron 30.0%
! GTTTTATGTTGTCTGATGAT+TGG - Chr8:63073820-63073839 MsG0880045707.01.T01:five_prime_UTR 30.0%
! TTATGAGTTGGATATTCCAA+CGG - Chr8:63071538-63071557 MsG0880045707.01.T01:intron 30.0%
!! AGAAGTACTAGTGTTTATGA+TGG + Chr8:63072922-63072941 None:intergenic 30.0%
!! ATATTGATAGTGTAGTAACC+CGG - Chr8:63071238-63071257 MsG0880045707.01.T01:intron 30.0%
!! TCTCAATTGATTTGAGCTTA+AGG + Chr8:63071679-63071698 None:intergenic 30.0%
!! TTGTATATTGGTGATGTTGT+AGG - Chr8:63071926-63071945 MsG0880045707.01.T01:intron 30.0%
AAAAAGGGAAGAAGGAATTG+GGG + Chr8:63072107-63072126 None:intergenic 35.0%
AAAACTGACCTGAAAACTGA+TGG + Chr8:63071035-63071054 None:intergenic 35.0%
AAACTGACCTGAAAACTGAT+GGG + Chr8:63071034-63071053 None:intergenic 35.0%
AAATCTTGGACCATCTGTAT+TGG + Chr8:63072997-63073016 None:intergenic 35.0%
AACTATAAGGTGCATGAGTT+TGG - Chr8:63072589-63072608 MsG0880045707.01.T01:CDS 35.0%
AAGTGTCAACTAAAGCTAGA+AGG - Chr8:63073223-63073242 MsG0880045707.01.T01:intron 35.0%
AATCTTGGACCATCTGTATT+GGG + Chr8:63072996-63073015 None:intergenic 35.0%
AGAAAAATGAGATTCGGAAG+AGG - Chr8:63071957-63071976 MsG0880045707.01.T01:intron 35.0%
ATAAGAAAGTGACAACTGAG+AGG - Chr8:63073112-63073131 MsG0880045707.01.T01:intron 35.0%
ATACCAAGTGAACATGTCTA+GGG - Chr8:63071310-63071329 MsG0880045707.01.T01:intron 35.0%
ATTAGGCTTATTGGGAAGTA+TGG + Chr8:63072339-63072358 None:intergenic 35.0%
ATTTGGGTGAAGGATGATAT+AGG - Chr8:63071471-63071490 MsG0880045707.01.T01:intron 35.0%
CAAAAAGGGAAGAAGGAATT+GGG + Chr8:63072108-63072127 None:intergenic 35.0%
CATACTATCATACCAGTATG+TGG - Chr8:63073162-63073181 MsG0880045707.01.T01:intron 35.0%
CCCAAATGGATCATATATTC+TGG + Chr8:63071458-63071477 None:intergenic 35.0%
GACTCACACATGTAAATCAA+AGG + Chr8:63072492-63072511 None:intergenic 35.0%
GATGAATTAGTTGAGAGACT+TGG - Chr8:63071571-63071590 MsG0880045707.01.T01:intron 35.0%
GGAAGAGAAGAAAAAGTCTA+TGG - Chr8:63073698-63073717 MsG0880045707.01.T01:intron 35.0%
GGCATTAACAATTGCAAATG+AGG + Chr8:63073740-63073759 None:intergenic 35.0%
GGCTTCAAAGGGTAAAAATA+AGG - Chr8:63071512-63071531 MsG0880045707.01.T01:intron 35.0%
GGTTGCAAAGAAGAATGAAA+CGG + Chr8:63072065-63072084 None:intergenic 35.0%
GTGTAGATTACTATGGTGAA+TGG - Chr8:63071830-63071849 MsG0880045707.01.T01:intron 35.0%
TAAGAAGGTAGAGCGTAAAA+TGG - Chr8:63073617-63073636 MsG0880045707.01.T01:intron 35.0%
TATATCAGCCAAATGGTCTT+TGG - Chr8:63073466-63073485 MsG0880045707.01.T01:intron 35.0%
TATATCATCCTTCACCCAAA+TGG + Chr8:63071472-63071491 None:intergenic 35.0%
TATATGATCCATTTGGGTGA+AGG - Chr8:63071461-63071480 MsG0880045707.01.T01:intron 35.0%
TCAAAAAGGGAAGAAGGAAT+TGG + Chr8:63072109-63072128 None:intergenic 35.0%
TGAATCGGTGTAGATTACTA+TGG - Chr8:63071823-63071842 MsG0880045707.01.T01:intron 35.0%
TGCACGAGAAAAATGAGATT+CGG - Chr8:63071951-63071970 MsG0880045707.01.T01:intron 35.0%
TGGTCAAGTTCTATGTAAAG+TGG - Chr8:63071591-63071610 MsG0880045707.01.T01:intron 35.0%
TTCATCATGATACTAACCGT+TGG + Chr8:63071557-63071576 None:intergenic 35.0%
TTCCCAATAAGCCTAATCAA+GGG - Chr8:63072342-63072361 MsG0880045707.01.T01:CDS 35.0%
TTGGTTGTATATCAGCCAAA+TGG - Chr8:63073459-63073478 MsG0880045707.01.T01:intron 35.0%
! AATATTTTTCTCCTTCGTCC+AGG - Chr8:63071645-63071664 MsG0880045707.01.T01:intron 35.0%
! AGTAATTTTCACGGCTTCAA+AGG - Chr8:63071500-63071519 MsG0880045707.01.T01:intron 35.0%
! ATTCTAGCTATGTATTAGGG+AGG - Chr8:63073325-63073344 MsG0880045707.01.T01:intron 35.0%
! GTAATTTTCACGGCTTCAAA+GGG - Chr8:63071501-63071520 MsG0880045707.01.T01:intron 35.0%
! TTAATGCCGGTCAAGTTTTT+GGG - Chr8:63073752-63073771 MsG0880045707.01.T01:five_prime_UTR 35.0%
!! AAGCATCGACTTCTCAAATT+TGG + Chr8:63071362-63071381 None:intergenic 35.0%
!! ACTTTTTCTTCTCTTCCTCA+AGG + Chr8:63073695-63073714 None:intergenic 35.0%
!! TATTGATAGTGTAGTAACCC+GGG - Chr8:63071239-63071258 MsG0880045707.01.T01:intron 35.0%
!!! TTGGGAACTTTTTTGCATGT+AGG - Chr8:63073539-63073558 MsG0880045707.01.T01:intron 35.0%
AATTGGCCCAAAAACTTGAC+CGG + Chr8:63073761-63073780 None:intergenic 40.0%
ACAGCCAATTATTTGCCACA+GGG + Chr8:63073202-63073221 None:intergenic 40.0%
ACTCCATTACCCAATACAGA+TGG - Chr8:63072984-63073003 MsG0880045707.01.T01:intron 40.0%
AGAAGAATGAAACGGCAATG+TGG + Chr8:63072057-63072076 None:intergenic 40.0%
CATACCAAGTGAACATGTCT+AGG - Chr8:63071309-63071328 MsG0880045707.01.T01:intron 40.0%
CTAGACATGTTCACTTGGTA+TGG + Chr8:63071311-63071330 None:intergenic 40.0%
CTCCCTTGATTAGGCTTATT+GGG + Chr8:63072347-63072366 None:intergenic 40.0%
CTGTGAAAGTGGCTCAAAAA+GGG + Chr8:63072122-63072141 None:intergenic 40.0%
CTTCCCAATAAGCCTAATCA+AGG - Chr8:63072341-63072360 MsG0880045707.01.T01:CDS 40.0%
TAAAATGGCTGCAGTTGCAA+GGG - Chr8:63073632-63073651 MsG0880045707.01.T01:intron 40.0%
TATGATGAACTTGTCGTCCA+GGG - Chr8:63072279-63072298 MsG0880045707.01.T01:intron 40.0%
TCTATCACTCCATTAGACAG+TGG + Chr8:63071389-63071408 None:intergenic 40.0%
TCTTCGCATATTTCATAGCC+CGG + Chr8:63071260-63071279 None:intergenic 40.0%
TCTTCTTTCTCACAGCAACA+CGG - Chr8:63070926-63070945 MsG0880045707.01.T01:three_prime_UTR 40.0%
TCTTCTTTGCAACCATCTTC+CGG - Chr8:63072071-63072090 MsG0880045707.01.T01:intron 40.0%
TGTAGGCGGAAAAGAAGAAA+AGG - Chr8:63073556-63073575 MsG0880045707.01.T01:intron 40.0%
TGTTGCTGTGAGAAAGAAGA+AGG + Chr8:63070926-63070945 None:intergenic 40.0%
TTATCAGAAGGTCGTCTCTT+GGG + Chr8:63072164-63072183 None:intergenic 40.0%
TTATGATGAACTTGTCGTCC+AGG - Chr8:63072278-63072297 MsG0880045707.01.T01:intron 40.0%
TTGCGTGCTTTCGTGTTAAT+GGG + Chr8:63071011-63071030 None:intergenic 40.0%
TTTATCAGAAGGTCGTCTCT+TGG + Chr8:63072165-63072184 None:intergenic 40.0%
! GTTAATGCCGGTCAAGTTTT+TGG - Chr8:63073751-63073770 MsG0880045707.01.T01:five_prime_UTR 40.0%
!! CACAGTGAAAGCATCTTTAG+AGG - Chr8:63072869-63072888 MsG0880045707.01.T01:intron 40.0%
!! CTGTATTGGGTAATGGAGTT+AGG + Chr8:63072983-63073002 None:intergenic 40.0%
!! GGGTAATGGAGTTAGGTTTA+TGG + Chr8:63072976-63072995 None:intergenic 40.0%
!! GTTATGAGAGAGCATCAAGA+TGG + Chr8:63072741-63072760 None:intergenic 40.0%
!! TTTGGAACAAAGGTGTTGTC+TGG - Chr8:63072607-63072626 MsG0880045707.01.T01:CDS 40.0%
!!! GGAACTTTTTTGCATGTAGG+CGG - Chr8:63073542-63073561 MsG0880045707.01.T01:intron 40.0%
AAGGAAAGCTCAGATGCAAG+AGG - Chr8:63073575-63073594 MsG0880045707.01.T01:intron 45.0%
AGAATGAAACGGCAATGTGG+AGG + Chr8:63072054-63072073 None:intergenic 45.0%
AGCAGCAGCTGACAGATAAA+TGG + Chr8:63073301-63073320 None:intergenic 45.0%
AGCCAATTATTTGCCACAGG+GGG + Chr8:63073200-63073219 None:intergenic 45.0%
AGTGGCTCAAAAAGGGAAGA+AGG + Chr8:63072115-63072134 None:intergenic 45.0%
AGTTGCAAGGGAAAGAGAGT+GGG - Chr8:63073644-63073663 MsG0880045707.01.T01:intron 45.0%
CAGCCAATTATTTGCCACAG+GGG + Chr8:63073201-63073220 None:intergenic 45.0%
CAGTAATACGGACCACATAC+TGG + Chr8:63073177-63073196 None:intergenic 45.0%
CTCTTGATGCTCCCTTGATT+AGG + Chr8:63072356-63072375 None:intergenic 45.0%
CTTCGCATATTTCATAGCCC+GGG + Chr8:63071259-63071278 None:intergenic 45.0%
GACAGCCAATTATTTGCCAC+AGG + Chr8:63073203-63073222 None:intergenic 45.0%
GCGCTGAGGCTAAATTGATT+TGG - Chr8:63073269-63073288 MsG0880045707.01.T01:intron 45.0%
GCGGAAGAAGAACGTTAAGA+AGG - Chr8:63073602-63073621 MsG0880045707.01.T01:intron 45.0%
GCTCCCTTGATTAGGCTTAT+TGG + Chr8:63072348-63072367 None:intergenic 45.0%
GCTGTGAAAGTGGCTCAAAA+AGG + Chr8:63072123-63072142 None:intergenic 45.0%
GGAATGAGAAGAAACGCATG+AGG - Chr8:63072378-63072397 MsG0880045707.01.T01:CDS 45.0%
GGACCATCTGTATTGGGTAA+TGG + Chr8:63072990-63073009 None:intergenic 45.0%
GTAAAATGGCTGCAGTTGCA+AGG - Chr8:63073631-63073650 MsG0880045707.01.T01:intron 45.0%
GTGTGTTCAACCCAAGCATA+AGG + Chr8:63072305-63072324 None:intergenic 45.0%
GTTGCGTGCTTTCGTGTTAA+TGG + Chr8:63071012-63071031 None:intergenic 45.0%
TACAACTTCACAATGCGCTG+AGG - Chr8:63073255-63073274 MsG0880045707.01.T01:intron 45.0%
TGCTTTCTGCCACTGTCTAA+TGG - Chr8:63071377-63071396 MsG0880045707.01.T01:intron 45.0%
TGTCTGTCAAGCTGTGAAAG+TGG + Chr8:63072133-63072152 None:intergenic 45.0%
TTTCGACGGGGTTTATCAGA+AGG + Chr8:63072176-63072195 None:intergenic 45.0%
! GGTGCATGAGTTTGGAACAA+AGG - Chr8:63072597-63072616 MsG0880045707.01.T01:CDS 45.0%
!! AACAAAGGTGTTGTCTGGAG+TGG - Chr8:63072612-63072631 MsG0880045707.01.T01:CDS 45.0%
!! CTAATCAAGGGAGCATCAAG+AGG - Chr8:63072354-63072373 MsG0880045707.01.T01:CDS 45.0%
AAGAGAGTGGGCAGAAAGAC+TGG - Chr8:63073656-63073675 MsG0880045707.01.T01:intron 50.0%
AAGGGAAGAAGGAATTGGGG+TGG + Chr8:63072104-63072123 None:intergenic 50.0%
ACGACGAGAGTGAGATCAGA+GGG + Chr8:63072004-63072023 None:intergenic 50.0%
AGATTCGGAAGAGGAGTCCT+CGG - Chr8:63071966-63071985 MsG0880045707.01.T01:intron 50.0%
CAGTTGCAAGGGAAAGAGAG+TGG - Chr8:63073643-63073662 MsG0880045707.01.T01:intron 50.0%
CGTCCCTAGACATGTTCACT+TGG + Chr8:63071316-63071335 None:intergenic 50.0%
CTCAGATGCAAGAGGCTAAG+CGG - Chr8:63073583-63073602 MsG0880045707.01.T01:intron 50.0%
CTGATAAACCCCGTCGAAAG+CGG - Chr8:63072177-63072196 MsG0880045707.01.T01:intron 50.0%
TGATAAACCCCGTCGAAAGC+GGG - Chr8:63072178-63072197 MsG0880045707.01.T01:intron 50.0%
TGATCTCACTCTCGTCGTCA+AGG - Chr8:63072006-63072025 MsG0880045707.01.T01:intron 50.0%
TGCCCCCTGTGGCAAATAAT+TGG - Chr8:63073195-63073214 MsG0880045707.01.T01:intron 50.0%
! CACGCAACCCATCAGTTTTC+AGG - Chr8:63071024-63071043 MsG0880045707.01.T01:CDS 50.0%
! GAGCTTAAGGTTAACGGACC+TGG + Chr8:63071666-63071685 None:intergenic 50.0%
!! ATCAAGGGAGCATCAAGAGG+AGG - Chr8:63072357-63072376 MsG0880045707.01.T01:CDS 50.0%
!! GCTTGGGTTGAACACACAAC+TGG - Chr8:63072308-63072327 MsG0880045707.01.T01:intron 50.0%
!! TCGTGTTAATGGGCTGAGAG+AGG + Chr8:63071001-63071020 None:intergenic 50.0%
!! TTAATGGGCTGAGAGAGGAG+AGG + Chr8:63070996-63071015 None:intergenic 50.0%
AAGCAACGCAACGCACCAGA+GGG + Chr8:63072215-63072234 None:intergenic 55.0%
CTCACTCTCGTCGTCAAGGA+CGG - Chr8:63072010-63072029 MsG0880045707.01.T01:intron 55.0%
GACGACGAGAGTGAGATCAG+AGG + Chr8:63072005-63072024 None:intergenic 55.0%
GATTCGGAAGAGGAGTCCTC+GGG - Chr8:63071967-63071986 MsG0880045707.01.T01:intron 55.0%
GGTTGAATTGCAGCGCCTTG+AGG - Chr8:63073677-63073696 MsG0880045707.01.T01:intron 55.0%
TCAACCCAAGCATAAGGCCC+TGG + Chr8:63072299-63072318 None:intergenic 55.0%
TCAAGCTAGCCCGCTTTCGA+CGG + Chr8:63072190-63072209 None:intergenic 55.0%
TGCCACAGGGGGCAGTAATA+CGG + Chr8:63073189-63073208 None:intergenic 55.0%
! AGGTTAACGGACCTGGACGA+AGG + Chr8:63071659-63071678 None:intergenic 55.0%
! GAGGGCGTAAAACATTCCCG+AGG + Chr8:63071986-63072005 None:intergenic 55.0%
! TCGTCCAGGGCCTTATGCTT+GGG - Chr8:63072292-63072311 MsG0880045707.01.T01:intron 55.0%
!! GAATTGGGGTGGTTTGCTGC+CGG + Chr8:63072093-63072112 None:intergenic 55.0%
AAGCTAGCCCGCTTTCGACG+GGG + Chr8:63072188-63072207 None:intergenic 60.0%
AGAGGAGAGCGACGGTTGGT+TGG + Chr8:63070978-63070997 None:intergenic 60.0%
CAAGCTAGCCCGCTTTCGAC+GGG + Chr8:63072189-63072208 None:intergenic 60.0%
GAAGCAACGCAACGCACCAG+AGG + Chr8:63072216-63072235 None:intergenic 60.0%
GAGAGAGGAGAGGAGAGCGA+CGG + Chr8:63070986-63071005 None:intergenic 60.0%
GCAGCGCCGTGCCTTTATAC+TGG - Chr8:63072400-63072419 MsG0880045707.01.T01:CDS 60.0%
GTCCGTATTACTGCCCCCTG+TGG - Chr8:63073184-63073203 MsG0880045707.01.T01:intron 60.0%
TCACAGCAACACGGACCCAG+CGG - Chr8:63070935-63070954 MsG0880045707.01.T01:three_prime_UTR 60.0%
! GTCGTCCAGGGCCTTATGCT+TGG - Chr8:63072291-63072310 MsG0880045707.01.T01:intron 60.0%
!! AGCGACGGTTGGTTGGTGGT+GGG + Chr8:63070971-63070990 None:intergenic 60.0%
!! GGTGGTTTGCTGCCGGAAGA+TGG + Chr8:63072086-63072105 None:intergenic 60.0%
GAGGAGAGGAGAGCGACGGT+TGG + Chr8:63070982-63071001 None:intergenic 65.0%
! GGAGAGCGACGGTTGGTTGG+TGG + Chr8:63070975-63070994 None:intergenic 65.0%
!! CGGGCTAGCTTGAGACCCTC+TGG - Chr8:63072197-63072216 MsG0880045707.01.T01:intron 65.0%
!! GACGGTTGGTTGGTGGTGGG+TGG + Chr8:63070968-63070987 None:intergenic 65.0%
!! GAGCGACGGTTGGTTGGTGG+TGG + Chr8:63070972-63070991 None:intergenic 65.0%
!! GGTTGGTTGGTGGTGGGTGG+CGG + Chr8:63070965-63070984 None:intergenic 65.0%
!! GGTTGGTGGTGGGTGGCGGT+GGG + Chr8:63070961-63070980 None:intergenic 70.0%
!! TGGTTGGTGGTGGGTGGCGG+TGG + Chr8:63070962-63070981 None:intergenic 70.0%
!! GTGGGTGGCGGTGGGCCGCT+GGG + Chr8:63070953-63070972 None:intergenic 80.0%
!! GGTGGGTGGCGGTGGGCCGC+TGG + Chr8:63070954-63070973 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
Chr8 gene 63070865 63073880 63070865 ID=MsG0880045707.01;Name=MsG0880045707.01
Chr8 mRNA 63070865 63073880 63070865 ID=MsG0880045707.01.T01;Parent=MsG0880045707.01;Name=MsG0880045707.01.T01;_AED=0.35;_eAED=0.40;_QI=196|0.5|0.8|1|0.75|0.6|5|155|204
Chr8 exon 63070865 63071184 63070865 ID=MsG0880045707.01.T01:exon:24092;Parent=MsG0880045707.01.T01
Chr8 exon 63072112 63072183 63072112 ID=MsG0880045707.01.T01:exon:24091;Parent=MsG0880045707.01.T01
Chr8 exon 63072324 63072445 63072324 ID=MsG0880045707.01.T01:exon:24090;Parent=MsG0880045707.01.T01
Chr8 exon 63072527 63072797 63072527 ID=MsG0880045707.01.T01:exon:24089;Parent=MsG0880045707.01.T01
Chr8 exon 63073700 63073880 63073700 ID=MsG0880045707.01.T01:exon:24088;Parent=MsG0880045707.01.T01
Chr8 five_prime_UTR 63073700 63073880 63073700 ID=MsG0880045707.01.T01:five_prime_utr;Parent=MsG0880045707.01.T01
Chr8 five_prime_UTR 63072783 63072797 63072783 ID=MsG0880045707.01.T01:five_prime_utr;Parent=MsG0880045707.01.T01
Chr8 CDS 63072527 63072782 63072527 ID=MsG0880045707.01.T01:cds;Parent=MsG0880045707.01.T01
Chr8 CDS 63072324 63072445 63072324 ID=MsG0880045707.01.T01:cds;Parent=MsG0880045707.01.T01
Chr8 CDS 63072112 63072183 63072112 ID=MsG0880045707.01.T01:cds;Parent=MsG0880045707.01.T01
Chr8 CDS 63071020 63071184 63071020 ID=MsG0880045707.01.T01:cds;Parent=MsG0880045707.01.T01
Chr8 three_prime_UTR 63070865 63071019 63070865 ID=MsG0880045707.01.T01:three_prime_utr;Parent=MsG0880045707.01.T01
Gene Sequence

>MsG0880045707.01.T01

ATGAGATTCGGAAGAGGAGTCCTCGGGAATGTTTTACGCCCTCTGATCTCACTCTCGTCGTCAAGGACGGTAGCAACTTCACAAATCTCCTCCACATTGCCGTTTCATTCTTCTTTGCAACCATCTTCCGGCAGCAAACCACCCCAATTCCTTCTTCCCTTTTTGAGCCACTTTCACAGCTTGACAGACACTCGTTTTCCCAAGAGACGACCTTCTGATAAACCCCGTCGAAAGCGGGCTAGCTTGAGACCCTCTGGGCCTTATGCTTGGGTTGAACACACAACTGGCGAGACCATACTTCCCAATAAGCCTAATCAAGGGAGCATCAAGAGGAGGAATGAGAAGAAACGCATGAGGCAGCGCCGTGCCTTTATACTGGAAACATATCATCTTTCATGGAGTATAAACTATAAGGTGCATGAGTTTGGAACAAAGGTGTTGTCTGGAGTGGCGGAAAAGAAGAAAAGGAAAGCTCAGATGCAAGAGGCTAAGCGGAAGAAGAACGTTAAGAAGGTAGAGCGTAAAATGGCTGCAGTTGCAAGGGAAAGAGAGTGGGCAGAAAGACTGGTTGAATTGCAGCGCCTTGAGGAAGAGAAGAAAAAGTCTATGGCTTAA
Protein sequence

>MsG0880045707.01.T01

MRFGRGVLGNVLRPLISLSSSRTVATSQISSTLPFHSSLQPSSGSKPPQFLLPFLSHFHSLTDTRFPKRRPSDKPRRKRASLRPSGPYAWVEHTTGETILPNKPNQGSIKRRNEKKRMRQRRAFILETYHLSWSINYKVHEFGTKVLSGVAEKKKRKAQMQEAKRKKNVKKVERKMAAVAREREWAERLVELQRLEEEKKKSMA*