Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006346.01.T01 | XP_003593015.1 | 100 | 192 | 0 | 0 | 1 | 192 | 262 | 453 | 6.83E-133 | 390 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006346.01.T01 | Q8H107 | 85.417 | 192 | 28 | 0 | 1 | 192 | 273 | 464 | 3.34E-119 | 348 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006346.01.T01 | G7IPF6 | 100.000 | 192 | 0 | 0 | 1 | 192 | 262 | 453 | 3.26e-133 | 390 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048761.01 | MsG0280006346.01 | 0.812448 | 4.218303e-51 | 2.682946e-48 |
| MsG0180000240.01 | MsG0280006346.01 | 0.858281 | 9.175679e-63 | 2.329540e-59 |
| MsG0180004298.01 | MsG0280006346.01 | 0.803675 | 3.113582e-49 | 1.574124e-46 |
| MsG0180005457.01 | MsG0280006346.01 | -0.821963 | 3.052641e-53 | 2.520556e-50 |
| MsG0180006210.01 | MsG0280006346.01 | 0.802569 | 5.272427e-49 | 2.591231e-46 |
| MsG0280006346.01 | MsG0280007864.01 | 0.853073 | 3.040502e-61 | 6.488953e-58 |
| MsG0280006346.01 | MsG0380012085.01 | -0.811160 | 8.046041e-51 | 4.943944e-48 |
| MsG0280006346.01 | MsG0380012279.01 | 0.839787 | 1.285726e-57 | 1.794709e-54 |
| MsG0280006346.01 | MsG0380015849.01 | 0.801118 | 1.047021e-48 | 4.960126e-46 |
| MsG0280006346.01 | MsG0380017048.01 | -0.812250 | 4.659272e-51 | 2.947601e-48 |
| MsG0280006346.01 | MsG0380017178.01 | 0.806377 | 8.471483e-50 | 4.590926e-47 |
| MsG0280006346.01 | MsG0380017220.01 | -0.836492 | 9.064738e-57 | 1.144145e-53 |
| MsG0280006346.01 | MsG0380017551.01 | 0.805615 | 1.225258e-49 | 6.511807e-47 |
| MsG0280006346.01 | MsG0480018236.01 | -0.823484 | 1.351191e-53 | 1.164938e-50 |
| MsG0280006346.01 | MsG0480018318.01 | -0.814189 | 1.749119e-51 | 1.165724e-48 |
| MsG0280006346.01 | MsG0480018883.01 | -0.814129 | 1.802446e-51 | 1.199344e-48 |
| MsG0280006346.01 | MsG0480020323.01 | -0.816875 | 4.414414e-52 | 3.165741e-49 |
| MsG0280006346.01 | MsG0480020832.01 | -0.806453 | 8.166036e-50 | 4.434176e-47 |
| MsG0280006346.01 | MsG0480020935.01 | 0.811804 | 5.827642e-51 | 3.642336e-48 |
| MsG0280006346.01 | MsG0480022615.01 | 0.860115 | 2.587011e-63 | 6.994094e-60 |
| MsG0280006346.01 | MsG0480023251.01 | -0.802947 | 4.405685e-49 | 2.186185e-46 |
| MsG0280006346.01 | MsG0480023936.01 | 0.845354 | 4.280008e-59 | 7.113475e-56 |
| MsG0280006346.01 | MsG0580024363.01 | 0.908592 | 1.443919e-81 | 2.697117e-77 |
| MsG0280006346.01 | MsG0580024928.01 | 0.839816 | 1.263589e-57 | 1.765426e-54 |
| MsG0280006346.01 | MsG0580025407.01 | 0.835851 | 1.318866e-56 | 1.632842e-53 |
| MsG0280006346.01 | MsG0580025832.01 | -0.813802 | 2.128556e-51 | 1.403837e-48 |
| MsG0280006346.01 | MsG0580026304.01 | -0.810108 | 1.357632e-50 | 8.113446e-48 |
| MsG0280006346.01 | MsG0580027886.01 | 0.832155 | 1.110953e-55 | 1.231256e-52 |
| MsG0280006346.01 | MsG0580028428.01 | -0.804429 | 2.169639e-49 | 1.118368e-46 |
| MsG0280006346.01 | MsG0580029999.01 | 0.836548 | 8.774961e-57 | 1.109436e-53 |
| MsG0280006346.01 | MsG0680030843.01 | 0.805205 | 1.493802e-49 | 7.855828e-47 |
| MsG0280006346.01 | MsG0680031740.01 | 0.801714 | 7.905351e-49 | 3.801597e-46 |
| MsG0280006346.01 | MsG0680032058.01 | -0.811133 | 8.152985e-51 | 5.006380e-48 |
| MsG0280006346.01 | MsG0680032460.01 | 0.800761 | 1.238144e-48 | 5.812441e-46 |
| MsG0280006346.01 | MsG0680033639.01 | -0.804774 | 1.838288e-49 | 9.561004e-47 |
| MsG0280006346.01 | MsG0680034909.01 | 0.819146 | 1.353797e-52 | 1.033311e-49 |
| MsG0280006346.01 | MsG0680035708.01 | -0.819093 | 1.391738e-52 | 1.060788e-49 |
| MsG0280006346.01 | MsG0780037105.01 | -0.802272 | 6.070850e-49 | 2.961240e-46 |
| MsG0280006346.01 | MsG0780037457.01 | -0.820586 | 6.342863e-53 | 5.039058e-50 |
| MsG0280006346.01 | MsG0780039867.01 | 0.851810 | 6.964205e-61 | 1.426355e-57 |
| MsG0280006346.01 | MsG0780039874.01 | 0.829404 | 5.246296e-55 | 5.364451e-52 |
| MsG0280006346.01 | MsG0780040566.01 | 0.821971 | 3.040363e-53 | 2.510939e-50 |
| MsG0280006346.01 | MsG0780040576.01 | 0.872922 | 2.190983e-67 | 9.329900e-64 |
| MsG0280006346.01 | MsG0880041861.01 | -0.806090 | 9.737299e-50 | 5.238529e-47 |
| MsG0280006346.01 | MsG0880042435.01 | 0.820925 | 5.299992e-53 | 4.250901e-50 |
| MsG0280006346.01 | MsG0880043157.01 | -0.803405 | 3.541189e-49 | 1.778026e-46 |
| MsG0280006346.01 | MsG0880043937.01 | -0.808569 | 2.904237e-50 | 1.666206e-47 |
| MsG0280006346.01 | MsG0880043941.01 | -0.810749 | 9.873603e-51 | 6.001451e-48 |
| MsG0280006346.01 | MsG0880045707.01 | 0.815095 | 1.101643e-51 | 7.523844e-49 |
| MsG0280006346.01 | MsG0880045992.01 | -0.807235 | 5.579863e-50 | 3.091603e-47 |
| MsG0280006346.01 | MsG0880047481.01 | 0.800527 | 1.382130e-48 | 6.450013e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006346.01.T01 | MTR_2g006820 | 100.000 | 192 | 0 | 0 | 1 | 192 | 262 | 453 | 8.27e-137 | 390 |
| MsG0280006346.01.T01 | MTR_5g093300 | 99.479 | 192 | 1 | 0 | 1 | 192 | 264 | 455 | 1.66e-136 | 389 |
| MsG0280006346.01.T01 | MTR_1g091037 | 35.678 | 199 | 113 | 5 | 1 | 190 | 433 | 625 | 4.73e-27 | 107 |
| MsG0280006346.01.T01 | MTR_1g091037 | 35.678 | 199 | 113 | 5 | 1 | 190 | 441 | 633 | 5.07e-27 | 107 |
| MsG0280006346.01.T01 | MTR_8g018770 | 35.385 | 195 | 119 | 3 | 1 | 190 | 351 | 543 | 1.34e-26 | 105 |
| MsG0280006346.01.T01 | MTR_4g120220 | 32.961 | 179 | 117 | 2 | 17 | 192 | 341 | 519 | 6.39e-24 | 98.2 |
| MsG0280006346.01.T01 | MTR_1g111140 | 33.158 | 190 | 120 | 4 | 6 | 190 | 283 | 470 | 4.99e-21 | 90.1 |
| MsG0280006346.01.T01 | MTR_5g092530 | 95.000 | 40 | 2 | 0 | 90 | 129 | 4 | 43 | 1.36e-20 | 81.3 |
| MsG0280006346.01.T01 | MTR_1g096240 | 32.075 | 159 | 102 | 3 | 36 | 190 | 301 | 457 | 8.06e-20 | 86.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006346.01.T01 | AT4G26910 | 85.417 | 192 | 28 | 0 | 1 | 192 | 174 | 365 | 6.66e-121 | 347 |
| MsG0280006346.01.T01 | AT4G26910 | 85.417 | 192 | 28 | 0 | 1 | 192 | 273 | 464 | 3.40e-120 | 348 |
| MsG0280006346.01.T01 | AT4G26910 | 85.417 | 192 | 28 | 0 | 1 | 192 | 272 | 463 | 4.24e-120 | 348 |
| MsG0280006346.01.T01 | AT5G55070 | 85.938 | 192 | 27 | 0 | 1 | 192 | 273 | 464 | 6.26e-120 | 347 |
| MsG0280006346.01.T01 | AT5G55070 | 85.938 | 192 | 27 | 0 | 1 | 192 | 273 | 464 | 6.26e-120 | 347 |
| MsG0280006346.01.T01 | AT3G52200 | 39.062 | 192 | 108 | 4 | 7 | 190 | 447 | 637 | 1.18e-31 | 120 |
| MsG0280006346.01.T01 | AT3G52200 | 39.062 | 192 | 108 | 4 | 7 | 190 | 523 | 713 | 1.34e-31 | 120 |
| MsG0280006346.01.T01 | AT1G54220 | 34.694 | 196 | 119 | 5 | 1 | 190 | 347 | 539 | 4.76e-26 | 104 |
| MsG0280006346.01.T01 | AT1G54220 | 34.694 | 196 | 119 | 5 | 1 | 190 | 347 | 539 | 4.76e-26 | 104 |
| MsG0280006346.01.T01 | AT3G13930 | 36.364 | 198 | 113 | 6 | 1 | 190 | 347 | 539 | 2.15e-25 | 102 |
| MsG0280006346.01.T01 | AT3G06850 | 30.168 | 179 | 122 | 2 | 17 | 192 | 304 | 482 | 8.93e-23 | 95.1 |
| MsG0280006346.01.T01 | AT3G06850 | 30.168 | 179 | 122 | 2 | 17 | 192 | 304 | 482 | 8.93e-23 | 95.1 |
| MsG0280006346.01.T01 | AT3G25860 | 33.679 | 193 | 121 | 4 | 3 | 190 | 290 | 480 | 3.91e-21 | 90.5 |
| MsG0280006346.01.T01 | AT1G34430 | 31.447 | 159 | 103 | 3 | 36 | 190 | 309 | 465 | 9.27e-19 | 83.6 |
Find 73 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAAAGCATGGAGTTAAAT+TGG | 0.165306 | 2:-709592 | MsG0280006346.01.T01:CDS |
| ATATCAAATGGTGGTGTTTA+TGG | 0.206829 | 2:-708999 | MsG0280006346.01.T01:CDS |
| ACCTGAGGTGGGTTGATAAT+AGG | 0.238106 | 2:+708960 | None:intergenic |
| AAACAAAAGGGTACTCATTA+TGG | 0.257867 | 2:+708299 | None:intergenic |
| GACTCTCCATATCTTAGGTT+TGG | 0.261336 | 2:+710173 | None:intergenic |
| GTGTAGACTCTCCATATCTT+AGG | 0.288835 | 2:+710168 | None:intergenic |
| GAATGATGAGGTGTCAATTT+TGG | 0.295614 | 2:-710123 | MsG0280006346.01.T01:five_prime_UTR |
| CCTGAGGTGGGTTGATAATA+GGG | 0.311518 | 2:+708961 | None:intergenic |
| ACCTATCCCTCTCAAATTAG+AGG | 0.319122 | 2:-708171 | MsG0280006346.01.T01:three_prime_UTR |
| GTTAAATTGGGACTTATGTC+TGG | 0.320345 | 2:-709579 | MsG0280006346.01.T01:CDS |
| CTCTTCCATCAATGATTCTA+TGG | 0.339946 | 2:+708442 | None:intergenic |
| ATGAAATTATTTATTACTTT+GGG | 0.347041 | 2:+708089 | None:intergenic |
| ACTCTCCATATCTTAGGTTT+GGG | 0.367035 | 2:+710174 | None:intergenic |
| TACACTAGGAAAAGAGGAAA+TGG | 0.368156 | 2:-710150 | MsG0280006346.01.T01:five_prime_UTR |
| AACGACTACGAAATATACTA+TGG | 0.370420 | 2:-708118 | MsG0280006346.01.T01:three_prime_UTR |
| TTATCAGCATCACGGATAAC+AGG | 0.373407 | 2:+709122 | None:intergenic |
| TATGGTATTAGAATTCTAAC+AGG | 0.387800 | 2:+708317 | None:intergenic |
| AATGAAATTATTTATTACTT+TGG | 0.387851 | 2:+708088 | None:intergenic |
| GAAGCTCCGTGCTGATTATA+AGG | 0.392323 | 2:-709625 | MsG0280006346.01.T01:CDS |
| GAAAAGCATGGAGTTAAATT+GGG | 0.406669 | 2:-709591 | MsG0280006346.01.T01:CDS |
| TTGTTTGGGCCTTGAATTTG+CGG | 0.407631 | 2:-708282 | MsG0280006346.01.T01:three_prime_UTR |
| TATGACCATAGAATCATTGA+TGG | 0.416138 | 2:-708447 | MsG0280006346.01.T01:CDS |
| TTTGAGAGGGATAGGTGAAA+GGG | 0.432569 | 2:+708178 | None:intergenic |
| TAAATCACGCCGCAAATTCA+AGG | 0.433166 | 2:+708273 | None:intergenic |
| AAATTCAAGGCCCAAACAAA+AGG | 0.444465 | 2:+708286 | None:intergenic |
| ATGGGCCCAAACCTAAGATA+TGG | 0.448480 | 2:-710179 | MsG0280006346.01.T01:five_prime_UTR |
| CCCTATTATCAACCCACCTC+AGG | 0.456935 | 2:-708961 | MsG0280006346.01.T01:intron |
| GTGAGCCGTCCAGCGGTTGT+TGG | 0.457046 | 2:-708513 | MsG0280006346.01.T01:CDS |
| GCAATGTACATCAATGGCCT+TGG | 0.470607 | 2:+708477 | None:intergenic |
| TTATCAATTGATGAGATGGC+TGG | 0.486271 | 2:-709035 | MsG0280006346.01.T01:CDS |
| CCCTCTAATTTGAGAGGGAT+AGG | 0.487883 | 2:+708170 | None:intergenic |
| ATTGTGAATGCAGTCATTGA+TGG | 0.489563 | 2:-709430 | MsG0280006346.01.T01:CDS |
| TGATAATAGGGGTACTCAAA+AGG | 0.495701 | 2:+708973 | None:intergenic |
| GGCACTCTTACAATATCAAA+TGG | 0.504928 | 2:-709011 | MsG0280006346.01.T01:CDS |
| ACACTAGGAAAAGAGGAAAT+GGG | 0.510860 | 2:-710149 | MsG0280006346.01.T01:five_prime_UTR |
| ATTGATATCAGCATTGCTGT+TGG | 0.514151 | 2:-709382 | MsG0280006346.01.T01:CDS |
| AACTTTATCAATTGATGAGA+TGG | 0.518997 | 2:-709039 | MsG0280006346.01.T01:CDS |
| GTTAGAGCAATGTACATCAA+TGG | 0.520910 | 2:+708471 | None:intergenic |
| ATTTGAGAGGGATAGGTGAA+AGG | 0.522279 | 2:+708177 | None:intergenic |
| TTAAATTGGGACTTATGTCT+GGG | 0.522851 | 2:-709578 | MsG0280006346.01.T01:CDS |
| CATTGCTGTTGGAACTCCGA+AGG | 0.524550 | 2:-709371 | MsG0280006346.01.T01:intron |
| TCAATGACTGCATTCACAAT+CGG | 0.532345 | 2:+709433 | None:intergenic |
| AGCCGTCCAGCGGTTGTTGG+AGG | 0.533419 | 2:-708510 | MsG0280006346.01.T01:CDS |
| TGCTGATAAAATGAACTTTG+CGG | 0.538530 | 2:-709108 | MsG0280006346.01.T01:CDS |
| CTTTGACCCTCTAATTTGAG+AGG | 0.547359 | 2:+708164 | None:intergenic |
| TTGGAGGAAATGTTGTTCCA+AGG | 0.547451 | 2:-708494 | MsG0280006346.01.T01:CDS |
| AGAGTCTACACTAGGAAAAG+AGG | 0.548701 | 2:-710156 | MsG0280006346.01.T01:five_prime_UTR |
| TTGTGAATGCAGTCATTGAT+GGG | 0.559272 | 2:-709429 | MsG0280006346.01.T01:CDS |
| AATTCAAGGCCCAAACAAAA+GGG | 0.563782 | 2:+708287 | None:intergenic |
| TTTGACCCTCTAATTTGAGA+GGG | 0.571568 | 2:+708165 | None:intergenic |
| ACATTTCCTCCAACAACCGC+TGG | 0.572771 | 2:+708504 | None:intergenic |
| ATACCGTGGAGGACCCTCGC+AGG | 0.593381 | 2:-708389 | MsG0280006346.01.T01:CDS |
| CCTATCCCTCTCAAATTAGA+GGG | 0.595613 | 2:-708170 | MsG0280006346.01.T01:three_prime_UTR |
| GATGCTTTCGTTGAAAAGCA+TGG | 0.597642 | 2:-709603 | MsG0280006346.01.T01:CDS |
| TTCGATTGTGAGCCGTCCAG+CGG | 0.600855 | 2:-708520 | MsG0280006346.01.T01:CDS |
| CAGAACATACAAACCTGAGG+TGG | 0.613865 | 2:+708948 | None:intergenic |
| TAGAATCATTGATGGAAGAG+AGG | 0.619261 | 2:-708439 | MsG0280006346.01.T01:CDS |
| CTGAGGTGGGTTGATAATAG+GGG | 0.623105 | 2:+708962 | None:intergenic |
| TCAATTGATGAGATGGCTGG+AGG | 0.628406 | 2:-709032 | MsG0280006346.01.T01:CDS |
| AGATATGGAGAGTCTACACT+AGG | 0.628986 | 2:-710164 | MsG0280006346.01.T01:five_prime_UTR |
| TTTGCAAAGAAGGCTAACGC+TGG | 0.639441 | 2:-709062 | MsG0280006346.01.T01:CDS |
| TTCCTCCAACAACCGCTGGA+CGG | 0.639653 | 2:+708508 | None:intergenic |
| ATGTCAAGCAGAAGCCTGCG+AGG | 0.650619 | 2:+708375 | None:intergenic |
| TAGGAAAAGAGGAAATGGGA+AGG | 0.654661 | 2:-710145 | MsG0280006346.01.T01:five_prime_UTR |
| TGTCAAGCAGAAGCCTGCGA+GGG | 0.655081 | 2:+708376 | None:intergenic |
| AAGCCTGCGAGGGTCCTCCA+CGG | 0.657162 | 2:+708386 | None:intergenic |
| ACTCTTACAATATCAAATGG+TGG | 0.666602 | 2:-709008 | MsG0280006346.01.T01:CDS |
| AGAACATACAAACCTGAGGT+GGG | 0.667345 | 2:+708949 | None:intergenic |
| GGAAATGGGAAGGAATGATG+AGG | 0.670918 | 2:-710135 | MsG0280006346.01.T01:five_prime_UTR |
| AAGCATCCTTATAATCAGCA+CGG | 0.676021 | 2:+709619 | None:intergenic |
| GAGACGTATCAAAGATACCG+TGG | 0.685563 | 2:-708403 | MsG0280006346.01.T01:CDS |
| TGTGAATGCAGTCATTGATG+GGG | 0.732167 | 2:-709428 | MsG0280006346.01.T01:CDS |
| ACGTATCAAAGATACCGTGG+AGG | 0.769146 | 2:-708400 | MsG0280006346.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGAAATTATTTATTACTT+TGG | + | Chr2:710170-710189 | None:intergenic | 10.0% |
| !! | ATGAAATTATTTATTACTTT+GGG | + | Chr2:710169-710188 | None:intergenic | 10.0% |
| !! | TAAAACAGTAACAATATTAA+TGG | + | Chr2:708383-708402 | None:intergenic | 15.0% |
| !! | TAACAATATTAATGGAAAAA+TGG | + | Chr2:708375-708394 | None:intergenic | 15.0% |
| !! | TTATGGTAAGATTTAATTAT+TGG | - | Chr2:709379-709398 | MsG0280006346.01.T01:CDS | 15.0% |
| !!! | ACTAGTTTGAAATTTTTTAA+TGG | - | Chr2:709043-709062 | MsG0280006346.01.T01:CDS | 15.0% |
| !!! | TCTACACAATTTTTTTTTAA+AGG | - | Chr2:709664-709683 | MsG0280006346.01.T01:intron | 15.0% |
| !! | AAAACATAGTAAATAAGTGA+AGG | + | Chr2:708929-708948 | None:intergenic | 20.0% |
| !!! | ATAGAACATTCTTTGATTTA+TGG | - | Chr2:709362-709381 | MsG0280006346.01.T01:intron | 20.0% |
| !!! | ATTGATTTTGTTTTTTTGTC+GGG | - | Chr2:708433-708452 | MsG0280006346.01.T01:CDS | 20.0% |
| !!! | CATTGATTTTGTTTTTTTGT+CGG | - | Chr2:708432-708451 | MsG0280006346.01.T01:CDS | 20.0% |
| !!! | GTTTGAAATTTTTTAATGGT+TGG | - | Chr2:709047-709066 | MsG0280006346.01.T01:CDS | 20.0% |
| !!! | TTTTTTCTATGTACTTACTT+TGG | - | Chr2:708760-708779 | MsG0280006346.01.T01:intron | 20.0% |
| ! | AAAGCTTGTAATTGTATCAA+TGG | + | Chr2:708350-708369 | None:intergenic | 25.0% |
| ! | AAATGATGCCAAATAATTGT+TGG | - | Chr2:709636-709655 | MsG0280006346.01.T01:exon | 25.0% |
| ! | AACTTTATCAATTGATGAGA+TGG | - | Chr2:709216-709235 | MsG0280006346.01.T01:intron | 25.0% |
| ! | AATGATGCCAAATAATTGTT+GGG | - | Chr2:709637-709656 | MsG0280006346.01.T01:exon | 25.0% |
| ! | AATTATCCAAATCTTACTAC+TGG | + | Chr2:709594-709613 | None:intergenic | 25.0% |
| ! | AGAATTTCCCAACAATTATT+TGG | + | Chr2:709647-709666 | None:intergenic | 25.0% |
| ! | ATCATGTTAATCTACATAAC+TGG | + | Chr2:708477-708496 | None:intergenic | 25.0% |
| ! | ATTGCTCTGCAATTTATAAT+AGG | - | Chr2:708596-708615 | MsG0280006346.01.T01:intron | 25.0% |
| ! | CGACAAAAAAACAAAATCAA+TGG | + | Chr2:708434-708453 | None:intergenic | 25.0% |
| ! | GAACAATTACAAGAGAAATA+AGG | + | Chr2:708323-708342 | None:intergenic | 25.0% |
| ! | GATAATTGCAATTCAATACA+AGG | + | Chr2:708564-708583 | None:intergenic | 25.0% |
| ! | TAAGTATTCTGTTATTCTGT+GGG | - | Chr2:708217-708236 | MsG0280006346.01.T01:three_prime_UTR | 25.0% |
| ! | TAGATTAACATGATAGACAA+GGG | - | Chr2:708483-708502 | MsG0280006346.01.T01:CDS | 25.0% |
| ! | TATGGTATTAGAATTCTAAC+AGG | + | Chr2:709941-709960 | None:intergenic | 25.0% |
| ! | TATTATCTAGAGAAAATCCT+TGG | - | Chr2:708949-708968 | MsG0280006346.01.T01:intron | 25.0% |
| ! | TCATGTTAATCTACATAACT+GGG | + | Chr2:708476-708495 | None:intergenic | 25.0% |
| !!! | CAACTATTATTTTTTGCAGT+CGG | - | Chr2:709696-709715 | MsG0280006346.01.T01:intron | 25.0% |
| !!! | TCATTTTGATAAGTTACTAG+TGG | + | Chr2:709504-709523 | None:intergenic | 25.0% |
| !!! | TTGATTTTGTTTTTTTGTCG+GGG | - | Chr2:708434-708453 | MsG0280006346.01.T01:CDS | 25.0% |
| AAAACAAAATCAATGGCTGA+TGG | + | Chr2:708427-708446 | None:intergenic | 30.0% | |
| AACGACTACGAAATATACTA+TGG | - | Chr2:710137-710156 | MsG0280006346.01.T01:five_prime_UTR | 30.0% | |
| AACTATAAGGGCAGAATATT+TGG | + | Chr2:709570-709589 | None:intergenic | 30.0% | |
| AAGTATTCTGTTATTCTGTG+GGG | - | Chr2:708218-708237 | MsG0280006346.01.T01:three_prime_UTR | 30.0% | |
| ACTCTTACAATATCAAATGG+TGG | - | Chr2:709247-709266 | MsG0280006346.01.T01:intron | 30.0% | |
| AGATTAACATGATAGACAAG+GGG | - | Chr2:708484-708503 | MsG0280006346.01.T01:CDS | 30.0% | |
| CTAAGTATTCTGTTATTCTG+TGG | - | Chr2:708216-708235 | MsG0280006346.01.T01:three_prime_UTR | 30.0% | |
| GTAGATTAACATGATAGACA+AGG | - | Chr2:708482-708501 | MsG0280006346.01.T01:CDS | 30.0% | |
| TAATAGTGAGTCAGAGAATA+AGG | - | Chr2:708190-708209 | MsG0280006346.01.T01:three_prime_UTR | 30.0% | |
| TATAAATTGCAGAGCAATCA+GGG | + | Chr2:708594-708613 | None:intergenic | 30.0% | |
| TATGACCATAGAATCATTGA+TGG | - | Chr2:709808-709827 | MsG0280006346.01.T01:intron | 30.0% | |
| TGCTGATAAAATGAACTTTG+CGG | - | Chr2:709147-709166 | MsG0280006346.01.T01:intron | 30.0% | |
| TGTCATCGAACATATTTCAT+GGG | + | Chr2:709424-709443 | None:intergenic | 30.0% | |
| TTAAATTGGGACTTATGTCT+GGG | - | Chr2:708677-708696 | MsG0280006346.01.T01:intron | 30.0% | |
| TTATAAATTGCAGAGCAATC+AGG | + | Chr2:708595-708614 | None:intergenic | 30.0% | |
| ! | AATTAGAGGGTCAAAGTTTT+TGG | - | Chr2:710098-710117 | MsG0280006346.01.T01:intron | 30.0% |
| ! | AGTTCATTTTATCAGCATCA+CGG | + | Chr2:709144-709163 | None:intergenic | 30.0% |
| ! | ATAATGAGTACCCTTTTGTT+TGG | - | Chr2:709958-709977 | MsG0280006346.01.T01:intron | 30.0% |
| ! | ATATCAAATGGTGGTGTTTA+TGG | - | Chr2:709256-709275 | MsG0280006346.01.T01:intron | 30.0% |
| ! | GAAAAGCATGGAGTTAAATT+GGG | - | Chr2:708664-708683 | MsG0280006346.01.T01:intron | 30.0% |
| ! | GGTCACTTTGTTAGTTATTT+GGG | - | Chr2:708239-708258 | MsG0280006346.01.T01:three_prime_UTR | 30.0% |
| ! | TGAAAAGCATGGAGTTAAAT+TGG | - | Chr2:708663-708682 | MsG0280006346.01.T01:intron | 30.0% |
| ! | TTTTATTGAGCAAGCTCTTT+AGG | - | Chr2:710009-710028 | MsG0280006346.01.T01:intron | 30.0% |
| !! | AAACAAAAGGGTACTCATTA+TGG | + | Chr2:709959-709978 | None:intergenic | 30.0% |
| !! | GATCAATGTTTTTGCAAAGA+AGG | - | Chr2:709183-709202 | MsG0280006346.01.T01:intron | 30.0% |
| !! | TAATGAGTACCCTTTTGTTT+GGG | - | Chr2:709959-709978 | MsG0280006346.01.T01:intron | 30.0% |
| AAATTCAAGGCCCAAACAAA+AGG | + | Chr2:709972-709991 | None:intergenic | 35.0% | |
| AAGCATCCTTATAATCAGCA+CGG | + | Chr2:708639-708658 | None:intergenic | 35.0% | |
| AAGTGACTGATGAAAACCTT+CGG | + | Chr2:708903-708922 | None:intergenic | 35.0% | |
| AATTCAAGGCCCAAACAAAA+GGG | + | Chr2:709971-709990 | None:intergenic | 35.0% | |
| ACACTAGGAAAAGAGGAAAT+GGG | - | Chr2:708106-708125 | MsG0280006346.01.T01:three_prime_UTR | 35.0% | |
| ACTCTCCATATCTTAGGTTT+GGG | + | Chr2:708084-708103 | None:intergenic | 35.0% | |
| ATACGACACAATGCATGAAA+TGG | + | Chr2:709463-709482 | None:intergenic | 35.0% | |
| ATTGATATCAGCATTGCTGT+TGG | - | Chr2:708873-708892 | MsG0280006346.01.T01:intron | 35.0% | |
| ATTGTGAATGCAGTCATTGA+TGG | - | Chr2:708825-708844 | MsG0280006346.01.T01:intron | 35.0% | |
| CAAAGTATGCTCTCAAACTA+TGG | - | Chr2:708705-708724 | MsG0280006346.01.T01:intron | 35.0% | |
| CATGAAATATGTTCGATGAC+AGG | - | Chr2:709423-709442 | MsG0280006346.01.T01:CDS | 35.0% | |
| CTCTTCCATCAATGATTCTA+TGG | + | Chr2:709816-709835 | None:intergenic | 35.0% | |
| CTGTCATCGAACATATTTCA+TGG | + | Chr2:709425-709444 | None:intergenic | 35.0% | |
| CTTACTACTGGCAACTATAA+GGG | + | Chr2:709582-709601 | None:intergenic | 35.0% | |
| GGCACTCTTACAATATCAAA+TGG | - | Chr2:709244-709263 | MsG0280006346.01.T01:intron | 35.0% | |
| GTATAATAAACCCAACACCA+AGG | + | Chr2:708969-708988 | None:intergenic | 35.0% | |
| GTCATCGAACATATTTCATG+GGG | + | Chr2:709423-709442 | None:intergenic | 35.0% | |
| GTTAAATTGGGACTTATGTC+TGG | - | Chr2:708676-708695 | MsG0280006346.01.T01:intron | 35.0% | |
| GTTAGAGCAATGTACATCAA+TGG | + | Chr2:709787-709806 | None:intergenic | 35.0% | |
| GTTTGTATGTTCTGCTAAGA+AGG | - | Chr2:709316-709335 | MsG0280006346.01.T01:intron | 35.0% | |
| TAAGGGCAGAATATTTGGTT+AGG | + | Chr2:709565-709584 | None:intergenic | 35.0% | |
| TACACTAGGAAAAGAGGAAA+TGG | - | Chr2:708105-708124 | MsG0280006346.01.T01:three_prime_UTR | 35.0% | |
| TACGACACAATGCATGAAAT+GGG | + | Chr2:709462-709481 | None:intergenic | 35.0% | |
| TAGAATCATTGATGGAAGAG+AGG | - | Chr2:709816-709835 | MsG0280006346.01.T01:intron | 35.0% | |
| TAGTTGCCAGTAGTAAGATT+TGG | - | Chr2:709585-709604 | MsG0280006346.01.T01:CDS | 35.0% | |
| TCAATGACTGCATTCACAAT+CGG | + | Chr2:708825-708844 | None:intergenic | 35.0% | |
| TCTTACTACTGGCAACTATA+AGG | + | Chr2:709583-709602 | None:intergenic | 35.0% | |
| TGTACTTACTTTGGTCTCTT+TGG | - | Chr2:708769-708788 | MsG0280006346.01.T01:intron | 35.0% | |
| TTATCAATTGATGAGATGGC+TGG | - | Chr2:709220-709239 | MsG0280006346.01.T01:intron | 35.0% | |
| TTGTGAATGCAGTCATTGAT+GGG | - | Chr2:708826-708845 | MsG0280006346.01.T01:intron | 35.0% | |
| TTTGACCCTCTAATTTGAGA+GGG | + | Chr2:710093-710112 | None:intergenic | 35.0% | |
| ! | GGGTCACTTTGTTAGTTATT+TGG | - | Chr2:708238-708257 | MsG0280006346.01.T01:three_prime_UTR | 35.0% |
| !! | GAATGATGAGGTGTCAATTT+TGG | - | Chr2:708132-708151 | MsG0280006346.01.T01:three_prime_UTR | 35.0% |
| !! | TAGAGAAAATCCTTGGTGTT+GGG | - | Chr2:708956-708975 | MsG0280006346.01.T01:intron | 35.0% |
| !! | TGATAATAGGGGTACTCAAA+AGG | + | Chr2:709285-709304 | None:intergenic | 35.0% |
| !! | TGCTAAGAAGGCACTTATTA+TGG | - | Chr2:709328-709347 | MsG0280006346.01.T01:intron | 35.0% |
| !! | TGGTGCTATACTTGTTGTAA+TGG | - | Chr2:708538-708557 | MsG0280006346.01.T01:CDS | 35.0% |
| !!! | TTTTTTTGCTTGCCTTACCA+GGG | - | Chr2:709100-709119 | MsG0280006346.01.T01:CDS | 35.0% |
| ACCTATCCCTCTCAAATTAG+AGG | - | Chr2:710084-710103 | MsG0280006346.01.T01:intron | 40.0% | |
| AGAACATACAAACCTGAGGT+GGG | + | Chr2:709309-709328 | None:intergenic | 40.0% | |
| AGAGTCTACACTAGGAAAAG+AGG | - | Chr2:708099-708118 | MsG0280006346.01.T01:three_prime_UTR | 40.0% | |
| AGATATGGAGAGTCTACACT+AGG | - | Chr2:708091-708110 | MsG0280006346.01.T01:three_prime_UTR | 40.0% | |
| ATTTGAGAGGGATAGGTGAA+AGG | + | Chr2:710081-710100 | None:intergenic | 40.0% | |
| CCTATCCCTCTCAAATTAGA+GGG | - | Chr2:710085-710104 | MsG0280006346.01.T01:intron | 40.0% | |
| CGACGTAGATCAATGACATA+TGG | + | Chr2:709008-709027 | None:intergenic | 40.0% | |
| CTTACTTTGGTCTCTTTGGT+AGG | - | Chr2:708773-708792 | MsG0280006346.01.T01:intron | 40.0% | |
| CTTTGACCCTCTAATTTGAG+AGG | + | Chr2:710094-710113 | None:intergenic | 40.0% | |
| GACTCTCCATATCTTAGGTT+TGG | + | Chr2:708085-708104 | None:intergenic | 40.0% | |
| GATGCTTTCGTTGAAAAGCA+TGG | - | Chr2:708652-708671 | MsG0280006346.01.T01:intron | 40.0% | |
| GTGTAGACTCTCCATATCTT+AGG | + | Chr2:708090-708109 | None:intergenic | 40.0% | |
| TAAATCACGCCGCAAATTCA+AGG | + | Chr2:709985-710004 | None:intergenic | 40.0% | |
| TAGCAGAACATACAAACCTG+AGG | + | Chr2:709313-709332 | None:intergenic | 40.0% | |
| TAGGAAAAGAGGAAATGGGA+AGG | - | Chr2:708110-708129 | MsG0280006346.01.T01:three_prime_UTR | 40.0% | |
| TATGTTCGATGACAGGAAGT+AGG | - | Chr2:709430-709449 | MsG0280006346.01.T01:CDS | 40.0% | |
| TGTGAATGCAGTCATTGATG+GGG | - | Chr2:708827-708846 | MsG0280006346.01.T01:intron | 40.0% | |
| TTATCAGCATCACGGATAAC+AGG | + | Chr2:709136-709155 | None:intergenic | 40.0% | |
| TTGGAGGAAATGTTGTTCCA+AGG | - | Chr2:709761-709780 | MsG0280006346.01.T01:intron | 40.0% | |
| TTGTTTGGGCCTTGAATTTG+CGG | - | Chr2:709973-709992 | MsG0280006346.01.T01:intron | 40.0% | |
| TTTGAGAGGGATAGGTGAAA+GGG | + | Chr2:710080-710099 | None:intergenic | 40.0% | |
| ! | CTAGAGAAAATCCTTGGTGT+TGG | - | Chr2:708955-708974 | MsG0280006346.01.T01:intron | 40.0% |
| ! | TTTTTGCAGTCGGCAATCTT+GGG | - | Chr2:709706-709725 | MsG0280006346.01.T01:intron | 40.0% |
| !! | AGGTGTCAATTTTGGTGCAT+GGG | - | Chr2:708140-708159 | MsG0280006346.01.T01:three_prime_UTR | 40.0% |
| !!! | CTTTTTTTGCTTGCCTTACC+AGG | - | Chr2:709099-709118 | MsG0280006346.01.T01:CDS | 40.0% |
| !!! | TTGTTTTTTTGTCGGGGTGA+GGG | - | Chr2:708440-708459 | MsG0280006346.01.T01:CDS | 40.0% |
| !!! | TTTGTTTTTTTGTCGGGGTG+AGG | - | Chr2:708439-708458 | MsG0280006346.01.T01:CDS | 40.0% |
| !!! | TTTTTTGCAGTCGGCAATCT+TGG | - | Chr2:709705-709724 | MsG0280006346.01.T01:intron | 40.0% |
| ACGTATCAAAGATACCGTGG+AGG | - | Chr2:709855-709874 | MsG0280006346.01.T01:intron | 45.0% | |
| AGTTACTAGTGGCATGCATC+TGG | + | Chr2:709493-709512 | None:intergenic | 45.0% | |
| ATGGGCCCAAACCTAAGATA+TGG | - | Chr2:708076-708095 | MsG0280006346.01.T01:three_prime_UTR | 45.0% | |
| CAGAACATACAAACCTGAGG+TGG | + | Chr2:709310-709329 | None:intergenic | 45.0% | |
| CCCTCTAATTTGAGAGGGAT+AGG | + | Chr2:710088-710107 | None:intergenic | 45.0% | |
| GAGACGTATCAAAGATACCG+TGG | - | Chr2:709852-709871 | MsG0280006346.01.T01:intron | 45.0% | |
| GCAATGTACATCAATGGCCT+TGG | + | Chr2:709781-709800 | None:intergenic | 45.0% | |
| GGAAATGGGAAGGAATGATG+AGG | - | Chr2:708120-708139 | MsG0280006346.01.T01:three_prime_UTR | 45.0% | |
| TCAATTGATGAGATGGCTGG+AGG | - | Chr2:709223-709242 | MsG0280006346.01.T01:intron | 45.0% | |
| TTTGCAAAGAAGGCTAACGC+TGG | - | Chr2:709193-709212 | MsG0280006346.01.T01:intron | 45.0% | |
| !! | ACCTGAGGTGGGTTGATAAT+AGG | + | Chr2:709298-709317 | None:intergenic | 45.0% |
| !! | CCTGAGGTGGGTTGATAATA+GGG | + | Chr2:709297-709316 | None:intergenic | 45.0% |
| !! | CTGAGGTGGGTTGATAATAG+GGG | + | Chr2:709296-709315 | None:intergenic | 45.0% |
| !! | GAAGCTCCGTGCTGATTATA+AGG | - | Chr2:708630-708649 | MsG0280006346.01.T01:intron | 45.0% |
| !! | GAGGTGTCAATTTTGGTGCA+TGG | - | Chr2:708139-708158 | MsG0280006346.01.T01:three_prime_UTR | 45.0% |
| !! | AATAAATAATAATAAACAAA+TGG | + | Chr2:708515-708534 | None:intergenic | 5.0% |
| !! | GTTTATTATTATTTATTTAT+TGG | - | Chr2:708518-708537 | MsG0280006346.01.T01:CDS | 5.0% |
| ACATTTCCTCCAACAACCGC+TGG | + | Chr2:709754-709773 | None:intergenic | 50.0% | |
| CCCTATTATCAACCCACCTC+AGG | - | Chr2:709294-709313 | MsG0280006346.01.T01:intron | 50.0% | |
| TAACAGGCACAACAAGTCCC+TGG | + | Chr2:709120-709139 | None:intergenic | 50.0% | |
| ! | CATTGCTGTTGGAACTCCGA+AGG | - | Chr2:708884-708903 | MsG0280006346.01.T01:intron | 50.0% |
| ATGTCAAGCAGAAGCCTGCG+AGG | + | Chr2:709883-709902 | None:intergenic | 55.0% | |
| GGCACAACAAGTCCCTGGTA+AGG | + | Chr2:709115-709134 | None:intergenic | 55.0% | |
| TGTCAAGCAGAAGCCTGCGA+GGG | + | Chr2:709882-709901 | None:intergenic | 55.0% | |
| TTCCTCCAACAACCGCTGGA+CGG | + | Chr2:709750-709769 | None:intergenic | 55.0% | |
| TTCGATTGTGAGCCGTCCAG+CGG | - | Chr2:709735-709754 | MsG0280006346.01.T01:intron | 55.0% | |
| AAGCCTGCGAGGGTCCTCCA+CGG | + | Chr2:709872-709891 | None:intergenic | 65.0% | |
| AGCCGTCCAGCGGTTGTTGG+AGG | - | Chr2:709745-709764 | MsG0280006346.01.T01:intron | 65.0% | |
| ATACCGTGGAGGACCCTCGC+AGG | - | Chr2:709866-709885 | MsG0280006346.01.T01:intron | 65.0% | |
| GTGAGCCGTCCAGCGGTTGT+TGG | - | Chr2:709742-709761 | MsG0280006346.01.T01:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 708076 | 710201 | 708076 | ID=MsG0280006346.01;Name=MsG0280006346.01 |
| Chr2 | mRNA | 708076 | 710201 | 708076 | ID=MsG0280006346.01.T01;Parent=MsG0280006346.01;Name=MsG0280006346.01.T01;_AED=0.46;_eAED=0.51;_QI=111|0.75|0.8|1|1|0.8|5|295|192 |
| Chr2 | exon | 708076 | 708562 | 708076 | ID=MsG0280006346.01.T01:exon:822;Parent=MsG0280006346.01.T01 |
| Chr2 | exon | 708962 | 709156 | 708962 | ID=MsG0280006346.01.T01:exon:821;Parent=MsG0280006346.01.T01 |
| Chr2 | exon | 709372 | 709482 | 709372 | ID=MsG0280006346.01.T01:exon:820;Parent=MsG0280006346.01.T01 |
| Chr2 | exon | 709569 | 709659 | 709569 | ID=MsG0280006346.01.T01:exon:819;Parent=MsG0280006346.01.T01 |
| Chr2 | exon | 710101 | 710201 | 710101 | ID=MsG0280006346.01.T01:exon:818;Parent=MsG0280006346.01.T01 |
| Chr2 | five_prime_UTR | 710101 | 710201 | 710101 | ID=MsG0280006346.01.T01:five_prime_utr;Parent=MsG0280006346.01.T01 |
| Chr2 | five_prime_UTR | 709650 | 709659 | 709650 | ID=MsG0280006346.01.T01:five_prime_utr;Parent=MsG0280006346.01.T01 |
| Chr2 | CDS | 709569 | 709649 | 709569 | ID=MsG0280006346.01.T01:cds;Parent=MsG0280006346.01.T01 |
| Chr2 | CDS | 709372 | 709482 | 709372 | ID=MsG0280006346.01.T01:cds;Parent=MsG0280006346.01.T01 |
| Chr2 | CDS | 708962 | 709156 | 708962 | ID=MsG0280006346.01.T01:cds;Parent=MsG0280006346.01.T01 |
| Chr2 | CDS | 708371 | 708562 | 708371 | ID=MsG0280006346.01.T01:cds;Parent=MsG0280006346.01.T01 |
| Chr2 | three_prime_UTR | 708076 | 708370 | 708076 | ID=MsG0280006346.01.T01:three_prime_utr;Parent=MsG0280006346.01.T01 |
| Gene Sequence |
| Protein sequence |
