Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880047091.01.T01 | PNX95324.1 | 82.857 | 210 | 36 | 0 | 1 | 210 | 1 | 210 | 1.39E-117 | 348 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880047091.01.T01 | P46257 | 76.777 | 211 | 48 | 1 | 1 | 210 | 1 | 211 | 8.37E-108 | 317 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880047091.01.T01 | A0A2K3MX64 | 82.857 | 210 | 36 | 0 | 1 | 210 | 1 | 210 | 6.65e-118 | 348 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048506.01 | MsG0880047091.01 | 0.828912 | 6.906753e-55 | 6.959706e-52 |
| MsG0080048507.01 | MsG0880047091.01 | 0.833578 | 4.921141e-56 | 5.690921e-53 |
| MsG0180000549.01 | MsG0880047091.01 | -0.840899 | 6.584155e-58 | 9.513818e-55 |
| MsG0180000599.01 | MsG0880047091.01 | -0.808048 | 3.750050e-50 | 2.122251e-47 |
| MsG0180000942.01 | MsG0880047091.01 | -0.818203 | 2.215130e-52 | 1.647405e-49 |
| MsG0180002022.01 | MsG0880047091.01 | 0.800321 | 1.522728e-48 | 7.069310e-46 |
| MsG0180002700.01 | MsG0880047091.01 | -0.805245 | 1.465071e-49 | 7.712479e-47 |
| MsG0880046434.01 | MsG0880047091.01 | 0.846522 | 2.060037e-59 | 3.555610e-56 |
| MsG0180005339.01 | MsG0880047091.01 | -0.807129 | 5.877087e-50 | 3.247122e-47 |
| MsG0780040881.01 | MsG0880047091.01 | 0.822399 | 2.418812e-53 | 2.022448e-50 |
| MsG0780041129.01 | MsG0880047091.01 | -0.838622 | 2.577795e-57 | 3.472272e-54 |
| MsG0780041385.01 | MsG0880047091.01 | -0.808110 | 3.637318e-50 | 2.061839e-47 |
| MsG0880043107.01 | MsG0880047091.01 | -0.841209 | 5.459966e-58 | 7.964748e-55 |
| MsG0280011110.01 | MsG0880047091.01 | 0.832156 | 1.110156e-55 | 1.230444e-52 |
| MsG0380012567.01 | MsG0880047091.01 | -0.805780 | 1.131319e-49 | 6.038396e-47 |
| MsG0680031996.01 | MsG0880047091.01 | -0.803907 | 2.786510e-49 | 1.417334e-46 |
| MsG0680034759.01 | MsG0880047091.01 | 0.834696 | 2.581152e-56 | 3.086350e-53 |
| MsG0480018670.01 | MsG0880047091.01 | -0.802035 | 6.791726e-49 | 3.292888e-46 |
| MsG0480018951.01 | MsG0880047091.01 | -0.832225 | 1.067084e-55 | 1.185154e-52 |
| MsG0480019083.01 | MsG0880047091.01 | -0.801744 | 7.791141e-49 | 3.749560e-46 |
| MsG0480020527.01 | MsG0880047091.01 | 0.823649 | 1.236568e-53 | 1.071176e-50 |
| MsG0480021091.01 | MsG0880047091.01 | 0.811590 | 6.488021e-51 | 4.032116e-48 |
| MsG0480021101.01 | MsG0880047091.01 | -0.804443 | 2.155384e-49 | 1.111422e-46 |
| MsG0480022918.01 | MsG0880047091.01 | -0.814545 | 1.459245e-51 | 9.819704e-49 |
| MsG0580025827.01 | MsG0880047091.01 | -0.806194 | 9.260778e-50 | 4.995478e-47 |
| MsG0380016527.01 | MsG0880047091.01 | -0.801370 | 9.298350e-49 | 4.433002e-46 |
| MsG0480018226.01 | MsG0880047091.01 | -0.832603 | 8.602918e-56 | 9.662821e-53 |
| MsG0580028117.01 | MsG0880047091.01 | 0.869800 | 2.360085e-66 | 8.970880e-63 |
| MsG0580028118.01 | MsG0880047091.01 | 0.957243 | 4.343890e-115 | 1.482478e-109 |
| MsG0580028890.01 | MsG0880047091.01 | 0.804526 | 2.070568e-49 | 1.069978e-46 |
| MsG0580029433.01 | MsG0880047091.01 | -0.805410 | 1.352735e-49 | 7.151663e-47 |
| MsG0280008288.01 | MsG0880047091.01 | 0.802491 | 5.471531e-49 | 2.683756e-46 |
| MsG0280009435.01 | MsG0880047091.01 | -0.809015 | 2.331773e-50 | 1.353628e-47 |
| MsG0280009436.01 | MsG0880047091.01 | -0.816767 | 4.667064e-52 | 3.336915e-49 |
| MsG0780037052.01 | MsG0880047091.01 | 0.806501 | 7.978690e-50 | 4.337511e-47 |
| MsG0780037351.01 | MsG0880047091.01 | -0.801021 | 1.095712e-48 | 5.178373e-46 |
| MsG0780038318.01 | MsG0880047091.01 | 0.800776 | 1.229993e-48 | 5.776288e-46 |
| MsG0780039161.01 | MsG0880047091.01 | -0.804285 | 2.324933e-49 | 1.194031e-46 |
| MsG0780039964.01 | MsG0880047091.01 | -0.806855 | 6.716481e-50 | 3.684886e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880047091.01.T01 | MTR_5g069055 | 82.381 | 210 | 37 | 0 | 1 | 210 | 1 | 210 | 6.68e-121 | 347 |
| MsG0880047091.01.T01 | MTR_5g069050 | 78.673 | 211 | 45 | 0 | 1 | 211 | 42 | 252 | 9.08e-114 | 330 |
| MsG0880047091.01.T01 | MTR_1g061050 | 74.762 | 210 | 53 | 0 | 1 | 210 | 1 | 210 | 2.40e-105 | 308 |
| MsG0880047091.01.T01 | MTR_5g096670 | 69.048 | 210 | 65 | 0 | 1 | 210 | 1 | 210 | 3.60e-98 | 289 |
| MsG0880047091.01.T01 | MTR_4g071860 | 48.020 | 202 | 104 | 1 | 8 | 209 | 53 | 253 | 5.46e-56 | 182 |
| MsG0880047091.01.T01 | MTR_4g057670 | 47.525 | 202 | 105 | 1 | 8 | 209 | 53 | 253 | 8.85e-56 | 182 |
| MsG0880047091.01.T01 | MTR_1g109200 | 45.455 | 209 | 107 | 3 | 4 | 209 | 40 | 244 | 2.56e-54 | 178 |
| MsG0880047091.01.T01 | MTR_4g071880 | 47.030 | 202 | 94 | 3 | 8 | 209 | 51 | 239 | 2.12e-51 | 170 |
| MsG0880047091.01.T01 | MTR_7g103920 | 64.646 | 99 | 10 | 1 | 109 | 207 | 8 | 81 | 2.51e-35 | 120 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880047091.01.T01 | AT2G36460 | 75.714 | 210 | 51 | 0 | 1 | 210 | 1 | 210 | 5.00e-107 | 312 |
| MsG0880047091.01.T01 | AT3G52930 | 77.725 | 211 | 45 | 2 | 1 | 210 | 1 | 210 | 2.02e-106 | 310 |
| MsG0880047091.01.T01 | AT5G03690 | 72.897 | 214 | 50 | 2 | 1 | 210 | 1 | 210 | 4.09e-97 | 286 |
| MsG0880047091.01.T01 | AT4G26530 | 67.619 | 210 | 68 | 0 | 1 | 210 | 1 | 210 | 1.71e-93 | 277 |
| MsG0880047091.01.T01 | AT4G26530 | 67.619 | 210 | 68 | 0 | 1 | 210 | 1 | 210 | 1.71e-93 | 277 |
| MsG0880047091.01.T01 | AT4G26530 | 67.619 | 210 | 68 | 0 | 1 | 210 | 1 | 210 | 1.71e-93 | 277 |
| MsG0880047091.01.T01 | AT5G03690 | 73.039 | 204 | 47 | 2 | 11 | 210 | 45 | 244 | 3.86e-91 | 273 |
| MsG0880047091.01.T01 | AT4G26520 | 63.810 | 210 | 76 | 0 | 1 | 210 | 1 | 210 | 5.80e-85 | 256 |
| MsG0880047091.01.T01 | AT4G26520 | 63.810 | 210 | 76 | 0 | 1 | 210 | 1 | 210 | 7.37e-85 | 255 |
| MsG0880047091.01.T01 | AT4G26520 | 63.682 | 201 | 73 | 0 | 10 | 210 | 7 | 207 | 3.28e-80 | 243 |
| MsG0880047091.01.T01 | AT4G26520 | 63.682 | 201 | 73 | 0 | 10 | 210 | 7 | 207 | 3.28e-80 | 243 |
| MsG0880047091.01.T01 | AT2G36460 | 91.753 | 97 | 8 | 0 | 114 | 210 | 23 | 119 | 2.37e-60 | 190 |
| MsG0880047091.01.T01 | AT2G36460 | 91.753 | 97 | 8 | 0 | 114 | 210 | 23 | 119 | 2.37e-60 | 190 |
| MsG0880047091.01.T01 | AT4G38970 | 49.020 | 204 | 103 | 1 | 6 | 209 | 49 | 251 | 1.08e-58 | 189 |
| MsG0880047091.01.T01 | AT4G38970 | 49.020 | 204 | 103 | 1 | 6 | 209 | 49 | 251 | 1.82e-58 | 189 |
| MsG0880047091.01.T01 | AT2G21330 | 48.039 | 204 | 105 | 1 | 6 | 209 | 50 | 252 | 6.97e-57 | 182 |
| MsG0880047091.01.T01 | AT2G21330 | 48.039 | 204 | 105 | 1 | 6 | 209 | 50 | 252 | 4.31e-56 | 182 |
| MsG0880047091.01.T01 | AT2G21330 | 48.039 | 204 | 105 | 1 | 6 | 209 | 50 | 252 | 5.08e-56 | 183 |
| MsG0880047091.01.T01 | AT2G01140 | 47.805 | 205 | 100 | 3 | 8 | 209 | 44 | 244 | 3.77e-55 | 180 |
| MsG0880047091.01.T01 | AT5G03690 | 90.909 | 88 | 8 | 0 | 123 | 210 | 31 | 118 | 1.38e-52 | 170 |
| MsG0880047091.01.T01 | AT5G03690 | 90.909 | 88 | 8 | 0 | 123 | 210 | 31 | 118 | 1.38e-52 | 170 |
Find 82 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGAAATAAAGTGAGGTTT+TGG | 0.257019 | 8:+81801474 | None:intergenic |
| TGCTTTGTATTGTAAAAGTT+TGG | 0.258242 | 8:-81800473 | MsG0880047091.01.T01:CDS |
| TGATCGAGGTAGGTTTGTTT+TGG | 0.314472 | 8:+81801405 | None:intergenic |
| AAGAGGGTAGGTTAAGAATA+AGG | 0.334430 | 8:+81801440 | None:intergenic |
| GTGGTGGTTATCTGTCTCTA+TGG | 0.368625 | 8:+81801580 | None:intergenic |
| GAGTGCTCAGATGGCTCATT+GGG | 0.370466 | 8:+81799843 | None:intergenic |
| ACCACCACTCAGGGTCTTGA+TGG | 0.384125 | 8:-81799942 | MsG0880047091.01.T01:CDS |
| TAGACGCTTTCCAATTGTTC+CGG | 0.385779 | 8:+81800802 | None:intergenic |
| GATGAGTCAACCGGAACAAT+TGG | 0.403195 | 8:-81800812 | MsG0880047091.01.T01:CDS |
| GAGCCTGAGATCCTTGTTGA+TGG | 0.408703 | 8:-81799747 | MsG0880047091.01.T01:CDS |
| GGTGTCCTTCAGTACCTTAG+TGG | 0.421088 | 8:-81800710 | MsG0880047091.01.T01:CDS |
| AGCAGCAAGAATACCCTTGC+CGG | 0.424830 | 8:+81800835 | None:intergenic |
| CTGCAGCGGTGCTTTGGTAG+AGG | 0.433294 | 8:+81800668 | None:intergenic |
| GGGTAGGTTAAGAATAAGGT+AGG | 0.436283 | 8:+81801444 | None:intergenic |
| ATATAGTGATTATGATGGAT+TGG | 0.437581 | 8:+81801503 | None:intergenic |
| TTGGCATATGACTGCATATC+GGG | 0.442827 | 8:+81799794 | None:intergenic |
| AGGGTACCGGTTGAGCTTGC+CGG | 0.446696 | 8:-81799977 | MsG0880047091.01.T01:intron |
| TTTATATATAGTGATTATGA+TGG | 0.454462 | 8:+81801498 | None:intergenic |
| AGGATCTCAGGCTCAACAAT+TGG | 0.457558 | 8:+81799756 | None:intergenic |
| GGACACCAGGGGCGGTGAAA+AGG | 0.463623 | 8:+81800726 | None:intergenic |
| AGAGTGCTCAGATGGCTCAT+TGG | 0.465315 | 8:+81799842 | None:intergenic |
| CCATGAGAATGCCTATGGTT+TGG | 0.465357 | 8:-81799817 | MsG0880047091.01.T01:CDS |
| TATAGTGATTATGATGGATT+GGG | 0.466756 | 8:+81801504 | None:intergenic |
| TGGCGTGCAGTGCTTAAAAT+CGG | 0.467744 | 8:-81799867 | MsG0880047091.01.T01:CDS |
| CTCTACCAAAGCACCGCTGC+AGG | 0.473908 | 8:-81800667 | MsG0880047091.01.T01:intron |
| AAGTACCTGCAGCGGTGCTT+TGG | 0.482170 | 8:+81800662 | None:intergenic |
| TGGATGTATCGACCTTGGTT+TGG | 0.487995 | 8:+81801558 | None:intergenic |
| CAAAGGAGGCGTACAACGAT+TGG | 0.496223 | 8:+81801538 | None:intergenic |
| TTGGTACAAGTCCATTCTCT+TGG | 0.496399 | 8:+81799775 | None:intergenic |
| ATTGCCAATGCTGCCTACAT+TGG | 0.501816 | 8:-81800863 | MsG0880047091.01.T01:CDS |
| CTTGCTGCTGATGAGTCAAC+CGG | 0.504792 | 8:-81800821 | MsG0880047091.01.T01:CDS |
| CTTGGCATATGACTGCATAT+CGG | 0.504914 | 8:+81799793 | None:intergenic |
| TGCAGCGGTGCTTTGGTAGA+GGG | 0.505020 | 8:+81800669 | None:intergenic |
| GGTCCATCAACAAGGATCTC+AGG | 0.508887 | 8:+81799744 | None:intergenic |
| GGGCGGTGAAAAGGAGTTCA+CGG | 0.513566 | 8:+81800735 | None:intergenic |
| GCAGTCATATGCCAAGAGAA+TGG | 0.513764 | 8:-81799786 | MsG0880047091.01.T01:CDS |
| CTACATTGGCACACCCGGCA+AGG | 0.521637 | 8:-81800849 | MsG0880047091.01.T01:CDS |
| TGTGCCAATGTAGGCAGCAT+TGG | 0.523397 | 8:+81800859 | None:intergenic |
| GCTGCCTACATTGGCACACC+CGG | 0.524564 | 8:-81800854 | MsG0880047091.01.T01:CDS |
| ATGTATCGACCTTGGTTTGG+TGG | 0.526547 | 8:+81801561 | None:intergenic |
| CTAAGGTACTGAAGGACACC+AGG | 0.526807 | 8:+81800713 | None:intergenic |
| GGTTGAGCTTGCCGGACTGA+TGG | 0.527658 | 8:-81799969 | MsG0880047091.01.T01:intron |
| ACGATTGGATGTATCGACCT+TGG | 0.527706 | 8:+81801553 | None:intergenic |
| TCTATCCATGAGAATGCCTA+TGG | 0.529948 | 8:-81799822 | MsG0880047091.01.T01:CDS |
| CTTGCCGGGTGTGCCAATGT+AGG | 0.530596 | 8:+81800850 | None:intergenic |
| TTCACGGAGAGCACGTCTGT+TGG | 0.544051 | 8:+81800751 | None:intergenic |
| GGTAGGTTAAGAATAAGGTA+GGG | 0.544916 | 8:+81801445 | None:intergenic |
| TATCGACCTTGGTTTGGTGG+TGG | 0.546419 | 8:+81801564 | None:intergenic |
| TTGGTAGAGGGTTCCTCAAG+AGG | 0.549326 | 8:+81800681 | None:intergenic |
| CCAAACCATAGGCATTCTCA+TGG | 0.550708 | 8:+81799817 | None:intergenic |
| TGTGCTAAGTACTATGAAGC+AGG | 0.559793 | 8:-81799906 | MsG0880047091.01.T01:CDS |
| GCAGCAAGAATACCCTTGCC+GGG | 0.561946 | 8:+81800836 | None:intergenic |
| AAGTTCGACATGATCGAGGT+AGG | 0.562374 | 8:+81801395 | None:intergenic |
| ACTCAGGGTCTTGATGGACT+TGG | 0.562479 | 8:-81799936 | MsG0880047091.01.T01:CDS |
| TATTGTAAAAGTTTGGATCG+TGG | 0.563181 | 8:-81800466 | MsG0880047091.01.T01:intron |
| TGGTGGTTTCTCCATCAGTC+CGG | 0.565031 | 8:+81799958 | None:intergenic |
| TACATTGGCACACCCGGCAA+GGG | 0.569483 | 8:-81800848 | MsG0880047091.01.T01:CDS |
| TGATGGAGAAACCACCACTC+AGG | 0.570496 | 8:-81799952 | MsG0880047091.01.T01:CDS |
| TCATGGATAGAGTGCTCAGA+TGG | 0.581969 | 8:+81799834 | None:intergenic |
| AGAGAGTGAGAAATAAAGTG+AGG | 0.589814 | 8:+81801468 | None:intergenic |
| TGACTCCACTAAGGTACTGA+AGG | 0.592512 | 8:+81800705 | None:intergenic |
| GCATGCTGCAAGGACACGCT+CGG | 0.593245 | 8:+81799692 | None:intergenic |
| GATGGAGAAACCACCACTCA+GGG | 0.594150 | 8:-81799951 | MsG0880047091.01.T01:CDS |
| TGCATATCGGGCCAAACCAT+AGG | 0.596299 | 8:+81799806 | None:intergenic |
| TCAAGAGGATGACTCCACTA+AGG | 0.604654 | 8:+81800696 | None:intergenic |
| TCCATCAAGACCCTGAGTGG+TGG | 0.624702 | 8:+81799941 | None:intergenic |
| TGTCATGAGGTCCATCAACA+AGG | 0.633917 | 8:+81799736 | None:intergenic |
| AAGGCTTGTAGCATGCTGCA+AGG | 0.635245 | 8:+81799682 | None:intergenic |
| AAGTCCATCAAGACCCTGAG+TGG | 0.657276 | 8:+81799938 | None:intergenic |
| CTTGAAGTTCGACATGATCG+AGG | 0.672998 | 8:+81801391 | None:intergenic |
| TTAGTGGAGTCATCCTCTTG+AGG | 0.677570 | 8:-81800694 | MsG0880047091.01.T01:CDS |
| GGGAAACAAGACAACAAAGG+AGG | 0.683439 | 8:+81801524 | None:intergenic |
| AACTTCAAGAGCAAGTACCA+TGG | 0.686368 | 8:-81801377 | MsG0880047091.01.T01:intron |
| CTAGAAGTAAGTACCTGCAG+CGG | 0.686889 | 8:+81800654 | None:intergenic |
| ACAATACAAAGCAATAGACA+TGG | 0.689604 | 8:+81800483 | None:intergenic |
| TAAGGTACTGAAGGACACCA+GGG | 0.689754 | 8:+81800714 | None:intergenic |
| AGATAACCACCACCAAACCA+AGG | 0.704161 | 8:-81801570 | MsG0880047091.01.T01:five_prime_UTR |
| AGTGCTCAGATGGCTCATTG+GGG | 0.704686 | 8:+81799844 | None:intergenic |
| GATAACAAAAGCAATAGACA+TGG | 0.712845 | 8:+81800514 | None:intergenic |
| ATTGGGAAACAAGACAACAA+AGG | 0.714069 | 8:+81801521 | None:intergenic |
| AAGGTACTGAAGGACACCAG+GGG | 0.750874 | 8:+81800715 | None:intergenic |
| GTACTGAAGGACACCAGGGG+CGG | 0.769749 | 8:+81800718 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTTATGAATTGTAAATC+AGG | - | Chr8:81800167-81800186 | MsG0880047091.01.T01:intron | 15.0% |
| !! | TATTTATGAATTGTAAATCA+GGG | - | Chr8:81800168-81800187 | MsG0880047091.01.T01:intron | 15.0% |
| !! | TTTATATATAGTGATTATGA+TGG | + | Chr8:81799763-81799782 | None:intergenic | 15.0% |
| !!! | TTACATGAATGTATTTTTTT+AGG | - | Chr8:81801201-81801220 | MsG0880047091.01.T01:intron | 15.0% |
| !! | AAATCAAGTAGATCTATTTA+AGG | - | Chr8:81800196-81800215 | MsG0880047091.01.T01:intron | 20.0% |
| !! | ATTTATATCAAAACCCTTTA+AGG | + | Chr8:81800137-81800156 | None:intergenic | 20.0% |
| !!! | GTCTAATCATGATTAATTTT+GGG | - | Chr8:81800291-81800310 | MsG0880047091.01.T01:intron | 20.0% |
| !!! | TGTCTAATCATGATTAATTT+TGG | - | Chr8:81800290-81800309 | MsG0880047091.01.T01:intron | 20.0% |
| ! | AAGAGAATAGAATTATACCA+TGG | + | Chr8:81799901-81799920 | None:intergenic | 25.0% |
| ! | CATATAAGAAAACGTGTTAA+AGG | + | Chr8:81800930-81800949 | None:intergenic | 25.0% |
| ! | TGCTTTGTATTGTAAAAGTT+TGG | - | Chr8:81800785-81800804 | MsG0880047091.01.T01:CDS | 25.0% |
| ! | TTAATTAGATTGTTGCAGTA+AGG | - | Chr8:81800323-81800342 | MsG0880047091.01.T01:intron | 25.0% |
| !! | ATGTATTGATGAACAATTCA+AGG | + | Chr8:81800685-81800704 | None:intergenic | 25.0% |
| !!! | ATATAGTGATTATGATGGAT+TGG | + | Chr8:81799758-81799777 | None:intergenic | 25.0% |
| !!! | CTTGTTCTGTTTTATTTGTA+TGG | - | Chr8:81800005-81800024 | MsG0880047091.01.T01:intron | 25.0% |
| !!! | TATAGTGATTATGATGGATT+GGG | + | Chr8:81799757-81799776 | None:intergenic | 25.0% |
| !!! | TCTGTTTTATTTGTATGGAT+CGG | - | Chr8:81800010-81800029 | MsG0880047091.01.T01:intron | 25.0% |
| !!! | TTCTTGATTGTTTCTTTTTG+TGG | - | Chr8:81801135-81801154 | MsG0880047091.01.T01:intron | 25.0% |
| AAATAGTGATCCATCATGTT+AGG | - | Chr8:81800982-81801001 | MsG0880047091.01.T01:intron | 30.0% | |
| ACAATACAAAGCAATAGACA+TGG | + | Chr8:81800778-81800797 | None:intergenic | 30.0% | |
| AGATCTATTGTTATCACCTT+CGG | - | Chr8:81799950-81799969 | MsG0880047091.01.T01:CDS | 30.0% | |
| AGTAAGGTTTATAGTTGTGT+TGG | - | Chr8:81800339-81800358 | MsG0880047091.01.T01:intron | 30.0% | |
| ATCTATTGCTTTGTGAAGTT+TGG | - | Chr8:81800883-81800902 | MsG0880047091.01.T01:intron | 30.0% | |
| CATTACATCAGATCCTTAAA+GGG | - | Chr8:81800121-81800140 | MsG0880047091.01.T01:intron | 30.0% | |
| GATAACAAAAGCAATAGACA+TGG | + | Chr8:81800747-81800766 | None:intergenic | 30.0% | |
| TATTGTAAAAGTTTGGATCG+TGG | - | Chr8:81800792-81800811 | MsG0880047091.01.T01:CDS | 30.0% | |
| TCATTACATCAGATCCTTAA+AGG | - | Chr8:81800120-81800139 | MsG0880047091.01.T01:intron | 30.0% | |
| TTGGAAGAGAATGAAAAAGA+GGG | + | Chr8:81799837-81799856 | None:intergenic | 30.0% | |
| TTTGGAAGAGAATGAAAAAG+AGG | + | Chr8:81799838-81799857 | None:intergenic | 30.0% | |
| ! | GAGAAATAAAGTGAGGTTTT+GGG | + | Chr8:81799786-81799805 | None:intergenic | 30.0% |
| ! | TGAGAAATAAAGTGAGGTTT+TGG | + | Chr8:81799787-81799806 | None:intergenic | 30.0% |
| !!! | ACATTTTTTGCATCCCAAAA+AGG | + | Chr8:81801062-81801081 | None:intergenic | 30.0% |
| !!! | ATTTTTTGCATCCCAAAAAG+GGG | + | Chr8:81801060-81801079 | None:intergenic | 30.0% |
| !!! | CATTTTTTGCATCCCAAAAA+GGG | + | Chr8:81801061-81801080 | None:intergenic | 30.0% |
| AAAAATTGAGCAAGATCCGA+AGG | + | Chr8:81799969-81799988 | None:intergenic | 35.0% | |
| AAGAGAATGAAAAAGAGGGT+AGG | + | Chr8:81799833-81799852 | None:intergenic | 35.0% | |
| AAGAGGGTAGGTTAAGAATA+AGG | + | Chr8:81799821-81799840 | None:intergenic | 35.0% | |
| AGAGAGTGAGAAATAAAGTG+AGG | + | Chr8:81799793-81799812 | None:intergenic | 35.0% | |
| ATTGGGAAACAAGACAACAA+AGG | + | Chr8:81799740-81799759 | None:intergenic | 35.0% | |
| CTTCTTCAAGACATCACAAA+AGG | + | Chr8:81801231-81801250 | None:intergenic | 35.0% | |
| GGTAGGTTAAGAATAAGGTA+GGG | + | Chr8:81799816-81799835 | None:intergenic | 35.0% | |
| TCTATTGCTTCCTAACATGA+TGG | + | Chr8:81800995-81801014 | None:intergenic | 35.0% | |
| TTGTATGGATCGGTAATTGT+TGG | - | Chr8:81800020-81800039 | MsG0880047091.01.T01:intron | 35.0% | |
| !!! | TTTTTTGCATCCCAAAAAGG+GGG | + | Chr8:81801059-81801078 | None:intergenic | 35.0% |
| AACTTCAAGAGCAAGTACCA+TGG | - | Chr8:81799881-81799900 | MsG0880047091.01.T01:CDS | 40.0% | |
| CCTGGTATTAAGGTTGACAA+GGG | - | Chr8:81801262-81801281 | MsG0880047091.01.T01:intron | 40.0% | |
| CTTGGCATATGACTGCATAT+CGG | + | Chr8:81801468-81801487 | None:intergenic | 40.0% | |
| GGGTAGGTTAAGAATAAGGT+AGG | + | Chr8:81799817-81799836 | None:intergenic | 40.0% | |
| TAGACGCTTTCCAATTGTTC+CGG | + | Chr8:81800459-81800478 | None:intergenic | 40.0% | |
| TCCTGGTATTAAGGTTGACA+AGG | - | Chr8:81801261-81801280 | MsG0880047091.01.T01:intron | 40.0% | |
| TCTATCCATGAGAATGCCTA+TGG | - | Chr8:81801436-81801455 | MsG0880047091.01.T01:five_prime_UTR | 40.0% | |
| TGTGCTAAGTACTATGAAGC+AGG | - | Chr8:81801352-81801371 | MsG0880047091.01.T01:intron | 40.0% | |
| TTGGCATATGACTGCATATC+GGG | + | Chr8:81801467-81801486 | None:intergenic | 40.0% | |
| TTGGTACAAGTCCATTCTCT+TGG | + | Chr8:81801486-81801505 | None:intergenic | 40.0% | |
| TTGTGATGTCTTGAAGAAGC+TGG | - | Chr8:81801232-81801251 | MsG0880047091.01.T01:intron | 40.0% | |
| ! | ATTAAGGTTGACAAGGGTAC+CGG | - | Chr8:81801268-81801287 | MsG0880047091.01.T01:intron | 40.0% |
| ! | GCACACTTTTGAATGTCATG+AGG | + | Chr8:81801538-81801557 | None:intergenic | 40.0% |
| ! | TTTTTGCATCCCAAAAAGGG+GGG | + | Chr8:81801058-81801077 | None:intergenic | 40.0% |
| !! | TGATCGAGGTAGGTTTGTTT+TGG | + | Chr8:81799856-81799875 | None:intergenic | 40.0% |
| AAGTTCGACATGATCGAGGT+AGG | + | Chr8:81799866-81799885 | None:intergenic | 45.0% | |
| AGATAACCACCACCAAACCA+AGG | - | Chr8:81799688-81799707 | MsG0880047091.01.T01:CDS | 45.0% | |
| AGGATCTCAGGCTCAACAAT+TGG | + | Chr8:81801505-81801524 | None:intergenic | 45.0% | |
| ATCAAGAACAGCTCGTAAGC+AGG | + | Chr8:81801123-81801142 | None:intergenic | 45.0% | |
| ATTGCCAATGCTGCCTACAT+TGG | - | Chr8:81800395-81800414 | MsG0880047091.01.T01:intron | 45.0% | |
| CCAAACCATAGGCATTCTCA+TGG | + | Chr8:81801444-81801463 | None:intergenic | 45.0% | |
| CCATGAGAATGCCTATGGTT+TGG | - | Chr8:81801441-81801460 | MsG0880047091.01.T01:five_prime_UTR | 45.0% | |
| CCCTTGTCAACCTTAATACC+AGG | + | Chr8:81801265-81801284 | None:intergenic | 45.0% | |
| CTAGAAGTAAGTACCTGCAG+CGG | + | Chr8:81800607-81800626 | None:intergenic | 45.0% | |
| CTTGAAGTTCGACATGATCG+AGG | + | Chr8:81799870-81799889 | None:intergenic | 45.0% | |
| GATGAGTCAACCGGAACAAT+TGG | - | Chr8:81800446-81800465 | MsG0880047091.01.T01:intron | 45.0% | |
| GCAGTCATATGCCAAGAGAA+TGG | - | Chr8:81801472-81801491 | MsG0880047091.01.T01:five_prime_UTR | 45.0% | |
| GGGAAACAAGACAACAAAGG+AGG | + | Chr8:81799737-81799756 | None:intergenic | 45.0% | |
| TCAAGAGGATGACTCCACTA+AGG | + | Chr8:81800565-81800584 | None:intergenic | 45.0% | |
| TGGCGTGCAGTGCTTAAAAT+CGG | - | Chr8:81801391-81801410 | MsG0880047091.01.T01:exon | 45.0% | |
| TGGTGTGCTTCCTGGTATTA+AGG | - | Chr8:81801252-81801271 | MsG0880047091.01.T01:intron | 45.0% | |
| TGTCATGAGGTCCATCAACA+AGG | + | Chr8:81801525-81801544 | None:intergenic | 45.0% | |
| TTAGTGGAGTCATCCTCTTG+AGG | - | Chr8:81800564-81800583 | MsG0880047091.01.T01:intron | 45.0% | |
| ! | ACGATTGGATGTATCGACCT+TGG | + | Chr8:81799708-81799727 | None:intergenic | 45.0% |
| ! | CAGGTGCACGTTTTGCTAAA+TGG | - | Chr8:81801371-81801390 | MsG0880047091.01.T01:intron | 45.0% |
| ! | TCATGGATAGAGTGCTCAGA+TGG | + | Chr8:81801427-81801446 | None:intergenic | 45.0% |
| ! | TGCATTTCTCCCCCCTTTTT+GGG | - | Chr8:81801046-81801065 | MsG0880047091.01.T01:intron | 45.0% |
| ! | TGGATGTATCGACCTTGGTT+TGG | + | Chr8:81799703-81799722 | None:intergenic | 45.0% |
| ! | TTGCATTTCTCCCCCCTTTT+TGG | - | Chr8:81801045-81801064 | MsG0880047091.01.T01:intron | 45.0% |
| !! | ATGTATCGACCTTGGTTTGG+TGG | + | Chr8:81799700-81799719 | None:intergenic | 45.0% |
| !! | TAAGGTACTGAAGGACACCA+GGG | + | Chr8:81800547-81800566 | None:intergenic | 45.0% |
| !! | TGACTCCACTAAGGTACTGA+AGG | + | Chr8:81800556-81800575 | None:intergenic | 45.0% |
| AAGGCTTGTAGCATGCTGCA+AGG | + | Chr8:81801579-81801598 | None:intergenic | 50.0% | |
| AAGTCCATCAAGACCCTGAG+TGG | + | Chr8:81801323-81801342 | None:intergenic | 50.0% | |
| AGCAGCAAGAATACCCTTGC+CGG | + | Chr8:81800426-81800445 | None:intergenic | 50.0% | |
| AGTGCTCAGATGGCTCATTG+GGG | + | Chr8:81801417-81801436 | None:intergenic | 50.0% | |
| CTTGCTGCTGATGAGTCAAC+CGG | - | Chr8:81800437-81800456 | MsG0880047091.01.T01:intron | 50.0% | |
| GAGCCTGAGATCCTTGTTGA+TGG | - | Chr8:81801511-81801530 | MsG0880047091.01.T01:five_prime_UTR | 50.0% | |
| GAGTGCTCAGATGGCTCATT+GGG | + | Chr8:81801418-81801437 | None:intergenic | 50.0% | |
| GATGGAGAAACCACCACTCA+GGG | - | Chr8:81801307-81801326 | MsG0880047091.01.T01:intron | 50.0% | |
| GGTCCATCAACAAGGATCTC+AGG | + | Chr8:81801517-81801536 | None:intergenic | 50.0% | |
| GGTGTCCTTCAGTACCTTAG+TGG | - | Chr8:81800548-81800567 | MsG0880047091.01.T01:intron | 50.0% | |
| TGATGGAGAAACCACCACTC+AGG | - | Chr8:81801306-81801325 | MsG0880047091.01.T01:intron | 50.0% | |
| TGCATATCGGGCCAAACCAT+AGG | + | Chr8:81801455-81801474 | None:intergenic | 50.0% | |
| TGGTGGTTTCTCCATCAGTC+CGG | + | Chr8:81801303-81801322 | None:intergenic | 50.0% | |
| TGTGCCAATGTAGGCAGCAT+TGG | + | Chr8:81800402-81800421 | None:intergenic | 50.0% | |
| TTGGTAGAGGGTTCCTCAAG+AGG | + | Chr8:81800580-81800599 | None:intergenic | 50.0% | |
| ! | AGAGTGCTCAGATGGCTCAT+TGG | + | Chr8:81801419-81801438 | None:intergenic | 50.0% |
| ! | CAAAGGAGGCGTACAACGAT+TGG | + | Chr8:81799723-81799742 | None:intergenic | 50.0% |
| !! | AAGGTACTGAAGGACACCAG+GGG | + | Chr8:81800546-81800565 | None:intergenic | 50.0% |
| !! | ACTCAGGGTCTTGATGGACT+TGG | - | Chr8:81801322-81801341 | MsG0880047091.01.T01:intron | 50.0% |
| !! | CTAAGGTACTGAAGGACACC+AGG | + | Chr8:81800548-81800567 | None:intergenic | 50.0% |
| !! | TATCGACCTTGGTTTGGTGG+TGG | + | Chr8:81799697-81799716 | None:intergenic | 50.0% |
| AAGTACCTGCAGCGGTGCTT+TGG | + | Chr8:81800599-81800618 | None:intergenic | 55.0% | |
| ACCACCACTCAGGGTCTTGA+TGG | - | Chr8:81801316-81801335 | MsG0880047091.01.T01:intron | 55.0% | |
| ATCAGTCCGGCAAGCTCAAC+CGG | + | Chr8:81801290-81801309 | None:intergenic | 55.0% | |
| GAAGAAGCTGGTGTGCTTCC+TGG | - | Chr8:81801244-81801263 | MsG0880047091.01.T01:intron | 55.0% | |
| GCAGCAAGAATACCCTTGCC+GGG | + | Chr8:81800425-81800444 | None:intergenic | 55.0% | |
| GGGCGGTGAAAAGGAGTTCA+CGG | + | Chr8:81800526-81800545 | None:intergenic | 55.0% | |
| TACATTGGCACACCCGGCAA+GGG | - | Chr8:81800410-81800429 | MsG0880047091.01.T01:intron | 55.0% | |
| TCCATCAAGACCCTGAGTGG+TGG | + | Chr8:81801320-81801339 | None:intergenic | 55.0% | |
| TGCAGCGGTGCTTTGGTAGA+GGG | + | Chr8:81800592-81800611 | None:intergenic | 55.0% | |
| ! | TTCACGGAGAGCACGTCTGT+TGG | + | Chr8:81800510-81800529 | None:intergenic | 55.0% |
| CTACATTGGCACACCCGGCA+AGG | - | Chr8:81800409-81800428 | MsG0880047091.01.T01:intron | 60.0% | |
| CTGCAGCGGTGCTTTGGTAG+AGG | + | Chr8:81800593-81800612 | None:intergenic | 60.0% | |
| CTTGCCGGGTGTGCCAATGT+AGG | + | Chr8:81800411-81800430 | None:intergenic | 60.0% | |
| GCATGCTGCAAGGACACGCT+CGG | + | Chr8:81801569-81801588 | None:intergenic | 60.0% | |
| GCTGCCTACATTGGCACACC+CGG | - | Chr8:81800404-81800423 | MsG0880047091.01.T01:intron | 60.0% | |
| GGTTGAGCTTGCCGGACTGA+TGG | - | Chr8:81801289-81801308 | MsG0880047091.01.T01:intron | 60.0% | |
| GTACTGAAGGACACCAGGGG+CGG | + | Chr8:81800543-81800562 | None:intergenic | 60.0% | |
| ! | GAACTCCTTTTCACCGCCCC+TGG | - | Chr8:81800527-81800546 | MsG0880047091.01.T01:intron | 60.0% |
| !! | AGGGTACCGGTTGAGCTTGC+CGG | - | Chr8:81801281-81801300 | MsG0880047091.01.T01:intron | 60.0% |
| !! | CTCTACCAAAGCACCGCTGC+AGG | - | Chr8:81800591-81800610 | MsG0880047091.01.T01:intron | 60.0% |
| GGACACCAGGGGCGGTGAAA+AGG | + | Chr8:81800535-81800554 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 81799680 | 81801600 | 81799680 | ID=MsG0880047091.01;Name=MsG0880047091.01 |
| Chr8 | mRNA | 81799680 | 81801600 | 81799680 | ID=MsG0880047091.01.T01;Parent=MsG0880047091.01;Name=MsG0880047091.01.T01;_AED=0.50;_eAED=0.55;_QI=195|0.33|0.5|1|0.66|0.75|4|0|211 |
| Chr8 | exon | 81799680 | 81799984 | 81799680 | ID=MsG0880047091.01.T01:exon:35206;Parent=MsG0880047091.01.T01 |
| Chr8 | exon | 81800467 | 81800543 | 81800467 | ID=MsG0880047091.01.T01:exon:35205;Parent=MsG0880047091.01.T01 |
| Chr8 | exon | 81800668 | 81800893 | 81800668 | ID=MsG0880047091.01.T01:exon:35204;Parent=MsG0880047091.01.T01 |
| Chr8 | exon | 81801378 | 81801600 | 81801378 | ID=MsG0880047091.01.T01:exon:35203;Parent=MsG0880047091.01.T01 |
| Chr8 | five_prime_UTR | 81801406 | 81801600 | 81801406 | ID=MsG0880047091.01.T01:five_prime_utr;Parent=MsG0880047091.01.T01 |
| Chr8 | CDS | 81801378 | 81801405 | 81801378 | ID=MsG0880047091.01.T01:cds;Parent=MsG0880047091.01.T01 |
| Chr8 | CDS | 81800668 | 81800893 | 81800668 | ID=MsG0880047091.01.T01:cds;Parent=MsG0880047091.01.T01 |
| Chr8 | CDS | 81800467 | 81800543 | 81800467 | ID=MsG0880047091.01.T01:cds;Parent=MsG0880047091.01.T01 |
| Chr8 | CDS | 81799680 | 81799984 | 81799680 | ID=MsG0880047091.01.T01:cds;Parent=MsG0880047091.01.T01 |
| Gene Sequence |
| Protein sequence |
