AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0006910

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0006910 MtrunA17_Chr1g0148961 100.000 134 0 0 1 134 1 134 1.02e-93 266
Msa0006910 MtrunA17_Chr1g0148951 100.000 134 0 0 1 134 1 134 1.02e-93 266
Msa0006910 MtrunA17_Chr1g0184901 86.567 134 18 0 1 134 1 134 1.96e-73 215
Msa0006910 MtrunA17_Chr1g0211651 81.250 128 24 0 7 134 4 131 2.88e-71 209
Msa0006910 MtrunA17_Chr4g0024701 66.418 134 25 1 1 134 1 114 6.90e-47 147
Msa0006910 MtrunA17_Chr2g0319191 64.545 110 37 2 24 132 14 122 1.42e-40 132
Msa0006910 MtrunA17_Chr2g0319181 64.545 110 37 2 24 132 14 122 1.91e-40 131
Msa0006910 MtrunA17_Chr7g0268831 58.333 132 47 4 1 130 1 126 2.47e-40 131
Msa0006910 MtrunA17_Chr7g0273351 58.197 122 49 2 10 130 3 123 8.09e-40 130
Msa0006910 MtrunA17_Chr7g0273331 58.197 122 49 2 10 130 59 179 9.14e-39 129
Msa0006910 MtrunA17_Chr7g0259151 61.682 107 39 2 25 130 21 126 2.97e-38 126
Msa0006910 MtrunA17_Chr7g0272611 55.652 115 49 2 19 132 19 132 7.29e-37 123
Msa0006910 MtrunA17_Chr4g0031041 59.292 113 44 2 23 134 15 126 4.29e-36 121
Msa0006910 MtrunA17_Chr2g0327951 59.292 113 44 2 23 134 56 167 8.62e-36 121
Msa0006910 MtrunA17_Chr4g0035621 61.111 108 40 2 27 133 25 131 4.35e-35 118
Msa0006910 MtrunA17_Chr8g0379311 60.550 109 41 2 27 134 25 132 4.84e-35 118
Msa0006910 MtrunA17_Chr4g0032301 59.633 109 42 2 27 134 25 132 5.44e-35 118
Msa0006910 MtrunA17_Chr4g0031001 59.633 109 42 2 27 134 25 132 6.61e-35 118
Msa0006910 MtrunA17_Chr4g0031651 59.633 109 42 2 27 134 25 132 6.76e-35 118
Msa0006910 MtrunA17_Chr2g0327931 60.185 108 41 2 27 133 24 130 8.79e-35 118
Msa0006910 MtrunA17_Chr7g0273341 53.448 116 40 5 19 132 50 153 3.35e-28 101
Msa0006910 MtrunA17_Chr4g0031031 62.687 67 24 1 55 120 17 83 3.79e-20 79.3
Msa0006910 MtrunA17_Chr6g0449661 45.283 106 47 4 27 130 86 182 6.63e-19 78.6
Msa0006910 MtrunA17_Chr3g0119971 44.340 106 48 4 27 130 81 177 1.70e-18 77.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0006910 AT1G52740.1 88.060 134 16 0 1 134 1 134 5.27e-76 222
Msa0006910 AT3G54560.1 84.559 136 19 1 1 134 1 136 7.75e-72 211
Msa0006910 AT3G54560.2 84.559 136 19 1 1 134 1 136 7.75e-72 211
Msa0006910 AT2G38810.1 81.618 136 23 1 1 134 1 136 1.01e-71 211
Msa0006910 AT2G38810.4 81.618 136 23 1 1 134 1 136 1.01e-71 211
Msa0006910 AT2G38810.3 81.618 136 23 1 1 134 1 136 1.01e-71 211
Msa0006910 AT2G38810.2 81.618 136 23 1 1 134 1 136 1.01e-71 211
Msa0006910 AT4G13570.1 66.667 111 33 1 18 124 8 118 3.28e-45 143
Msa0006910 AT4G13570.2 75.556 90 22 0 35 124 35 124 3.59e-44 141
Msa0006910 AT4G27230.2 64.545 110 37 2 24 132 14 122 2.42e-40 131
Msa0006910 AT4G27230.1 64.545 110 37 2 24 132 14 122 2.42e-40 131
Msa0006910 AT5G54640.1 64.545 110 37 2 24 132 14 122 2.45e-40 131
Msa0006910 AT3G20670.1 65.741 108 35 2 24 130 14 120 6.89e-40 130
Msa0006910 AT1G08880.1 64.762 105 35 2 25 128 21 124 1.01e-39 130
Msa0006910 AT1G51060.1 63.636 110 38 2 24 132 14 122 1.11e-39 130
Msa0006910 AT1G54690.1 63.810 105 36 2 25 128 21 124 2.89e-39 129
Msa0006910 AT5G02560.1 61.947 113 41 2 23 134 21 132 1.19e-38 128
Msa0006910 AT5G27670.1 60.870 115 43 2 19 132 18 131 4.54e-37 124
Msa0006910 AT5G59870.1 61.261 111 41 2 23 132 21 130 3.64e-36 121
Msa0006910 AT5G02560.2 51.095 137 41 3 23 134 21 156 3.79e-33 115

Find 53 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATTTAACTGCAGAGGTTT+TGG 0.254851 1_1:+9921544 Msa0006910:CDS
TCCTTGTCTTTGAGGTTTGC+TGG 0.259581 1_1:-9919024 None:intergenic
TCTTCTTGTCCTTGTCTTTG+AGG 0.316058 1_1:-9919032 None:intergenic
TTCCTCAAGAGCTGGTCTTC+AGG 0.343744 1_1:+9919068 Msa0006910:CDS
CCTCTGCAGTTAAATATTCC+AGG 0.399309 1_1:-9921538 None:intergenic
GGTGATGATAACTTTATTTG+TGG 0.403205 1_1:+9921801 Msa0006910:three_prime_UTR
GAACTGTTTGAACTGATTTG+AGG 0.432017 1_1:+9922003 Msa0006910:three_prime_UTR
CAATGGCACATGGAAGAGTT+GGG 0.442531 1_1:+9921486 Msa0006910:CDS
TATGAACATTCATTCCTTCG+AGG 0.453552 1_1:-9921729 None:intergenic
AGTTTATTCTGCCGCTATCC+TGG 0.454001 1_1:+9921520 Msa0006910:CDS
ACAATGGCACATGGAAGAGT+TGG 0.476378 1_1:+9921485 Msa0006910:CDS
GGAGCGAAGGGTTTGACAAC+CGG 0.477894 1_1:+9918994 Msa0006910:CDS
CTCATCAAAGGAACAATAGC+TGG 0.487626 1_1:+9921662 Msa0006910:CDS
TTGAAGTGCGAAAACATGTC+GGG 0.497395 1_1:+9918967 Msa0006910:exon
GTTTGAACTGATTTGAGGAA+AGG 0.499655 1_1:+9922008 Msa0006910:three_prime_UTR
ATAAGAGACTTGTGGATATG+AGG 0.507095 1_1:-9921698 None:intergenic
GGATAATTTGCTCCTTGCGT+TGG 0.524291 1_1:+9921822 Msa0006910:three_prime_UTR
AGACGATGGATACGTCCGAC+AGG 0.539450 1_1:-9921449 None:intergenic
AGCTCTTGAGGAACGAGATG+TGG 0.542232 1_1:-9919058 None:intergenic
AACCTGAAGACCAGCTCTTG+AGG 0.543571 1_1:-9919070 None:intergenic
ACATCTCGTTCCTCAAGAGC+TGG 0.546311 1_1:+9919060 Msa0006910:CDS
CCTGGAATATTTAACTGCAG+AGG 0.550682 1_1:+9921538 Msa0006910:CDS
CAATGCAAGCAAGGATCTGA+AGG 0.565081 1_1:+9921577 Msa0006910:CDS
CATATGTCTAGGATTAATGT+TGG 0.566765 1_1:+9921947 Msa0006910:three_prime_UTR
TGCGAAAACATGTCGGGGAA+AGG 0.567757 1_1:+9918973 Msa0006910:exon
GTTGGCTGGCAATGCAAGCA+AGG 0.571379 1_1:+9921568 Msa0006910:CDS
GAACTTGACACTCTCATCAA+AGG 0.571379 1_1:+9921650 Msa0006910:CDS
AGTTTCAGATAATCTAAAGA+AGG 0.572907 1_1:-9921864 None:intergenic
ACTTGTTGATAAGAGACTTG+TGG 0.572936 1_1:-9921706 None:intergenic
TGTCAAGTTCTTCGTCTCCA+CGG 0.583078 1_1:-9921637 None:intergenic
ATAGCAAGCTGTAGATGTCT+CGG 0.584334 1_1:-9921614 None:intergenic
CATCTACAGCTTGCTATCCG+TGG 0.586408 1_1:+9921620 Msa0006910:CDS
TCCATCGTCTTCTGAAGTCA+AGG 0.589423 1_1:+9921462 Msa0006910:CDS
TCAGATAATCTAAAGAAGGA+TGG 0.590080 1_1:-9921860 None:intergenic
TTTGAAGTGCGAAAACATGT+CGG 0.591882 1_1:+9918966 Msa0006910:exon
GTATGGTACTGCATATGTCT+AGG 0.597951 1_1:+9921936 Msa0006910:three_prime_UTR
CATGTCGGGGAAAGGAGCGA+AGG 0.599837 1_1:+9918981 Msa0006910:exon
GCTCTTGAGGAACGAGATGT+GGG 0.607406 1_1:-9919057 None:intergenic
AAAGGAACAATAGCTGGTGG+TGG 0.608922 1_1:+9921668 Msa0006910:CDS
TCTTATCAACAAGTCCTCGA+AGG 0.615894 1_1:+9921715 Msa0006910:CDS
AAGTCAAGGACAATGGCACA+TGG 0.622887 1_1:+9921476 Msa0006910:CDS
ATGTCGGGGAAAGGAGCGAA+GGG 0.624226 1_1:+9918982 Msa0006910:CDS
GACGATGGATACGTCCGACA+GGG 0.626692 1_1:-9921448 None:intergenic
TTCTACATACAGTTCCCTGT+CGG 0.628096 1_1:+9921434 Msa0006910:intron
AAATCAATCAAACCAACGCA+AGG 0.631791 1_1:-9921834 None:intergenic
ACCAGCAAACCTCAAAGACA+AGG 0.637885 1_1:+9919023 Msa0006910:CDS
TAATTCGTTCTAATTAACGC+AGG 0.639924 1_1:+9921750 Msa0006910:three_prime_UTR
AATGGCACATGGAAGAGTTG+GGG 0.645846 1_1:+9921487 Msa0006910:CDS
TGAAGTGCGAAAACATGTCG+GGG 0.649052 1_1:+9918968 Msa0006910:exon
TCTTCTGAAGTCAAGGACAA+TGG 0.655563 1_1:+9921469 Msa0006910:CDS
ATCAAAGGAACAATAGCTGG+TGG 0.661257 1_1:+9921665 Msa0006910:CDS
TCCTTGACTTCAGAAGACGA+TGG 0.668973 1_1:-9921463 None:intergenic
AGTTAAATATTCCAGGATAG+CGG 0.686777 1_1:-9921531 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATAAACATAAAAAATATTT+TGG + chr1_1:9920575-9920594 Msa0006910:intron 10.0%
!!! TTTTTAAGTTATAGTATTTT+AGG + chr1_1:9920672-9920691 Msa0006910:intron 10.0%
!!! TTTTTATCAAGATTCAAATT+TGG + chr1_1:9919384-9919403 Msa0006910:intron 15.0%
!!! TTTTATCAAGATTCAAATTT+GGG + chr1_1:9919385-9919404 Msa0006910:intron 15.0%
!!! AGTATTATTTTATAACTGTT+TGG + chr1_1:9920867-9920886 Msa0006910:intron 15.0%
!!! TTTTGTTAAAAAATTGTGAC+AGG + chr1_1:9919273-9919292 Msa0006910:intron 20.0%
!!! TTTTTATCTAAGATGAAGAA+TGG + chr1_1:9919345-9919364 Msa0006910:intron 20.0%
!!! AATTACCTTGTTTTGTTTTA+TGG + chr1_1:9919578-9919597 Msa0006910:intron 20.0%
!!! TTGAATTTTATTGAACAACT+TGG + chr1_1:9919751-9919770 Msa0006910:intron 20.0%
!!! TCAAATTAGTTTCAGAATTA+TGG + chr1_1:9919804-9919823 Msa0006910:intron 20.0%
!!! AGAAGGGAAATAATAATTTT+AGG - chr1_1:9920201-9920220 None:intergenic 20.0%
!! TTATTATTTCCCTTCTTAAT+AGG + chr1_1:9920205-9920224 Msa0006910:intron 20.0%
!! ACGTATAATATATATACAAG+AGG - chr1_1:9920446-9920465 None:intergenic 20.0%
!!! GATGGATTTTAATGTAATTT+CGG + chr1_1:9921780-9921799 Msa0006910:three_prime_UTR 20.0%
!!! AACTTTTTTCTCTTTTGATA+TGG + chr1_1:9921883-9921902 Msa0006910:three_prime_UTR 20.0%
! AAAAAATTGTGACAGGATAT+TGG + chr1_1:9919280-9919299 Msa0006910:intron 25.0%
! AAAAATTGTGACAGGATATT+GGG + chr1_1:9919281-9919300 Msa0006910:intron 25.0%
! GAAAATCACTATATAGACAA+CGG - chr1_1:9919456-9919475 None:intergenic 25.0%
! CAGTTAAGCAAATTGAAAAT+GGG - chr1_1:9919505-9919524 None:intergenic 25.0%
! TCAGTTAAGCAAATTGAAAA+TGG - chr1_1:9919506-9919525 None:intergenic 25.0%
! ATAAGCCATAAAACAAAACA+AGG - chr1_1:9919586-9919605 None:intergenic 25.0%
! TTTCCATTTGCAAATTTCAT+GGG - chr1_1:9919716-9919735 None:intergenic 25.0%
!! TTTTCCATTTGCAAATTTCA+TGG - chr1_1:9919717-9919736 None:intergenic 25.0%
! ATTAGATAAAAGTTAGGAGA+AGG - chr1_1:9919778-9919797 None:intergenic 25.0%
!! CCTAACTTTTATCTAATCTA+CGG + chr1_1:9919781-9919800 Msa0006910:intron 25.0%
! TATTAATTATCTGTGTGTAG+GGG - chr1_1:9919884-9919903 None:intergenic 25.0%
! CTATTAATTATCTGTGTGTA+GGG - chr1_1:9919885-9919904 None:intergenic 25.0%
! ACTATTAATTATCTGTGTGT+AGG - chr1_1:9919886-9919905 None:intergenic 25.0%
!!! GGCTGTTTATTTTATTTCTT+TGG + chr1_1:9920043-9920062 Msa0006910:intron 25.0%
! AAAGGAAGACAATAAACTAA+AGG - chr1_1:9920104-9920123 None:intergenic 25.0%
!! TCTCTTTTCGAAAAAAGAAA+AGG - chr1_1:9920122-9920141 None:intergenic 25.0%
!!! GGGAAATAATAATTTTAGGA+GGG - chr1_1:9920197-9920216 None:intergenic 25.0%
!! AGGGAAATAATAATTTTAGG+AGG - chr1_1:9920198-9920217 None:intergenic 25.0%
! ACATATACACCTATTAAGAA+GGG - chr1_1:9920217-9920236 None:intergenic 25.0%
! TACATATACACCTATTAAGA+AGG - chr1_1:9920218-9920237 None:intergenic 25.0%
! TATGTTTGTATATGTGAGTA+AGG + chr1_1:9920248-9920267 Msa0006910:intron 25.0%
! TGTAGTTATCACTTAATCTT+TGG + chr1_1:9920468-9920487 Msa0006910:intron 25.0%
! AGAATTTCTTAGTGATTCAT+TGG - chr1_1:9920649-9920668 None:intergenic 25.0%
!!! ATTTTAGCATGCTTAAAATG+TGG - chr1_1:9921326-9921345 None:intergenic 25.0%
! GTAAATTATGTTGCATTTGT+TGG + chr1_1:9921359-9921378 Msa0006910:intron 25.0%
! AGTTTCAGATAATCTAAAGA+AGG - chr1_1:9921867-9921886 None:intergenic 25.0%
AAGAAAACGATGAAGAGAAA+GGG - chr1_1:9919115-9919134 None:intergenic 30.0%
CCAAAACAAAAGAGTGAAAA+AGG - chr1_1:9919171-9919190 None:intergenic 30.0%
!! CCTTTTTCACTCTTTTGTTT+TGG + chr1_1:9919168-9919187 Msa0006910:intron 30.0%
AATTTCATGGGTGTAAATGT+TGG - chr1_1:9919704-9919723 None:intergenic 30.0%
CCGTAGATTAGATAAAAGTT+AGG - chr1_1:9919784-9919803 None:intergenic 30.0%
TTAGTTTCAGAATTATGGCA+CGG + chr1_1:9919809-9919828 Msa0006910:intron 30.0%
TTGAATATGTTCACATGTGT+CGG + chr1_1:9919923-9919942 Msa0006910:intron 30.0%
! TTGGACTTTTAATAGAGACT+AGG + chr1_1:9920062-9920081 Msa0006910:intron 30.0%
GTATTAGAGAATGTGTTCAA+AGG - chr1_1:9920287-9920306 None:intergenic 30.0%
TCTAATACTCACTCTCTTAT+TGG + chr1_1:9920299-9920318 Msa0006910:intron 30.0%
ATATATACAAGAGGAATGCT+AGG - chr1_1:9920437-9920456 None:intergenic 30.0%
AGTTATCACTTAATCTTTGG+TGG + chr1_1:9920471-9920490 Msa0006910:intron 30.0%
TGCGAAAGAATACAAACAAA+AGG - chr1_1:9920557-9920576 None:intergenic 30.0%
!!! TGTTTTATTTGTCAAGACCA+AGG - chr1_1:9920615-9920634 None:intergenic 30.0%
! TGGTCTTGACAAATAAAACA+TGG + chr1_1:9920615-9920634 Msa0006910:intron 30.0%
GGTCTTGACAAATAAAACAT+GGG + chr1_1:9920616-9920635 Msa0006910:intron 30.0%
CTTGTGTGGAAAAATTATCT+TGG + chr1_1:9920710-9920729 Msa0006910:intron 30.0%
! ACTTGATAAGAAGTCTTATG+AGG + chr1_1:9920835-9920854 Msa0006910:intron 30.0%
!!! AGCTTGAATGGTTTTTTGTA+GGG - chr1_1:9920895-9920914 None:intergenic 30.0%
! TGATTATTTCCTTTTGCAAG+CGG + chr1_1:9921256-9921275 Msa0006910:intron 30.0%
AATAATTAACCGCTTGCAAA+AGG - chr1_1:9921268-9921287 None:intergenic 30.0%
ATGTAGAAAGATGTTCATGA+TGG - chr1_1:9921422-9921441 None:intergenic 30.0%
AGTTAAATATTCCAGGATAG+CGG - chr1_1:9921534-9921553 None:intergenic 30.0%
! ATATTTAACTGCAGAGGTTT+TGG + chr1_1:9921544-9921563 Msa0006910:CDS 30.0%
TAATTCGTTCTAATTAACGC+AGG + chr1_1:9921750-9921769 Msa0006910:three_prime_UTR 30.0%
ATTAACGCAGGAAAAAAAGA+TGG + chr1_1:9921762-9921781 Msa0006910:three_prime_UTR 30.0%
! GGTGATGATAACTTTATTTG+TGG + chr1_1:9921801-9921820 Msa0006910:three_prime_UTR 30.0%
TCAGATAATCTAAAGAAGGA+TGG - chr1_1:9921863-9921882 None:intergenic 30.0%
!! ACATTCTCACTTTTGTTGTA+TGG + chr1_1:9921919-9921938 Msa0006910:three_prime_UTR 30.0%
! CATATGTCTAGGATTAATGT+TGG + chr1_1:9921947-9921966 Msa0006910:three_prime_UTR 30.0%
! TTTGAAGTGCGAAAACATGT+CGG + chr1_1:9918966-9918985 Msa0006910:exon 35.0%
CAAGAAAACGATGAAGAGAA+AGG - chr1_1:9919116-9919135 None:intergenic 35.0%
GATTTCTTGTGTCATGTTGA+TGG + chr1_1:9919524-9919543 Msa0006910:intron 35.0%
AATTTGCCTCATGAAACTGT+AGG + chr1_1:9919675-9919694 Msa0006910:intron 35.0%
ACACCCATGAAATTTGCAAA+TGG + chr1_1:9919710-9919729 Msa0006910:intron 35.0%
ACGCCTTTAATCTTAAGTGT+TGG + chr1_1:9920005-9920024 Msa0006910:intron 35.0%
GCACCAACACTTAAGATTAA+AGG - chr1_1:9920011-9920030 None:intergenic 35.0%
!! TGTTGGTGCTACATTGTTTA+TGG + chr1_1:9920022-9920041 Msa0006910:intron 35.0%
CTAAAGGAGACTTCAAATCA+AGG - chr1_1:9920088-9920107 None:intergenic 35.0%
GAAAAGAGATGATGCATGAA+TGG + chr1_1:9920133-9920152 Msa0006910:intron 35.0%
!! TAATAATTTTAGGAGGGCCA+TGG - chr1_1:9920191-9920210 None:intergenic 35.0%
AAAATTGAACCCACACAAAG+TGG + chr1_1:9920349-9920368 Msa0006910:intron 35.0%
! AAATGCTAACAAGTCTTGTG+TGG + chr1_1:9920696-9920715 Msa0006910:intron 35.0%
!!! CTTGAATGGTTTTTTGTAGG+GGG - chr1_1:9920893-9920912 None:intergenic 35.0%
!!! GCTTGAATGGTTTTTTGTAG+GGG - chr1_1:9920894-9920913 None:intergenic 35.0%
!!! GAGCTTGAATGGTTTTTTGT+AGG - chr1_1:9920896-9920915 None:intergenic 35.0%
! TACATTTTCCTTCTCGCTTT+TGG + chr1_1:9921067-9921086 Msa0006910:intron 35.0%
TTAGTAATCCAAAAGCGAGA+AGG - chr1_1:9921078-9921097 None:intergenic 35.0%
! CAAAAAACCTTTGACTTACC+AGG - chr1_1:9921143-9921162 None:intergenic 35.0%
!! GCATGCTAAAATTTGTTGTC+TGG + chr1_1:9921334-9921353 Msa0006910:intron 35.0%
ATTTATCCCACATCATCATC+CGG + chr1_1:9921392-9921411 Msa0006910:intron 35.0%
! AGATGTTCATGATGGAAAAC+CGG - chr1_1:9921414-9921433 None:intergenic 35.0%
ATAAGAGACTTGTGGATATG+AGG - chr1_1:9921701-9921720 None:intergenic 35.0%
! ACTTGTTGATAAGAGACTTG+TGG - chr1_1:9921709-9921728 None:intergenic 35.0%
TATGAACATTCATTCCTTCG+AGG - chr1_1:9921732-9921751 None:intergenic 35.0%
AAATCAATCAAACCAACGCA+AGG - chr1_1:9921837-9921856 None:intergenic 35.0%
!! GAACTGTTTGAACTGATTTG+AGG + chr1_1:9922003-9922022 Msa0006910:three_prime_UTR 35.0%
!! GTTTGAACTGATTTGAGGAA+AGG + chr1_1:9922008-9922027 Msa0006910:three_prime_UTR 35.0%
TTGAAGTGCGAAAACATGTC+GGG + chr1_1:9918967-9918986 Msa0006910:exon 40.0%
TCTTCTTGTCCTTGTCTTTG+AGG - chr1_1:9919035-9919054 None:intergenic 40.0%
GATGAAGAGAAAGGGTAAGA+GGG - chr1_1:9919107-9919126 None:intergenic 40.0%
!! TGTCATGTTGATGGTGTACA+TGG + chr1_1:9919533-9919552 Msa0006910:intron 40.0%
! GTATCTAGGACCTTGAGTTA+GGG + chr1_1:9919635-9919654 Msa0006910:intron 40.0%
! TATCTAGGACCTTGAGTTAG+GGG + chr1_1:9919636-9919655 Msa0006910:intron 40.0%
TAATTATCTGTGTGTAGGGG+CGG - chr1_1:9919881-9919900 None:intergenic 40.0%
TACCAACACATGTTTCACTC+CGG + chr1_1:9919980-9919999 Msa0006910:intron 40.0%
!! CTTAAGATTAAAGGCGTCTC+CGG - chr1_1:9920002-9920021 None:intergenic 40.0%
TCTTCTTAACAAGTGCCCTA+AGG + chr1_1:9920810-9920829 Msa0006910:intron 40.0%
CTTCTTAACAAGTGCCCTAA+GGG + chr1_1:9920811-9920830 Msa0006910:intron 40.0%
CTTCTTATCAAGTGCCCTTA+GGG - chr1_1:9920828-9920847 None:intergenic 40.0%
ACTTCTTATCAAGTGCCCTT+AGG - chr1_1:9920829-9920848 None:intergenic 40.0%
AAGTAGCAGCCTGACATAAA+AGG + chr1_1:9921114-9921133 Msa0006910:intron 40.0%
CTGTGAGTGACTAGTATCTT+TGG + chr1_1:9921222-9921241 Msa0006910:intron 40.0%
TTCTACATACAGTTCCCTGT+CGG + chr1_1:9921434-9921453 Msa0006910:intron 40.0%
!! TCTTCTGAAGTCAAGGACAA+TGG + chr1_1:9921469-9921488 Msa0006910:CDS 40.0%
CCTCTGCAGTTAAATATTCC+AGG - chr1_1:9921541-9921560 None:intergenic 40.0%
CCTGGAATATTTAACTGCAG+AGG + chr1_1:9921538-9921557 Msa0006910:CDS 40.0%
ATAGCAAGCTGTAGATGTCT+CGG - chr1_1:9921617-9921636 None:intergenic 40.0%
GAACTTGACACTCTCATCAA+AGG + chr1_1:9921650-9921669 Msa0006910:CDS 40.0%
CTCATCAAAGGAACAATAGC+TGG + chr1_1:9921662-9921681 Msa0006910:CDS 40.0%
ATCAAAGGAACAATAGCTGG+TGG + chr1_1:9921665-9921684 Msa0006910:CDS 40.0%
TCTTATCAACAAGTCCTCGA+AGG + chr1_1:9921715-9921734 Msa0006910:CDS 40.0%
GTATGGTACTGCATATGTCT+AGG + chr1_1:9921936-9921955 Msa0006910:three_prime_UTR 40.0%
TGAAGTGCGAAAACATGTCG+GGG + chr1_1:9918968-9918987 Msa0006910:exon 45.0%
!!! GAGGTTTGCTGGTGTTTTAC+CGG - chr1_1:9919016-9919035 None:intergenic 45.0%
ACCAGCAAACCTCAAAGACA+AGG + chr1_1:9919023-9919042 Msa0006910:CDS 45.0%
!! TCCTTGTCTTTGAGGTTTGC+TGG - chr1_1:9919027-9919046 None:intergenic 45.0%
CGATGAAGAGAAAGGGTAAG+AGG - chr1_1:9919108-9919127 None:intergenic 45.0%
ACAAAGTCAGTGGCGTATCT+AGG + chr1_1:9919621-9919640 Msa0006910:intron 45.0%
! CGTATCTAGGACCTTGAGTT+AGG + chr1_1:9919634-9919653 Msa0006910:intron 45.0%
! ATCTAGGACCTTGAGTTAGG+GGG + chr1_1:9919637-9919656 Msa0006910:intron 45.0%
TGGACTCCTACAGTTTCATG+AGG - chr1_1:9919684-9919703 None:intergenic 45.0%
! TATGTTCACATGTGTCGGTG+TGG + chr1_1:9919928-9919947 Msa0006910:intron 45.0%
AGATGATGCATGAATGGCTG+TGG + chr1_1:9920139-9920158 Msa0006910:intron 45.0%
ATTGAACCCACACAAAGTGG+TGG + chr1_1:9920352-9920371 Msa0006910:intron 45.0%
TTGAACCCACACAAAGTGGT+GGG + chr1_1:9920353-9920372 Msa0006910:intron 45.0%
TATGTCCCACCACTTTGTGT+GGG - chr1_1:9920361-9920380 None:intergenic 45.0%
! CTCTCTAGCACTCACTCTTT+TGG - chr1_1:9920396-9920415 None:intergenic 45.0%
!! CTTAATCTTTGGTGGTGCAG+TGG + chr1_1:9920479-9920498 Msa0006910:intron 45.0%
!!! GCAGTGGTAATCCGCTTTTT+TGG + chr1_1:9920495-9920514 Msa0006910:intron 45.0%
CCTCATAGGAGCCAAAAAAG+CGG - chr1_1:9920509-9920528 None:intergenic 45.0%
ACTCGAGCTTCTATCCTCAT+AGG - chr1_1:9920523-9920542 None:intergenic 45.0%
TGGAGATGTGATTCGAACCT+TGG + chr1_1:9920595-9920614 Msa0006910:intron 45.0%
TATCAGCGACAGAGCTTGAA+TGG - chr1_1:9920907-9920926 None:intergenic 45.0%
TTCAAGCTCTGTCGCTGATA+AGG + chr1_1:9920907-9920926 Msa0006910:intron 45.0%
!! TATGTCAGGCTGCTACTTTG+CGG - chr1_1:9921112-9921131 None:intergenic 45.0%
! GGAAAACCGGATGATGATGT+GGG - chr1_1:9921401-9921420 None:intergenic 45.0%
! TGGAAAACCGGATGATGATG+TGG - chr1_1:9921402-9921421 None:intergenic 45.0%
!! TCCATCGTCTTCTGAAGTCA+AGG + chr1_1:9921462-9921481 Msa0006910:CDS 45.0%
TCCTTGACTTCAGAAGACGA+TGG - chr1_1:9921466-9921485 None:intergenic 45.0%
AAGTCAAGGACAATGGCACA+TGG + chr1_1:9921476-9921495 Msa0006910:CDS 45.0%
ACAATGGCACATGGAAGAGT+TGG + chr1_1:9921485-9921504 Msa0006910:CDS 45.0%
CAATGGCACATGGAAGAGTT+GGG + chr1_1:9921486-9921505 Msa0006910:CDS 45.0%
AATGGCACATGGAAGAGTTG+GGG + chr1_1:9921487-9921506 Msa0006910:CDS 45.0%
AGTTTATTCTGCCGCTATCC+TGG + chr1_1:9921520-9921539 Msa0006910:CDS 45.0%
!!! AACTGCAGAGGTTTTGGAGT+TGG + chr1_1:9921550-9921569 Msa0006910:CDS 45.0%
CAATGCAAGCAAGGATCTGA+AGG + chr1_1:9921577-9921596 Msa0006910:CDS 45.0%
TGTCAAGTTCTTCGTCTCCA+CGG - chr1_1:9921640-9921659 None:intergenic 45.0%
AAAGGAACAATAGCTGGTGG+TGG + chr1_1:9921668-9921687 Msa0006910:CDS 45.0%
!! GGATAATTTGCTCCTTGCGT+TGG + chr1_1:9921822-9921841 Msa0006910:three_prime_UTR 45.0%
TGCGAAAACATGTCGGGGAA+AGG + chr1_1:9918973-9918992 Msa0006910:exon 50.0%
GCTCTTGAGGAACGAGATGT+GGG - chr1_1:9919060-9919079 None:intergenic 50.0%
AGCTCTTGAGGAACGAGATG+TGG - chr1_1:9919061-9919080 None:intergenic 50.0%
ACATCTCGTTCCTCAAGAGC+TGG + chr1_1:9919060-9919079 Msa0006910:CDS 50.0%
!! TTCCTCAAGAGCTGGTCTTC+AGG + chr1_1:9919068-9919087 Msa0006910:CDS 50.0%
AACCTGAAGACCAGCTCTTG+AGG - chr1_1:9919073-9919092 None:intergenic 50.0%
GCGCACAAACACAAAGTCAG+TGG + chr1_1:9919611-9919630 Msa0006910:intron 50.0%
! TCTAGGACCTTGAGTTAGGG+GGG + chr1_1:9919638-9919657 Msa0006910:intron 50.0%
AAGTTTGCCCCCCTAACTCA+AGG - chr1_1:9919648-9919667 None:intergenic 50.0%
CTCCGGAGTGAAACATGTGT+TGG - chr1_1:9919985-9920004 None:intergenic 50.0%
TGATGCATGAATGGCTGTGG+CGG + chr1_1:9920142-9920161 Msa0006910:intron 50.0%
CGGATGGTAGAAGGGATAGA+GGG + chr1_1:9920162-9920181 Msa0006910:intron 50.0%
ATGGTAGAAGGGATAGAGGG+TGG + chr1_1:9920165-9920184 Msa0006910:intron 50.0%
GTATGTCCCACCACTTTGTG+TGG - chr1_1:9920362-9920381 None:intergenic 50.0%
!!! CCGCTTTTTTGGCTCCTATG+AGG + chr1_1:9920506-9920525 Msa0006910:intron 50.0%
TCTGTCGCTGATAAGGTGAG+CGG + chr1_1:9920914-9920933 Msa0006910:intron 50.0%
! ACCAGGCAGCCTTTTATGTC+AGG - chr1_1:9921126-9921145 None:intergenic 50.0%
AAGGCTGCCTGGTAAGTCAA+AGG + chr1_1:9921133-9921152 Msa0006910:intron 50.0%
TGCTTCAGCCACATGTGTCA+TGG + chr1_1:9921167-9921186 Msa0006910:intron 50.0%
TGCTGTAGCCATGACACATG+TGG - chr1_1:9921178-9921197 None:intergenic 50.0%
ACATGTGTCATGGCTACAGC+AGG + chr1_1:9921177-9921196 Msa0006910:intron 50.0%
!! CATCTACAGCTTGCTATCCG+TGG + chr1_1:9921620-9921639 Msa0006910:CDS 50.0%
ATGTCGGGGAAAGGAGCGAA+GGG + chr1_1:9918982-9919001 Msa0006910:CDS 55.0%
GGAGCGAAGGGTTTGACAAC+CGG + chr1_1:9918994-9919013 Msa0006910:CDS 55.0%
! CACATGTGTCGGTGTGGTGT+CGG + chr1_1:9919934-9919953 Msa0006910:intron 55.0%
! ACATGTGTCGGTGTGGTGTC+GGG + chr1_1:9919935-9919954 Msa0006910:intron 55.0%
GCGGATGGTAGAAGGGATAG+AGG + chr1_1:9920161-9920180 Msa0006910:intron 55.0%
GCCTGACATAAAAGGCTGCC+TGG + chr1_1:9921122-9921141 Msa0006910:intron 55.0%
GACGATGGATACGTCCGACA+GGG - chr1_1:9921451-9921470 None:intergenic 55.0%
AGACGATGGATACGTCCGAC+AGG - chr1_1:9921452-9921471 None:intergenic 55.0%
!!! GCAGAGGTTTTGGAGTTGGC+TGG + chr1_1:9921554-9921573 Msa0006910:CDS 55.0%
GTTGGCTGGCAATGCAAGCA+AGG + chr1_1:9921568-9921587 Msa0006910:CDS 55.0%
CATGTCGGGGAAAGGAGCGA+AGG + chr1_1:9918981-9919000 Msa0006910:exon 60.0%
! GCATGAATGGCTGTGGCGGA+TGG + chr1_1:9920146-9920165 Msa0006910:intron 60.0%
!! TGGCTGTGGCGGATGGTAGA+AGG + chr1_1:9920153-9920172 Msa0006910:intron 60.0%
!! GGCTGTGGCGGATGGTAGAA+GGG + chr1_1:9920154-9920173 Msa0006910:intron 60.0%
GAAGGGATAGAGGGTGGCCA+TGG + chr1_1:9920171-9920190 Msa0006910:intron 60.0%
! TGTCGGTGTGGTGTCGGGCT+TGG + chr1_1:9919940-9919959 Msa0006910:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 9918934 9922033 9918934 ID=Msa0006910;Name=Msa0006910
chr1_1 mRNA 9918934 9922033 9918934 ID=Msa0006910-mRNA-1;Parent=Msa0006910;Name=Msa0006910-mRNA-1;_AED=0.28;_eAED=0.28;_QI=48|1|1|1|1|1|2|291|134
chr1_1 exon 9918934 9919089 9918934 ID=Msa0006910-mRNA-1:exon:3595;Parent=Msa0006910-mRNA-1
chr1_1 exon 9921446 9922033 9921446 ID=Msa0006910-mRNA-1:exon:3596;Parent=Msa0006910-mRNA-1
chr1_1 five_prime_UTR 9918934 9918981 9918934 ID=Msa0006910-mRNA-1:five_prime_utr;Parent=Msa0006910-mRNA-1
chr1_1 CDS 9918982 9919089 9918982 ID=Msa0006910-mRNA-1:cds;Parent=Msa0006910-mRNA-1
chr1_1 CDS 9921446 9921742 9921446 ID=Msa0006910-mRNA-1:cds;Parent=Msa0006910-mRNA-1
chr1_1 three_prime_UTR 9921743 9922033 9921743 ID=Msa0006910-mRNA-1:three_prime_utr;Parent=Msa0006910-mRNA-1
Gene Sequence

>Msa0006910

ATGTCGGGGAAAGGAGCGAAGGGTTTGACAACCGGTAAAACACCAGCAAACCTCAAAGACAAGGACAAGAAGAAACCCACATCTCGTTCCTCAAGAGCTGGTCTTCAGTTCCCTGTCGGACGTATCCATCGTCTTCTGAAGTCAAGGACAATGGCACATGGAAGAGTTGGGGCTACAGCTGCAGTTTATTCTGCCGCTATCCTGGAATATTTAACTGCAGAGGTTTTGGAGTTGGCTGGCAATGCAAGCAAGGATCTGAAGGTGAAGCGTATTACACCGAGACATCTACAGCTTGCTATCCGTGGAGACGAAGAACTTGACACTCTCATCAAAGGAACAATAGCTGGTGGTGGTGTTATTCCTCATATCCACAAGTCTCTTATCAACAAGTCCTCGAAGGAATGA
Protein sequence

>Msa0006910

MSGKGAKGLTTGKTPANLKDKDKKKPTSRSSRAGLQFPVGRIHRLLKSRTMAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE*