AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0100740


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0100740 MtrunA17_Chr1g0148961 100.000 134 0 0 1 134 1 134 1.02e-93 266
Msa0100740 MtrunA17_Chr1g0148951 100.000 134 0 0 1 134 1 134 1.02e-93 266
Msa0100740 MtrunA17_Chr1g0184901 86.567 134 18 0 1 134 1 134 1.96e-73 215
Msa0100740 MtrunA17_Chr1g0211651 81.250 128 24 0 7 134 4 131 2.88e-71 209
Msa0100740 MtrunA17_Chr4g0024701 66.418 134 25 1 1 134 1 114 6.90e-47 147
Msa0100740 MtrunA17_Chr2g0319191 64.545 110 37 2 24 132 14 122 1.42e-40 132
Msa0100740 MtrunA17_Chr2g0319181 64.545 110 37 2 24 132 14 122 1.91e-40 131
Msa0100740 MtrunA17_Chr7g0268831 58.333 132 47 4 1 130 1 126 2.47e-40 131
Msa0100740 MtrunA17_Chr7g0273351 58.197 122 49 2 10 130 3 123 8.09e-40 130
Msa0100740 MtrunA17_Chr7g0273331 58.197 122 49 2 10 130 59 179 9.14e-39 129
Msa0100740 MtrunA17_Chr7g0259151 61.682 107 39 2 25 130 21 126 2.97e-38 126
Msa0100740 MtrunA17_Chr7g0272611 55.652 115 49 2 19 132 19 132 7.29e-37 123
Msa0100740 MtrunA17_Chr4g0031041 59.292 113 44 2 23 134 15 126 4.29e-36 121
Msa0100740 MtrunA17_Chr2g0327951 59.292 113 44 2 23 134 56 167 8.62e-36 121
Msa0100740 MtrunA17_Chr4g0035621 61.111 108 40 2 27 133 25 131 4.35e-35 118
Msa0100740 MtrunA17_Chr8g0379311 60.550 109 41 2 27 134 25 132 4.84e-35 118
Msa0100740 MtrunA17_Chr4g0032301 59.633 109 42 2 27 134 25 132 5.44e-35 118
Msa0100740 MtrunA17_Chr4g0031001 59.633 109 42 2 27 134 25 132 6.61e-35 118
Msa0100740 MtrunA17_Chr4g0031651 59.633 109 42 2 27 134 25 132 6.76e-35 118
Msa0100740 MtrunA17_Chr2g0327931 60.185 108 41 2 27 133 24 130 8.79e-35 118
Msa0100740 MtrunA17_Chr7g0273341 53.448 116 40 5 19 132 50 153 3.35e-28 101
Msa0100740 MtrunA17_Chr4g0031031 62.687 67 24 1 55 120 17 83 3.79e-20 79.3
Msa0100740 MtrunA17_Chr6g0449661 45.283 106 47 4 27 130 86 182 6.63e-19 78.6
Msa0100740 MtrunA17_Chr3g0119971 44.340 106 48 4 27 130 81 177 1.70e-18 77.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0100740 AT1G52740.1 88.060 134 16 0 1 134 1 134 5.27e-76 222
Msa0100740 AT3G54560.1 84.559 136 19 1 1 134 1 136 7.75e-72 211
Msa0100740 AT3G54560.2 84.559 136 19 1 1 134 1 136 7.75e-72 211
Msa0100740 AT2G38810.1 81.618 136 23 1 1 134 1 136 1.01e-71 211
Msa0100740 AT2G38810.4 81.618 136 23 1 1 134 1 136 1.01e-71 211
Msa0100740 AT2G38810.3 81.618 136 23 1 1 134 1 136 1.01e-71 211
Msa0100740 AT2G38810.2 81.618 136 23 1 1 134 1 136 1.01e-71 211
Msa0100740 AT4G13570.1 66.667 111 33 1 18 124 8 118 3.28e-45 143
Msa0100740 AT4G13570.2 75.556 90 22 0 35 124 35 124 3.59e-44 141
Msa0100740 AT4G27230.2 64.545 110 37 2 24 132 14 122 2.42e-40 131
Msa0100740 AT4G27230.1 64.545 110 37 2 24 132 14 122 2.42e-40 131
Msa0100740 AT5G54640.1 64.545 110 37 2 24 132 14 122 2.45e-40 131
Msa0100740 AT3G20670.1 65.741 108 35 2 24 130 14 120 6.89e-40 130
Msa0100740 AT1G08880.1 64.762 105 35 2 25 128 21 124 1.01e-39 130
Msa0100740 AT1G51060.1 63.636 110 38 2 24 132 14 122 1.11e-39 130
Msa0100740 AT1G54690.1 63.810 105 36 2 25 128 21 124 2.89e-39 129
Msa0100740 AT5G02560.1 61.947 113 41 2 23 134 21 132 1.19e-38 128
Msa0100740 AT5G27670.1 60.870 115 43 2 19 132 18 131 4.54e-37 124
Msa0100740 AT5G59870.1 61.261 111 41 2 23 132 21 130 3.64e-36 121
Msa0100740 AT5G02560.2 51.095 137 41 3 23 134 21 156 3.79e-33 115

Find 55 sgRNAs with CRISPR-Local

Find 227 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTTGTCTTTGAGGTTTGC+TGG 0.259581 1_3:+7172585 None:intergenic
TCTTCTTGTCCTTGTCTTTG+AGG 0.316058 1_3:+7172577 None:intergenic
TTCCTCAAGAGCTGGTCTTC+AGG 0.343744 1_3:-7172541 Msa0100740:intron
TATGAACATTCATTCCTTTG+AGG 0.376752 1_3:+7169338 None:intergenic
GGTGATAACAACTTTATTTG+TGG 0.407928 1_3:-7169265 Msa0100740:three_prime_UTR
CCTCTGCAGTTAAATATTCC+AGG 0.413090 1_3:+7169529 None:intergenic
GAACTGTTTGAACTGATTTG+AGG 0.432017 1_3:-7169064 Msa0100740:three_prime_UTR
CAATGGCACATGGAAGAGTT+GGG 0.442531 1_3:-7169581 Msa0100740:CDS
AGTTTATTCTGCCGCTATCC+TGG 0.454001 1_3:-7169547 Msa0100740:CDS
ACAATGGCACATGGAAGAGT+TGG 0.476378 1_3:-7169582 Msa0100740:CDS
GGAGCGAAGGGTTTGACAAC+CGG 0.477894 1_3:-7172615 Msa0100740:CDS
ATATTTAACTGCAGAGGTGT+TGG 0.485770 1_3:-7169523 Msa0100740:CDS
CTCATCAAAGGAACAATAGC+TGG 0.487626 1_3:-7169405 Msa0100740:CDS
TTGAAGTGCGAAAACATGTC+GGG 0.497395 1_3:-7172642 Msa0100740:exon
GTTTGAACTGATTTGAGGAA+AGG 0.499655 1_3:-7169059 Msa0100740:three_prime_UTR
ATAAGAGACTTGTGGATATG+AGG 0.507095 1_3:+7169369 None:intergenic
GGATAATTTGCTCCTTGCGT+TGG 0.524291 1_3:-7169244 Msa0100740:three_prime_UTR
AGACGATGGATACGTCCGAC+AGG 0.539450 1_3:+7169618 None:intergenic
AACTGCAGAGGTGTTGGAGT+TGG 0.540859 1_3:-7169517 Msa0100740:CDS
AGCTCTTGAGGAACGAGATG+TGG 0.542232 1_3:+7172551 None:intergenic
AACCTGAAGACCAGCTCTTG+AGG 0.543571 1_3:+7172539 None:intergenic
ACATCTCGTTCCTCAAGAGC+TGG 0.546311 1_3:-7172549 Msa0100740:CDS
GCAGAGGTGTTGGAGTTGGC+TGG 0.558822 1_3:-7169513 Msa0100740:CDS
CAATGCAAGCAAGGATCTGA+AGG 0.565081 1_3:-7169490 Msa0100740:CDS
CATATGTCTAGGATTAATGT+TGG 0.566765 1_3:-7169120 Msa0100740:three_prime_UTR
TGCGAAAACATGTCGGGGAA+AGG 0.567757 1_3:-7172636 Msa0100740:exon
GAACTTGACACTCTCATCAA+AGG 0.571379 1_3:-7169417 Msa0100740:CDS
GTTGGCTGGCAATGCAAGCA+AGG 0.571379 1_3:-7169499 Msa0100740:CDS
AGTTTCAGATAATCTAAAGA+AGG 0.572907 1_3:+7169203 None:intergenic
ACTTGTTGATAAGAGACTTG+TGG 0.572936 1_3:+7169361 None:intergenic
TGTCAAGTTCTTCGTCTCCA+CGG 0.583078 1_3:+7169430 None:intergenic
ATAGCAAGCTGTAGATGTCT+CGG 0.584334 1_3:+7169453 None:intergenic
TCTTATCAACAAGTCCTCAA+AGG 0.584732 1_3:-7169352 Msa0100740:CDS
CATCTACAGCTTGCTATCCG+TGG 0.586408 1_3:-7169447 Msa0100740:CDS
TCCATCGTCTTCTGAAGTCA+AGG 0.589423 1_3:-7169605 Msa0100740:CDS
TCAGATAATCTAAAGAAGGA+TGG 0.590080 1_3:+7169207 None:intergenic
TTTGAAGTGCGAAAACATGT+CGG 0.591882 1_3:-7172643 Msa0100740:exon
GTATGGTACTGCATATGTCT+AGG 0.597951 1_3:-7169131 Msa0100740:three_prime_UTR
CATGTCGGGGAAAGGAGCGA+AGG 0.599837 1_3:-7172628 Msa0100740:CDS
GCTCTTGAGGAACGAGATGT+GGG 0.607406 1_3:+7172552 None:intergenic
AAAGGAACAATAGCTGGTGG+TGG 0.608922 1_3:-7169399 Msa0100740:CDS
CCTGGAATATTTAACTGCAG+AGG 0.615265 1_3:-7169529 Msa0100740:CDS
AAGTCAAGGACAATGGCACA+TGG 0.622887 1_3:-7169591 Msa0100740:CDS
ATGTCGGGGAAAGGAGCGAA+GGG 0.624226 1_3:-7172627 Msa0100740:CDS
CAATCAATCAAACCAACGCA+AGG 0.626065 1_3:+7169232 None:intergenic
GACGATGGATACGTCCGACA+GGG 0.626692 1_3:+7169619 None:intergenic
TTCTACATACAGTTCCCTGT+CGG 0.628096 1_3:-7169633 Msa0100740:intron
ACCAGCAAACCTCAAAGACA+AGG 0.637885 1_3:-7172586 Msa0100740:CDS
TAATTCGTTCTAATTAACGC+AGG 0.639924 1_3:-7169317 Msa0100740:three_prime_UTR
AATGGCACATGGAAGAGTTG+GGG 0.645846 1_3:-7169580 Msa0100740:CDS
TGAAGTGCGAAAACATGTCG+GGG 0.649052 1_3:-7172641 Msa0100740:exon
TCTTCTGAAGTCAAGGACAA+TGG 0.655563 1_3:-7169598 Msa0100740:CDS
ATCAAAGGAACAATAGCTGG+TGG 0.661257 1_3:-7169402 Msa0100740:CDS
TCCTTGACTTCAGAAGACGA+TGG 0.668973 1_3:+7169604 None:intergenic
AGTTAAATATTCCAGGATAG+CGG 0.686777 1_3:+7169536 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATAAACATAAAAAATATTT+TGG - chr1_3:7170719-7170738 Msa0100740:intron 10.0%
!!! TTTTTATCAAGATTCAAATT+TGG - chr1_3:7169533-7169552 Msa0100740:CDS 15.0%
!!! TTTTATCAAGATTCAAATTT+GGG - chr1_3:7169534-7169553 Msa0100740:CDS 15.0%
!!! TAAAGGGAAATAATAATTTT+AGG + chr1_3:7170350-7170369 None:intergenic 15.0%
!! CTAATACATATAAGATTAAA+GGG + chr1_3:7170366-7170385 None:intergenic 15.0%
!! TTGATGAAATTCAATAAATA+AGG - chr1_3:7170970-7170989 Msa0100740:intron 15.0%
!! TGATGAAATTCAATAAATAA+GGG - chr1_3:7170971-7170990 Msa0100740:intron 15.0%
!!! AATAAATAAGGGTATAATAA+TGG - chr1_3:7170982-7171001 Msa0100740:intron 15.0%
!! AGAAAAATTTATTATTGCAT+TGG + chr1_3:7171362-7171381 None:intergenic 15.0%
!!! TAGTTTTAAAAGTAATACTT+TGG + chr1_3:7171425-7171444 None:intergenic 15.0%
!! AAATTATCCTTATTAACTAT+TGG + chr1_3:7171449-7171468 None:intergenic 15.0%
!! AATAGTTAATAAGGATAATT+TGG - chr1_3:7171448-7171467 Msa0100740:intron 15.0%
!! AATGATTAAAATAAAGAGAA+TGG + chr1_3:7171482-7171501 None:intergenic 15.0%
!!! AGTATTATTTTATAACTGTT+TGG - chr1_3:7171558-7171577 Msa0100740:intron 15.0%
!!! TTTTGTTAAAAAATTGTGAC+AGG - chr1_3:7169422-7169441 Msa0100740:CDS 20.0%
!!! TTTTTATCTAAGATGAAGAA+TGG - chr1_3:7169494-7169513 Msa0100740:CDS 20.0%
!!! AATTACCTTGTTTTGTTTTA+TGG - chr1_3:7169727-7169746 Msa0100740:intron 20.0%
!!! TTGAATTTTATTGAACAACT+TGG - chr1_3:7169900-7169919 Msa0100740:intron 20.0%
!!! TCAAATTAGTTTCAGAATTA+TGG - chr1_3:7169953-7169972 Msa0100740:intron 20.0%
!! GCTAATACATATAAGATTAA+AGG + chr1_3:7170367-7170386 None:intergenic 20.0%
!! ACGTATAATATATATACAAG+AGG + chr1_3:7170590-7170609 None:intergenic 20.0%
!! AATAATAATAAATGCTGCAT+TGG - chr1_3:7171007-7171026 Msa0100740:intron 20.0%
!! AAACTAACCAATAGTTAATA+AGG - chr1_3:7171439-7171458 Msa0100740:intron 20.0%
!!! GATGGATTTTAATGTAATTT+CGG - chr1_3:7172472-7172491 Msa0100740:intron 20.0%
!!! AACTTTTTTCTGTTTTGATA+TGG - chr1_3:7172574-7172593 Msa0100740:CDS 20.0%
! AAAAAATTGTGACAGGATAT+TGG - chr1_3:7169429-7169448 Msa0100740:CDS 25.0%
! AAAAATTGTGACAGGATATT+GGG - chr1_3:7169430-7169449 Msa0100740:CDS 25.0%
! GAAAATCACTATATAGACAA+CGG + chr1_3:7169605-7169624 None:intergenic 25.0%
! CAGTTAAGCAAATTGAAAAT+GGG + chr1_3:7169654-7169673 None:intergenic 25.0%
! TCAGTTAAGCAAATTGAAAA+TGG + chr1_3:7169655-7169674 None:intergenic 25.0%
! ATAAGCCATAAAACAAAACA+AGG + chr1_3:7169735-7169754 None:intergenic 25.0%
! TTTCCATTTGCAAATTTCAT+GGG + chr1_3:7169865-7169884 None:intergenic 25.0%
!! TTTTCCATTTGCAAATTTCA+TGG + chr1_3:7169866-7169885 None:intergenic 25.0%
! ATTAGATAAAAGTTAGGAGA+AGG + chr1_3:7169927-7169946 None:intergenic 25.0%
!! CCTAACTTTTATCTAATCTA+CGG - chr1_3:7169930-7169949 Msa0100740:intron 25.0%
! TATTAATTATCTGTGTGTAG+GGG + chr1_3:7170033-7170052 None:intergenic 25.0%
! CTATTAATTATCTGTGTGTA+GGG + chr1_3:7170034-7170053 None:intergenic 25.0%
! ACTATTAATTATCTGTGTGT+AGG + chr1_3:7170035-7170054 None:intergenic 25.0%
!!! GGCTGTTTATTTTATTTCTT+TGG - chr1_3:7170192-7170211 Msa0100740:intron 25.0%
! AAAGGAAGACAATAAACTAA+AGG + chr1_3:7170253-7170272 None:intergenic 25.0%
!! TCTCTTTTCGAAAAAAGAAA+AGG + chr1_3:7170271-7170290 None:intergenic 25.0%
!!! GGGAAATAATAATTTTAGGA+GGG + chr1_3:7170346-7170365 None:intergenic 25.0%
!! AGGGAAATAATAATTTTAGG+AGG + chr1_3:7170347-7170366 None:intergenic 25.0%
! TATGTTTGTATATGTGAGTA+AGG - chr1_3:7170392-7170411 Msa0100740:intron 25.0%
! TGTAGTTATCACTTAATCTT+TGG - chr1_3:7170612-7170631 Msa0100740:intron 25.0%
! AGAATTTCTTAGTGATTCAT+TGG + chr1_3:7170793-7170812 None:intergenic 25.0%
! AAACGACAATAATTTAGAGA+CGG + chr1_3:7170838-7170857 None:intergenic 25.0%
!! CTCTAAATTATTGTCGTTTA+AGG - chr1_3:7170839-7170858 Msa0100740:intron 25.0%
!!! ATTGATTGTGTTGATTTCAA+TGG - chr1_3:7170887-7170906 Msa0100740:intron 25.0%
! CCACTAACTACAATTAATAA+GGG + chr1_3:7170939-7170958 None:intergenic 25.0%
! TCCACTAACTACAATTAATA+AGG + chr1_3:7170940-7170959 None:intergenic 25.0%
! GTAAATTATGTTGCATTTGT+TGG - chr1_3:7172050-7172069 Msa0100740:intron 25.0%
! AGTTTCAGATAATCTAAAGA+AGG + chr1_3:7172558-7172577 None:intergenic 25.0%
AAGAAAACGATGAAGAGAAA+GGG + chr1_3:7169264-7169283 None:intergenic 30.0%
CCAAAACAAAAGAGTGAAAA+AGG + chr1_3:7169320-7169339 None:intergenic 30.0%
!! CCTTTTTCACTCTTTTGTTT+TGG - chr1_3:7169317-7169336 Msa0100740:three_prime_UTR 30.0%
AATTTCATGGGTGTAAATGT+TGG + chr1_3:7169853-7169872 None:intergenic 30.0%
CCGTAGATTAGATAAAAGTT+AGG + chr1_3:7169933-7169952 None:intergenic 30.0%
TTAGTTTCAGAATTATGGCA+CGG - chr1_3:7169958-7169977 Msa0100740:intron 30.0%
TTGAATATGTTCACATGTGT+CGG - chr1_3:7170072-7170091 Msa0100740:intron 30.0%
! TTGGACTTTTAATAGAGACT+AGG - chr1_3:7170211-7170230 Msa0100740:intron 30.0%
GTATTAGAGAATGTGTTCAA+AGG + chr1_3:7170431-7170450 None:intergenic 30.0%
TCTAATACTCACTCTCTTAT+TGG - chr1_3:7170443-7170462 Msa0100740:intron 30.0%
ATATATACAAGAGGAATGCT+AGG + chr1_3:7170581-7170600 None:intergenic 30.0%
AGTTATCACTTAATCTTTGG+TGG - chr1_3:7170615-7170634 Msa0100740:intron 30.0%
TGCGAAAGAATACAAACAAA+AGG + chr1_3:7170701-7170720 None:intergenic 30.0%
!!! TGTTTTATTTGTCAAGACCA+AGG + chr1_3:7170759-7170778 None:intergenic 30.0%
! TGGTCTTGACAAATAAAACA+TGG - chr1_3:7170759-7170778 Msa0100740:intron 30.0%
GGTCTTGACAAATAAAACAT+GGG - chr1_3:7170760-7170779 Msa0100740:intron 30.0%
CCCTTATTAATTGTAGTTAG+TGG - chr1_3:7170936-7170955 Msa0100740:intron 30.0%
AAGAGACTATTATTGTGAGA+CGG - chr1_3:7171073-7171092 Msa0100740:intron 30.0%
CTTGTGTGGAAAAATTATCT+TGG - chr1_3:7171129-7171148 Msa0100740:intron 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG + chr1_3:7171530-7171549 None:intergenic 30.0%
!! AAACGACACTCATTTTGAAA+CGG - chr1_3:7171531-7171550 Msa0100740:intron 30.0%
!!! AGCTTGAATGGTTTTTTGTA+GGG + chr1_3:7171586-7171605 None:intergenic 30.0%
! TGATTATTTCCTTTTGCAAG+CGG - chr1_3:7171947-7171966 Msa0100740:intron 30.0%
AATAATTAACCGCTTGCAAA+AGG + chr1_3:7171959-7171978 None:intergenic 30.0%
!! ATTTTAGCATGCTTAGAATG+TGG + chr1_3:7172017-7172036 None:intergenic 30.0%
ATTTATCCCACATCATCATA+AGG - chr1_3:7172083-7172102 Msa0100740:intron 30.0%
ATGTAGAAAGATGTTCATGA+TGG + chr1_3:7172113-7172132 None:intergenic 30.0%
AGTTAAATATTCCAGGATAG+CGG + chr1_3:7172225-7172244 None:intergenic 30.0%
TATGAACATTCATTCCTTTG+AGG + chr1_3:7172423-7172442 None:intergenic 30.0%
TAATTCGTTCTAATTAACGC+AGG - chr1_3:7172441-7172460 Msa0100740:intron 30.0%
TTAACGCAGGAAAAAAAAGA+TGG - chr1_3:7172454-7172473 Msa0100740:intron 30.0%
! GGTGATAACAACTTTATTTG+TGG - chr1_3:7172493-7172512 Msa0100740:intron 30.0%
TCAGATAATCTAAAGAAGGA+TGG + chr1_3:7172554-7172573 None:intergenic 30.0%
!! ACATTCTCACTTTTGTTGTA+TGG - chr1_3:7172610-7172629 Msa0100740:CDS 30.0%
! CATATGTCTAGGATTAATGT+TGG - chr1_3:7172638-7172657 Msa0100740:exon 30.0%
! TTTGAAGTGCGAAAACATGT+CGG - chr1_3:7169115-7169134 Msa0100740:three_prime_UTR 35.0%
CAAGAAAACGATGAAGAGAA+AGG + chr1_3:7169265-7169284 None:intergenic 35.0%
GATTTCTTGTGTCATGTTGA+TGG - chr1_3:7169673-7169692 Msa0100740:intron 35.0%
ACACCCATGAAATTTGCAAA+TGG - chr1_3:7169859-7169878 Msa0100740:intron 35.0%
ACGCCTTTAATCTTAAGTGT+TGG - chr1_3:7170154-7170173 Msa0100740:intron 35.0%
GCACCAACACTTAAGATTAA+AGG + chr1_3:7170160-7170179 None:intergenic 35.0%
!! TGTTGGTGCTACATTGTTTA+TGG - chr1_3:7170171-7170190 Msa0100740:intron 35.0%
CTAAAGGAGACTTCAAATCA+AGG + chr1_3:7170237-7170256 None:intergenic 35.0%
GAAAAGAGATGATGCATGAA+TGG - chr1_3:7170282-7170301 Msa0100740:intron 35.0%
!! TAATAATTTTAGGAGGGCCA+TGG + chr1_3:7170340-7170359 None:intergenic 35.0%
AAAATTGAACCCACACAAAG+TGG - chr1_3:7170493-7170512 Msa0100740:intron 35.0%
GACAATAATTTAGAGACGGA+GGG + chr1_3:7170834-7170853 None:intergenic 35.0%
! AAATGCTAACAAGTCTTGTG+TGG - chr1_3:7171115-7171134 Msa0100740:intron 35.0%
! AGACTTTTTATCAGCCCTTA+GGG + chr1_3:7171247-7171266 None:intergenic 35.0%
! AAGACTTTTTATCAGCCCTT+AGG + chr1_3:7171248-7171267 None:intergenic 35.0%
! GGCTGATAAAAAGTCTTATG+AGG - chr1_3:7171251-7171270 Msa0100740:intron 35.0%
! GTAGTGTGCAGAGTATTAAT+TGG + chr1_3:7171400-7171419 None:intergenic 35.0%
!!! CTTGAATGGTTTTTTGTAGG+GGG + chr1_3:7171584-7171603 None:intergenic 35.0%
!!! GCTTGAATGGTTTTTTGTAG+GGG + chr1_3:7171585-7171604 None:intergenic 35.0%
!!! GAGCTTGAATGGTTTTTTGT+AGG + chr1_3:7171587-7171606 None:intergenic 35.0%
! TACATTTTCCTTCTCGCTTT+TGG - chr1_3:7171758-7171777 Msa0100740:intron 35.0%
TTAGTAATCCAAAAGCGAGA+AGG + chr1_3:7171769-7171788 None:intergenic 35.0%
! CAAAAAACCTTTGACTTACC+AGG + chr1_3:7171834-7171853 None:intergenic 35.0%
!! GCATGCTAAAATTTGTTGTC+TGG - chr1_3:7172025-7172044 Msa0100740:intron 35.0%
! GGAAAACCTTATGATGATGT+GGG + chr1_3:7172092-7172111 None:intergenic 35.0%
! TGGAAAACCTTATGATGATG+TGG + chr1_3:7172093-7172112 None:intergenic 35.0%
! ATATTTAACTGCAGAGGTGT+TGG - chr1_3:7172235-7172254 Msa0100740:intron 35.0%
ATAAGAGACTTGTGGATATG+AGG + chr1_3:7172392-7172411 None:intergenic 35.0%
! ACTTGTTGATAAGAGACTTG+TGG + chr1_3:7172400-7172419 None:intergenic 35.0%
TCTTATCAACAAGTCCTCAA+AGG - chr1_3:7172406-7172425 Msa0100740:intron 35.0%
!! GAACTGTTTGAACTGATTTG+AGG - chr1_3:7172694-7172713 Msa0100740:five_prime_UTR 35.0%
!! GTTTGAACTGATTTGAGGAA+AGG - chr1_3:7172699-7172718 Msa0100740:five_prime_UTR 35.0%
!!! AGAGAGAGATTTGGCTTTTG+AGG + chr1_3:7169064-7169083 None:intergenic 40.0%
TTGAAGTGCGAAAACATGTC+GGG - chr1_3:7169116-7169135 Msa0100740:three_prime_UTR 40.0%
TCTTCTTGTCCTTGTCTTTG+AGG + chr1_3:7169184-7169203 None:intergenic 40.0%
GATGAAGAGAAAGGGTAAGA+GGG + chr1_3:7169256-7169275 None:intergenic 40.0%
!! TGTCATGTTGATGGTGTACA+TGG - chr1_3:7169682-7169701 Msa0100740:intron 40.0%
! GTATCTAGGACCTTGAGTTA+GGG - chr1_3:7169784-7169803 Msa0100740:intron 40.0%
AATTCGCCTCATGAAACTGT+AGG - chr1_3:7169824-7169843 Msa0100740:intron 40.0%
TAATTATCTGTGTGTAGGGG+CGG + chr1_3:7170030-7170049 None:intergenic 40.0%
TACCAACACATGTTTCACTC+CGG - chr1_3:7170129-7170148 Msa0100740:intron 40.0%
!! CTTAAGATTAAAGGCGTCTC+CGG + chr1_3:7170151-7170170 None:intergenic 40.0%
CGACAATAATTTAGAGACGG+AGG + chr1_3:7170835-7170854 None:intergenic 40.0%
! TGTCGTTTAAGGTTTGTGCA+CGG - chr1_3:7170850-7170869 Msa0100740:intron 40.0%
AGGTTTGTGCACGGTTATTA+AGG - chr1_3:7170859-7170878 Msa0100740:intron 40.0%
AGACTATTATTGTGAGACGG+AGG - chr1_3:7171076-7171095 Msa0100740:intron 40.0%
GACTATTATTGTGAGACGGA+GGG - chr1_3:7171077-7171096 Msa0100740:intron 40.0%
TCTTCTTAACAAGTGCCCTA+AGG - chr1_3:7171229-7171248 Msa0100740:intron 40.0%
CTTCTTAACAAGTGCCCTAA+GGG - chr1_3:7171230-7171249 Msa0100740:intron 40.0%
!! AAGCGACACTCATTTTGAAG+CGG + chr1_3:7171296-7171315 None:intergenic 40.0%
! GTGTGCAGAGTATTAATTGG+AGG + chr1_3:7171397-7171416 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - chr1_3:7171535-7171554 Msa0100740:intron 40.0%
AAGTAGCAGCCTGACATAAA+AGG - chr1_3:7171805-7171824 Msa0100740:intron 40.0%
CTGTGAGTGACTAGTATCTT+TGG - chr1_3:7171913-7171932 Msa0100740:intron 40.0%
TTCTACATACAGTTCCCTGT+CGG - chr1_3:7172125-7172144 Msa0100740:intron 40.0%
!! TCTTCTGAAGTCAAGGACAA+TGG - chr1_3:7172160-7172179 Msa0100740:intron 40.0%
CCTCTGCAGTTAAATATTCC+AGG + chr1_3:7172232-7172251 None:intergenic 40.0%
CCTGGAATATTTAACTGCAG+AGG - chr1_3:7172229-7172248 Msa0100740:intron 40.0%
ATAGCAAGCTGTAGATGTCT+CGG + chr1_3:7172308-7172327 None:intergenic 40.0%
GAACTTGACACTCTCATCAA+AGG - chr1_3:7172341-7172360 Msa0100740:intron 40.0%
CTCATCAAAGGAACAATAGC+TGG - chr1_3:7172353-7172372 Msa0100740:intron 40.0%
ATCAAAGGAACAATAGCTGG+TGG - chr1_3:7172356-7172375 Msa0100740:intron 40.0%
CAATCAATCAAACCAACGCA+AGG + chr1_3:7172529-7172548 None:intergenic 40.0%
GTATGGTACTGCATATGTCT+AGG - chr1_3:7172627-7172646 Msa0100740:CDS 40.0%
GAGAGAGAGAGAGAGAGATT+TGG + chr1_3:7169073-7169092 None:intergenic 45.0%
TGAAGTGCGAAAACATGTCG+GGG - chr1_3:7169117-7169136 Msa0100740:three_prime_UTR 45.0%
!!! GAGGTTTGCTGGTGTTTTAC+CGG + chr1_3:7169165-7169184 None:intergenic 45.0%
ACCAGCAAACCTCAAAGACA+AGG - chr1_3:7169172-7169191 Msa0100740:three_prime_UTR 45.0%
!! TCCTTGTCTTTGAGGTTTGC+TGG + chr1_3:7169176-7169195 None:intergenic 45.0%
CGATGAAGAGAAAGGGTAAG+AGG + chr1_3:7169257-7169276 None:intergenic 45.0%
ACAAAGTCAGTGGCGTATCT+AGG - chr1_3:7169770-7169789 Msa0100740:intron 45.0%
! CGTATCTAGGACCTTGAGTT+AGG - chr1_3:7169783-7169802 Msa0100740:intron 45.0%
AAGTTTGCCTCCCTAACTCA+AGG + chr1_3:7169797-7169816 None:intergenic 45.0%
TGGACTCCTACAGTTTCATG+AGG + chr1_3:7169833-7169852 None:intergenic 45.0%
! TATGTTCACATGTGTCGGTG+TGG - chr1_3:7170077-7170096 Msa0100740:intron 45.0%
AGATGATGCATGAATGGCTG+TGG - chr1_3:7170288-7170307 Msa0100740:intron 45.0%
ATTGAACCCACACAAAGTGG+TGG - chr1_3:7170496-7170515 Msa0100740:intron 45.0%
TTGAACCCACACAAAGTGGT+GGG - chr1_3:7170497-7170516 Msa0100740:intron 45.0%
TATGTCCCACCACTTTGTGT+GGG + chr1_3:7170505-7170524 None:intergenic 45.0%
! CTCTCTAGCACTCACTCTTT+TGG + chr1_3:7170540-7170559 None:intergenic 45.0%
!! CTTAATCTTTGGTGGTGCAG+TGG - chr1_3:7170623-7170642 Msa0100740:intron 45.0%
!!! GCAGTGGTAATCCGCTTTTT+TGG - chr1_3:7170639-7170658 Msa0100740:intron 45.0%
CCTCATAGGAGCCAAAAAAG+CGG + chr1_3:7170653-7170672 None:intergenic 45.0%
ACTCGAGCTTCTATCCTCAT+AGG + chr1_3:7170667-7170686 None:intergenic 45.0%
TGGAGATGTGATTCGAACCT+TGG - chr1_3:7170739-7170758 Msa0100740:intron 45.0%
! GACGGAGGGAGTAGTATTTT+AGG - chr1_3:7171091-7171110 Msa0100740:intron 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - chr1_3:7171534-7171553 Msa0100740:intron 45.0%
TATCAGCGACAGAGCTTGAA+TGG + chr1_3:7171598-7171617 None:intergenic 45.0%
TTCAAGCTCTGTCGCTGATA+AGG - chr1_3:7171598-7171617 Msa0100740:intron 45.0%
!! TATGTCAGGCTGCTACTTTG+CGG + chr1_3:7171803-7171822 None:intergenic 45.0%
!! TCCATCGTCTTCTGAAGTCA+AGG - chr1_3:7172153-7172172 Msa0100740:intron 45.0%
TCCTTGACTTCAGAAGACGA+TGG + chr1_3:7172157-7172176 None:intergenic 45.0%
AAGTCAAGGACAATGGCACA+TGG - chr1_3:7172167-7172186 Msa0100740:intron 45.0%
ACAATGGCACATGGAAGAGT+TGG - chr1_3:7172176-7172195 Msa0100740:intron 45.0%
CAATGGCACATGGAAGAGTT+GGG - chr1_3:7172177-7172196 Msa0100740:intron 45.0%
AATGGCACATGGAAGAGTTG+GGG - chr1_3:7172178-7172197 Msa0100740:intron 45.0%
AGTTTATTCTGCCGCTATCC+TGG - chr1_3:7172211-7172230 Msa0100740:intron 45.0%
CAATGCAAGCAAGGATCTGA+AGG - chr1_3:7172268-7172287 Msa0100740:intron 45.0%
TGTCAAGTTCTTCGTCTCCA+CGG + chr1_3:7172331-7172350 None:intergenic 45.0%
AAAGGAACAATAGCTGGTGG+TGG - chr1_3:7172359-7172378 Msa0100740:intron 45.0%
!! GGATAATTTGCTCCTTGCGT+TGG - chr1_3:7172514-7172533 Msa0100740:intron 45.0%
TGCGAAAACATGTCGGGGAA+AGG - chr1_3:7169122-7169141 Msa0100740:three_prime_UTR 50.0%
GCTCTTGAGGAACGAGATGT+GGG + chr1_3:7169209-7169228 None:intergenic 50.0%
AGCTCTTGAGGAACGAGATG+TGG + chr1_3:7169210-7169229 None:intergenic 50.0%
ACATCTCGTTCCTCAAGAGC+TGG - chr1_3:7169209-7169228 Msa0100740:three_prime_UTR 50.0%
!! TTCCTCAAGAGCTGGTCTTC+AGG - chr1_3:7169217-7169236 Msa0100740:three_prime_UTR 50.0%
AACCTGAAGACCAGCTCTTG+AGG + chr1_3:7169222-7169241 None:intergenic 50.0%
GCGCACAAACACAAAGTCAG+TGG - chr1_3:7169760-7169779 Msa0100740:intron 50.0%
! TCTAGGACCTTGAGTTAGGG+AGG - chr1_3:7169787-7169806 Msa0100740:intron 50.0%
CTCCGGAGTGAAACATGTGT+TGG + chr1_3:7170134-7170153 None:intergenic 50.0%
TGATGCATGAATGGCTGTGG+CGG - chr1_3:7170291-7170310 Msa0100740:intron 50.0%
CGGATGGTAGAAGGGATAGA+GGG - chr1_3:7170311-7170330 Msa0100740:intron 50.0%
ATGGTAGAAGGGATAGAGGG+TGG - chr1_3:7170314-7170333 Msa0100740:intron 50.0%
GTATGTCCCACCACTTTGTG+TGG + chr1_3:7170506-7170525 None:intergenic 50.0%
!!! CCGCTTTTTTGGCTCCTATG+AGG - chr1_3:7170650-7170669 Msa0100740:intron 50.0%
TCTGTCGCTGATAAGGTGAG+CGG - chr1_3:7171605-7171624 Msa0100740:intron 50.0%
! ACCAGGCAGCCTTTTATGTC+AGG + chr1_3:7171817-7171836 None:intergenic 50.0%
AAGGCTGCCTGGTAAGTCAA+AGG - chr1_3:7171824-7171843 Msa0100740:intron 50.0%
TGCTTCAGCCACATGTGTCA+TGG - chr1_3:7171858-7171877 Msa0100740:intron 50.0%
TGCTGTAGCCATGACACATG+TGG + chr1_3:7171869-7171888 None:intergenic 50.0%
ACATGTGTCATGGCTACAGC+AGG - chr1_3:7171868-7171887 Msa0100740:intron 50.0%
!! AACTGCAGAGGTGTTGGAGT+TGG - chr1_3:7172241-7172260 Msa0100740:intron 50.0%
!! CATCTACAGCTTGCTATCCG+TGG - chr1_3:7172311-7172330 Msa0100740:intron 50.0%
ATGTCGGGGAAAGGAGCGAA+GGG - chr1_3:7169131-7169150 Msa0100740:three_prime_UTR 55.0%
GGAGCGAAGGGTTTGACAAC+CGG - chr1_3:7169143-7169162 Msa0100740:three_prime_UTR 55.0%
! CACATGTGTCGGTGTGGTGT+CGG - chr1_3:7170083-7170102 Msa0100740:intron 55.0%
! ACATGTGTCGGTGTGGTGTC+GGG - chr1_3:7170084-7170103 Msa0100740:intron 55.0%
GCGGATGGTAGAAGGGATAG+AGG - chr1_3:7170310-7170329 Msa0100740:intron 55.0%
GCCTGACATAAAAGGCTGCC+TGG - chr1_3:7171813-7171832 Msa0100740:intron 55.0%
GACGATGGATACGTCCGACA+GGG + chr1_3:7172142-7172161 None:intergenic 55.0%
AGACGATGGATACGTCCGAC+AGG + chr1_3:7172143-7172162 None:intergenic 55.0%
GTTGGCTGGCAATGCAAGCA+AGG - chr1_3:7172259-7172278 Msa0100740:intron 55.0%
CATGTCGGGGAAAGGAGCGA+AGG - chr1_3:7169130-7169149 Msa0100740:three_prime_UTR 60.0%
! GCATGAATGGCTGTGGCGGA+TGG - chr1_3:7170295-7170314 Msa0100740:intron 60.0%
!! TGGCTGTGGCGGATGGTAGA+AGG - chr1_3:7170302-7170321 Msa0100740:intron 60.0%
!! GGCTGTGGCGGATGGTAGAA+GGG - chr1_3:7170303-7170322 Msa0100740:intron 60.0%
GAAGGGATAGAGGGTGGCCA+TGG - chr1_3:7170320-7170339 Msa0100740:intron 60.0%
!! GCAGAGGTGTTGGAGTTGGC+TGG - chr1_3:7172245-7172264 Msa0100740:intron 60.0%
! TGTCGGTGTGGTGTCGGGCT+TGG - chr1_3:7170089-7170108 Msa0100740:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 7169056 7172724 7169056 ID=Msa0100740;Name=Msa0100740
chr1_3 mRNA 7169056 7172724 7169056 ID=Msa0100740-mRNA-1;Parent=Msa0100740;Name=Msa0100740-mRNA-1;_AED=0.27;_eAED=0.27;_QI=75|1|1|1|1|1|2|291|134
chr1_3 exon 7169056 7169643 7169056 ID=Msa0100740-mRNA-1:exon:2797;Parent=Msa0100740-mRNA-1
chr1_3 exon 7172542 7172724 7172542 ID=Msa0100740-mRNA-1:exon:2796;Parent=Msa0100740-mRNA-1
chr1_3 five_prime_UTR 7172650 7172724 7172650 ID=Msa0100740-mRNA-1:five_prime_utr;Parent=Msa0100740-mRNA-1
chr1_3 CDS 7172542 7172649 7172542 ID=Msa0100740-mRNA-1:cds;Parent=Msa0100740-mRNA-1
chr1_3 CDS 7169347 7169643 7169347 ID=Msa0100740-mRNA-1:cds;Parent=Msa0100740-mRNA-1
chr1_3 three_prime_UTR 7169056 7169346 7169056 ID=Msa0100740-mRNA-1:three_prime_utr;Parent=Msa0100740-mRNA-1
Gene Sequence

>Msa0100740

ATGTCGGGGAAAGGAGCGAAGGGTTTGACAACCGGTAAAACACCAGCAAACCTCAAAGACAAGGACAAGAAGAAACCCACATCTCGTTCCTCAAGAGCTGGTCTTCAGTTCCCTGTCGGACGTATCCATCGTCTTCTGAAGTCAAGGACAATGGCACATGGAAGAGTTGGGGCTACAGCTGCAGTTTATTCTGCCGCTATCCTGGAATATTTAACTGCAGAGGTGTTGGAGTTGGCTGGCAATGCAAGCAAGGATCTGAAGGTGAAGCGTATTACACCGAGACATCTACAGCTTGCTATCCGTGGAGACGAAGAACTTGACACTCTCATCAAAGGAACAATAGCTGGTGGTGGTGTTATTCCTCATATCCACAAGTCTCTTATCAACAAGTCCTCAAAGGAATGA

Protein sequence

>Msa0100740

MSGKGAKGLTTGKTPANLKDKDKKKPTSRSSRAGLQFPVGRIHRLLKSRTMAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE*