Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0027840 | XP_013468528.1 | 68.468 | 111 | 5 | 1 | 92 | 172 | 29 | 139 | 1.22e-40 | 144 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008200 | Msa0027840 | 0.809233 | 2.093953e-50 | -8.615850e-47 |
| Msa0027840 | Msa0030300 | 0.808138 | 3.588891e-50 | -8.615850e-47 |
| Msa0027840 | Msa0085960 | 0.807814 | 4.205658e-50 | -8.615850e-47 |
| Msa0027840 | Msa0106620 | 0.824259 | 8.893970e-54 | -8.615850e-47 |
| Msa0027840 | Msa0106710 | 0.838756 | 2.380582e-57 | -8.615850e-47 |
| Msa0027840 | Msa0123510 | 0.836438 | 9.359073e-57 | -8.615850e-47 |
| Msa0027840 | Msa0137990 | 0.802896 | 4.512548e-49 | -8.615850e-47 |
| Msa0027840 | Msa0168090 | 0.821385 | 4.153549e-53 | -8.615850e-47 |
| Msa0027840 | Msa0285330 | 0.805726 | 1.161553e-49 | -8.615850e-47 |
| Msa0027840 | Msa0326590 | 0.805784 | 1.129558e-49 | -8.615850e-47 |
| Msa0027840 | Msa0378970 | 0.806747 | 7.079980e-50 | -8.615850e-47 |
| Msa0027840 | Msa0397820 | 0.827387 | 1.609009e-54 | -8.615850e-47 |
| Msa0027840 | Msa0480780 | 0.806067 | 9.849718e-50 | -8.615850e-47 |
| Msa0027840 | Msa0532980 | 0.801347 | 9.399952e-49 | -8.615850e-47 |
| Msa0027840 | Msa0588090 | 0.817223 | 3.685385e-52 | -8.615850e-47 |
| Msa0027840 | Msa0610250 | 0.812492 | 4.126542e-51 | -8.615850e-47 |
| Msa0027840 | Msa0622790 | 0.820899 | 5.374051e-53 | -8.615850e-47 |
| Msa0027840 | Msa0628420 | 0.811316 | 7.441292e-51 | -8.615850e-47 |
| Msa0027840 | Msa0652690 | 0.807235 | 5.580205e-50 | -8.615850e-47 |
| Msa0027840 | Msa0673270 | 0.841220 | 5.422074e-58 | -8.615850e-47 |
| Msa0027840 | Msa0703440 | 0.804401 | 2.198944e-49 | -8.615850e-47 |
| Msa0027840 | Msa0846230 | 0.803054 | 4.186308e-49 | -8.615850e-47 |
| Msa0027840 | Msa0865030 | 0.806878 | 6.642788e-50 | -8.615850e-47 |
| Msa0027840 | Msa0945240 | 0.811376 | 7.221158e-51 | -8.615850e-47 |
| Msa0027840 | Msa0980540 | 0.819572 | 1.082629e-52 | -8.615850e-47 |
| Msa0027840 | Msa1178060 | 0.800686 | 1.282741e-48 | -8.615850e-47 |
| Msa0027840 | Msa1226470 | 0.801078 | 1.066825e-48 | -8.615850e-47 |
| Msa0027840 | Msa1315750 | 0.852762 | 3.732474e-61 | -8.615850e-47 |
| Msa0027840 | Msa1349520 | 0.823141 | 1.624969e-53 | -8.615850e-47 |
| Msa0027840 | Msa1359560 | 0.807885 | 4.062914e-50 | -8.615850e-47 |
| Msa0027840 | Msa1376200 | 0.803577 | 3.262392e-49 | -8.615850e-47 |
| Msa0027840 | Msa1413380 | 0.802516 | 5.407473e-49 | -8.615850e-47 |
| Msa0027840 | Msa1432480 | 0.818570 | 1.829802e-52 | -8.615850e-47 |
| Msa0027840 | Msa1463900 | 0.800255 | 1.570005e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0027840 | MtrunA17_Chr1g0184251 | 68.468 | 111 | 5 | 1 | 92 | 172 | 29 | 139 | 1.13e-44 | 144 |
| Msa0027840 | MtrunA17_Chr7g0261051 | 54.464 | 112 | 21 | 1 | 92 | 173 | 29 | 140 | 2.56e-34 | 118 |
| Msa0027840 | MtrunA17_Chr1g0186541 | 34.234 | 111 | 40 | 1 | 95 | 172 | 32 | 142 | 3.33e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0027840 | AT4G14420.1 | 45.370 | 108 | 29 | 1 | 95 | 172 | 32 | 139 | 5.01e-16 | 71.6 |
| Msa0027840 | AT1G04340.1 | 35.135 | 111 | 42 | 1 | 92 | 172 | 29 | 139 | 1.29e-15 | 70.9 |
| Msa0027840 | AT5G43460.2 | 35.043 | 117 | 44 | 2 | 87 | 172 | 20 | 135 | 1.47e-15 | 70.5 |
| Msa0027840 | AT5G43460.1 | 35.043 | 117 | 44 | 2 | 87 | 172 | 20 | 135 | 1.47e-15 | 70.5 |
Find 49 sgRNAs with CRISPR-Local
Find 221 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCACTCAGATTAAATTAT+TGG | 0.106768 | 1_1:-52441654 | Msa0027840:three_prime_UTR |
| GCCTTCTTTGGTTGTCTTCT+AGG | 0.155377 | 1_1:+52441848 | None:intergenic |
| AGTTGCTCACAGAATGTTTA+TGG | 0.162742 | 1_1:-52441386 | Msa0027840:three_prime_UTR |
| CAGAATGTTTATGGAGTAAT+TGG | 0.234474 | 1_1:-52441377 | Msa0027840:three_prime_UTR |
| TTTAATGCCTTCCATGAAAA+TGG | 0.240041 | 1_1:-52441419 | Msa0027840:three_prime_UTR |
| AACTTCAACTGTAATGAAAT+TGG | 0.280224 | 1_1:+52441491 | None:intergenic |
| CTCTCTTCAAAGAGTGGTCT+TGG | 0.310793 | 1_1:-52441786 | Msa0027840:three_prime_UTR |
| ATGAATGTTAGCACGGCTTT+AGG | 0.321521 | 1_1:-52441597 | Msa0027840:three_prime_UTR |
| GTAAGCAGAGAGAATGAAAA+TGG | 0.336820 | 1_1:+52444757 | None:intergenic |
| AGTGGTCTTGGGTTGTTTCC+CGG | 0.344816 | 1_1:-52441774 | Msa0027840:three_prime_UTR |
| AGATCTCCTTTGGTGACAAC+TGG | 0.347501 | 1_1:+52445007 | None:intergenic |
| ATGGCTTTCTCTTCCTTTCT+CGG | 0.374329 | 1_1:-52444797 | Msa0027840:CDS |
| TGAAAGCTCGAGATCTCCTT+TGG | 0.385683 | 1_1:+52444997 | None:intergenic |
| GAACGGATACAATGAAGAAC+CGG | 0.416490 | 1_1:+52441755 | None:intergenic |
| CTTTGGTTGTCTTCTAGGAA+TGG | 0.422045 | 1_1:+52441853 | None:intergenic |
| CTAAGAAGAAGAGGAAATCT+AGG | 0.425677 | 1_1:+52444853 | None:intergenic |
| CATTTCACTTAATTAGACTT+TGG | 0.431464 | 1_1:-52441466 | Msa0027840:three_prime_UTR |
| TCTCTTCAAAGAGTGGTCTT+GGG | 0.440582 | 1_1:-52441785 | Msa0027840:three_prime_UTR |
| GTTGAAAGCCAACTTGAGAA+TGG | 0.444032 | 1_1:+52442832 | None:intergenic |
| TGTGCAAAGGAATCAAGCTT+TGG | 0.445686 | 1_1:+52442861 | None:intergenic |
| CAAAGTCTAATTAAGTGAAA+TGG | 0.452918 | 1_1:+52441467 | None:intergenic |
| TTTCAAGTGGTGAAAACAAA+AGG | 0.457127 | 1_1:-52441547 | Msa0027840:three_prime_UTR |
| TTTCGACTTGGTATACTCTC+TGG | 0.460788 | 1_1:-52441718 | Msa0027840:three_prime_UTR |
| GGTTTCAGTGCTGTTGCAGA+AGG | 0.469228 | 1_1:+52442882 | None:intergenic |
| GAAAGAGAGAAAGAAGAGAA+AGG | 0.474091 | 1_1:+52444921 | None:intergenic |
| GAGAGACTAACATCAATCTC+TGG | 0.486838 | 1_1:+52442807 | None:intergenic |
| CGATCATCCAGGTTTCGACT+TGG | 0.499500 | 1_1:-52441730 | Msa0027840:three_prime_UTR |
| TAAACATTCTGTGAGCAACT+TGG | 0.505006 | 1_1:+52441389 | None:intergenic |
| TATCCGTTCTTCGATCATCC+AGG | 0.510967 | 1_1:-52441741 | Msa0027840:three_prime_UTR |
| CATCGAATCCATTCTCAAGT+TGG | 0.513513 | 1_1:-52442840 | Msa0027840:CDS |
| GAAGAGAACTCTTCCGAGAA+AGG | 0.515382 | 1_1:+52444784 | None:intergenic |
| TCCTAGAAGACAACCAAAGA+AGG | 0.517286 | 1_1:-52441849 | Msa0027840:exon |
| GAGTATACCAAGTCGAAACC+TGG | 0.519243 | 1_1:+52441723 | None:intergenic |
| TCTTTGTTGCTAAGAAGAAG+AGG | 0.535447 | 1_1:+52444844 | None:intergenic |
| TCTTCTTCTTAGCAACAAAG+AGG | 0.548813 | 1_1:-52444842 | Msa0027840:CDS |
| CTTAATTAGACTTTGGCCCA+AGG | 0.550656 | 1_1:-52441459 | Msa0027840:three_prime_UTR |
| TGCTAAACTTGTGTTTCAAG+TGG | 0.565849 | 1_1:-52441560 | Msa0027840:three_prime_UTR |
| GATCTCCTTTGGTGACAACT+GGG | 0.578357 | 1_1:+52445008 | None:intergenic |
| AAAGTAAAGAGGGATGATGA+TGG | 0.592777 | 1_1:+52444966 | None:intergenic |
| TAAGAAGAAGAGGAAATCTA+GGG | 0.602304 | 1_1:+52444854 | None:intergenic |
| TGGTGTGTTAAAATATAGAG+TGG | 0.607760 | 1_1:-52441357 | Msa0027840:three_prime_UTR |
| TCATGGAAGGCATTAAACAG+AGG | 0.617141 | 1_1:+52441425 | None:intergenic |
| AGAATGGATTCGATGTGCAA+AGG | 0.617931 | 1_1:+52442848 | None:intergenic |
| AGATGCCCAGTTGTCACCAA+AGG | 0.626337 | 1_1:-52445013 | None:intergenic |
| TACGACCTCTCTTCAAAGAG+TGG | 0.647311 | 1_1:-52441792 | Msa0027840:three_prime_UTR |
| CAAGACCACTCTTTGAAGAG+AGG | 0.649844 | 1_1:+52441787 | None:intergenic |
| TCTGAAGTTTAAGAACGCAA+AGG | 0.659301 | 1_1:+52441517 | None:intergenic |
| AACGGATACAATGAAGAACC+GGG | 0.660077 | 1_1:+52441756 | None:intergenic |
| AAACCTGGATGATCGAAGAA+CGG | 0.662085 | 1_1:+52441738 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAGGAAAATTAAA+CGG | + | chr1_1:52441610-52441629 | None:intergenic | 10.0% |
| !!! | ATATTTTTTGAAAGTAAAGA+GGG | + | chr1_1:52441347-52441366 | None:intergenic | 15.0% |
| !!! | AATATTTTTTGAAAGTAAAG+AGG | + | chr1_1:52441348-52441367 | None:intergenic | 15.0% |
| !!! | TGCTTTTGTTTAATTTTTTA+TGG | - | chr1_1:52442121-52442140 | Msa0027840:intron | 15.0% |
| !!! | TTTATGGTATTGAATTTTAT+AGG | - | chr1_1:52442137-52442156 | Msa0027840:intron | 15.0% |
| !! | CTATTCATATTATTAAACAA+CGG | - | chr1_1:52442342-52442361 | Msa0027840:intron | 15.0% |
| !! | TATTCATATTATTAAACAAC+GGG | - | chr1_1:52442343-52442362 | Msa0027840:intron | 15.0% |
| !! | AACAATTTACATATATTGTT+AGG | + | chr1_1:52442687-52442706 | None:intergenic | 15.0% |
| !! | TGAACAATTATAATATCAAA+TGG | + | chr1_1:52443266-52443285 | None:intergenic | 15.0% |
| !!! | TAATTTTTGATGAAATTGTA+TGG | + | chr1_1:52443717-52443736 | None:intergenic | 15.0% |
| !!! | ATCTAATATGTTTTTGTTTT+TGG | + | chr1_1:52444479-52444498 | None:intergenic | 15.0% |
| !! | CAAATAGAAATCAATAAAGA+AGG | + | chr1_1:52441585-52441604 | None:intergenic | 20.0% |
| !!! | ATGTTTTTTTCCTATAGATT+TGG | - | chr1_1:52441679-52441698 | Msa0027840:three_prime_UTR | 20.0% |
| !! | TCTAAACCTTAAAAACATAA+CGG | - | chr1_1:52441773-52441792 | Msa0027840:three_prime_UTR | 20.0% |
| !! | ATTGACTATATGGTTATTAT+CGG | - | chr1_1:52442287-52442306 | Msa0027840:intron | 20.0% |
| !!! | AAGTTTTCAATCACTTAAAA+TGG | + | chr1_1:52442875-52442894 | None:intergenic | 20.0% |
| !! | ATGCTTCTTATATAAAAGAA+TGG | + | chr1_1:52442953-52442972 | None:intergenic | 20.0% |
| !! | ATTCAGTAAGAATTAAAACA+TGG | + | chr1_1:52443091-52443110 | None:intergenic | 20.0% |
| !! | TTCACTAAAGCATAAAAATA+GGG | + | chr1_1:52443333-52443352 | None:intergenic | 20.0% |
| !! | CTATATAGATATAACGAATT+TGG | - | chr1_1:52443383-52443402 | Msa0027840:intron | 20.0% |
| !! | TTAAGTTAAATTGAAAAGAC+CGG | - | chr1_1:52443819-52443838 | Msa0027840:intron | 20.0% |
| !! | AATGCAAAAAAGTTAACAAA+TGG | + | chr1_1:52443866-52443885 | None:intergenic | 20.0% |
| !! | TTTCTGTTATTATGCTAAAT+TGG | - | chr1_1:52443886-52443905 | Msa0027840:intron | 20.0% |
| !! | ATAGAAAATAATGAGCAAAA+GGG | + | chr1_1:52443979-52443998 | None:intergenic | 20.0% |
| !! | AGATTAAACTTGTAATTACT+GGG | - | chr1_1:52444033-52444052 | Msa0027840:intron | 20.0% |
| !! | TTGTAAAAATCATAACGAAT+TGG | + | chr1_1:52444236-52444255 | None:intergenic | 20.0% |
| ! | TAGAAATCAATAAAGAAGGA+AGG | + | chr1_1:52441581-52441600 | None:intergenic | 25.0% |
| ! | ATTTCAACAACCAAATCTAT+AGG | + | chr1_1:52441692-52441711 | None:intergenic | 25.0% |
| !!! | AGTAAGAACATAACTTGTTA+AGG | + | chr1_1:52441808-52441827 | None:intergenic | 25.0% |
| ! | TTGTATGAATTGTAAATGCA+TGG | - | chr1_1:52442455-52442474 | Msa0027840:intron | 25.0% |
| ! | TAAACATAGTGTACTACAAT+TGG | + | chr1_1:52442562-52442581 | None:intergenic | 25.0% |
| ! | AAATATTGAATGTGATGTAG+GGG | + | chr1_1:52442614-52442633 | None:intergenic | 25.0% |
| ! | GAAATATTGAATGTGATGTA+GGG | + | chr1_1:52442615-52442634 | None:intergenic | 25.0% |
| ! | AGAAATATTGAATGTGATGT+AGG | + | chr1_1:52442616-52442635 | None:intergenic | 25.0% |
| ! | TATTGTTAGGAAATAGCTTA+TGG | + | chr1_1:52442674-52442693 | None:intergenic | 25.0% |
| ! | AAACATGCAATAACTACTTA+TGG | - | chr1_1:52442739-52442758 | Msa0027840:intron | 25.0% |
| ! | CTAATTATGGAAACAAAAGT+AGG | - | chr1_1:52442789-52442808 | Msa0027840:intron | 25.0% |
| ! | GTAGGTAGTATTTAATGAAA+TGG | - | chr1_1:52442807-52442826 | Msa0027840:intron | 25.0% |
| ! | AATGGAAAACACTGTATATA+TGG | - | chr1_1:52442825-52442844 | Msa0027840:CDS | 25.0% |
| ! | AACAATAGAAAAAGTTTACC+AGG | + | chr1_1:52442984-52443003 | None:intergenic | 25.0% |
| ! | TAATAGCACATTACATAGAA+CGG | + | chr1_1:52443055-52443074 | None:intergenic | 25.0% |
| ! | TTATTTAATAATCCTGACAG+CGG | - | chr1_1:52443294-52443313 | Msa0027840:intron | 25.0% |
| ! | TCACTAAAGCATAAAAATAG+GGG | + | chr1_1:52443332-52443351 | None:intergenic | 25.0% |
| ! | CTTCACTAAAGCATAAAAAT+AGG | + | chr1_1:52443334-52443353 | None:intergenic | 25.0% |
| ! | TATGGCACAAATATTTATTG+TGG | + | chr1_1:52443699-52443718 | None:intergenic | 25.0% |
| !!! | TTTCATTTTTTATGCCAGAT+CGG | + | chr1_1:52443912-52443931 | None:intergenic | 25.0% |
| ! | CATAGAAAATAATGAGCAAA+AGG | + | chr1_1:52443980-52443999 | None:intergenic | 25.0% |
| ! | ACATCACATCAGTTATATTA+GGG | + | chr1_1:52444011-52444030 | None:intergenic | 25.0% |
| ! | CAGATTAAACTTGTAATTAC+TGG | - | chr1_1:52444032-52444051 | Msa0027840:intron | 25.0% |
| ! | GATTAAACTTGTAATTACTG+GGG | - | chr1_1:52444034-52444053 | Msa0027840:intron | 25.0% |
| !! | TTTTTACAATTATGACAACG+AGG | - | chr1_1:52444247-52444266 | Msa0027840:intron | 25.0% |
| !! | ACTTTTCATCAAATTTACAC+AGG | - | chr1_1:52444286-52444305 | Msa0027840:intron | 25.0% |
| ! | CTTCACTCAGATTAAATTAT+TGG | - | chr1_1:52444646-52444665 | Msa0027840:intron | 25.0% |
| !! | TTTTTGTATGAATGTTAGCA+CGG | - | chr1_1:52444696-52444715 | Msa0027840:intron | 25.0% |
| ! | AACTTCAACTGTAATGAAAT+TGG | + | chr1_1:52444812-52444831 | None:intergenic | 25.0% |
| ! | CAAAGTCTAATTAAGTGAAA+TGG | + | chr1_1:52444836-52444855 | None:intergenic | 25.0% |
| ! | CATTTCACTTAATTAGACTT+TGG | - | chr1_1:52444834-52444853 | Msa0027840:CDS | 25.0% |
| TAAGAAGAAGAGGAAATCTA+GGG | + | chr1_1:52441449-52441468 | None:intergenic | 30.0% | |
| AACAACAACAACAACAACAA+TGG | - | chr1_1:52441481-52441500 | Msa0027840:three_prime_UTR | 30.0% | |
| !! | TTGGATCCGTTATGTTTTTA+AGG | + | chr1_1:52441782-52441801 | None:intergenic | 30.0% |
| !! | ACATAACTTGTTAAGGTTGT+TGG | + | chr1_1:52441801-52441820 | None:intergenic | 30.0% |
| TCTTACTCAGTTAAAGTGTA+AGG | - | chr1_1:52441821-52441840 | Msa0027840:three_prime_UTR | 30.0% | |
| ! | GCTTTACTCTAGTTTCAATT+GGG | - | chr1_1:52441981-52442000 | Msa0027840:intron | 30.0% |
| ! | AACTGTTGCAAATCTTTTGT+AGG | - | chr1_1:52442170-52442189 | Msa0027840:intron | 30.0% |
| TCAATACAGAAGAAAATGCA+AGG | + | chr1_1:52442204-52442223 | None:intergenic | 30.0% | |
| !! | AATAATTTTGCTATAGCTGC+TGG | - | chr1_1:52442229-52442248 | Msa0027840:intron | 30.0% |
| !! | ATTGTGCATGAATGTTTTTG+AGG | - | chr1_1:52442419-52442438 | Msa0027840:intron | 30.0% |
| TTGTAAATGCATGGATATGA+TGG | - | chr1_1:52442464-52442483 | Msa0027840:intron | 30.0% | |
| !! | AACTTTGTTATTAGGAACTG+AGG | + | chr1_1:52442500-52442519 | None:intergenic | 30.0% |
| TCCTAATAACAAAGTTGCTT+TGG | - | chr1_1:52442504-52442523 | Msa0027840:intron | 30.0% | |
| !! | ACCAAAGCAACTTTGTTATT+AGG | + | chr1_1:52442508-52442527 | None:intergenic | 30.0% |
| !! | CAATATTTCTAGCAGTCTAT+TGG | - | chr1_1:52442626-52442645 | Msa0027840:intron | 30.0% |
| TCCATTCAGAACACTAATTA+TGG | - | chr1_1:52442776-52442795 | Msa0027840:intron | 30.0% | |
| ! | TCCATAATTAGTGTTCTGAA+TGG | + | chr1_1:52442780-52442799 | None:intergenic | 30.0% |
| ! | TTGTTGAATTTTGAGCTAGA+AGG | - | chr1_1:52442999-52443018 | Msa0027840:intron | 30.0% |
| TAAGAATTAAAACATGGCCA+AGG | + | chr1_1:52443085-52443104 | None:intergenic | 30.0% | |
| GCTGTCAGGATTATTAAATA+AGG | + | chr1_1:52443295-52443314 | None:intergenic | 30.0% | |
| ! | ATATAACGAATTTGGAGTTG+AGG | - | chr1_1:52443391-52443410 | Msa0027840:intron | 30.0% |
| ! | TATAACGAATTTGGAGTTGA+GGG | - | chr1_1:52443392-52443411 | Msa0027840:intron | 30.0% |
| AGCTCTTGTACTTTATTGAA+GGG | + | chr1_1:52443762-52443781 | None:intergenic | 30.0% | |
| ! | TTATTATTCTTTTCCGAACG+AGG | + | chr1_1:52443788-52443807 | None:intergenic | 30.0% |
| TCGTTCGGAAAAGAATAATA+AGG | - | chr1_1:52443787-52443806 | Msa0027840:intron | 30.0% | |
| GGAAAAGAATAATAAGGACA+AGG | - | chr1_1:52443793-52443812 | Msa0027840:intron | 30.0% | |
| AAAGAATAATAAGGACAAGG+TGG | - | chr1_1:52443796-52443815 | Msa0027840:intron | 30.0% | |
| CACATCACATCAGTTATATT+AGG | + | chr1_1:52444012-52444031 | None:intergenic | 30.0% | |
| TCAATAAGCAATTGCAACAA+TGG | + | chr1_1:52444361-52444380 | None:intergenic | 30.0% | |
| !!! | GAGCTTTGTTGTTTTTCATT+GGG | - | chr1_1:52444413-52444432 | Msa0027840:intron | 30.0% |
| ! | TTTCAAGTGGTGAAAACAAA+AGG | - | chr1_1:52444753-52444772 | Msa0027840:CDS | 30.0% |
| AGAGGAAAAAAAAAAGCCTT+GGG | + | chr1_1:52444860-52444879 | None:intergenic | 30.0% | |
| TTTAATGCCTTCCATGAAAA+TGG | - | chr1_1:52444881-52444900 | Msa0027840:CDS | 30.0% | |
| CAGAATGTTTATGGAGTAAT+TGG | - | chr1_1:52444923-52444942 | Msa0027840:CDS | 30.0% | |
| TGGTGTGTTAAAATATAGAG+TGG | - | chr1_1:52444943-52444962 | Msa0027840:CDS | 30.0% | |
| AAAGTAAAGAGGGATGATGA+TGG | + | chr1_1:52441337-52441356 | None:intergenic | 35.0% | |
| GAAAGAGAGAAAGAAGAGAA+AGG | + | chr1_1:52441382-52441401 | None:intergenic | 35.0% | |
| CTAAGAAGAAGAGGAAATCT+AGG | + | chr1_1:52441450-52441469 | None:intergenic | 35.0% | |
| TCTTTGTTGCTAAGAAGAAG+AGG | + | chr1_1:52441459-52441478 | None:intergenic | 35.0% | |
| TCTTCTTCTTAGCAACAAAG+AGG | - | chr1_1:52441458-52441477 | Msa0027840:three_prime_UTR | 35.0% | |
| GTAAGCAGAGAGAATGAAAA+TGG | + | chr1_1:52441546-52441565 | None:intergenic | 35.0% | |
| ! | TCAAACGATTGATTTCGTTG+TGG | - | chr1_1:52441895-52441914 | Msa0027840:CDS | 35.0% |
| ! | CAAACGATTGATTTCGTTGT+GGG | - | chr1_1:52441896-52441915 | Msa0027840:CDS | 35.0% |
| ATATGCTCCTCTATAGGTAT+TGG | - | chr1_1:52441943-52441962 | Msa0027840:intron | 35.0% | |
| TATGCTCCTCTATAGGTATT+GGG | - | chr1_1:52441944-52441963 | Msa0027840:intron | 35.0% | |
| ! | AACTAGAGTAAAGCCTTGTA+TGG | + | chr1_1:52441975-52441994 | None:intergenic | 35.0% |
| ! | GGCTTTACTCTAGTTTCAAT+TGG | - | chr1_1:52441980-52441999 | Msa0027840:intron | 35.0% |
| !!! | GCTTTTTTCTACCGTAAACT+CGG | + | chr1_1:52442065-52442084 | None:intergenic | 35.0% |
| !!! | AGCGATTAAGTTGCTTTTCT+AGG | - | chr1_1:52442085-52442104 | Msa0027840:CDS | 35.0% |
| TGGTTATTCTTGTCTGGATA+TGG | - | chr1_1:52442249-52442268 | Msa0027840:intron | 35.0% | |
| AACGGGTAACATTGAATTCA+GGG | - | chr1_1:52442360-52442379 | Msa0027840:intron | 35.0% | |
| ! | ACTACAATTGGTTCATTGTG+CGG | + | chr1_1:52442550-52442569 | None:intergenic | 35.0% |
| AGAAGGCTTATGTCATTATG+TGG | - | chr1_1:52443016-52443035 | Msa0027840:intron | 35.0% | |
| ! | TGTGCTATTATACATTGCCT+TGG | - | chr1_1:52443065-52443084 | Msa0027840:intron | 35.0% |
| ! | ACTTTTGCAGACACAGATAA+TGG | + | chr1_1:52443183-52443202 | None:intergenic | 35.0% |
| TAGCATTGCACTTTATAAGC+TGG | - | chr1_1:52443212-52443231 | Msa0027840:intron | 35.0% | |
| ! | ATAACGAATTTGGAGTTGAG+GGG | - | chr1_1:52443393-52443412 | Msa0027840:intron | 35.0% |
| AAAAACATGATCTGTCCTTC+AGG | - | chr1_1:52443635-52443654 | Msa0027840:intron | 35.0% | |
| CAGCTCTTGTACTTTATTGA+AGG | + | chr1_1:52443763-52443782 | None:intergenic | 35.0% | |
| GAAAATAATGAGCAAAAGGG+AGG | + | chr1_1:52443976-52443995 | None:intergenic | 35.0% | |
| TCAGTTATATTAGGGAACAC+TGG | + | chr1_1:52444003-52444022 | None:intergenic | 35.0% | |
| AATATGAAAAGAACCCTCCA+AGG | + | chr1_1:52444076-52444095 | None:intergenic | 35.0% | |
| ! | TGGAGGGTTCTTTTCATATT+CGG | - | chr1_1:52444076-52444095 | Msa0027840:intron | 35.0% |
| TTCATATTCGGAAGCTCTTT+CGG | - | chr1_1:52444088-52444107 | Msa0027840:intron | 35.0% | |
| CTGAGCAAATGAGATGAATA+TGG | + | chr1_1:52444150-52444169 | None:intergenic | 35.0% | |
| !!! | GGAGCTTTGTTGTTTTTCAT+TGG | - | chr1_1:52444412-52444431 | Msa0027840:intron | 35.0% |
| !!! | TTTGTTTTTGGAGCCTTCTT+TGG | + | chr1_1:52444467-52444486 | None:intergenic | 35.0% |
| TGCTAAACTTGTGTTTCAAG+TGG | - | chr1_1:52444740-52444759 | Msa0027840:intron | 35.0% | |
| ! | TCTGAAGTTTAAGAACGCAA+AGG | + | chr1_1:52444786-52444805 | None:intergenic | 35.0% |
| CAGAGGAAAAAAAAAAGCCT+TGG | + | chr1_1:52444861-52444880 | None:intergenic | 35.0% | |
| TAAACATTCTGTGAGCAACT+TGG | + | chr1_1:52444914-52444933 | None:intergenic | 35.0% | |
| AGTTGCTCACAGAATGTTTA+TGG | - | chr1_1:52444914-52444933 | Msa0027840:CDS | 35.0% | |
| ATGGCTTTCTCTTCCTTTCT+CGG | - | chr1_1:52441503-52441522 | Msa0027840:three_prime_UTR | 40.0% | |
| AGAAGGAAGGAACTAACTCT+TGG | + | chr1_1:52441568-52441587 | None:intergenic | 40.0% | |
| TGCTCAAGTACCATCTAATC+CGG | + | chr1_1:52442037-52442056 | None:intergenic | 40.0% | |
| TCTTGTCTGGATATGGTATG+TGG | - | chr1_1:52442256-52442275 | Msa0027840:intron | 40.0% | |
| GGTTCGTTGGATTGACTATA+TGG | - | chr1_1:52442277-52442296 | Msa0027840:intron | 40.0% | |
| ! | TATCGGCTAACATGTTAGCT+TGG | - | chr1_1:52442304-52442323 | Msa0027840:intron | 40.0% |
| CAACGGGTAACATTGAATTC+AGG | - | chr1_1:52442359-52442378 | Msa0027840:intron | 40.0% | |
| ACGGGTAACATTGAATTCAG+GGG | - | chr1_1:52442361-52442380 | Msa0027840:intron | 40.0% | |
| !! | GTGCATGAATGTTTTTGAGG+AGG | - | chr1_1:52442422-52442441 | Msa0027840:intron | 40.0% |
| ATTAGGAACTGAGGAGTTTG+TGG | + | chr1_1:52442491-52442510 | None:intergenic | 40.0% | |
| ATTGAATGTGATGTAGGGGA+AGG | + | chr1_1:52442610-52442629 | None:intergenic | 40.0% | |
| ! | TAAGAAGCATGATGTTAGCC+TGG | - | chr1_1:52442963-52442982 | Msa0027840:intron | 40.0% |
| CACATTACATAGAACGGATG+AGG | + | chr1_1:52443049-52443068 | None:intergenic | 40.0% | |
| ! | TAACGAATTTGGAGTTGAGG+GGG | - | chr1_1:52443394-52443413 | Msa0027840:intron | 40.0% |
| TGTGCAAAGGAATCAAGCTT+TGG | + | chr1_1:52443442-52443461 | None:intergenic | 40.0% | |
| ! | AGAATGGATTCGATGTGCAA+AGG | + | chr1_1:52443455-52443474 | None:intergenic | 40.0% |
| CATCGAATCCATTCTCAAGT+TGG | - | chr1_1:52443460-52443479 | Msa0027840:intron | 40.0% | |
| GTTGAAAGCCAACTTGAGAA+TGG | + | chr1_1:52443471-52443490 | None:intergenic | 40.0% | |
| GAGAGACTAACATCAATCTC+TGG | + | chr1_1:52443496-52443515 | None:intergenic | 40.0% | |
| ACTAATCCAGTGTTACCTGA+AGG | + | chr1_1:52443653-52443672 | None:intergenic | 40.0% | |
| AAATGGACATGCAATCTCAC+TGG | + | chr1_1:52443849-52443868 | None:intergenic | 40.0% | |
| TTATGCTAAATTGGCCGATC+TGG | - | chr1_1:52443895-52443914 | Msa0027840:intron | 40.0% | |
| ATATCACTCCTTGCAGAACA+TGG | - | chr1_1:52444381-52444400 | Msa0027840:intron | 40.0% | |
| AAAAAGAGCCATGTTCTGCA+AGG | + | chr1_1:52444392-52444411 | None:intergenic | 40.0% | |
| ! | TTGCAGAACATGGCTCTTTT+TGG | - | chr1_1:52444391-52444410 | Msa0027840:intron | 40.0% |
| ! | CTTTGGTTGTCTTCTAGGAA+TGG | + | chr1_1:52444450-52444469 | None:intergenic | 40.0% |
| TCCTAGAAGACAACCAAAGA+AGG | - | chr1_1:52444451-52444470 | Msa0027840:intron | 40.0% | |
| TCTCTTCAAAGAGTGGTCTT+GGG | - | chr1_1:52444515-52444534 | Msa0027840:intron | 40.0% | |
| AACGGATACAATGAAGAACC+GGG | + | chr1_1:52444547-52444566 | None:intergenic | 40.0% | |
| GAACGGATACAATGAAGAAC+CGG | + | chr1_1:52444548-52444567 | None:intergenic | 40.0% | |
| AAACCTGGATGATCGAAGAA+CGG | + | chr1_1:52444565-52444584 | None:intergenic | 40.0% | |
| !! | TTTCGACTTGGTATACTCTC+TGG | - | chr1_1:52444582-52444601 | Msa0027840:intron | 40.0% |
| ATGAATGTTAGCACGGCTTT+AGG | - | chr1_1:52444703-52444722 | Msa0027840:intron | 40.0% | |
| CTTAATTAGACTTTGGCCCA+AGG | - | chr1_1:52444841-52444860 | Msa0027840:CDS | 40.0% | |
| !! | TCATGGAAGGCATTAAACAG+AGG | + | chr1_1:52444878-52444897 | None:intergenic | 40.0% |
| !! | AAAGCAGCCATTTTCATGGA+AGG | + | chr1_1:52444891-52444910 | None:intergenic | 40.0% |
| !! | TTGGAAAGCAGCCATTTTCA+TGG | + | chr1_1:52444895-52444914 | None:intergenic | 40.0% |
| ! | GATCTCCTTTGGTGACAACT+GGG | + | chr1_1:52441295-52441314 | None:intergenic | 45.0% |
| ! | AGATCTCCTTTGGTGACAAC+TGG | + | chr1_1:52441296-52441315 | None:intergenic | 45.0% |
| TGAAAGCTCGAGATCTCCTT+TGG | + | chr1_1:52441306-52441325 | None:intergenic | 45.0% | |
| GAAGAGAACTCTTCCGAGAA+AGG | + | chr1_1:52441519-52441538 | None:intergenic | 45.0% | |
| ATATCCCTAGTCTACACCAC+CGG | + | chr1_1:52441927-52441946 | None:intergenic | 45.0% | |
| CTAGGGATATGCTCCTCTAT+AGG | - | chr1_1:52441937-52441956 | Msa0027840:intron | 45.0% | |
| GACTGACCCAATACCTATAG+AGG | + | chr1_1:52441953-52441972 | None:intergenic | 45.0% | |
| GTATTGGGTCAGTCCATACA+AGG | - | chr1_1:52441959-52441978 | Msa0027840:intron | 45.0% | |
| GCTCAAGTACCATCTAATCC+GGG | + | chr1_1:52442036-52442055 | None:intergenic | 45.0% | |
| GGATTAGATGGTACTTGAGC+AGG | - | chr1_1:52442036-52442055 | Msa0027840:CDS | 45.0% | |
| TGAGCAGGATACCGAGTTTA+CGG | - | chr1_1:52442051-52442070 | Msa0027840:CDS | 45.0% | |
| ! | AGCTGCTGGTTATTCTTGTC+TGG | - | chr1_1:52442243-52442262 | Msa0027840:intron | 45.0% |
| GGATATGGTATGTGGTTCGT+TGG | - | chr1_1:52442264-52442283 | Msa0027840:intron | 45.0% | |
| GGTAACATTGAATTCAGGGG+TGG | - | chr1_1:52442364-52442383 | Msa0027840:intron | 45.0% | |
| TGCGGTGATTTAGTGTTAGC+GGG | + | chr1_1:52442532-52442551 | None:intergenic | 45.0% | |
| GTGCGGTGATTTAGTGTTAG+CGG | + | chr1_1:52442533-52442552 | None:intergenic | 45.0% | |
| GTCTATTGGTCAAACCACCT+TGG | - | chr1_1:52442640-52442659 | Msa0027840:intron | 45.0% | |
| ATCTGTCCTTCAGGTAACAC+TGG | - | chr1_1:52443644-52443663 | Msa0027840:intron | 45.0% | |
| ATGCAATCTCACTGGCATAC+CGG | + | chr1_1:52443841-52443860 | None:intergenic | 45.0% | |
| GCCTTCTTTGGTTGTCTTCT+AGG | + | chr1_1:52444455-52444474 | None:intergenic | 45.0% | |
| TACGACCTCTCTTCAAAGAG+TGG | - | chr1_1:52444508-52444527 | Msa0027840:intron | 45.0% | |
| ! | CAAGACCACTCTTTGAAGAG+AGG | + | chr1_1:52444516-52444535 | None:intergenic | 45.0% |
| CTCTCTTCAAAGAGTGGTCT+TGG | - | chr1_1:52444514-52444533 | Msa0027840:intron | 45.0% | |
| TATCCGTTCTTCGATCATCC+AGG | - | chr1_1:52444559-52444578 | Msa0027840:intron | 45.0% | |
| GAGTATACCAAGTCGAAACC+TGG | + | chr1_1:52444580-52444599 | None:intergenic | 45.0% | |
| !! | GAAATAAAAAAAAAAAAAAA+AGG | + | chr1_1:52441622-52441641 | None:intergenic | 5.0% |
| ! | GATTTCGTTGTGGGTTGACC+CGG | - | chr1_1:52441905-52441924 | Msa0027840:CDS | 50.0% |
| TATCCCTAGTCTACACCACC+GGG | + | chr1_1:52441926-52441945 | None:intergenic | 50.0% | |
| CTAGTTTCAATTGGGCCTGC+TGG | - | chr1_1:52441989-52442008 | Msa0027840:intron | 50.0% | |
| ! | TTAATCCCGCCCGGATTAGA+TGG | - | chr1_1:52442024-52442043 | Msa0027840:CDS | 50.0% |
| AAGTACCATCTAATCCGGGC+GGG | + | chr1_1:52442032-52442051 | None:intergenic | 50.0% | |
| CAAGTACCATCTAATCCGGG+CGG | + | chr1_1:52442033-52442052 | None:intergenic | 50.0% | |
| TTATGGACCTAGTGCCAAGG+TGG | + | chr1_1:52442657-52442676 | None:intergenic | 50.0% | |
| AGCTTATGGACCTAGTGCCA+AGG | + | chr1_1:52442660-52442679 | None:intergenic | 50.0% | |
| ATGAAGAGAGAACCGCTGTC+AGG | + | chr1_1:52443309-52443328 | None:intergenic | 50.0% | |
| ! | GGTTTCAGTGCTGTTGCAGA+AGG | + | chr1_1:52443421-52443440 | None:intergenic | 50.0% |
| AGAGAGAGAGAGAGAGAGAG+AGG | + | chr1_1:52443511-52443530 | None:intergenic | 50.0% | |
| TACAAGAGCTGTGCCTCGTT+CGG | - | chr1_1:52443772-52443791 | Msa0027840:intron | 50.0% | |
| TACTGGGGCTATTGCTCTGA+AGG | - | chr1_1:52444049-52444068 | Msa0027840:intron | 50.0% | |
| ! | ACTGGGGCTATTGCTCTGAA+GGG | - | chr1_1:52444050-52444069 | Msa0027840:intron | 50.0% |
| CAATTGCAACAATGGCGCAC+AGG | + | chr1_1:52444353-52444372 | None:intergenic | 50.0% | |
| ! | AGTGGTCTTGGGTTGTTTCC+CGG | - | chr1_1:52444526-52444545 | Msa0027840:intron | 50.0% |
| CGATCATCCAGGTTTCGACT+TGG | - | chr1_1:52444570-52444589 | Msa0027840:intron | 50.0% | |
| TTGACCCGGTGGTGTAGACT+AGG | - | chr1_1:52441919-52441938 | Msa0027840:intron | 55.0% | |
| TGACCCGGTGGTGTAGACTA+GGG | - | chr1_1:52441920-52441939 | Msa0027840:intron | 55.0% | |
| GTTTCAATTGGGCCTGCTGG+TGG | - | chr1_1:52441992-52442011 | Msa0027840:intron | 55.0% | |
| TAATCCTAGCGTCCACCAGC+AGG | + | chr1_1:52442007-52442026 | None:intergenic | 55.0% | |
| ACGCTAGGATTAATCCCGCC+CGG | - | chr1_1:52442015-52442034 | Msa0027840:CDS | 55.0% | |
| GGTCAAACCACCTTGGCACT+AGG | - | chr1_1:52442647-52442666 | Msa0027840:intron | 55.0% | |
| !! | GCTATTGCTCTGAAGGGCCT+TGG | - | chr1_1:52444056-52444075 | Msa0027840:intron | 55.0% |
| !! | ATTGCTCTGAAGGGCCTTGG+AGG | - | chr1_1:52444059-52444078 | Msa0027840:intron | 55.0% |
| !! | TTGCTCTGAAGGGCCTTGGA+GGG | - | chr1_1:52444060-52444079 | Msa0027840:intron | 55.0% |
| CTCTTTCGGAGCTTTGCTGC+TGG | - | chr1_1:52444102-52444121 | Msa0027840:intron | 55.0% | |
| ! | TTCGTTGTGGGTTGACCCGG+TGG | - | chr1_1:52441908-52441927 | Msa0027840:intron | 60.0% |
| ! | TGGGCCTGCTGGTGGACGCT+AGG | - | chr1_1:52442000-52442019 | Msa0027840:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 52441291 | 52445031 | 52441291 | ID=Msa0027840;Name=Msa0027840 |
| chr1_1 | mRNA | 52441291 | 52445031 | 52441291 | ID=Msa0027840-mRNA-1;Parent=Msa0027840;Name=Msa0027840-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.33|0.5|1|0.33|0.75|4|575|176 |
| chr1_1 | exon | 52441291 | 52441925 | 52441291 | ID=Msa0027840-mRNA-1:exon:15408;Parent=Msa0027840-mRNA-1 |
| chr1_1 | exon | 52442015 | 52442113 | 52442015 | ID=Msa0027840-mRNA-1:exon:15407;Parent=Msa0027840-mRNA-1 |
| chr1_1 | exon | 52442818 | 52442909 | 52442818 | ID=Msa0027840-mRNA-1:exon:15406;Parent=Msa0027840-mRNA-1 |
| chr1_1 | exon | 52444752 | 52445031 | 52444752 | ID=Msa0027840-mRNA-1:exon:15405;Parent=Msa0027840-mRNA-1 |
| chr1_1 | CDS | 52444752 | 52445031 | 52444752 | ID=Msa0027840-mRNA-1:cds;Parent=Msa0027840-mRNA-1 |
| chr1_1 | CDS | 52442818 | 52442909 | 52442818 | ID=Msa0027840-mRNA-1:cds;Parent=Msa0027840-mRNA-1 |
| chr1_1 | CDS | 52442015 | 52442113 | 52442015 | ID=Msa0027840-mRNA-1:cds;Parent=Msa0027840-mRNA-1 |
| chr1_1 | CDS | 52441866 | 52441925 | 52441866 | ID=Msa0027840-mRNA-1:cds;Parent=Msa0027840-mRNA-1 |
| chr1_1 | three_prime_UTR | 52441291 | 52441865 | 52441291 | ID=Msa0027840-mRNA-1:three_prime_utr;Parent=Msa0027840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
