Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0168090 | XP_013468528.1 | 98.718 | 156 | 2 | 0 | 1 | 156 | 1 | 156 | 1.60e-105 | 308 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0168090 | B7FH85 | 98.718 | 156 | 2 | 0 | 1 | 156 | 1 | 156 | 7.62e-106 | 308 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004540 | Msa0168090 | 0.822353 | 2.479384e-53 | -8.615850e-47 |
| Msa0012940 | Msa0168090 | 0.831980 | 1.227342e-55 | -8.615850e-47 |
| Msa0016540 | Msa0168090 | 0.846965 | 1.559308e-59 | -8.615850e-47 |
| Msa0027840 | Msa0168090 | 0.821385 | 4.153549e-53 | -8.615850e-47 |
| Msa0032020 | Msa0168090 | 0.820197 | 7.790225e-53 | -8.615850e-47 |
| Msa0033880 | Msa0168090 | 0.814486 | 1.503592e-51 | -8.615850e-47 |
| Msa0041690 | Msa0168090 | 0.823041 | 1.714413e-53 | -8.615850e-47 |
| Msa0047640 | Msa0168090 | 0.805011 | 1.640130e-49 | -8.615850e-47 |
| Msa0069600 | Msa0168090 | 0.821924 | 3.116865e-53 | -8.615850e-47 |
| Msa0077900 | Msa0168090 | 0.806726 | 7.150601e-50 | -8.615850e-47 |
| Msa0080730 | Msa0168090 | 0.802944 | 4.410968e-49 | -8.615850e-47 |
| Msa0093850 | Msa0168090 | 0.829345 | 5.422855e-55 | -8.615850e-47 |
| Msa0097950 | Msa0168090 | 0.802455 | 5.563867e-49 | -8.615850e-47 |
| Msa0106620 | Msa0168090 | 0.805175 | 1.515727e-49 | -8.615850e-47 |
| Msa0115370 | Msa0168090 | 0.815220 | 1.033588e-51 | -8.615850e-47 |
| Msa0123510 | Msa0168090 | 0.870121 | 1.853444e-66 | -8.615850e-47 |
| Msa0127850 | Msa0168090 | 0.827127 | 1.857312e-54 | -8.615850e-47 |
| Msa0130110 | Msa0168090 | 0.803593 | 3.237763e-49 | -8.615850e-47 |
| Msa0136120 | Msa0168090 | 0.810100 | 1.363094e-50 | -8.615850e-47 |
| Msa0138360 | Msa0168090 | 0.827540 | 1.478701e-54 | -8.615850e-47 |
| Msa0141400 | Msa0168090 | 0.800284 | 1.549020e-48 | -8.615850e-47 |
| Msa0142110 | Msa0168090 | 0.835517 | 1.602157e-56 | -8.615850e-47 |
| Msa0142410 | Msa0168090 | 0.860756 | 1.654751e-63 | -8.615850e-47 |
| Msa0146080 | Msa0168090 | 0.808605 | 2.852490e-50 | -8.615850e-47 |
| Msa0147980 | Msa0168090 | 0.831433 | 1.673970e-55 | -8.615850e-47 |
| Msa0168090 | Msa0169610 | 0.802229 | 6.195317e-49 | -8.615850e-47 |
| Msa0168090 | Msa0174000 | 0.812671 | 3.770468e-51 | -8.615850e-47 |
| Msa0168090 | Msa0178120 | 0.817228 | 3.677471e-52 | -8.615850e-47 |
| Msa0168090 | Msa0209140 | 0.833307 | 5.749190e-56 | -8.615850e-47 |
| Msa0168090 | Msa0223170 | 0.832687 | 8.198023e-56 | -8.615850e-47 |
| Msa0168090 | Msa0229920 | 0.808551 | 2.929467e-50 | -8.615850e-47 |
| Msa0168090 | Msa0236620 | 0.805373 | 1.377615e-49 | -8.615850e-47 |
| Msa0168090 | Msa0241830 | 0.846223 | 2.485990e-59 | -8.615850e-47 |
| Msa0168090 | Msa0244970 | 0.808903 | 2.464268e-50 | -8.615850e-47 |
| Msa0168090 | Msa0244980 | 0.834863 | 2.344097e-56 | -8.615850e-47 |
| Msa0168090 | Msa0245430 | 0.807827 | 4.179041e-50 | -8.615850e-47 |
| Msa0168090 | Msa0245580 | 0.851196 | 1.038545e-60 | -8.615850e-47 |
| Msa0168090 | Msa0249580 | 0.806911 | 6.535721e-50 | -8.615850e-47 |
| Msa0168090 | Msa0261170 | 0.804047 | 2.605031e-49 | -8.615850e-47 |
| Msa0168090 | Msa0270210 | 0.827635 | 1.403476e-54 | -8.615850e-47 |
| Msa0168090 | Msa0279850 | 0.816598 | 5.092358e-52 | -8.615850e-47 |
| Msa0168090 | Msa0283420 | 0.816347 | 5.794725e-52 | -8.615850e-47 |
| Msa0168090 | Msa0296250 | 0.825464 | 4.620352e-54 | -8.615850e-47 |
| Msa0168090 | Msa0300280 | 0.805282 | 1.438907e-49 | -8.615850e-47 |
| Msa0168090 | Msa0301520 | 0.800775 | 1.230109e-48 | -8.615850e-47 |
| Msa0168090 | Msa0305310 | 0.802269 | 6.079587e-49 | -8.615850e-47 |
| Msa0168090 | Msa0322900 | 0.842502 | 2.486118e-58 | -8.615850e-47 |
| Msa0168090 | Msa0341690 | 0.813536 | 2.435505e-51 | -8.615850e-47 |
| Msa0168090 | Msa0363060 | 0.829849 | 4.089863e-55 | -8.615850e-47 |
| Msa0168090 | Msa0384670 | 0.838608 | 2.599120e-57 | -8.615850e-47 |
| Msa0168090 | Msa0434570 | 0.828486 | 8.753878e-55 | -8.615850e-47 |
| Msa0168090 | Msa0434770 | 0.834161 | 3.517256e-56 | -8.615850e-47 |
| Msa0168090 | Msa0474700 | 0.821520 | 3.865620e-53 | -8.615850e-47 |
| Msa0168090 | Msa0478580 | 0.842516 | 2.465715e-58 | -8.615850e-47 |
| Msa0168090 | Msa0484740 | 0.806930 | 6.474690e-50 | -8.615850e-47 |
| Msa0168090 | Msa0485240 | 0.825653 | 4.167836e-54 | -8.615850e-47 |
| Msa0168090 | Msa0509120 | 0.801823 | 7.506369e-49 | -8.615850e-47 |
| Msa0168090 | Msa0511770 | 0.816341 | 5.814245e-52 | -8.615850e-47 |
| Msa0168090 | Msa0518030 | 0.838501 | 2.769898e-57 | -8.615850e-47 |
| Msa0168090 | Msa0531250 | 0.835141 | 1.994455e-56 | -8.615850e-47 |
| Msa0168090 | Msa0534750 | 0.804348 | 2.255057e-49 | -8.615850e-47 |
| Msa0168090 | Msa0547990 | 0.859928 | 2.944726e-63 | -8.615850e-47 |
| Msa0168090 | Msa0583500 | 0.810843 | 9.420250e-51 | -8.615850e-47 |
| Msa0168090 | Msa0588090 | 0.808259 | 3.381579e-50 | -8.615850e-47 |
| Msa0168090 | Msa0590640 | 0.805988 | 1.023068e-49 | -8.615850e-47 |
| Msa0168090 | Msa0593700 | 0.825141 | 5.511203e-54 | -8.615850e-47 |
| Msa0168090 | Msa0597770 | 0.807681 | 4.487966e-50 | -8.615850e-47 |
| Msa0168090 | Msa0628420 | 0.832509 | 9.079636e-56 | -8.615850e-47 |
| Msa0168090 | Msa0633570 | 0.819414 | 1.176106e-52 | -8.615850e-47 |
| Msa0168090 | Msa0644030 | 0.836879 | 7.224287e-57 | -8.615850e-47 |
| Msa0168090 | Msa0656810 | 0.823731 | 1.182537e-53 | -8.615850e-47 |
| Msa0168090 | Msa0669180 | 0.839577 | 1.458372e-57 | -8.615850e-47 |
| Msa0168090 | Msa0679100 | 0.804252 | 2.362159e-49 | -8.615850e-47 |
| Msa0168090 | Msa0698100 | 0.804425 | 2.173444e-49 | -8.615850e-47 |
| Msa0168090 | Msa0699780 | 0.809147 | 2.184619e-50 | -8.615850e-47 |
| Msa0168090 | Msa0712560 | 0.820632 | 6.190774e-53 | -8.615850e-47 |
| Msa0168090 | Msa0716410 | 0.825905 | 3.631956e-54 | -8.615850e-47 |
| Msa0168090 | Msa0744100 | 0.845625 | 3.614779e-59 | -8.615850e-47 |
| Msa0168090 | Msa0788120 | 0.832596 | 8.640127e-56 | -8.615850e-47 |
| Msa0168090 | Msa0799000 | 0.816313 | 5.897115e-52 | -8.615850e-47 |
| Msa0168090 | Msa0825270 | 0.853897 | 1.763741e-61 | -8.615850e-47 |
| Msa0168090 | Msa0826510 | 0.824449 | 8.022130e-54 | -8.615850e-47 |
| Msa0168090 | Msa0864420 | 0.850098 | 2.114656e-60 | -8.615850e-47 |
| Msa0168090 | Msa0865620 | 0.816288 | 5.974111e-52 | -8.615850e-47 |
| Msa0168090 | Msa0870650 | 0.801329 | 9.478422e-49 | -8.615850e-47 |
| Msa0168090 | Msa0943170 | 0.822011 | 2.975697e-53 | -8.615850e-47 |
| Msa0168090 | Msa0963020 | 0.808038 | 3.769463e-50 | -8.615850e-47 |
| Msa0168090 | Msa0980540 | 0.800807 | 1.212039e-48 | -8.615850e-47 |
| Msa0168090 | Msa0981430 | 0.822265 | 2.597744e-53 | -8.615850e-47 |
| Msa0168090 | Msa1027250 | 0.823265 | 1.519844e-53 | -8.615850e-47 |
| Msa0168090 | Msa1027300 | 0.808987 | 2.363904e-50 | -8.615850e-47 |
| Msa0168090 | Msa1027360 | 0.820857 | 5.494434e-53 | -8.615850e-47 |
| Msa0168090 | Msa1030080 | 0.803623 | 3.191291e-49 | -8.615850e-47 |
| Msa0168090 | Msa1031390 | 0.804224 | 2.394000e-49 | -8.615850e-47 |
| Msa0168090 | Msa1035230 | 0.800953 | 1.131566e-48 | -8.615850e-47 |
| Msa0168090 | Msa1072600 | 0.812605 | 3.896923e-51 | -8.615850e-47 |
| Msa0168090 | Msa1076560 | 0.807501 | 4.901841e-50 | -8.615850e-47 |
| Msa0168090 | Msa1083880 | 0.807082 | 6.012504e-50 | -8.615850e-47 |
| Msa0168090 | Msa1123350 | 0.855795 | 4.964436e-62 | -8.615850e-47 |
| Msa0168090 | Msa1127540 | 0.816898 | 4.362289e-52 | -8.615850e-47 |
| Msa0168090 | Msa1127590 | 0.816745 | 4.719404e-52 | -8.615850e-47 |
| Msa0168090 | Msa1145240 | 0.817517 | 3.164725e-52 | -8.615850e-47 |
| Msa0168090 | Msa1165780 | 0.811183 | 7.950478e-51 | -8.615850e-47 |
| Msa0168090 | Msa1173900 | 0.803067 | 4.159495e-49 | -8.615850e-47 |
| Msa0168090 | Msa1206650 | 0.822762 | 1.991867e-53 | -8.615850e-47 |
| Msa0168090 | Msa1276970 | 0.808818 | 2.568840e-50 | -8.615850e-47 |
| Msa0168090 | Msa1344310 | 0.821108 | 4.810888e-53 | -8.615850e-47 |
| Msa0168090 | Msa1356610 | 0.838596 | 2.618659e-57 | -8.615850e-47 |
| Msa0168090 | Msa1362420 | 0.805728 | 1.160635e-49 | -8.615850e-47 |
| Msa0168090 | Msa1371520 | 0.810785 | 9.696134e-51 | -8.615850e-47 |
| Msa0168090 | Msa1373170 | 0.819225 | 1.298644e-52 | -8.615850e-47 |
| Msa0168090 | Msa1373820 | 0.838753 | 2.384529e-57 | -8.615850e-47 |
| Msa0168090 | Msa1391480 | 0.859121 | 5.148955e-63 | -8.615850e-47 |
| Msa0168090 | Msa1398790 | 0.851882 | 6.645184e-61 | -8.615850e-47 |
| Msa0168090 | Msa1403570 | 0.818881 | 1.554894e-52 | -8.615850e-47 |
| Msa0168090 | Msa1411950 | 0.853713 | 1.992322e-61 | -8.615850e-47 |
| Msa0168090 | Msa1418240 | 0.826359 | 2.833425e-54 | -8.615850e-47 |
| Msa0168090 | Msa1418500 | 0.814098 | 1.831625e-51 | -8.615850e-47 |
| Msa0168090 | Msa1421560 | 0.802347 | 5.857202e-49 | -8.615850e-47 |
| Msa0168090 | Msa1427160 | 0.821876 | 3.197415e-53 | -8.615850e-47 |
| Msa0168090 | Msa1432480 | 0.902599 | 8.225009e-79 | -8.615850e-47 |
| Msa0168090 | Msa1459910 | 0.822456 | 2.346586e-53 | -8.615850e-47 |
| Msa0168090 | Msa1459960 | 0.821349 | 4.233669e-53 | -8.615850e-47 |
| Msa0168090 | Msa1462910 | 0.813403 | 2.605791e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0168090 | MtrunA17_Chr1g0184251 | 98.718 | 156 | 2 | 0 | 1 | 156 | 1 | 156 | 1.47e-109 | 308 |
| Msa0168090 | MtrunA17_Chr7g0261051 | 78.767 | 146 | 31 | 0 | 1 | 146 | 1 | 146 | 1.32e-83 | 242 |
| Msa0168090 | MtrunA17_Chr1g0186541 | 53.797 | 158 | 69 | 2 | 1 | 154 | 1 | 158 | 2.01e-51 | 161 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0168090 | AT4G14420.1 | 61.146 | 157 | 59 | 1 | 1 | 155 | 1 | 157 | 1.14e-58 | 180 |
| Msa0168090 | AT1G04340.1 | 53.165 | 158 | 71 | 1 | 1 | 155 | 1 | 158 | 9.35e-54 | 167 |
| Msa0168090 | AT5G43460.2 | 51.592 | 157 | 70 | 2 | 1 | 155 | 1 | 153 | 8.73e-50 | 157 |
| Msa0168090 | AT5G43460.1 | 51.592 | 157 | 70 | 2 | 1 | 155 | 1 | 153 | 8.73e-50 | 157 |
| Msa0168090 | AT3G23190.1 | 41.026 | 117 | 52 | 2 | 8 | 124 | 25 | 124 | 2.42e-19 | 81.3 |
| Msa0168090 | AT3G23180.1 | 36.441 | 118 | 62 | 1 | 7 | 124 | 24 | 128 | 3.90e-17 | 75.5 |
| Msa0168090 | AT3G23180.2 | 36.441 | 118 | 62 | 1 | 7 | 124 | 24 | 128 | 3.90e-17 | 75.5 |
| Msa0168090 | AT3G23175.1 | 28.571 | 154 | 92 | 3 | 5 | 152 | 24 | 165 | 3.31e-13 | 63.9 |
Find 58 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCACTCAGATTAAATTAT+TGG | 0.106768 | 1_4:-50346971 | Msa0168090:three_prime_UTR |
| GCCTTCTTTGGTTGTCTTCT+AGG | 0.155377 | 1_4:+50347164 | None:intergenic |
| CTATATAGATATAACGAATT+TGG | 0.168785 | 1_4:-50348201 | Msa0168090:intron |
| AGTTGCTCACGGAATGTTTA+TGG | 0.189962 | 1_4:-50346702 | Msa0168090:three_prime_UTR |
| CGGAATGTTTATGGAGTAAT+TGG | 0.217222 | 1_4:-50346693 | Msa0168090:three_prime_UTR |
| TTTAATGCCTTCCATGAAAA+TGG | 0.240041 | 1_4:-50346735 | Msa0168090:three_prime_UTR |
| GAGTGTCTTGGGTTGTTTCC+TGG | 0.261511 | 1_4:-50347091 | Msa0168090:three_prime_UTR |
| CAGATTAAACTTGTAATTAC+TGG | 0.264664 | 1_4:-50347586 | Msa0168090:CDS |
| AACTTCAACTGTAATGAAAT+TGG | 0.280224 | 1_4:+50346808 | None:intergenic |
| TTCATATTCGGAAGCTCTTT+CGG | 0.294913 | 1_4:-50347529 | Msa0168090:CDS |
| ATGAATGTTAGCACGGCTTT+AGG | 0.321521 | 1_4:-50346914 | Msa0168090:three_prime_UTR |
| GTAAGCAGAGAGAATGAAAA+TGG | 0.336820 | 1_4:+50350039 | None:intergenic |
| CTCTTTCGGAGCTTTGCTGC+TGG | 0.368078 | 1_4:-50347515 | Msa0168090:intron |
| CTCTCTTCAAAGAGTGTCTT+GGG | 0.368882 | 1_4:-50347102 | Msa0168090:three_prime_UTR |
| ATGGCTTTCTCTTCCTTTCT+CGG | 0.374329 | 1_4:-50350079 | Msa0168090:CDS |
| GCTATTGCTCTGAAGGGCCT+TGG | 0.375035 | 1_4:-50347562 | Msa0168090:CDS |
| ATTGCTCTGAAGGGCCTTGG+AGG | 0.394581 | 1_4:-50347559 | Msa0168090:CDS |
| CTTTGGTTGTCTTCTAGGAA+TGG | 0.422045 | 1_4:+50347169 | None:intergenic |
| TATAACGAATTTGGAGTTGA+GGG | 0.426480 | 1_4:-50348192 | Msa0168090:CDS |
| GAAAGAGAGAAAGAAGAGAA+AGG | 0.428475 | 1_4:+50350201 | None:intergenic |
| CATTTCACTTAATTAGACTT+TGG | 0.431464 | 1_4:-50346783 | Msa0168090:three_prime_UTR |
| GTTGAAAGCCAACTTGAGAA+TGG | 0.444032 | 1_4:+50348115 | None:intergenic |
| TGTGCAAAGGAATCAAGCTT+TGG | 0.445686 | 1_4:+50348144 | None:intergenic |
| CAAAGTCTAATTAAGTGAAA+TGG | 0.452918 | 1_4:+50346784 | None:intergenic |
| TTTCAAGTGGTGAAAACAAA+AGG | 0.457127 | 1_4:-50346864 | Msa0168090:three_prime_UTR |
| CCTCTCTTCAAAGAGTGTCT+TGG | 0.459226 | 1_4:-50347103 | Msa0168090:three_prime_UTR |
| TTTCGACTTGGTATACTCTC+TGG | 0.460788 | 1_4:-50347035 | Msa0168090:three_prime_UTR |
| GGTTTCAGTGCTGTTGCAGA+AGG | 0.469228 | 1_4:+50348165 | None:intergenic |
| TTGCTCTGAAGGGCCTTGGA+GGG | 0.470152 | 1_4:-50347558 | Msa0168090:CDS |
| TGCTCTGAAGGGCCTTGGAG+GGG | 0.472119 | 1_4:-50347557 | Msa0168090:CDS |
| AGATTAAACTTGTAATTACT+GGG | 0.475430 | 1_4:-50347585 | Msa0168090:CDS |
| GAGAGACTAACATCAATCTC+TGG | 0.486838 | 1_4:+50348090 | None:intergenic |
| TACTGGGGCTATTGCTCTGA+AGG | 0.491768 | 1_4:-50347569 | Msa0168090:CDS |
| CGATCATCCAGGTTTCGACT+TGG | 0.499500 | 1_4:-50347047 | Msa0168090:three_prime_UTR |
| TATCCGTTCTTCGATCATCC+AGG | 0.510967 | 1_4:-50347058 | Msa0168090:three_prime_UTR |
| TAAACATTCCGTGAGCAACT+TGG | 0.513469 | 1_4:+50346705 | None:intergenic |
| CATCGAATCCATTCTCAAGT+TGG | 0.513513 | 1_4:-50348123 | Msa0168090:CDS |
| GAAGAGAACTCTTCCGAGAA+AGG | 0.515382 | 1_4:+50350066 | None:intergenic |
| TCCTAGAAGACAACCAAAGA+AGG | 0.517286 | 1_4:-50347165 | Msa0168090:CDS |
| GAGTATACCAAGTCGAAACC+TGG | 0.519243 | 1_4:+50347040 | None:intergenic |
| TCTTTGTTGCTAAGAAGAAG+AGG | 0.535447 | 1_4:+50350123 | None:intergenic |
| TCTTCTTCTTAGCAACAAAG+AGG | 0.548813 | 1_4:-50350121 | Msa0168090:five_prime_UTR |
| CTTAATTAGACTTTGGCCCA+AGG | 0.550656 | 1_4:-50346776 | Msa0168090:three_prime_UTR |
| GCTGCTTTCCAAGTTGCTCA+CGG | 0.558545 | 1_4:-50346713 | Msa0168090:three_prime_UTR |
| ATATAACGAATTTGGAGTTG+AGG | 0.561681 | 1_4:-50348193 | Msa0168090:CDS |
| TGCTAAACTTGTGTTTCAAG+TGG | 0.565849 | 1_4:-50346877 | Msa0168090:three_prime_UTR |
| AAAGTAAAGAGGGATGATGA+TGG | 0.592777 | 1_4:+50350246 | None:intergenic |
| TGGTGTGTTAAAATATAGAG+TGG | 0.607760 | 1_4:-50346673 | Msa0168090:three_prime_UTR |
| TAACGAATTTGGAGTTGAGG+GGG | 0.607819 | 1_4:-50348190 | Msa0168090:CDS |
| ACTGGGGCTATTGCTCTGAA+GGG | 0.616718 | 1_4:-50347568 | Msa0168090:CDS |
| AGAATGGATTCGATGTGCAA+AGG | 0.617931 | 1_4:+50348131 | None:intergenic |
| ATAACGAATTTGGAGTTGAG+GGG | 0.638240 | 1_4:-50348191 | Msa0168090:CDS |
| AACGAATTTGGAGTTGAGGG+GGG | 0.640083 | 1_4:-50348189 | Msa0168090:CDS |
| CCAAGACACTCTTTGAAGAG+AGG | 0.643583 | 1_4:+50347103 | None:intergenic |
| AACGGATACAATGAAGAACC+AGG | 0.646121 | 1_4:+50347073 | None:intergenic |
| ATATGAAAAGAACCCCTCCA+AGG | 0.650548 | 1_4:+50347545 | None:intergenic |
| AAACCTGGATGATCGAAGAA+CGG | 0.662085 | 1_4:+50347055 | None:intergenic |
| GATTAAACTTGTAATTACTG+GGG | 0.669590 | 1_4:-50347584 | Msa0168090:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAAAAGGAAAATTAAA+CGG | + | chr1_4:50346905-50346924 | None:intergenic | 10.0% |
| !!! | ATATTTTTTGAAAGTAAAGA+GGG | + | chr1_4:50346644-50346663 | None:intergenic | 15.0% |
| !!! | AATATTTTTTGAAAGTAAAG+AGG | + | chr1_4:50346645-50346664 | None:intergenic | 15.0% |
| !!! | TCTAAAACAGAAATAAAAAA+AGG | + | chr1_4:50346917-50346936 | None:intergenic | 15.0% |
| !!! | TATTTTTTTTCCTATAGATT+TGG | - | chr1_4:50346964-50346983 | Msa0168090:three_prime_UTR | 15.0% |
| !! | TTTAAACCTTAAAAACATAA+CGG | - | chr1_4:50347058-50347077 | Msa0168090:three_prime_UTR | 15.0% |
| !!! | TGCTTTTGTTTAATTTTTTA+TGG | - | chr1_4:50347411-50347430 | Msa0168090:intron | 15.0% |
| !!! | TTTATGGTATTGAATTTTAT+AGG | - | chr1_4:50347427-50347446 | Msa0168090:intron | 15.0% |
| !! | CTATTCATATTATTAAACAA+CGG | - | chr1_4:50347632-50347651 | Msa0168090:intron | 15.0% |
| !! | TATTCATATTATTAAACAAC+GGG | - | chr1_4:50347633-50347652 | Msa0168090:intron | 15.0% |
| !! | AACAATTTACATATATTGTT+AGG | + | chr1_4:50347977-50347996 | None:intergenic | 15.0% |
| !! | TGAACAATTATAATATCAAA+TGG | + | chr1_4:50348559-50348578 | None:intergenic | 15.0% |
| !!! | ATCTAATATGTTTTTGTTTT+TGG | + | chr1_4:50349740-50349759 | None:intergenic | 15.0% |
| !! | CAAATAGAAATCAATAAAGA+AGG | + | chr1_4:50346880-50346899 | None:intergenic | 20.0% |
| !! | ATTGACTATATGGTTATTAT+CGG | - | chr1_4:50347577-50347596 | Msa0168090:CDS | 20.0% |
| !!! | AAGTTTTCAATCACTTAAAA+TGG | + | chr1_4:50348165-50348184 | None:intergenic | 20.0% |
| !! | ATGCTTCTTATATAAAAGAA+TGG | + | chr1_4:50348244-50348263 | None:intergenic | 20.0% |
| !! | ATTCAGTAAGAATTAAAACA+TGG | + | chr1_4:50348383-50348402 | None:intergenic | 20.0% |
| !! | TTCACTAAAGCATAAAAATA+GGG | + | chr1_4:50348626-50348645 | None:intergenic | 20.0% |
| !! | CTATATAGATATAACGAATT+TGG | - | chr1_4:50348676-50348695 | Msa0168090:intron | 20.0% |
| !!! | TAATTTGTGATGAAATTGTA+TGG | + | chr1_4:50348975-50348994 | None:intergenic | 20.0% |
| !! | TTAAGTTAAATTGAAAAGAC+CGG | - | chr1_4:50349078-50349097 | Msa0168090:intron | 20.0% |
| !! | AATGCAAAAAAGTTAACAAA+TGG | + | chr1_4:50349126-50349145 | None:intergenic | 20.0% |
| !! | ATAGAAAATAATGAGCAAAA+GGG | + | chr1_4:50349238-50349257 | None:intergenic | 20.0% |
| !! | AGATTAAACTTGTAATTACT+GGG | - | chr1_4:50349292-50349311 | Msa0168090:intron | 20.0% |
| !!! | TAGTTACGATCTTTTTTTTT+TGG | - | chr1_4:50349437-50349456 | Msa0168090:intron | 20.0% |
| !! | TTGTAAAAATCATAACGAAT+TGG | + | chr1_4:50349498-50349517 | None:intergenic | 20.0% |
| ! | TAGAAATCAATAAAGAAGGA+AGG | + | chr1_4:50346876-50346895 | None:intergenic | 25.0% |
| ! | ATTTCAACAACCAAATCTAT+AGG | + | chr1_4:50346977-50346996 | None:intergenic | 25.0% |
| ! | TACACTTTAACTGATTGTTA+AGG | + | chr1_4:50347093-50347112 | None:intergenic | 25.0% |
| ! | TAACAATCAGTTAAAGTGTA+AGG | - | chr1_4:50347093-50347112 | Msa0168090:three_prime_UTR | 25.0% |
| ! | TAAACATAGTGTACTACAAT+TGG | + | chr1_4:50347852-50347871 | None:intergenic | 25.0% |
| ! | AAATATTGAATGTGATGTAG+GGG | + | chr1_4:50347904-50347923 | None:intergenic | 25.0% |
| ! | GAAATATTGAATGTGATGTA+GGG | + | chr1_4:50347905-50347924 | None:intergenic | 25.0% |
| ! | AGAAATATTGAATGTGATGT+AGG | + | chr1_4:50347906-50347925 | None:intergenic | 25.0% |
| ! | TATTGTTAGGAAATAGCTTA+TGG | + | chr1_4:50347964-50347983 | None:intergenic | 25.0% |
| ! | AAACATGCAATAACTACTTA+TGG | - | chr1_4:50348029-50348048 | Msa0168090:intron | 25.0% |
| ! | CTAATTATGGAAACAAAAGT+AGG | - | chr1_4:50348079-50348098 | Msa0168090:intron | 25.0% |
| ! | GTAGGTAGTATTTAATGAAA+TGG | - | chr1_4:50348097-50348116 | Msa0168090:intron | 25.0% |
| ! | AATGGAAAACACTGTATATA+TGG | - | chr1_4:50348115-50348134 | Msa0168090:CDS | 25.0% |
| ! | AACAATAGAAAAAGTTTACC+AGG | + | chr1_4:50348275-50348294 | None:intergenic | 25.0% |
| ! | TAATAGCACATTACATAGAA+CGG | + | chr1_4:50348347-50348366 | None:intergenic | 25.0% |
| ! | TTATTTAATAATCCTGACAG+CGG | - | chr1_4:50348587-50348606 | Msa0168090:intron | 25.0% |
| ! | TCACTAAAGCATAAAAATAG+GGG | + | chr1_4:50348625-50348644 | None:intergenic | 25.0% |
| ! | CTTCACTAAAGCATAAAAAT+AGG | + | chr1_4:50348627-50348646 | None:intergenic | 25.0% |
| ! | TATGGCACAAATATTTATTG+TGG | + | chr1_4:50348957-50348976 | None:intergenic | 25.0% |
| !!! | TTTCATTTTTTATGCCAGAT+CGG | + | chr1_4:50349171-50349190 | None:intergenic | 25.0% |
| ! | CATAGAAAATAATGAGCAAA+AGG | + | chr1_4:50349239-50349258 | None:intergenic | 25.0% |
| ! | ACATCACATCAGTTATATTA+GGG | + | chr1_4:50349270-50349289 | None:intergenic | 25.0% |
| ! | CAGATTAAACTTGTAATTAC+TGG | - | chr1_4:50349291-50349310 | Msa0168090:intron | 25.0% |
| ! | GATTAAACTTGTAATTACTG+GGG | - | chr1_4:50349293-50349312 | Msa0168090:intron | 25.0% |
| !! | TTTTTACAATTATGACAACG+AGG | - | chr1_4:50349509-50349528 | Msa0168090:intron | 25.0% |
| !! | ACTTTTCATCAAATTTACAC+AGG | - | chr1_4:50349548-50349567 | Msa0168090:intron | 25.0% |
| ! | CTTCACTCAGATTAAATTAT+TGG | - | chr1_4:50349906-50349925 | Msa0168090:intron | 25.0% |
| !! | TTTTTGTATGAATGTTAGCA+CGG | - | chr1_4:50349956-50349975 | Msa0168090:intron | 25.0% |
| ! | AACTTCAACTGTAATGAAAT+TGG | + | chr1_4:50350072-50350091 | None:intergenic | 25.0% |
| ! | CAAAGTCTAATTAAGTGAAA+TGG | + | chr1_4:50350096-50350115 | None:intergenic | 25.0% |
| ! | CATTTCACTTAATTAGACTT+TGG | - | chr1_4:50350094-50350113 | Msa0168090:exon | 25.0% |
| ! | GAGAAAAAAAAAAAAGCCTT+GGG | + | chr1_4:50350120-50350139 | None:intergenic | 25.0% |
| ! | AGAGAAAAAAAAAAAAGCCT+TGG | + | chr1_4:50350121-50350140 | None:intergenic | 25.0% |
| AGAAGAAGAGGAAAAATCTA+GGG | + | chr1_4:50346745-50346764 | None:intergenic | 30.0% | |
| AAGAAGAAGAGGAAAAATCT+AGG | + | chr1_4:50346746-50346765 | None:intergenic | 30.0% | |
| AACAACAACAACAACAACAA+TGG | - | chr1_4:50346779-50346798 | Msa0168090:three_prime_UTR | 30.0% | |
| !! | TTGGATCCGTTATGTTTTTA+AGG | + | chr1_4:50347067-50347086 | None:intergenic | 30.0% |
| TAACTGATTGTTAAGGTTGT+TGG | + | chr1_4:50347086-50347105 | None:intergenic | 30.0% | |
| ! | GCTTTACTCTAGTTTCAATT+GGG | - | chr1_4:50347275-50347294 | Msa0168090:intron | 30.0% |
| !!! | GCTTTTTTCTATCGTAAACT+CGG | + | chr1_4:50347355-50347374 | None:intergenic | 30.0% |
| ! | AACTGTTGCAAATCTTTTGT+AGG | - | chr1_4:50347460-50347479 | Msa0168090:intron | 30.0% |
| TCAATACAGAAGAAAATGCA+AGG | + | chr1_4:50347494-50347513 | None:intergenic | 30.0% | |
| !! | AATAATTTTGCTATAGCTGC+TGG | - | chr1_4:50347519-50347538 | Msa0168090:CDS | 30.0% |
| ! | TGGTTATTCTTTTCTGGATA+TGG | - | chr1_4:50347539-50347558 | Msa0168090:CDS | 30.0% |
| !! | ATTGTGCATGAATGTTTTTG+AGG | - | chr1_4:50347709-50347728 | Msa0168090:intron | 30.0% |
| TTGCATGAATTGTAAATGCA+TGG | - | chr1_4:50347745-50347764 | Msa0168090:intron | 30.0% | |
| TTGTAAATGCATGGATATGA+TGG | - | chr1_4:50347754-50347773 | Msa0168090:intron | 30.0% | |
| !! | AACTTTGTTATTAGGAACTG+AGG | + | chr1_4:50347790-50347809 | None:intergenic | 30.0% |
| TCCTAATAACAAAGTTGCTT+TGG | - | chr1_4:50347794-50347813 | Msa0168090:intron | 30.0% | |
| !! | ACCAAAGCAACTTTGTTATT+AGG | + | chr1_4:50347798-50347817 | None:intergenic | 30.0% |
| !! | CAATATTTCTAGCAGTCTAT+TGG | - | chr1_4:50347916-50347935 | Msa0168090:intron | 30.0% |
| TCCATTCAGAACACTAATTA+TGG | - | chr1_4:50348066-50348085 | Msa0168090:intron | 30.0% | |
| ! | TCCATAATTAGTGTTCTGAA+TGG | + | chr1_4:50348070-50348089 | None:intergenic | 30.0% |
| !! | CTATTGTTGAATTTTTGAGC+TGG | - | chr1_4:50348287-50348306 | Msa0168090:intron | 30.0% |
| TAAGAATTAAAACATGGCCA+AGG | + | chr1_4:50348377-50348396 | None:intergenic | 30.0% | |
| GCTGTCAGGATTATTAAATA+AGG | + | chr1_4:50348588-50348607 | None:intergenic | 30.0% | |
| ! | ATATAACGAATTTGGAGTTG+AGG | - | chr1_4:50348684-50348703 | Msa0168090:intron | 30.0% |
| ! | TATAACGAATTTGGAGTTGA+GGG | - | chr1_4:50348685-50348704 | Msa0168090:intron | 30.0% |
| AGCTCTTGTACTTTATTGAA+GGG | + | chr1_4:50349021-50349040 | None:intergenic | 30.0% | |
| ! | TTATTATTCTTTTCCGAACG+AGG | + | chr1_4:50349047-50349066 | None:intergenic | 30.0% |
| TCGTTCGGAAAAGAATAATA+AGG | - | chr1_4:50349046-50349065 | Msa0168090:intron | 30.0% | |
| GGAAAAGAATAATAAGGACA+AGG | - | chr1_4:50349052-50349071 | Msa0168090:intron | 30.0% | |
| AAAGAATAATAAGGACAAGG+TGG | - | chr1_4:50349055-50349074 | Msa0168090:intron | 30.0% | |
| CACATCACATCAGTTATATT+AGG | + | chr1_4:50349271-50349290 | None:intergenic | 30.0% | |
| TCAATAAGCAATTGCAACAA+TGG | + | chr1_4:50349623-50349642 | None:intergenic | 30.0% | |
| !!! | GAGCTTTGTTGTTTTTCATT+GGG | - | chr1_4:50349675-50349694 | Msa0168090:intron | 30.0% |
| ! | TTTCAAGTGGTGAAAACAAA+AGG | - | chr1_4:50350013-50350032 | Msa0168090:intron | 30.0% |
| TTTAATGCCTTCCATGAAAA+TGG | - | chr1_4:50350142-50350161 | Msa0168090:five_prime_UTR | 30.0% | |
| TGGTGTGTTAAAATATAGAG+TGG | - | chr1_4:50350204-50350223 | Msa0168090:five_prime_UTR | 30.0% | |
| AAAGTAAAGAGGGATGATGA+TGG | + | chr1_4:50346634-50346653 | None:intergenic | 35.0% | |
| GAAAGAGAGAAAGAAGAGAA+AGG | + | chr1_4:50346679-50346698 | None:intergenic | 35.0% | |
| TCTTTGTTGCTAAGAAGAAG+AGG | + | chr1_4:50346757-50346776 | None:intergenic | 35.0% | |
| TCTTCTTCTTAGCAACAAAG+AGG | - | chr1_4:50346756-50346775 | Msa0168090:three_prime_UTR | 35.0% | |
| GTAAGCAGAGAGAATGAAAA+TGG | + | chr1_4:50346841-50346860 | None:intergenic | 35.0% | |
| ! | TCAAACGATTGATTTCGTTG+TGG | - | chr1_4:50347167-50347186 | Msa0168090:CDS | 35.0% |
| ! | CAAACGATTGATTTCGTTGT+GGG | - | chr1_4:50347168-50347187 | Msa0168090:CDS | 35.0% |
| ! | AACTAGAGTAAAGCCTTGTA+TGG | + | chr1_4:50347269-50347288 | None:intergenic | 35.0% |
| ! | GGCTTTACTCTAGTTTCAAT+TGG | - | chr1_4:50347274-50347293 | Msa0168090:intron | 35.0% |
| !!! | AGCGATTAAGTTGCTTTTCT+AGG | - | chr1_4:50347375-50347394 | Msa0168090:CDS | 35.0% |
| ! | TCTTTTCTGGATATGGTATG+TGG | - | chr1_4:50347546-50347565 | Msa0168090:CDS | 35.0% |
| AACGGGTAACATTGAATTCA+GGG | - | chr1_4:50347650-50347669 | Msa0168090:intron | 35.0% | |
| ! | ACTACAATTGGTTCATTGTG+CGG | + | chr1_4:50347840-50347859 | None:intergenic | 35.0% |
| TGTTTCTTAACCAGTGCATT+TGG | - | chr1_4:50348202-50348221 | Msa0168090:intron | 35.0% | |
| TAATAGATGTCCAAATGCAC+TGG | + | chr1_4:50348215-50348234 | None:intergenic | 35.0% | |
| !! | TGTTGAATTTTTGAGCTGGA+AGG | - | chr1_4:50348291-50348310 | Msa0168090:intron | 35.0% |
| ! | TGTGCTATTATACATTGCCT+TGG | - | chr1_4:50348357-50348376 | Msa0168090:intron | 35.0% |
| ! | ACTTTTGCAGACACAGATAA+TGG | + | chr1_4:50348476-50348495 | None:intergenic | 35.0% |
| TAGCATTGCACTTTATAAGC+TGG | - | chr1_4:50348505-50348524 | Msa0168090:intron | 35.0% | |
| ! | ATAACGAATTTGGAGTTGAG+GGG | - | chr1_4:50348686-50348705 | Msa0168090:intron | 35.0% |
| AAAAACATGATCTGTCCTTC+AGG | - | chr1_4:50348892-50348911 | Msa0168090:intron | 35.0% | |
| CAGCTCTTGTACTTTATTGA+AGG | + | chr1_4:50349022-50349041 | None:intergenic | 35.0% | |
| AATGGACATGTAATATCCAC+TGG | + | chr1_4:50349108-50349127 | None:intergenic | 35.0% | |
| ATTATGCTAAATTGCCGATC+TGG | - | chr1_4:50349154-50349173 | Msa0168090:intron | 35.0% | |
| GAAAATAATGAGCAAAAGGG+AGG | + | chr1_4:50349235-50349254 | None:intergenic | 35.0% | |
| TCAGTTATATTAGGGAACAC+TGG | + | chr1_4:50349262-50349281 | None:intergenic | 35.0% | |
| TTCATATTCGGAAGCTCTTT+CGG | - | chr1_4:50349348-50349367 | Msa0168090:intron | 35.0% | |
| ! | TGGTTTGTCAGATTCTCTAT+TGG | - | chr1_4:50349382-50349401 | Msa0168090:intron | 35.0% |
| CTGAGCAAATGAGATGAATA+TGG | + | chr1_4:50349411-50349430 | None:intergenic | 35.0% | |
| !!! | GGAGCTTTGTTGTTTTTCAT+TGG | - | chr1_4:50349674-50349693 | Msa0168090:intron | 35.0% |
| !!! | TTTGTTTTTGGAGCCTTCTT+TGG | + | chr1_4:50349728-50349747 | None:intergenic | 35.0% |
| TGCTAAACTTGTGTTTCAAG+TGG | - | chr1_4:50350000-50350019 | Msa0168090:intron | 35.0% | |
| CGGAATGTTTATGGAGTAAT+TGG | - | chr1_4:50350184-50350203 | Msa0168090:five_prime_UTR | 35.0% | |
| ATGGCTTTCTCTTCCTTTCT+CGG | - | chr1_4:50346798-50346817 | Msa0168090:three_prime_UTR | 40.0% | |
| AGAAGGAAGGAACTAACTCT+TGG | + | chr1_4:50346863-50346882 | None:intergenic | 40.0% | |
| TATGCTCCTCTATAGGTATG+AGG | - | chr1_4:50347216-50347235 | Msa0168090:CDS | 40.0% | |
| ATGGAACCTCATACCTATAG+AGG | + | chr1_4:50347225-50347244 | None:intergenic | 40.0% | |
| ! | AGGATTAATCCCGGATTAGA+TGG | - | chr1_4:50347314-50347333 | Msa0168090:intron | 40.0% |
| TGCTCAAGTACCATCTAATC+CGG | + | chr1_4:50347327-50347346 | None:intergenic | 40.0% | |
| !! | AGCTGCTGGTTATTCTTTTC+TGG | - | chr1_4:50347533-50347552 | Msa0168090:CDS | 40.0% |
| GGTTCGTTGGATTGACTATA+TGG | - | chr1_4:50347567-50347586 | Msa0168090:CDS | 40.0% | |
| ! | TATCGGCTAACATGTTAGCT+TGG | - | chr1_4:50347594-50347613 | Msa0168090:intron | 40.0% |
| CAACGGGTAACATTGAATTC+AGG | - | chr1_4:50347649-50347668 | Msa0168090:intron | 40.0% | |
| ACGGGTAACATTGAATTCAG+GGG | - | chr1_4:50347651-50347670 | Msa0168090:intron | 40.0% | |
| !! | GTGCATGAATGTTTTTGAGG+AGG | - | chr1_4:50347712-50347731 | Msa0168090:intron | 40.0% |
| ATTAGGAACTGAGGAGTTTG+TGG | + | chr1_4:50347781-50347800 | None:intergenic | 40.0% | |
| ATTGAATGTGATGTAGGGGA+AGG | + | chr1_4:50347900-50347919 | None:intergenic | 40.0% | |
| ! | TAAGAAGCATGATGTTAGCC+TGG | - | chr1_4:50348254-50348273 | Msa0168090:intron | 40.0% |
| GGAAGGCTTATGTCATTATG+TGG | - | chr1_4:50348308-50348327 | Msa0168090:intron | 40.0% | |
| CACATTACATAGAACGGATG+AGG | + | chr1_4:50348341-50348360 | None:intergenic | 40.0% | |
| ! | TAACGAATTTGGAGTTGAGG+GGG | - | chr1_4:50348687-50348706 | Msa0168090:intron | 40.0% |
| TGTGCAAAGGAATCAAGCTT+TGG | + | chr1_4:50348736-50348755 | None:intergenic | 40.0% | |
| ! | AGAATGGATTCGATGTGCAA+AGG | + | chr1_4:50348749-50348768 | None:intergenic | 40.0% |
| CATCGAATCCATTCTCAAGT+TGG | - | chr1_4:50348754-50348773 | Msa0168090:intron | 40.0% | |
| GTTGAAAGCCAACTTGAGAA+TGG | + | chr1_4:50348765-50348784 | None:intergenic | 40.0% | |
| GAGAGACTAACATCAATCTC+TGG | + | chr1_4:50348790-50348809 | None:intergenic | 40.0% | |
| ACTAATCCAGTGTTACCTGA+AGG | + | chr1_4:50348910-50348929 | None:intergenic | 40.0% | |
| TGTAATATCCACTGGCATAC+CGG | + | chr1_4:50349100-50349119 | None:intergenic | 40.0% | |
| ATATGAAAAGAACCCCTCCA+AGG | + | chr1_4:50349335-50349354 | None:intergenic | 40.0% | |
| ! | GGAGGGGTTCTTTTCATATT+CGG | - | chr1_4:50349336-50349355 | Msa0168090:intron | 40.0% |
| ATATCACTCCTTGCAGAACA+TGG | - | chr1_4:50349643-50349662 | Msa0168090:intron | 40.0% | |
| AAAAAGAGCCATGTTCTGCA+AGG | + | chr1_4:50349654-50349673 | None:intergenic | 40.0% | |
| ! | TTGCAGAACATGGCTCTTTT+TGG | - | chr1_4:50349653-50349672 | Msa0168090:intron | 40.0% |
| ! | CTTTGGTTGTCTTCTAGGAA+TGG | + | chr1_4:50349711-50349730 | None:intergenic | 40.0% |
| TCCTAGAAGACAACCAAAGA+AGG | - | chr1_4:50349712-50349731 | Msa0168090:intron | 40.0% | |
| !! | CTCTCTTCAAAGAGTGTCTT+GGG | - | chr1_4:50349775-50349794 | Msa0168090:intron | 40.0% |
| AACGGATACAATGAAGAACC+AGG | + | chr1_4:50349807-50349826 | None:intergenic | 40.0% | |
| AAACCTGGATGATCGAAGAA+CGG | + | chr1_4:50349825-50349844 | None:intergenic | 40.0% | |
| !! | TTTCGACTTGGTATACTCTC+TGG | - | chr1_4:50349842-50349861 | Msa0168090:intron | 40.0% |
| ATGAATGTTAGCACGGCTTT+AGG | - | chr1_4:50349963-50349982 | Msa0168090:intron | 40.0% | |
| CTTAATTAGACTTTGGCCCA+AGG | - | chr1_4:50350101-50350120 | Msa0168090:exon | 40.0% | |
| !! | AAAGCAGCCATTTTCATGGA+AGG | + | chr1_4:50350152-50350171 | None:intergenic | 40.0% |
| !! | TTGGAAAGCAGCCATTTTCA+TGG | + | chr1_4:50350156-50350175 | None:intergenic | 40.0% |
| TAAACATTCCGTGAGCAACT+TGG | + | chr1_4:50350175-50350194 | None:intergenic | 40.0% | |
| AGTTGCTCACGGAATGTTTA+TGG | - | chr1_4:50350175-50350194 | Msa0168090:five_prime_UTR | 40.0% | |
| GAAGAGAACTCTTCCGAGAA+AGG | + | chr1_4:50346814-50346833 | None:intergenic | 45.0% | |
| CTAGGGATATGCTCCTCTAT+AGG | - | chr1_4:50347209-50347228 | Msa0168090:CDS | 45.0% | |
| GTTCCATTCCTCCGTGTATT+GGG | - | chr1_4:50347238-50347257 | Msa0168090:intron | 45.0% | |
| ! | GTATGGACTGACCCAATACA+CGG | + | chr1_4:50347252-50347271 | None:intergenic | 45.0% |
| GTATTGGGTCAGTCCATACA+AGG | - | chr1_4:50347253-50347272 | Msa0168090:intron | 45.0% | |
| GCTCAAGTACCATCTAATCC+GGG | + | chr1_4:50347326-50347345 | None:intergenic | 45.0% | |
| GGATTAGATGGTACTTGAGC+AGG | - | chr1_4:50347326-50347345 | Msa0168090:intron | 45.0% | |
| GGATATGGTATGTGGTTCGT+TGG | - | chr1_4:50347554-50347573 | Msa0168090:CDS | 45.0% | |
| GGTAACATTGAATTCAGGGG+TGG | - | chr1_4:50347654-50347673 | Msa0168090:intron | 45.0% | |
| TGCGGTGATTTAGTGTTAGC+GGG | + | chr1_4:50347822-50347841 | None:intergenic | 45.0% | |
| GTGCGGTGATTTAGTGTTAG+CGG | + | chr1_4:50347823-50347842 | None:intergenic | 45.0% | |
| GTCTATTGGTCAAACCACCT+TGG | - | chr1_4:50347930-50347949 | Msa0168090:intron | 45.0% | |
| ! | AACGAATTTGGAGTTGAGGG+GGG | - | chr1_4:50348688-50348707 | Msa0168090:intron | 45.0% |
| ATCTGTCCTTCAGGTAACAC+TGG | - | chr1_4:50348901-50348920 | Msa0168090:intron | 45.0% | |
| GCCTTCTTTGGTTGTCTTCT+AGG | + | chr1_4:50349716-50349735 | None:intergenic | 45.0% | |
| ! | CCAAGACACTCTTTGAAGAG+AGG | + | chr1_4:50349777-50349796 | None:intergenic | 45.0% |
| !! | CCTCTCTTCAAAGAGTGTCT+TGG | - | chr1_4:50349774-50349793 | Msa0168090:intron | 45.0% |
| TATCCGTTCTTCGATCATCC+AGG | - | chr1_4:50349819-50349838 | Msa0168090:intron | 45.0% | |
| GAGTATACCAAGTCGAAACC+TGG | + | chr1_4:50349840-50349859 | None:intergenic | 45.0% | |
| ! | GATTTCGTTGTGGGTTGACC+CGG | - | chr1_4:50347177-50347196 | Msa0168090:CDS | 50.0% |
| ATATCCCTAGTCCACACCAC+CGG | + | chr1_4:50347199-50347218 | None:intergenic | 50.0% | |
| GGTTCCATTCCTCCGTGTAT+TGG | - | chr1_4:50347237-50347256 | Msa0168090:intron | 50.0% | |
| TGACCCAATACACGGAGGAA+TGG | + | chr1_4:50347244-50347263 | None:intergenic | 50.0% | |
| GTTTCAATTGGGCCTGCTAG+TGG | - | chr1_4:50347286-50347305 | Msa0168090:intron | 50.0% | |
| TAATCCTAGCGTCCACTAGC+AGG | + | chr1_4:50347301-50347320 | None:intergenic | 50.0% | |
| GTGGACGCTAGGATTAATCC+CGG | - | chr1_4:50347305-50347324 | Msa0168090:intron | 50.0% | |
| TTATGGACCTAGTGCCAAGG+TGG | + | chr1_4:50347947-50347966 | None:intergenic | 50.0% | |
| AGCTTATGGACCTAGTGCCA+AGG | + | chr1_4:50347950-50347969 | None:intergenic | 50.0% | |
| ATGAAGAGAGAACCGCTGTC+AGG | + | chr1_4:50348602-50348621 | None:intergenic | 50.0% | |
| ! | GGTTTCAGTGCTGTTGCAGA+AGG | + | chr1_4:50348715-50348734 | None:intergenic | 50.0% |
| TACAAGAGCTGTGCCTCGTT+CGG | - | chr1_4:50349031-50349050 | Msa0168090:intron | 50.0% | |
| TGAAAAGACCGGTATGCCAG+TGG | - | chr1_4:50349089-50349108 | Msa0168090:intron | 50.0% | |
| TACTGGGGCTATTGCTCTGA+AGG | - | chr1_4:50349308-50349327 | Msa0168090:intron | 50.0% | |
| ! | ACTGGGGCTATTGCTCTGAA+GGG | - | chr1_4:50349309-50349328 | Msa0168090:intron | 50.0% |
| CAATTGCAACAATGGCGCAC+AGG | + | chr1_4:50349615-50349634 | None:intergenic | 50.0% | |
| ! | GAGTGTCTTGGGTTGTTTCC+TGG | - | chr1_4:50349786-50349805 | Msa0168090:intron | 50.0% |
| CGATCATCCAGGTTTCGACT+TGG | - | chr1_4:50349830-50349849 | Msa0168090:intron | 50.0% | |
| ! | GCTGCTTTCCAAGTTGCTCA+CGG | - | chr1_4:50350164-50350183 | Msa0168090:five_prime_UTR | 50.0% |
| TATCCCTAGTCCACACCACC+GGG | + | chr1_4:50347198-50347217 | None:intergenic | 55.0% | |
| TGGACTGACCCAATACACGG+AGG | + | chr1_4:50347249-50347268 | None:intergenic | 55.0% | |
| GGTCAAACCACCTTGGCACT+AGG | - | chr1_4:50347937-50347956 | Msa0168090:intron | 55.0% | |
| !! | GCTATTGCTCTGAAGGGCCT+TGG | - | chr1_4:50349315-50349334 | Msa0168090:intron | 55.0% |
| !! | ATTGCTCTGAAGGGCCTTGG+AGG | - | chr1_4:50349318-50349337 | Msa0168090:intron | 55.0% |
| !! | TTGCTCTGAAGGGCCTTGGA+GGG | - | chr1_4:50349319-50349338 | Msa0168090:intron | 55.0% |
| CTCTTTCGGAGCTTTGCTGC+TGG | - | chr1_4:50349362-50349381 | Msa0168090:intron | 55.0% | |
| ! | TTCGTTGTGGGTTGACCCGG+TGG | - | chr1_4:50347180-50347199 | Msa0168090:CDS | 60.0% |
| TTGACCCGGTGGTGTGGACT+AGG | - | chr1_4:50347191-50347210 | Msa0168090:CDS | 60.0% | |
| ! | TGACCCGGTGGTGTGGACTA+GGG | - | chr1_4:50347192-50347211 | Msa0168090:CDS | 60.0% |
| !! | TGCTCTGAAGGGCCTTGGAG+GGG | - | chr1_4:50349320-50349339 | Msa0168090:intron | 60.0% |
| ! | TGTGGGTTGACCCGGTGGTG+TGG | - | chr1_4:50347185-50347204 | Msa0168090:CDS | 65.0% |
| ! | TGGGCCTGCTAGTGGACGCT+AGG | - | chr1_4:50347294-50347313 | Msa0168090:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 50346606 | 50350293 | 50346606 | ID=Msa0168090;Name=Msa0168090 |
| chr1_4 | mRNA | 50346606 | 50350293 | 50346606 | ID=Msa0168090-mRNA-1;Parent=Msa0168090;Name=Msa0168090-mRNA-1;_AED=0.08;_eAED=0.08;_QI=192|1|1|1|1|1|5|536|156 |
| chr1_4 | exon | 50346606 | 50347240 | 50346606 | ID=Msa0168090-mRNA-1:exon:14846;Parent=Msa0168090-mRNA-1 |
| chr1_4 | exon | 50347330 | 50347428 | 50347330 | ID=Msa0168090-mRNA-1:exon:14845;Parent=Msa0168090-mRNA-1 |
| chr1_4 | exon | 50347516 | 50347605 | 50347516 | ID=Msa0168090-mRNA-1:exon:14844;Parent=Msa0168090-mRNA-1 |
| chr1_4 | exon | 50348101 | 50348215 | 50348101 | ID=Msa0168090-mRNA-1:exon:14843;Parent=Msa0168090-mRNA-1 |
| chr1_4 | exon | 50350034 | 50350293 | 50350034 | ID=Msa0168090-mRNA-1:exon:14842;Parent=Msa0168090-mRNA-1 |
| chr1_4 | five_prime_UTR | 50350102 | 50350293 | 50350102 | ID=Msa0168090-mRNA-1:five_prime_utr;Parent=Msa0168090-mRNA-1 |
| chr1_4 | CDS | 50350034 | 50350101 | 50350034 | ID=Msa0168090-mRNA-1:cds;Parent=Msa0168090-mRNA-1 |
| chr1_4 | CDS | 50348101 | 50348215 | 50348101 | ID=Msa0168090-mRNA-1:cds;Parent=Msa0168090-mRNA-1 |
| chr1_4 | CDS | 50347516 | 50347605 | 50347516 | ID=Msa0168090-mRNA-1:cds;Parent=Msa0168090-mRNA-1 |
| chr1_4 | CDS | 50347330 | 50347428 | 50347330 | ID=Msa0168090-mRNA-1:cds;Parent=Msa0168090-mRNA-1 |
| chr1_4 | CDS | 50347142 | 50347240 | 50347142 | ID=Msa0168090-mRNA-1:cds;Parent=Msa0168090-mRNA-1 |
| chr1_4 | three_prime_UTR | 50346606 | 50347141 | 50346606 | ID=Msa0168090-mRNA-1:three_prime_utr;Parent=Msa0168090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
