AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1432480


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1432480 MtrunA17_Chr1g0184251 98.947 95 1 0 90 184 62 156 7.44e-62 189
Msa1432480 MtrunA17_Chr7g0261051 84.706 85 13 0 90 174 62 146 1.35e-46 150
Msa1432480 MtrunA17_Chr1g0186541 57.895 95 39 1 90 183 65 159 1.00e-29 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1432480 AT4G14420.1 66.667 96 30 1 90 183 62 157 1.35e-30 109
Msa1432480 AT1G04340.1 51.020 98 45 1 89 183 61 158 5.49e-27 100
Msa1432480 AT5G43460.2 49.038 104 49 2 84 183 50 153 5.77e-27 100
Msa1432480 AT5G43460.1 49.038 104 49 2 84 183 50 153 5.77e-27 100
Msa1432480 AT3G23180.1 44.615 65 36 0 88 152 64 128 3.97e-11 60.1
Msa1432480 AT3G23180.2 44.615 65 36 0 88 152 64 128 3.97e-11 60.1

Find 55 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACTCTCAGATTAAATTAT+TGG 0.150404 tig0027109:+7606 Msa1432480:three_prime_UTR
GCCTTCTTTGGTTGTCTTCT+AGG 0.155377 tig0027109:-7411 None:intergenic
AGTTGCTCACAGAATGTTTA+TGG 0.162742 tig0027109:+7873 Msa1432480:three_prime_UTR
CAGAATGTTTATGGAGTAAT+TGG 0.234474 tig0027109:+7882 Msa1432480:three_prime_UTR
TTTAATGCCTTCCATGAAAA+TGG 0.240041 tig0027109:+7840 Msa1432480:three_prime_UTR
CAGATTAAACTTGTAATTAC+TGG 0.264664 tig0027109:+6990 Msa1432480:intron
AACTTCAACTGTAATGAAAT+TGG 0.280224 tig0027109:-7769 None:intergenic
TTCATATTCGGAAGCTCTTT+CGG 0.294913 tig0027109:+7047 Msa1432480:CDS
ATGAATGTTAGCACGGCTTT+AGG 0.321521 tig0027109:+7663 Msa1432480:three_prime_UTR
GTAAGCAGAGAGAATGAAAA+TGG 0.336820 tig0027109:-4470 None:intergenic
GAGTGTCTTGGGTTGTTTCC+CGG 0.342407 tig0027109:+7484 Msa1432480:three_prime_UTR
AGATCTCCTTTGGTGACAAC+TGG 0.347501 tig0027109:-4234 None:intergenic
CTCTTTCGGAGCTTTGCTGC+TGG 0.368078 tig0027109:+7061 Msa1432480:CDS
CTCTCTTTAAAGAGTGTCTT+GGG 0.368433 tig0027109:+7473 Msa1432480:three_prime_UTR
ATGGCTTTCTCTTCCTTTCT+CGG 0.374329 tig0027109:+4430 Msa1432480:CDS
GCTATTGCTCTGAAGGGCCT+TGG 0.375035 tig0027109:+7014 Msa1432480:CDS
TGAAAGCTCGAGATCTCCTT+TGG 0.385683 tig0027109:-4244 None:intergenic
ATTGCTCTGAAGGGCCTTGG+AGG 0.394581 tig0027109:+7017 Msa1432480:CDS
GAACGGATACAATGAAGAAC+CGG 0.416490 tig0027109:-7503 None:intergenic
CTTTGGTTGTCTTCTAGGAA+TGG 0.422045 tig0027109:-7406 None:intergenic
CTAAGAAGAAGAGGAAATCT+AGG 0.425677 tig0027109:-4383 None:intergenic
CATTTCACTTAATTAGACTT+TGG 0.431464 tig0027109:+7794 Msa1432480:three_prime_UTR
CAAAGTCTAATTAAGTGAAA+TGG 0.452918 tig0027109:-7793 None:intergenic
TTTCAAGTGGTGAAAACAAA+AGG 0.457127 tig0027109:+7713 Msa1432480:three_prime_UTR
TTTCGACTTGGTATACTCTC+TGG 0.460788 tig0027109:+7540 Msa1432480:three_prime_UTR
TTGCTCTGAAGGGCCTTGGA+GGG 0.470152 tig0027109:+7018 Msa1432480:CDS
TGCTCTGAAGGGCCTTGGAG+GGG 0.472119 tig0027109:+7019 Msa1432480:CDS
GAAAGAGAGAAAGAAGAGAA+AGG 0.474091 tig0027109:-4320 None:intergenic
AGATTAAACTTGTAATTACT+GGG 0.475430 tig0027109:+6991 Msa1432480:intron
CCTCTCTTTAAAGAGTGTCT+TGG 0.480914 tig0027109:+7472 Msa1432480:three_prime_UTR
TACTGGGGCTATTGCTCTGA+AGG 0.491768 tig0027109:+7007 Msa1432480:CDS
CGATCATCCAGGTTTCGACT+TGG 0.499500 tig0027109:+7528 Msa1432480:three_prime_UTR
TAAACATTCTGTGAGCAACT+TGG 0.505006 tig0027109:-7870 None:intergenic
TATCCGTTCTTCGATCATCC+AGG 0.510967 tig0027109:+7517 Msa1432480:three_prime_UTR
GAAGAGAACTCTTCCGAGAA+AGG 0.515382 tig0027109:-4443 None:intergenic
TCCTAGAAGACAACCAAAGA+AGG 0.517286 tig0027109:+7410 Msa1432480:CDS
GAGTATACCAAGTCGAAACC+TGG 0.519243 tig0027109:-7535 None:intergenic
TCTTTGTTGCTAAGAAGAAG+AGG 0.535447 tig0027109:-4392 None:intergenic
TCTTCTTCTTAGCAACAAAG+AGG 0.548813 tig0027109:+4394 Msa1432480:CDS
CTTAATTAGACTTTGGCCCA+AGG 0.550656 tig0027109:+7801 Msa1432480:three_prime_UTR
TGCTAAACTTGTGTTTCAAG+TGG 0.565849 tig0027109:+7700 Msa1432480:three_prime_UTR
AAATTAAAGAGGGATGATGA+TGG 0.573224 tig0027109:-4275 None:intergenic
GATCTCCTTTGGTGACAACT+GGG 0.578357 tig0027109:-4233 None:intergenic
TAAGAAGAAGAGGAAATCTA+GGG 0.602304 tig0027109:-4382 None:intergenic
CCAATAATTTAATCTGAGAG+TGG 0.604044 tig0027109:-7606 None:intergenic
TGGTGTGTTAAAATATAGAG+TGG 0.607760 tig0027109:+7902 Msa1432480:three_prime_UTR
ACTGGGGCTATTGCTCTGAA+GGG 0.616718 tig0027109:+7008 Msa1432480:CDS
AGATGCCCAGTTGTCACCAA+AGG 0.626337 tig0027109:+4228 None:intergenic
CCAAGACACTCTTTAAAGAG+AGG 0.648321 tig0027109:-7472 None:intergenic
ATATGAAAAGAACCCCTCCA+AGG 0.650548 tig0027109:-7031 None:intergenic
AAGAGGAACAACAACAACAA+TGG 0.655419 tig0027109:+4411 Msa1432480:CDS
TCTGAAGTTTAAGAACGCAA+AGG 0.659301 tig0027109:-7743 None:intergenic
AACGGATACAATGAAGAACC+GGG 0.660077 tig0027109:-7502 None:intergenic
AAACCTGGATGATCGAAGAA+CGG 0.662085 tig0027109:-7520 None:intergenic
GATTAAACTTGTAATTACTG+GGG 0.669590 tig0027109:+6992 Msa1432480:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTTTTGAAATTAAAGA+GGG - tig0027109:4288-4307 None:intergenic 10.0%
!!! AATATTTTTTGAAATTAAAG+AGG - tig0027109:4289-4308 None:intergenic 10.0%
!! AAAAAAAAAGGAAAATTAAA+CGG - tig0027109:4537-4556 None:intergenic 10.0%
!! AAACAGAAATAAAAAAAAAA+AGG - tig0027109:4549-4568 None:intergenic 10.0%
!! ATATTCATATTATTAAACAA+CGG + tig0027109:5291-5310 Msa1432480:intron 10.0%
!! TTTAAACCTTAAAAACATAA+CGG + tig0027109:4700-4719 Msa1432480:intron 15.0%
!!! TTTATGGTATTGAATTTTAT+AGG + tig0027109:5082-5101 Msa1432480:intron 15.0%
!! TATTCATATTATTAAACAAC+GGG + tig0027109:5292-5311 Msa1432480:intron 15.0%
!! TGAACAATTATAATATCAAA+TGG - tig0027109:6219-6238 None:intergenic 15.0%
!!! ATCTAATATGTTTTTGTTTT+TGG - tig0027109:7438-7457 None:intergenic 15.0%
!! CAAATAGAAATCAATAAAGA+AGG - tig0027109:4512-4531 None:intergenic 20.0%
!!! TATTCTTTTTCCTATAGATT+TGG + tig0027109:4600-4619 Msa1432480:intron 20.0%
!!! AGTAAAAACATAACTTGTTA+AGG - tig0027109:4735-4754 None:intergenic 20.0%
!!! TGCTTTCGTTTAATTTTTTA+TGG + tig0027109:5066-5085 Msa1432480:intron 20.0%
!! ATTGACTATATGGTTATTAT+CGG + tig0027109:5236-5255 Msa1432480:intron 20.0%
!! ACAATTTACAGTATATTGTT+AGG - tig0027109:5636-5655 None:intergenic 20.0%
!!! AAGTTTTCAATCACTTAAAA+TGG - tig0027109:5825-5844 None:intergenic 20.0%
!! ATGCTTCTTATATAAAAGAA+TGG - tig0027109:5904-5923 None:intergenic 20.0%
!! ATTCAGTAAGAATTAAAACA+TGG - tig0027109:6043-6062 None:intergenic 20.0%
!! TTCACTAAAGCATAAAAATA+GGG - tig0027109:6286-6305 None:intergenic 20.0%
!! CTATATAGATATAACGAATT+TGG + tig0027109:6336-6355 Msa1432480:intron 20.0%
!!! TAATTTGTGATGAAATTGTA+TGG - tig0027109:6675-6694 None:intergenic 20.0%
!! TTAAGTTAAATTGAAAAGAC+CGG + tig0027109:6777-6796 Msa1432480:intron 20.0%
!! AATGCAAAAAAGTTAACAAA+TGG - tig0027109:6825-6844 None:intergenic 20.0%
!!! TTTCATTTTTTATTCCAGAT+CGG - tig0027109:6870-6889 None:intergenic 20.0%
!! ATAGAAAATAATGAGCAAAA+GGG - tig0027109:6937-6956 None:intergenic 20.0%
!! AGATTAAACTTGTAATTACT+GGG + tig0027109:6991-7010 Msa1432480:intron 20.0%
!! TTGTAAAAATCATAACGAAT+TGG - tig0027109:7196-7215 None:intergenic 20.0%
! TAGAAATCAATAAAGAAGGA+AGG - tig0027109:4508-4527 None:intergenic 25.0%
! ATTTCAACAACCAAATCTAT+AGG - tig0027109:4613-4632 None:intergenic 25.0%
!! TTTTACTCAGTTAAAGTGTA+AGG + tig0027109:4748-4767 Msa1432480:intron 25.0%
!! AGAAATAAAAAGCATGAATC+TGG - tig0027109:4776-4795 None:intergenic 25.0%
! TAAACATAGTGTACTACAAT+TGG - tig0027109:5511-5530 None:intergenic 25.0%
! AAATATTGAATGTGATGTAG+GGG - tig0027109:5563-5582 None:intergenic 25.0%
! GAAATATTGAATGTGATGTA+GGG - tig0027109:5564-5583 None:intergenic 25.0%
! AGAAATATTGAATGTGATGT+AGG - tig0027109:5565-5584 None:intergenic 25.0%
! TATTGTTAGGAAATAGCTTA+TGG - tig0027109:5623-5642 None:intergenic 25.0%
! AAACATGCAATAACTACTTA+TGG + tig0027109:5689-5708 Msa1432480:intron 25.0%
! CTAATTATGGAAACAAAAGT+AGG + tig0027109:5739-5758 Msa1432480:intron 25.0%
! GTAGGTAGTATTTAATGAAA+TGG + tig0027109:5757-5776 Msa1432480:intron 25.0%
! AATGGAAAACACTGTATATA+TGG + tig0027109:5775-5794 Msa1432480:intron 25.0%
! AACAATAGAAAAAGTTTACC+AGG - tig0027109:5935-5954 None:intergenic 25.0%
! TAATAGCACATTACATAGAA+CGG - tig0027109:6007-6026 None:intergenic 25.0%
! TTATTTAATAATCCTGACAG+CGG + tig0027109:6247-6266 Msa1432480:intron 25.0%
! TCACTAAAGCATAAAAATAG+GGG - tig0027109:6285-6304 None:intergenic 25.0%
! CTTCACTAAAGCATAAAAAT+AGG - tig0027109:6287-6306 None:intergenic 25.0%
! TATGGCACAAATATTTATTG+TGG - tig0027109:6657-6676 None:intergenic 25.0%
!! TTATTATTCTTTTCCGAACA+AGG - tig0027109:6746-6765 None:intergenic 25.0%
! TTGTTCGGAAAAGAATAATA+AGG + tig0027109:6745-6764 Msa1432480:intron 25.0%
! CATAGAAAATAATGAGCAAA+AGG - tig0027109:6938-6957 None:intergenic 25.0%
! ACATCACATCAGTTATATTA+GGG - tig0027109:6969-6988 None:intergenic 25.0%
! CAGATTAAACTTGTAATTAC+TGG + tig0027109:6990-7009 Msa1432480:intron 25.0%
! GATTAAACTTGTAATTACTG+GGG + tig0027109:6992-7011 Msa1432480:intron 25.0%
!! TTTTTACAATTATGACAACG+AGG + tig0027109:7207-7226 Msa1432480:CDS 25.0%
!! ACTTTTCATCAAATTTACAC+AGG + tig0027109:7246-7265 Msa1432480:CDS 25.0%
!! TTTTTGTATGAATGTTAGCA+CGG + tig0027109:7656-7675 Msa1432480:three_prime_UTR 25.0%
! AACTTCAACTGTAATGAAAT+TGG - tig0027109:7772-7791 None:intergenic 25.0%
! CAAAGTCTAATTAAGTGAAA+TGG - tig0027109:7796-7815 None:intergenic 25.0%
! CATTTCACTTAATTAGACTT+TGG + tig0027109:7794-7813 Msa1432480:three_prime_UTR 25.0%
AAATTAAAGAGGGATGATGA+TGG - tig0027109:4278-4297 None:intergenic 30.0%
TAAGAAGAAGAGGAAATCTA+GGG - tig0027109:4385-4404 None:intergenic 30.0%
!! TTGGATCCGTTATGTTTTTA+AGG - tig0027109:4709-4728 None:intergenic 30.0%
!! ACATAACTTGTTAAGGTTGT+TGG - tig0027109:4728-4747 None:intergenic 30.0%
! GCTTTACTCTAGTTTCAATT+GGG + tig0027109:4930-4949 Msa1432480:intron 30.0%
! AACTGTTGCAAATCTTTTGT+AGG + tig0027109:5115-5134 Msa1432480:intron 30.0%
TCAATACAGAAGAAAATGCA+AGG - tig0027109:5149-5168 None:intergenic 30.0%
!! AATAATTTTGCTATAGCTGC+TGG + tig0027109:5174-5193 Msa1432480:intron 30.0%
TATTCTTTCTTGTCTGGATA+TGG + tig0027109:5198-5217 Msa1432480:intron 30.0%
!! ATTGTGCATGAATGTTTTTG+AGG + tig0027109:5368-5387 Msa1432480:intron 30.0%
TTGCATGAATTGTAAATGCA+TGG + tig0027109:5404-5423 Msa1432480:intron 30.0%
TTGTAAATGCATGGATATGA+TGG + tig0027109:5413-5432 Msa1432480:intron 30.0%
!! AACTTTGTTATTAGGAACTG+AGG - tig0027109:5449-5468 None:intergenic 30.0%
TCCTAATAACAAAGTTGCTT+TGG + tig0027109:5453-5472 Msa1432480:intron 30.0%
!! ACCAAAGCAACTTTGTTATT+AGG - tig0027109:5457-5476 None:intergenic 30.0%
!! CAATATTTCTAGCAGTCTAT+TGG + tig0027109:5575-5594 Msa1432480:intron 30.0%
TCCATTCAGAACACTAATTA+TGG + tig0027109:5726-5745 Msa1432480:intron 30.0%
! TCCATAATTAGTGTTCTGAA+TGG - tig0027109:5730-5749 None:intergenic 30.0%
!! CTATTGTTGAATTTTTGAGC+TGG + tig0027109:5947-5966 Msa1432480:intron 30.0%
TAAGAATTAAAACATGGCCA+AGG - tig0027109:6037-6056 None:intergenic 30.0%
GCTGTCAGGATTATTAAATA+AGG - tig0027109:6248-6267 None:intergenic 30.0%
! ATATAACGAATTTGGAGTTG+AGG + tig0027109:6344-6363 Msa1432480:intron 30.0%
! TATAACGAATTTGGAGTTGA+GGG + tig0027109:6345-6364 Msa1432480:intron 30.0%
AGCTCTTGTACTTTATTGAA+GGG - tig0027109:6720-6739 None:intergenic 30.0%
GGAAAAGAATAATAAGGACA+AGG + tig0027109:6751-6770 Msa1432480:intron 30.0%
AAAGAATAATAAGGACAAGG+TGG + tig0027109:6754-6773 Msa1432480:intron 30.0%
CACATCACATCAGTTATATT+AGG - tig0027109:6970-6989 None:intergenic 30.0%
TCAATAAGCAATTGCAACAA+TGG - tig0027109:7321-7340 None:intergenic 30.0%
!!! GAGCTTTGTTGTTTTTCATT+GGG + tig0027109:7373-7392 Msa1432480:CDS 30.0%
CCAATAATTTAATCTGAGAG+TGG - tig0027109:7609-7628 None:intergenic 30.0%
CCACTCTCAGATTAAATTAT+TGG + tig0027109:7606-7625 Msa1432480:three_prime_UTR 30.0%
! TTTCAAGTGGTGAAAACAAA+AGG + tig0027109:7713-7732 Msa1432480:three_prime_UTR 30.0%
CAGAGAAAAAAAAAAGCCTT+GGG - tig0027109:7820-7839 None:intergenic 30.0%
ACAGAGAAAAAAAAAAGCCT+TGG - tig0027109:7821-7840 None:intergenic 30.0%
TTTAATGCCTTCCATGAAAA+TGG + tig0027109:7840-7859 Msa1432480:three_prime_UTR 30.0%
CAGAATGTTTATGGAGTAAT+TGG + tig0027109:7882-7901 Msa1432480:three_prime_UTR 30.0%
TGGTGTGTTAAAATATAGAG+TGG + tig0027109:7902-7921 Msa1432480:three_prime_UTR 30.0%
GAAAGAGAGAAAGAAGAGAA+AGG - tig0027109:4323-4342 None:intergenic 35.0%
CTAAGAAGAAGAGGAAATCT+AGG - tig0027109:4386-4405 None:intergenic 35.0%
TCTTTGTTGCTAAGAAGAAG+AGG - tig0027109:4395-4414 None:intergenic 35.0%
TCTTCTTCTTAGCAACAAAG+AGG + tig0027109:4394-4413 Msa1432480:CDS 35.0%
AAGAGGAACAACAACAACAA+TGG + tig0027109:4411-4430 Msa1432480:CDS 35.0%
GTAAGCAGAGAGAATGAAAA+TGG - tig0027109:4473-4492 None:intergenic 35.0%
! TCAAACGATTGATTTCGTTG+TGG + tig0027109:4822-4841 Msa1432480:intron 35.0%
! CAAACGATTGATTTCGTTGT+GGG + tig0027109:4823-4842 Msa1432480:intron 35.0%
AACTAGAGTAAAGCCTTCTA+TGG - tig0027109:4924-4943 None:intergenic 35.0%
! GGCTTTACTCTAGTTTCAAT+TGG + tig0027109:4929-4948 Msa1432480:intron 35.0%
!!! GCTTTTTTCTACCGTAAACT+CGG - tig0027109:5010-5029 None:intergenic 35.0%
!!! AGCGATTAAGTTGCTTTTCT+AGG + tig0027109:5030-5049 Msa1432480:intron 35.0%
! TAACATGTTAGCTTGGCATA+GGG + tig0027109:5260-5279 Msa1432480:intron 35.0%
AACGGGTAACATTGAATTCA+GGG + tig0027109:5309-5328 Msa1432480:intron 35.0%
! ACTACAATTGGTTCATTGTG+CGG - tig0027109:5499-5518 None:intergenic 35.0%
TGTTTCTTAACCAGTGCATT+TGG + tig0027109:5862-5881 Msa1432480:intron 35.0%
TAATAGATGTCCAAATGCAC+TGG - tig0027109:5875-5894 None:intergenic 35.0%
!! TGTTGAATTTTTGAGCTGGA+AGG + tig0027109:5951-5970 Msa1432480:intron 35.0%
! TGTGCTATTATACATTGCCT+TGG + tig0027109:6017-6036 Msa1432480:intron 35.0%
! ACTTTTGCAGACACAGATAA+TGG - tig0027109:6136-6155 None:intergenic 35.0%
TAGCATTGCACTTTATAAGC+TGG + tig0027109:6165-6184 Msa1432480:intron 35.0%
! ATAACGAATTTGGAGTTGAG+GGG + tig0027109:6346-6365 Msa1432480:intron 35.0%
AAAAACATGATCTGTCCTTC+AGG + tig0027109:6592-6611 Msa1432480:intron 35.0%
CAGCTCTTGTACTTTATTGA+AGG - tig0027109:6721-6740 None:intergenic 35.0%
ATTATGCTAAATTGCCGATC+TGG + tig0027109:6853-6872 Msa1432480:intron 35.0%
GAAAATAATGAGCAAAAGGG+AGG - tig0027109:6934-6953 None:intergenic 35.0%
TCAGTTATATTAGGGAACAC+TGG - tig0027109:6961-6980 None:intergenic 35.0%
TTCATATTCGGAAGCTCTTT+CGG + tig0027109:7047-7066 Msa1432480:CDS 35.0%
! TGGTTTGTCAGATTCTCTAT+TGG + tig0027109:7081-7100 Msa1432480:intron 35.0%
CTGAGCAAATGAGATGAATA+TGG - tig0027109:7110-7129 None:intergenic 35.0%
!!! GGAGCTTTGTTGTTTTTCAT+TGG + tig0027109:7372-7391 Msa1432480:CDS 35.0%
!!! TTTGTTTTTGGAGCCTTCTT+TGG - tig0027109:7426-7445 None:intergenic 35.0%
!! CTCTCTTTAAAGAGTGTCTT+GGG + tig0027109:7473-7492 Msa1432480:three_prime_UTR 35.0%
TGCTAAACTTGTGTTTCAAG+TGG + tig0027109:7700-7719 Msa1432480:three_prime_UTR 35.0%
! TCTGAAGTTTAAGAACGCAA+AGG - tig0027109:7746-7765 None:intergenic 35.0%
TAAACATTCTGTGAGCAACT+TGG - tig0027109:7873-7892 None:intergenic 35.0%
AGTTGCTCACAGAATGTTTA+TGG + tig0027109:7873-7892 Msa1432480:three_prime_UTR 35.0%
ATGGCTTTCTCTTCCTTTCT+CGG + tig0027109:4430-4449 Msa1432480:CDS 40.0%
AGAAGGAAGGAACTAACTCT+TGG - tig0027109:4495-4514 None:intergenic 40.0%
TATGCTCCTCTATAGGTATG+AGG + tig0027109:4871-4890 Msa1432480:intron 40.0%
ATGGAACCTCATACCTATAG+AGG - tig0027109:4880-4899 None:intergenic 40.0%
! AGGATTAATCCCGGATTAGA+TGG + tig0027109:4969-4988 Msa1432480:intron 40.0%
TGCTCAAGTACCATCTAATC+CGG - tig0027109:4982-5001 None:intergenic 40.0%
GCTGGTTATTCTTTCTTGTC+TGG + tig0027109:5192-5211 Msa1432480:intron 40.0%
TCTTGTCTGGATATGGTATG+TGG + tig0027109:5205-5224 Msa1432480:intron 40.0%
GGTTCGTTGGATTGACTATA+TGG + tig0027109:5226-5245 Msa1432480:intron 40.0%
! TATCGGCTAACATGTTAGCT+TGG + tig0027109:5253-5272 Msa1432480:intron 40.0%
! CTAACATGTTAGCTTGGCAT+AGG + tig0027109:5259-5278 Msa1432480:intron 40.0%
CAACGGGTAACATTGAATTC+AGG + tig0027109:5308-5327 Msa1432480:intron 40.0%
ACGGGTAACATTGAATTCAG+GGG + tig0027109:5310-5329 Msa1432480:intron 40.0%
!! GTGCATGAATGTTTTTGAGG+AGG + tig0027109:5371-5390 Msa1432480:intron 40.0%
ATTAGGAACTGAGGAGTTTG+TGG - tig0027109:5440-5459 None:intergenic 40.0%
ATTGAATGTGATGTAGGGGA+AGG - tig0027109:5559-5578 None:intergenic 40.0%
! TAAGAAGCATGATGTTAGCC+TGG + tig0027109:5914-5933 Msa1432480:intron 40.0%
GGAAGGCTTATGTCATTATG+TGG + tig0027109:5968-5987 Msa1432480:intron 40.0%
CACATTACATAGAACGGATG+AGG - tig0027109:6001-6020 None:intergenic 40.0%
! TAACGAATTTGGAGTTGAGG+GGG + tig0027109:6347-6366 Msa1432480:intron 40.0%
TGTGCAAAGGAATCAAGCTT+TGG - tig0027109:6396-6415 None:intergenic 40.0%
! AGAATGGATTCGATGTGCAA+AGG - tig0027109:6409-6428 None:intergenic 40.0%
CATCGAATCCATTCTCAAGT+TGG + tig0027109:6414-6433 Msa1432480:intron 40.0%
GTTGAAAGCCAACTTGAGAA+TGG - tig0027109:6425-6444 None:intergenic 40.0%
GAGAGACTAACATCAATCTC+TGG - tig0027109:6450-6469 None:intergenic 40.0%
ACTAATCCAGTGTTACCTGA+AGG - tig0027109:6610-6629 None:intergenic 40.0%
AATGGACATGCAATATCCAC+TGG - tig0027109:6807-6826 None:intergenic 40.0%
ATATGAAAAGAACCCCTCCA+AGG - tig0027109:7034-7053 None:intergenic 40.0%
! GGAGGGGTTCTTTTCATATT+CGG + tig0027109:7035-7054 Msa1432480:CDS 40.0%
ATATCACTCCTTGCAGAACA+TGG + tig0027109:7341-7360 Msa1432480:intron 40.0%
AAAAAGAGCCATGTTCTGCA+AGG - tig0027109:7352-7371 None:intergenic 40.0%
! TTGCAGAACATGGCTCTTTT+TGG + tig0027109:7351-7370 Msa1432480:intron 40.0%
! CTTTGGTTGTCTTCTAGGAA+TGG - tig0027109:7409-7428 None:intergenic 40.0%
TCCTAGAAGACAACCAAAGA+AGG + tig0027109:7410-7429 Msa1432480:CDS 40.0%
! CCAAGACACTCTTTAAAGAG+AGG - tig0027109:7475-7494 None:intergenic 40.0%
!! CCTCTCTTTAAAGAGTGTCT+TGG + tig0027109:7472-7491 Msa1432480:three_prime_UTR 40.0%
AACGGATACAATGAAGAACC+GGG - tig0027109:7505-7524 None:intergenic 40.0%
GAACGGATACAATGAAGAAC+CGG - tig0027109:7506-7525 None:intergenic 40.0%
AAACCTGGATGATCGAAGAA+CGG - tig0027109:7523-7542 None:intergenic 40.0%
!! TTTCGACTTGGTATACTCTC+TGG + tig0027109:7540-7559 Msa1432480:three_prime_UTR 40.0%
ATGAATGTTAGCACGGCTTT+AGG + tig0027109:7663-7682 Msa1432480:three_prime_UTR 40.0%
CTTAATTAGACTTTGGCCCA+AGG + tig0027109:7801-7820 Msa1432480:three_prime_UTR 40.0%
!! AAAGCAGCCATTTTCATGGA+AGG - tig0027109:7850-7869 None:intergenic 40.0%
!! TTGGAAAGCAGCCATTTTCA+TGG - tig0027109:7854-7873 None:intergenic 40.0%
! GATCTCCTTTGGTGACAACT+GGG - tig0027109:4236-4255 None:intergenic 45.0%
! AGATCTCCTTTGGTGACAAC+TGG - tig0027109:4237-4256 None:intergenic 45.0%
TGAAAGCTCGAGATCTCCTT+TGG - tig0027109:4247-4266 None:intergenic 45.0%
GAAGAGAACTCTTCCGAGAA+AGG - tig0027109:4446-4465 None:intergenic 45.0%
CTAGGGATATGCTCCTCTAT+AGG + tig0027109:4864-4883 Msa1432480:intron 45.0%
GTTCCATTCCTCCGTGTATT+GGG + tig0027109:4893-4912 Msa1432480:intron 45.0%
! CTATGGACTGACCCAATACA+CGG - tig0027109:4907-4926 None:intergenic 45.0%
GTATTGGGTCAGTCCATAGA+AGG + tig0027109:4908-4927 Msa1432480:intron 45.0%
GCTCAAGTACCATCTAATCC+GGG - tig0027109:4981-5000 None:intergenic 45.0%
GGATTAGATGGTACTTGAGC+AGG + tig0027109:4981-5000 Msa1432480:intron 45.0%
TGAGCAGGATACCGAGTTTA+CGG + tig0027109:4996-5015 Msa1432480:intron 45.0%
GGATATGGTATGTGGTTCGT+TGG + tig0027109:5213-5232 Msa1432480:intron 45.0%
GGTAACATTGAATTCAGGGG+TGG + tig0027109:5313-5332 Msa1432480:intron 45.0%
TGCGGTGATTTAGTGTTAGC+GGG - tig0027109:5481-5500 None:intergenic 45.0%
GTGCGGTGATTTAGTGTTAG+CGG - tig0027109:5482-5501 None:intergenic 45.0%
GTCTATTGGTCAAACCACCT+TGG + tig0027109:5589-5608 Msa1432480:intron 45.0%
! AACGAATTTGGAGTTGAGGG+GGG + tig0027109:6348-6367 Msa1432480:intron 45.0%
ATCTGTCCTTCAGGTAACAC+TGG + tig0027109:6601-6620 Msa1432480:intron 45.0%
! TACAAGAGCTGTGCCTTGTT+CGG + tig0027109:6730-6749 Msa1432480:intron 45.0%
TGCAATATCCACTGGCATAC+CGG - tig0027109:6799-6818 None:intergenic 45.0%
GCCTTCTTTGGTTGTCTTCT+AGG - tig0027109:7414-7433 None:intergenic 45.0%
TATCCGTTCTTCGATCATCC+AGG + tig0027109:7517-7536 Msa1432480:three_prime_UTR 45.0%
GAGTATACCAAGTCGAAACC+TGG - tig0027109:7538-7557 None:intergenic 45.0%
! GATTTCGTTGTGGGTTGACC+TGG + tig0027109:4832-4851 Msa1432480:intron 50.0%
!! TTGACCTGGTGGTGTTGACT+AGG + tig0027109:4846-4865 Msa1432480:intron 50.0%
!! TGACCTGGTGGTGTTGACTA+GGG + tig0027109:4847-4866 Msa1432480:intron 50.0%
TATCCCTAGTCAACACCACC+AGG - tig0027109:4853-4872 None:intergenic 50.0%
GGTTCCATTCCTCCGTGTAT+TGG + tig0027109:4892-4911 Msa1432480:intron 50.0%
TGACCCAATACACGGAGGAA+TGG - tig0027109:4899-4918 None:intergenic 50.0%
GTTTCAATTGGGCCTGCTAG+TGG + tig0027109:4941-4960 Msa1432480:intron 50.0%
TAATCCTAGCGTCCACTAGC+AGG - tig0027109:4956-4975 None:intergenic 50.0%
GTGGACGCTAGGATTAATCC+CGG + tig0027109:4960-4979 Msa1432480:intron 50.0%
TTATGGACCTAGTGCCAAGG+TGG - tig0027109:5606-5625 None:intergenic 50.0%
AGCTTATGGACCTAGTGCCA+AGG - tig0027109:5609-5628 None:intergenic 50.0%
ATGAAGAGAGAACCGCTGTC+AGG - tig0027109:6262-6281 None:intergenic 50.0%
! GGTTTCAGTGCTGTTGCAGA+AGG - tig0027109:6375-6394 None:intergenic 50.0%
TGAAAAGACCGGTATGCCAG+TGG + tig0027109:6788-6807 Msa1432480:intron 50.0%
TACTGGGGCTATTGCTCTGA+AGG + tig0027109:7007-7026 Msa1432480:CDS 50.0%
! ACTGGGGCTATTGCTCTGAA+GGG + tig0027109:7008-7027 Msa1432480:CDS 50.0%
CAATTGCAACAATGGCGCAC+AGG - tig0027109:7313-7332 None:intergenic 50.0%
! GAGTGTCTTGGGTTGTTTCC+CGG + tig0027109:7484-7503 Msa1432480:three_prime_UTR 50.0%
CGATCATCCAGGTTTCGACT+TGG + tig0027109:7528-7547 Msa1432480:three_prime_UTR 50.0%
! TTCGTTGTGGGTTGACCTGG+TGG + tig0027109:4835-4854 Msa1432480:intron 55.0%
TGGACTGACCCAATACACGG+AGG - tig0027109:4904-4923 None:intergenic 55.0%
GGTCAAACCACCTTGGCACT+AGG + tig0027109:5596-5615 Msa1432480:intron 55.0%
!! GCTATTGCTCTGAAGGGCCT+TGG + tig0027109:7014-7033 Msa1432480:CDS 55.0%
!! ATTGCTCTGAAGGGCCTTGG+AGG + tig0027109:7017-7036 Msa1432480:CDS 55.0%
!! TTGCTCTGAAGGGCCTTGGA+GGG + tig0027109:7018-7037 Msa1432480:CDS 55.0%
CTCTTTCGGAGCTTTGCTGC+TGG + tig0027109:7061-7080 Msa1432480:CDS 55.0%
!! TGCTCTGAAGGGCCTTGGAG+GGG + tig0027109:7019-7038 Msa1432480:CDS 60.0%
! TGGGCCTGCTAGTGGACGCT+AGG + tig0027109:4949-4968 Msa1432480:intron 65.0%
Chromosome Type Strat End Strand Name
tig0027109 gene 4231 7991 4231 ID=Msa1432480;Name=Msa1432480
tig0027109 mRNA 4231 7991 4231 ID=Msa1432480-mRNA-1;Parent=Msa1432480;Name=Msa1432480-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.66|1|1|0.66|1|4|536|184
tig0027109 exon 4231 4497 4231 ID=Msa1432480-mRNA-1:exon:8122;Parent=Msa1432480-mRNA-1
tig0027109 exon 6993 7082 6993 ID=Msa1432480-mRNA-1:exon:8123;Parent=Msa1432480-mRNA-1
tig0027109 exon 7169 7267 7169 ID=Msa1432480-mRNA-1:exon:8124;Parent=Msa1432480-mRNA-1
tig0027109 exon 7357 7991 7357 ID=Msa1432480-mRNA-1:exon:8125;Parent=Msa1432480-mRNA-1
tig0027109 CDS 4231 4497 4231 ID=Msa1432480-mRNA-1:cds;Parent=Msa1432480-mRNA-1
tig0027109 CDS 6993 7082 6993 ID=Msa1432480-mRNA-1:cds;Parent=Msa1432480-mRNA-1
tig0027109 CDS 7169 7267 7169 ID=Msa1432480-mRNA-1:cds;Parent=Msa1432480-mRNA-1
tig0027109 CDS 7357 7455 7357 ID=Msa1432480-mRNA-1:cds;Parent=Msa1432480-mRNA-1
tig0027109 three_prime_UTR 7456 7991 7456 ID=Msa1432480-mRNA-1:three_prime_utr;Parent=Msa1432480-mRNA-1
Gene Sequence

>Msa1432480

TGCCCAGTTGTCACCAAAGGAGATCTCGAGCTTTCAAAATCATACCATCATCATCCCTCTTTAATTTCAAAAAATATTACTATTTATTTCCTTTCTCTTCTTTCTCTCTTTCTATTCTATTCACAAAAAGAAACAACATTTTCACACTTCACCCTAGATTTCCTCTTCTTCTTAGCAACAAAGAGGAACAACAACAACAATGGCTTTCTCTTCCTTTCTCGGAAGAGTTCTCTTCGCTTCCATTTTCATTCTCTCTGCTTACCAAGAATTAAACTTGTAATTACTGGGGCTATTGCTCTGAAGGGCCTTGGAGGGGTTCTTTTCATATTCGGAAGCTCTTTCGGAGCTTTGCTGCTGCTTCTGCATCAGTTGATTGCTACTCCAATTCGTTATGATTTTTACAATTATGACAACGAGGACAAAGAATTTACTCAACTTTTCATCAAATTTACACAGAACATGGCTCTTTTTGGAGCTTTGTTGTTTTTCATTGGGATGAAAAACTCCATTCCTAGAAGACAACCAAAGAAGGCTCCAAAAACAAAAACATATTAG

Protein sequence

>Msa1432480

CPVVTKGDLELSKSYHHHPSLISKNITIYFLSLLSLFLFYSQKETTFSHFTLDFLFFLATKRNNNNNGFLFLSRKSSLRFHFHSLCLPRIKLVITGAIALKGLGGVLFIFGSSFGALLLLLHQLIATPIRYDFYNYDNEDKEFTQLFIKFTQNMALFGALLFFIGMKNSIPRRQPKKAPKTKTY*