AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0547370


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0547370 MtrunA17_Chr4g0029341 94.037 218 13 0 5 222 1 218 7.42e-154 425
Msa0547370 MtrunA17_Chr1g0196661 68.837 215 67 0 8 222 3 217 3.81e-112 320
Msa0547370 MtrunA17_Chr1g0196721 67.290 214 70 0 9 222 3 216 6.37e-107 306
Msa0547370 MtrunA17_Chr1g0196691 64.126 223 78 2 1 222 22 243 6.72e-105 303
Msa0547370 MtrunA17_Chr1g0196711 66.047 215 73 0 8 222 3 217 3.39e-103 297
Msa0547370 MtrunA17_Chr1g0212301 49.302 215 105 3 5 217 1 213 5.24e-67 205
Msa0547370 MtrunA17_Chr1g0196771 48.341 211 108 1 7 217 2 211 8.33e-67 205
Msa0547370 MtrunA17_Chr4g0008791 44.495 218 117 2 2 218 1 215 2.27e-62 194
Msa0547370 MtrunA17_Chr4g0008781 46.083 217 113 3 7 222 7 220 3.88e-61 191
Msa0547370 MtrunA17_Chr7g0240641 46.948 213 109 2 7 218 6 215 4.08e-60 188
Msa0547370 MtrunA17_Chr7g0240511 45.370 216 109 3 7 221 6 213 1.98e-58 184
Msa0547370 MtrunA17_Chr7g0240631 44.601 213 114 2 7 218 6 215 4.18e-58 183
Msa0547370 MtrunA17_Chr7g0240691 43.925 214 115 2 7 218 36 246 4.40e-58 184
Msa0547370 MtrunA17_Chr7g0240681 44.393 214 114 2 7 218 6 216 1.92e-57 181
Msa0547370 MtrunA17_Chr3g0132581 45.070 213 113 3 7 218 4 213 2.67e-57 181
Msa0547370 MtrunA17_Chr5g0417011 44.091 220 117 4 6 220 5 223 8.67e-57 179
Msa0547370 MtrunA17_Chr7g0240561 42.523 214 117 3 7 218 6 215 4.29e-56 178
Msa0547370 MtrunA17_Chr8g0379581 44.651 215 113 2 6 218 3 213 1.06e-54 174
Msa0547370 MtrunA17_Chr2g0312771 44.091 220 116 4 5 222 1 215 4.38e-53 170
Msa0547370 MtrunA17_Chr2g0312721 42.254 213 118 3 5 216 1 209 2.14e-52 168
Msa0547370 MtrunA17_Chr2g0312751 44.393 214 112 4 5 216 1 209 3.12e-52 168
Msa0547370 MtrunA17_Chr8g0379561 45.946 222 111 5 5 222 2 218 3.81e-52 167
Msa0547370 MtrunA17_Chr7g0240541 42.056 214 118 4 7 218 6 215 5.12e-52 167
Msa0547370 MtrunA17_Chr7g0240581 39.437 213 125 2 7 218 6 215 1.99e-51 166
Msa0547370 MtrunA17_Chr6g0483141 43.939 198 105 3 22 217 17 210 3.01e-51 165
Msa0547370 MtrunA17_Chr8g0363751 43.578 218 115 6 9 219 6 222 1.13e-50 164
Msa0547370 MtrunA17_Chr7g0240611 40.376 213 119 3 7 218 6 211 1.57e-50 163
Msa0547370 MtrunA17_Chr7g0240551 40.376 213 123 2 7 218 6 215 2.16e-50 163
Msa0547370 MtrunA17_Chr7g0240671 41.395 215 116 4 5 217 1 207 3.68e-50 162
Msa0547370 MtrunA17_Chr2g0312791 42.793 222 118 6 5 222 1 217 1.58e-49 161
Msa0547370 MtrunA17_Chr7g0240531 40.845 213 122 2 7 218 6 215 1.74e-49 161
Msa0547370 MtrunA17_Chr7g0240661 41.475 217 119 3 2 217 1 210 3.14e-49 160
Msa0547370 MtrunA17_Chr2g0312731 40.670 209 119 3 5 212 1 205 3.49e-48 157
Msa0547370 MtrunA17_Chr2g0312781 41.784 213 117 4 2 212 15 222 5.26e-48 157
Msa0547370 MtrunA17_Chr7g0240521 43.256 215 115 5 7 218 13 223 1.94e-47 156
Msa0547370 MtrunA17_Chr2g0312811 41.204 216 118 5 5 216 1 211 2.89e-47 155
Msa0547370 MtrunA17_Chr7g0240651 39.906 213 120 3 7 218 6 211 5.98e-45 149
Msa0547370 MtrunA17_Chr8g0357241 39.906 213 123 3 5 216 1 209 1.49e-44 148
Msa0547370 MtrunA17_Chr3g0107731 39.819 221 128 3 3 222 4 220 2.71e-44 147
Msa0547370 MtrunA17_Chr8g0357211 39.437 213 124 3 5 216 1 209 1.54e-43 145
Msa0547370 MtrunA17_Chr3g0107741 39.631 217 126 3 7 222 8 220 8.66e-43 144
Msa0547370 MtrunA17_Chr2g0312681 38.426 216 128 3 5 219 1 212 1.79e-42 143
Msa0547370 MtrunA17_Chr2g0312691 40.376 213 122 3 5 216 1 209 4.14e-42 142
Msa0547370 MtrunA17_Chr5g0415411 37.778 225 131 4 7 222 4 228 4.15e-42 142
Msa0547370 MtrunA17_Chr4g0069471 45.506 178 93 3 5 180 22 197 4.29e-42 141
Msa0547370 MtrunA17_Chr2g0312711 41.232 211 114 5 5 212 1 204 1.63e-40 137
Msa0547370 MtrunA17_Chr5g0433801 36.279 215 132 3 3 216 1 211 2.02e-38 132
Msa0547370 MtrunA17_Chr8g0391631 43.478 161 82 7 3 156 17 175 1.31e-35 124
Msa0547370 MtrunA17_Chr2g0313561 60.714 56 21 1 52 106 2 57 1.71e-19 79.3
Msa0547370 MtrunA17_Chr5g0415421 44.595 74 38 1 32 102 11 84 3.88e-12 61.2
Msa0547370 MtrunA17_Chr4g0076681 28.436 211 133 6 11 210 18 221 5.15e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0547370 AT3G09270.1 45.581 215 113 3 7 219 5 217 3.95e-59 186
Msa0547370 AT2G29450.1 43.578 218 119 3 7 222 5 220 2.20e-56 179
Msa0547370 AT2G29460.1 43.318 217 120 2 7 222 6 220 6.25e-56 177
Msa0547370 AT2G29490.1 43.981 216 118 2 7 221 6 219 1.16e-55 177
Msa0547370 AT2G29470.1 44.292 219 116 5 7 222 6 221 6.04e-55 175
Msa0547370 AT1G10370.1 43.694 222 120 3 6 222 3 224 6.07e-55 175
Msa0547370 AT2G29420.1 40.092 217 128 1 6 222 7 221 1.78e-54 174
Msa0547370 AT2G29480.1 43.243 222 123 2 2 222 1 220 1.95e-54 174
Msa0547370 AT1G17180.1 41.096 219 124 3 5 222 1 215 2.30e-49 161
Msa0547370 AT2G29440.1 40.092 217 127 2 7 222 5 219 8.22e-49 159
Msa0547370 AT1G78340.1 41.981 212 118 3 5 215 1 208 2.52e-48 158
Msa0547370 AT1G74590.1 39.726 219 129 2 7 222 6 224 4.21e-48 158
Msa0547370 AT1G10360.1 41.176 221 125 3 7 222 4 224 1.09e-47 157
Msa0547370 AT1G27130.1 40.092 217 124 4 7 217 5 221 9.47e-47 154
Msa0547370 AT1G78320.1 40.566 212 117 6 5 213 1 206 2.29e-46 153
Msa0547370 AT1G78370.1 39.623 212 123 3 5 215 1 208 8.11e-46 152
Msa0547370 AT5G62480.1 36.245 229 131 5 4 221 4 228 1.60e-45 152
Msa0547370 AT1G59670.1 39.631 217 125 4 7 217 5 221 8.36e-45 149
Msa0547370 AT1G69930.1 37.156 218 133 3 4 217 8 225 5.33e-44 147
Msa0547370 AT1G78380.1 39.726 219 127 3 5 222 1 215 8.49e-44 146
Msa0547370 AT1G27140.1 39.462 223 128 4 7 222 5 227 2.05e-43 146
Msa0547370 AT1G17170.1 39.906 213 122 4 5 216 1 208 2.77e-43 145
Msa0547370 AT1G59700.1 37.327 217 130 4 7 217 5 221 3.17e-42 143
Msa0547370 AT1G17190.1 35.945 217 134 3 7 222 4 216 1.84e-41 140
Msa0547370 AT1G78360.1 37.850 214 127 4 5 216 1 210 3.90e-39 134
Msa0547370 AT1G53680.1 38.119 202 118 4 14 212 13 210 3.11e-38 132
Msa0547370 AT3G43800.1 38.182 220 127 5 7 221 4 219 1.96e-37 130
Msa0547370 AT1G69920.1 35.349 215 133 4 9 217 35 249 2.32e-37 131
Msa0547370 AT5G62480.3 29.825 228 120 5 4 221 4 201 1.89e-29 109
Msa0547370 AT5G62480.2 29.825 228 121 5 4 221 4 202 2.32e-29 109
Msa0547370 AT1G78320.2 32.701 211 108 6 5 213 1 179 9.21e-28 104

Find 48 sgRNAs with CRISPR-Local

Find 139 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGAGCCCAAGCTCGGTTC+TGG 0.280479 4_1:+40325292 Msa0547370:CDS
AGGAGACACCGTTAACATTC+TGG 0.299490 4_1:+40325755 Msa0547370:CDS
AAGTGAAGCTACATGGATTT+TGG 0.302285 4_1:+40325034 Msa0547370:CDS
AATACTACCCTCAAAGTAAA+AGG 0.302524 4_1:-40325063 None:intergenic
TGTCATACAAAAGTAGTTAT+AGG 0.314540 4_1:+40325956 Msa0547370:exon
ATACAAGCTACCCCTTTCTT+AGG 0.317809 4_1:-40325986 None:intergenic
AGAATACCATAGCGAAAATC+TGG 0.331408 4_1:+40325676 Msa0547370:CDS
GTATTGACCCTTAAGCTAAA+AGG 0.363440 4_1:+40325081 Msa0547370:CDS
TTGAATACATTGATGAGATA+TGG 0.380718 4_1:+40325235 Msa0547370:CDS
TATGTTACCAACCTAGGGTT+GGG 0.382533 4_1:+40326060 Msa0547370:three_prime_UTR
GTCATACAAAAGTAGTTATA+GGG 0.403210 4_1:+40325957 Msa0547370:exon
TCTTCTTCTATGTTCTCATA+TGG 0.416671 4_1:-40325108 None:intergenic
AACATTCTGGACATAGCTCT+TGG 0.422694 4_1:+40325768 Msa0547370:CDS
CTTCTTTATGTTACCAACCT+AGG 0.434614 4_1:+40326054 Msa0547370:three_prime_UTR
AGCTATGTCCAGAATGTTAA+CGG 0.440075 4_1:-40325763 None:intergenic
GCTATCAGTTTCTCATGATC+AGG 0.440168 4_1:-40325921 None:intergenic
GCTCTCTCATAAGGATCAAC+AGG 0.442610 4_1:-40325276 None:intergenic
CGAGCTTGGGCTCTCTCATA+AGG 0.459155 4_1:-40325285 None:intergenic
AATTCCCTCACTTGCATGCA+TGG 0.474769 4_1:+40325856 Msa0547370:CDS
TTCAAGAATGTACCTGTCAT+AGG 0.475029 4_1:+40325888 Msa0547370:CDS
TAGGGCATCTTCCTAAGAAA+GGG 0.476111 4_1:+40325975 Msa0547370:three_prime_UTR
ATAGGGCATCTTCCTAAGAA+AGG 0.483378 4_1:+40325974 Msa0547370:three_prime_UTR
GAGAGCCCAAGCTCGGTTCT+GGG 0.483641 4_1:+40325293 Msa0547370:CDS
TTCTTTATGTTACCAACCTA+GGG 0.487900 4_1:+40326055 Msa0547370:three_prime_UTR
ATAAGACAAATTAATTAAGA+TGG 0.490303 4_1:+40325005 None:intergenic
TTATGTTACCAACCTAGGGT+TGG 0.492593 4_1:+40326059 Msa0547370:three_prime_UTR
AAAGTAATAAAATGCTAAGA+TGG 0.497390 4_1:+40326102 Msa0547370:three_prime_UTR
GATTGTATTGAAGAAGTTGA+GGG 0.534705 4_1:-40325146 None:intergenic
TCAAACCATGCATGCAAGTG+AGG 0.535813 4_1:-40325861 None:intergenic
ACTCCAGTGTTAGTTCATGA+TGG 0.542419 4_1:+40325183 Msa0547370:CDS
TAAGGATCAACAGGAAGCAA+AGG 0.547066 4_1:-40325267 None:intergenic
AAGGATCAACAGGAAGCAAA+GGG 0.553758 4_1:-40325266 None:intergenic
GCAGATCAAGTGAAGCTACA+TGG 0.559561 4_1:+40325027 Msa0547370:CDS
TTTCCATCATGAACTAACAC+TGG 0.567459 4_1:-40325186 None:intergenic
GAGGGAATTTCTCAGCTGCT+AGG 0.567585 4_1:-40325842 None:intergenic
CAAACCATGCATGCAAGTGA+GGG 0.568010 4_1:-40325860 None:intergenic
GGATTGTATTGAAGAAGTTG+AGG 0.571991 4_1:-40325147 None:intergenic
CTAACGAGTGCACCAACTGC+AGG 0.579048 4_1:-40325630 None:intergenic
GAATACCATAGCGAAAATCT+GGG 0.582158 4_1:+40325677 Msa0547370:CDS
GGTGCACTCGTTAGTAGCGG+TGG 0.611355 4_1:+40325639 Msa0547370:CDS
AGACAAACCCAACCCTAGGT+TGG 0.615575 4_1:-40326067 None:intergenic
CTTATGAGAGAGCCCAAGCT+CGG 0.617875 4_1:+40325286 Msa0547370:CDS
AGCTAGACAAACCCAACCCT+AGG 0.627118 4_1:-40326071 None:intergenic
ATGATCATAGACTCACATAG+AGG 0.640551 4_1:-40325210 None:intergenic
GTAGCGGTGGCGATGAAGAG+CGG 0.649339 4_1:+40325652 Msa0547370:CDS
AGGGCATCTTCCTAAGAAAG+GGG 0.661151 4_1:+40325976 Msa0547370:three_prime_UTR
GTTGGTGCACTCGTTAGTAG+CGG 0.664719 4_1:+40325636 Msa0547370:CDS
ACAGGAAGCAAAGGGTACTG+TGG 0.666663 4_1:-40325258 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTAATCAACATATTATTT+AGG + chr4_1:40325446-40325465 Msa0547370:intron 10.0%
!! TTATCATATTGAATAAATTT+AGG - chr4_1:40325566-40325585 None:intergenic 10.0%
!! ATTTAATCAACATATTATTT+AGG + chr4_1:40325446-40325465 Msa0547370:intron 10.0%
!! TTATCATATTGAATAAATTT+AGG - chr4_1:40325566-40325585 None:intergenic 10.0%
!!! AAATTACTATTACTTTTTCA+TGG - chr4_1:40325383-40325402 None:intergenic 15.0%
!! AATAATAATATTGTTGGATA+TGG - chr4_1:40325523-40325542 None:intergenic 15.0%
!!! AAATTACTATTACTTTTTCA+TGG - chr4_1:40325383-40325402 None:intergenic 15.0%
!! AATAATAATATTGTTGGATA+TGG - chr4_1:40325523-40325542 None:intergenic 15.0%
!! AAAGTAATAAAATGCTAAGA+TGG + chr4_1:40326102-40326121 Msa0547370:three_prime_UTR 20.0%
! TTGAATACATTGATGAGATA+TGG + chr4_1:40325235-40325254 Msa0547370:CDS 25.0%
! CTAAGAAAATTTGCAAATGA+AGG - chr4_1:40325485-40325504 None:intergenic 25.0%
! TGTCATACAAAAGTAGTTAT+AGG + chr4_1:40325956-40325975 Msa0547370:exon 25.0%
! GTCATACAAAAGTAGTTATA+GGG + chr4_1:40325957-40325976 Msa0547370:exon 25.0%
! TTGAATACATTGATGAGATA+TGG + chr4_1:40325235-40325254 Msa0547370:CDS 25.0%
! CTAAGAAAATTTGCAAATGA+AGG - chr4_1:40325485-40325504 None:intergenic 25.0%
! TGTCATACAAAAGTAGTTAT+AGG + chr4_1:40325956-40325975 Msa0547370:exon 25.0%
! GTCATACAAAAGTAGTTATA+GGG + chr4_1:40325957-40325976 Msa0547370:exon 25.0%
AATACTACCCTCAAAGTAAA+AGG - chr4_1:40325066-40325085 None:intergenic 30.0%
!!! TGGTATACCTTTTAGCTTAA+GGG - chr4_1:40325091-40325110 None:intergenic 30.0%
!!! ATGGTATACCTTTTAGCTTA+AGG - chr4_1:40325092-40325111 None:intergenic 30.0%
TCTTCTTCTATGTTCTCATA+TGG - chr4_1:40325111-40325130 None:intergenic 30.0%
GATTGTATTGAAGAAGTTGA+GGG - chr4_1:40325149-40325168 None:intergenic 30.0%
! TTTTCATGGTATGCAAATGA+AGG - chr4_1:40325369-40325388 None:intergenic 30.0%
! TTTTTATAGATTCCTGCAGT+TGG + chr4_1:40325618-40325637 Msa0547370:intron 30.0%
! GAAACTGATAGCTTTTATGA+AGG + chr4_1:40325932-40325951 Msa0547370:CDS 30.0%
TTCTTTATGTTACCAACCTA+GGG + chr4_1:40326055-40326074 Msa0547370:three_prime_UTR 30.0%
AATACTACCCTCAAAGTAAA+AGG - chr4_1:40325066-40325085 None:intergenic 30.0%
!!! TGGTATACCTTTTAGCTTAA+GGG - chr4_1:40325091-40325110 None:intergenic 30.0%
!!! ATGGTATACCTTTTAGCTTA+AGG - chr4_1:40325092-40325111 None:intergenic 30.0%
TCTTCTTCTATGTTCTCATA+TGG - chr4_1:40325111-40325130 None:intergenic 30.0%
GATTGTATTGAAGAAGTTGA+GGG - chr4_1:40325149-40325168 None:intergenic 30.0%
! TTTTCATGGTATGCAAATGA+AGG - chr4_1:40325369-40325388 None:intergenic 30.0%
! TTTTTATAGATTCCTGCAGT+TGG + chr4_1:40325618-40325637 Msa0547370:intron 30.0%
! GAAACTGATAGCTTTTATGA+AGG + chr4_1:40325932-40325951 Msa0547370:CDS 30.0%
TTCTTTATGTTACCAACCTA+GGG + chr4_1:40326055-40326074 Msa0547370:three_prime_UTR 30.0%
! AAGTGAAGCTACATGGATTT+TGG + chr4_1:40325034-40325053 Msa0547370:CDS 35.0%
! GTACAGTCCTTTTACTTTGA+GGG + chr4_1:40325056-40325075 Msa0547370:CDS 35.0%
! GTATTGACCCTTAAGCTAAA+AGG + chr4_1:40325081-40325100 Msa0547370:CDS 35.0%
GGATTGTATTGAAGAAGTTG+AGG - chr4_1:40325150-40325169 None:intergenic 35.0%
TTTCCATCATGAACTAACAC+TGG - chr4_1:40325189-40325208 None:intergenic 35.0%
ATGATCATAGACTCACATAG+AGG - chr4_1:40325213-40325232 None:intergenic 35.0%
GGATATGGTATCAACTATCA+AGG - chr4_1:40325508-40325527 None:intergenic 35.0%
AGAATACCATAGCGAAAATC+TGG + chr4_1:40325676-40325695 Msa0547370:CDS 35.0%
GAATACCATAGCGAAAATCT+GGG + chr4_1:40325677-40325696 Msa0547370:CDS 35.0%
! GACTACGAGAAGAAACTTTT+TGG + chr4_1:40325732-40325751 Msa0547370:CDS 35.0%
! TACGAGAAGAAACTTTTTGG+AGG + chr4_1:40325735-40325754 Msa0547370:CDS 35.0%
AGCTATGTCCAGAATGTTAA+CGG - chr4_1:40325766-40325785 None:intergenic 35.0%
TTCAAGAATGTACCTGTCAT+AGG + chr4_1:40325888-40325907 Msa0547370:CDS 35.0%
CTTCTTTATGTTACCAACCT+AGG + chr4_1:40326054-40326073 Msa0547370:three_prime_UTR 35.0%
! AAGTGAAGCTACATGGATTT+TGG + chr4_1:40325034-40325053 Msa0547370:CDS 35.0%
! GTACAGTCCTTTTACTTTGA+GGG + chr4_1:40325056-40325075 Msa0547370:CDS 35.0%
! GTATTGACCCTTAAGCTAAA+AGG + chr4_1:40325081-40325100 Msa0547370:CDS 35.0%
GGATTGTATTGAAGAAGTTG+AGG - chr4_1:40325150-40325169 None:intergenic 35.0%
TTTCCATCATGAACTAACAC+TGG - chr4_1:40325189-40325208 None:intergenic 35.0%
ATGATCATAGACTCACATAG+AGG - chr4_1:40325213-40325232 None:intergenic 35.0%
GGATATGGTATCAACTATCA+AGG - chr4_1:40325508-40325527 None:intergenic 35.0%
AGAATACCATAGCGAAAATC+TGG + chr4_1:40325676-40325695 Msa0547370:CDS 35.0%
GAATACCATAGCGAAAATCT+GGG + chr4_1:40325677-40325696 Msa0547370:CDS 35.0%
! GACTACGAGAAGAAACTTTT+TGG + chr4_1:40325732-40325751 Msa0547370:CDS 35.0%
! TACGAGAAGAAACTTTTTGG+AGG + chr4_1:40325735-40325754 Msa0547370:CDS 35.0%
AGCTATGTCCAGAATGTTAA+CGG - chr4_1:40325766-40325785 None:intergenic 35.0%
TTCAAGAATGTACCTGTCAT+AGG + chr4_1:40325888-40325907 Msa0547370:CDS 35.0%
CTTCTTTATGTTACCAACCT+AGG + chr4_1:40326054-40326073 Msa0547370:three_prime_UTR 35.0%
! GGTACAGTCCTTTTACTTTG+AGG + chr4_1:40325055-40325074 Msa0547370:CDS 40.0%
ACTCCAGTGTTAGTTCATGA+TGG + chr4_1:40325183-40325202 Msa0547370:CDS 40.0%
AAGGATCAACAGGAAGCAAA+GGG - chr4_1:40325269-40325288 None:intergenic 40.0%
TAAGGATCAACAGGAAGCAA+AGG - chr4_1:40325270-40325289 None:intergenic 40.0%
! ATGTTCCCAGATTTTCGCTA+TGG - chr4_1:40325685-40325704 None:intergenic 40.0%
AACATTCTGGACATAGCTCT+TGG + chr4_1:40325768-40325787 Msa0547370:CDS 40.0%
! GGAAGATTTTCACCTATGAC+AGG - chr4_1:40325903-40325922 None:intergenic 40.0%
GCTATCAGTTTCTCATGATC+AGG - chr4_1:40325924-40325943 None:intergenic 40.0%
! ATAGGGCATCTTCCTAAGAA+AGG + chr4_1:40325974-40325993 Msa0547370:three_prime_UTR 40.0%
! TAGGGCATCTTCCTAAGAAA+GGG + chr4_1:40325975-40325994 Msa0547370:three_prime_UTR 40.0%
ATACAAGCTACCCCTTTCTT+AGG - chr4_1:40325989-40326008 None:intergenic 40.0%
TTATGTTACCAACCTAGGGT+TGG + chr4_1:40326059-40326078 Msa0547370:three_prime_UTR 40.0%
TATGTTACCAACCTAGGGTT+GGG + chr4_1:40326060-40326079 Msa0547370:three_prime_UTR 40.0%
! GGTACAGTCCTTTTACTTTG+AGG + chr4_1:40325055-40325074 Msa0547370:CDS 40.0%
ACTCCAGTGTTAGTTCATGA+TGG + chr4_1:40325183-40325202 Msa0547370:CDS 40.0%
AAGGATCAACAGGAAGCAAA+GGG - chr4_1:40325269-40325288 None:intergenic 40.0%
TAAGGATCAACAGGAAGCAA+AGG - chr4_1:40325270-40325289 None:intergenic 40.0%
! ATGTTCCCAGATTTTCGCTA+TGG - chr4_1:40325685-40325704 None:intergenic 40.0%
AACATTCTGGACATAGCTCT+TGG + chr4_1:40325768-40325787 Msa0547370:CDS 40.0%
! GGAAGATTTTCACCTATGAC+AGG - chr4_1:40325903-40325922 None:intergenic 40.0%
GCTATCAGTTTCTCATGATC+AGG - chr4_1:40325924-40325943 None:intergenic 40.0%
! ATAGGGCATCTTCCTAAGAA+AGG + chr4_1:40325974-40325993 Msa0547370:three_prime_UTR 40.0%
! TAGGGCATCTTCCTAAGAAA+GGG + chr4_1:40325975-40325994 Msa0547370:three_prime_UTR 40.0%
ATACAAGCTACCCCTTTCTT+AGG - chr4_1:40325989-40326008 None:intergenic 40.0%
TTATGTTACCAACCTAGGGT+TGG + chr4_1:40326059-40326078 Msa0547370:three_prime_UTR 40.0%
TATGTTACCAACCTAGGGTT+GGG + chr4_1:40326060-40326079 Msa0547370:three_prime_UTR 40.0%
GCAGATCAAGTGAAGCTACA+TGG + chr4_1:40325027-40325046 Msa0547370:CDS 45.0%
! ACTGGAGTTTTCTTGTGCAC+TGG - chr4_1:40325171-40325190 None:intergenic 45.0%
GCTCTCTCATAAGGATCAAC+AGG - chr4_1:40325279-40325298 None:intergenic 45.0%
! TTTTACCCAGAACCGAGCTT+GGG - chr4_1:40325301-40325320 None:intergenic 45.0%
! ATTTTACCCAGAACCGAGCT+TGG - chr4_1:40325302-40325321 None:intergenic 45.0%
AGGAGACACCGTTAACATTC+TGG + chr4_1:40325755-40325774 Msa0547370:CDS 45.0%
AATTCCCTCACTTGCATGCA+TGG + chr4_1:40325856-40325875 Msa0547370:CDS 45.0%
CAAACCATGCATGCAAGTGA+GGG - chr4_1:40325863-40325882 None:intergenic 45.0%
TCAAACCATGCATGCAAGTG+AGG - chr4_1:40325864-40325883 None:intergenic 45.0%
! AGGGCATCTTCCTAAGAAAG+GGG + chr4_1:40325976-40325995 Msa0547370:three_prime_UTR 45.0%
GCAGATCAAGTGAAGCTACA+TGG + chr4_1:40325027-40325046 Msa0547370:CDS 45.0%
! ACTGGAGTTTTCTTGTGCAC+TGG - chr4_1:40325171-40325190 None:intergenic 45.0%
GCTCTCTCATAAGGATCAAC+AGG - chr4_1:40325279-40325298 None:intergenic 45.0%
! TTTTACCCAGAACCGAGCTT+GGG - chr4_1:40325301-40325320 None:intergenic 45.0%
! ATTTTACCCAGAACCGAGCT+TGG - chr4_1:40325302-40325321 None:intergenic 45.0%
AGGAGACACCGTTAACATTC+TGG + chr4_1:40325755-40325774 Msa0547370:CDS 45.0%
AATTCCCTCACTTGCATGCA+TGG + chr4_1:40325856-40325875 Msa0547370:CDS 45.0%
CAAACCATGCATGCAAGTGA+GGG - chr4_1:40325863-40325882 None:intergenic 45.0%
TCAAACCATGCATGCAAGTG+AGG - chr4_1:40325864-40325883 None:intergenic 45.0%
! AGGGCATCTTCCTAAGAAAG+GGG + chr4_1:40325976-40325995 Msa0547370:three_prime_UTR 45.0%
!! AAAAAAAATAATAATATTGT+TGG - chr4_1:40325529-40325548 None:intergenic 5.0%
!! TAGTATTATAAATAATTTAT+TGG + chr4_1:40325590-40325609 Msa0547370:intron 5.0%
!! AGTATTATAAATAATTTATT+GGG + chr4_1:40325591-40325610 Msa0547370:intron 5.0%
!! AAAAAAAATAATAATATTGT+TGG - chr4_1:40325529-40325548 None:intergenic 5.0%
!! TAGTATTATAAATAATTTAT+TGG + chr4_1:40325590-40325609 Msa0547370:intron 5.0%
!! AGTATTATAAATAATTTATT+GGG + chr4_1:40325591-40325610 Msa0547370:intron 5.0%
!! ACAGGAAGCAAAGGGTACTG+TGG - chr4_1:40325261-40325280 None:intergenic 50.0%
CTTATGAGAGAGCCCAAGCT+CGG + chr4_1:40325286-40325305 Msa0547370:CDS 50.0%
GTTGGTGCACTCGTTAGTAG+CGG + chr4_1:40325636-40325655 Msa0547370:CDS 50.0%
GAGGGAATTTCTCAGCTGCT+AGG - chr4_1:40325845-40325864 None:intergenic 50.0%
AGACAAACCCAACCCTAGGT+TGG - chr4_1:40326070-40326089 None:intergenic 50.0%
AGCTAGACAAACCCAACCCT+AGG - chr4_1:40326074-40326093 None:intergenic 50.0%
!! ACAGGAAGCAAAGGGTACTG+TGG - chr4_1:40325261-40325280 None:intergenic 50.0%
CTTATGAGAGAGCCCAAGCT+CGG + chr4_1:40325286-40325305 Msa0547370:CDS 50.0%
GTTGGTGCACTCGTTAGTAG+CGG + chr4_1:40325636-40325655 Msa0547370:CDS 50.0%
GAGGGAATTTCTCAGCTGCT+AGG - chr4_1:40325845-40325864 None:intergenic 50.0%
AGACAAACCCAACCCTAGGT+TGG - chr4_1:40326070-40326089 None:intergenic 50.0%
AGCTAGACAAACCCAACCCT+AGG - chr4_1:40326074-40326093 None:intergenic 50.0%
CGAGCTTGGGCTCTCTCATA+AGG - chr4_1:40325288-40325307 None:intergenic 55.0%
CTAACGAGTGCACCAACTGC+AGG - chr4_1:40325633-40325652 None:intergenic 55.0%
CGAGCTTGGGCTCTCTCATA+AGG - chr4_1:40325288-40325307 None:intergenic 55.0%
CTAACGAGTGCACCAACTGC+AGG - chr4_1:40325633-40325652 None:intergenic 55.0%
AGAGAGCCCAAGCTCGGTTC+TGG + chr4_1:40325292-40325311 Msa0547370:CDS 60.0%
GAGAGCCCAAGCTCGGTTCT+GGG + chr4_1:40325293-40325312 Msa0547370:CDS 60.0%
GGTGCACTCGTTAGTAGCGG+TGG + chr4_1:40325639-40325658 Msa0547370:CDS 60.0%
GTAGCGGTGGCGATGAAGAG+CGG + chr4_1:40325652-40325671 Msa0547370:CDS 60.0%
AGAGAGCCCAAGCTCGGTTC+TGG + chr4_1:40325292-40325311 Msa0547370:CDS 60.0%
GAGAGCCCAAGCTCGGTTCT+GGG + chr4_1:40325293-40325312 Msa0547370:CDS 60.0%
GGTGCACTCGTTAGTAGCGG+TGG + chr4_1:40325639-40325658 Msa0547370:CDS 60.0%
GTAGCGGTGGCGATGAAGAG+CGG + chr4_1:40325652-40325671 Msa0547370:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 40325012 40326124 40325012 ID=Msa0547370;Name=Msa0547370
chr4_1 mRNA 40325012 40326124 40325012 ID=Msa0547370-mRNA-1;Parent=Msa0547370;Name=Msa0547370-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|1|0.5|1|1|1|2|153|222
chr4_1 exon 40325012 40325335 40325012 ID=Msa0547370-mRNA-1:exon:10302;Parent=Msa0547370-mRNA-1
chr4_1 exon 40325627 40326124 40325627 ID=Msa0547370-mRNA-1:exon:10303;Parent=Msa0547370-mRNA-1
chr4_1 CDS 40325012 40325335 40325012 ID=Msa0547370-mRNA-1:cds;Parent=Msa0547370-mRNA-1
chr4_1 CDS 40325627 40325971 40325627 ID=Msa0547370-mRNA-1:cds;Parent=Msa0547370-mRNA-1
chr4_1 three_prime_UTR 40325972 40326124 40325972 ID=Msa0547370-mRNA-1:three_prime_utr;Parent=Msa0547370-mRNA-1
Gene Sequence

>Msa0547370

AAATTAATTAAGATGGCAGATCAAGTGAAGCTACATGGATTTTGGTACAGTCCTTTTACTTTGAGGGTAGTATTGACCCTTAAGCTAAAAGGTATACCATATGAGAACATAGAAGAAGATCGTTTCAACAAGAGCCCTCAACTTCTTCAATACAATCCAGTGCACAAGAAAACTCCAGTGTTAGTTCATGATGGAAAACCTCTATGTGAGTCTATGATCATTGTTGAATACATTGATGAGATATGGCCACAGTACCCTTTGCTTCCTGTTGATCCTTATGAGAGAGCCCAAGCTCGGTTCTGGGTAAAATATGTTGATGACATTATTCCTGCAGTTGGTGCACTCGTTAGTAGCGGTGGCGATGAAGAGCGGAAGAATACCATAGCGAAAATCTGGGAACATCTTAGAGTTGTTGAAGAACAATGCATTGACTACGAGAAGAAACTTTTTGGAGGAGACACCGTTAACATTCTGGACATAGCTCTTGGATCAACTATCAAGTTTCTTGTAACTATTGAAGATATCATTGAATTTAAGATCCTAGCAGCTGAGAAATTCCCTCACTTGCATGCATGGTTTGAAAATTTCAAGAATGTACCTGTCATAGGTGAAAATCTTCCTGATCATGAGAAACTGATAGCTTTTATGAAGGCTGTCATACAAAAGTAG

Protein sequence

>Msa0547370

KLIKMADQVKLHGFWYSPFTLRVVLTLKLKGIPYENIEEDRFNKSPQLLQYNPVHKKTPVLVHDGKPLCESMIIVEYIDEIWPQYPLLPVDPYERAQARFWVKYVDDIIPAVGALVSSGGDEERKNTIAKIWEHLRVVEEQCIDYEKKLFGGDTVNILDIALGSTIKFLVTIEDIIEFKILAAEKFPHLHAWFENFKNVPVIGENLPDHEKLIAFMKAVIQK*