Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1327320 | XP_013455544.1 | 87.890 | 545 | 13 | 3 | 1 | 492 | 1 | 545 | 0.0 | 959 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1327320 | sp|Q9C5J4|Y3210_ARATH | 49.126 | 515 | 227 | 8 | 3 | 492 | 2 | 506 | 8.00e-155 | 453 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1327320 | A0A072UUN1 | 87.890 | 545 | 13 | 3 | 1 | 492 | 1 | 545 | 0.0 | 959 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0034310 | Msa1327320 | -0.814857 | 1.244000e-51 | -8.615850e-47 |
| Msa0081310 | Msa1327320 | -0.803105 | 4.084797e-49 | -8.615850e-47 |
| Msa0105340 | Msa1327320 | 0.803115 | 4.066036e-49 | -8.615850e-47 |
| Msa0631120 | Msa1327320 | 0.803275 | 3.767379e-49 | -8.615850e-47 |
| Msa0716450 | Msa1327320 | 0.825592 | 4.310293e-54 | -8.615850e-47 |
| Msa0799030 | Msa1327320 | 0.812372 | 4.383287e-51 | -8.615850e-47 |
| Msa0140780 | Msa1327320 | 0.827333 | 1.658154e-54 | -8.615850e-47 |
| Msa0191040 | Msa1327320 | 0.800511 | 1.392572e-48 | -8.615850e-47 |
| Msa0200260 | Msa1327320 | 0.801230 | 9.933027e-49 | -8.615850e-47 |
| Msa0203640 | Msa1327320 | 0.820708 | 5.946929e-53 | -8.615850e-47 |
| Msa0233340 | Msa1327320 | 0.800229 | 1.589423e-48 | -8.615850e-47 |
| Msa1228210 | Msa1327320 | 0.808136 | 3.591655e-50 | -8.615850e-47 |
| Msa1257870 | Msa1327320 | -0.803350 | 3.634652e-49 | -8.615850e-47 |
| Msa1271280 | Msa1327320 | 0.813574 | 2.389530e-51 | -8.615850e-47 |
| Msa1271300 | Msa1327320 | 0.817108 | 3.913086e-52 | -8.615850e-47 |
| Msa1327320 | Msa1355260 | 0.810251 | 1.264636e-50 | -8.615850e-47 |
| Msa1327320 | Msa1412760 | -0.812966 | 3.248688e-51 | -8.615850e-47 |
| Msa1327320 | Msa1449670 | -0.816945 | 4.256328e-52 | -8.615850e-47 |
| Msa1327320 | Msa1457670 | -0.803075 | 4.144027e-49 | -8.615850e-47 |
| Msa1327320 | Msa1460380 | 0.801121 | 1.045290e-48 | -8.615850e-47 |
| Msa0378340 | Msa1327320 | 0.807950 | 3.935563e-50 | -8.615850e-47 |
| Msa0426400 | Msa1327320 | 0.805075 | 1.590494e-49 | -8.615850e-47 |
| Msa0427690 | Msa1327320 | 0.810167 | 1.318748e-50 | -8.615850e-47 |
| Msa0465970 | Msa1327320 | 0.814063 | 1.864650e-51 | -8.615850e-47 |
| Msa0466060 | Msa1327320 | 0.801318 | 9.527239e-49 | -8.615850e-47 |
| Msa0467680 | Msa1327320 | 0.802073 | 6.670646e-49 | -8.615850e-47 |
| Msa0470560 | Msa1327320 | 0.806825 | 6.815574e-50 | -8.615850e-47 |
| Msa0981010 | Msa1327320 | 0.800946 | 1.135435e-48 | -8.615850e-47 |
| Msa1009000 | Msa1327320 | 0.802896 | 4.513655e-49 | -8.615850e-47 |
| Msa1055280 | Msa1327320 | 0.805783 | 1.129670e-49 | -8.615850e-47 |
| Msa1098560 | Msa1327320 | 0.831901 | 1.283811e-55 | -8.615850e-47 |
| Msa0309080 | Msa1327320 | -0.801488 | 8.792978e-49 | -8.615850e-47 |
| Msa0311690 | Msa1327320 | 0.801348 | 9.396270e-49 | -8.615850e-47 |
| Msa1170730 | Msa1327320 | 0.802876 | 4.557194e-49 | -8.615850e-47 |
| Msa1217810 | Msa1327320 | 0.816054 | 6.737368e-52 | -8.615850e-47 |
| Msa0489100 | Msa1327320 | 0.801264 | 9.774660e-49 | -8.615850e-47 |
| Msa0518520 | Msa1327320 | 0.808916 | 2.448466e-50 | -8.615850e-47 |
| Msa0534590 | Msa1327320 | 0.800890 | 1.165596e-48 | -8.615850e-47 |
| Msa0590800 | Msa1327320 | 0.801264 | 9.771714e-49 | -8.615850e-47 |
| Msa0865940 | Msa1327320 | -0.803125 | 4.046990e-49 | -8.615850e-47 |
| Msa0900200 | Msa1327320 | 0.810468 | 1.135737e-50 | -8.615850e-47 |
| Msa0965520 | Msa1327320 | 0.803466 | 3.439163e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1327320 | MtrunA17_Chr4g0023801 | 87.890 | 545 | 13 | 3 | 1 | 492 | 1 | 545 | 0.0 | 959 |
| Msa1327320 | MtrunA17_Chr4g0037661 | 32.909 | 550 | 299 | 15 | 6 | 491 | 5 | 548 | 9.06e-82 | 263 |
| Msa1327320 | MtrunA17_Chr1g0163311 | 33.771 | 533 | 278 | 14 | 5 | 474 | 4 | 524 | 2.13e-79 | 257 |
| Msa1327320 | MtrunA17_Chr2g0280541 | 40.123 | 324 | 182 | 5 | 75 | 391 | 3 | 321 | 3.24e-76 | 246 |
| Msa1327320 | MtrunA17_Chr2g0303541 | 30.969 | 423 | 244 | 10 | 14 | 392 | 35 | 453 | 4.95e-46 | 170 |
| Msa1327320 | MtrunA17_Chr2g0285511 | 26.157 | 562 | 302 | 18 | 14 | 485 | 35 | 573 | 2.63e-44 | 164 |
| Msa1327320 | MtrunA17_Chr8g0374011 | 33.333 | 390 | 208 | 12 | 48 | 392 | 82 | 464 | 3.35e-44 | 165 |
| Msa1327320 | MtrunA17_Chr7g0245201 | 31.019 | 432 | 241 | 15 | 5 | 392 | 49 | 467 | 3.15e-42 | 159 |
| Msa1327320 | MtrunA17_Chr2g0320691 | 29.002 | 431 | 251 | 14 | 7 | 392 | 26 | 446 | 7.63e-41 | 155 |
| Msa1327320 | MtrunA17_Chr1g0181181 | 27.896 | 423 | 233 | 15 | 14 | 392 | 35 | 429 | 2.53e-39 | 150 |
| Msa1327320 | MtrunA17_Chr1g0199631 | 30.637 | 408 | 226 | 13 | 29 | 392 | 14 | 408 | 1.09e-38 | 148 |
| Msa1327320 | MtrunA17_Chr4g0010091 | 28.537 | 410 | 245 | 12 | 17 | 392 | 46 | 441 | 1.03e-35 | 140 |
| Msa1327320 | MtrunA17_Chr2g0279481 | 26.444 | 450 | 256 | 11 | 14 | 392 | 53 | 498 | 4.12e-34 | 136 |
| Msa1327320 | MtrunA17_Chr4g0050021 | 26.407 | 462 | 247 | 14 | 7 | 392 | 47 | 491 | 5.68e-33 | 132 |
| Msa1327320 | MtrunA17_Chr5g0401451 | 27.952 | 415 | 252 | 16 | 11 | 392 | 43 | 443 | 3.80e-32 | 130 |
| Msa1327320 | MtrunA17_Chr4g0076521 | 28.947 | 380 | 227 | 14 | 40 | 391 | 60 | 424 | 1.95e-31 | 127 |
| Msa1327320 | MtrunA17_Chr1g0195911 | 26.667 | 420 | 258 | 12 | 7 | 391 | 39 | 443 | 1.57e-30 | 125 |
| Msa1327320 | MtrunA17_Chr5g0412591 | 27.027 | 407 | 198 | 14 | 48 | 392 | 70 | 439 | 2.94e-30 | 124 |
| Msa1327320 | MtrunA17_Chr7g0268781 | 27.229 | 415 | 253 | 11 | 14 | 391 | 45 | 447 | 6.95e-30 | 123 |
| Msa1327320 | MtrunA17_Chr1g0191711 | 25.823 | 395 | 247 | 11 | 14 | 392 | 67 | 431 | 2.89e-28 | 118 |
| Msa1327320 | MtrunA17_Chr1g0207461 | 26.486 | 370 | 236 | 11 | 52 | 391 | 74 | 437 | 4.57e-28 | 117 |
| Msa1327320 | MtrunA17_Chr4g0053841 | 27.160 | 405 | 258 | 12 | 14 | 392 | 22 | 415 | 6.26e-28 | 117 |
| Msa1327320 | MtrunA17_Chr8g0382231 | 23.919 | 393 | 221 | 10 | 50 | 392 | 97 | 461 | 1.87e-27 | 116 |
| Msa1327320 | MtrunA17_Chr5g0401341 | 26.087 | 414 | 253 | 12 | 14 | 391 | 36 | 432 | 1.93e-26 | 113 |
| Msa1327320 | MtrunA17_Chr3g0108331 | 23.851 | 457 | 283 | 13 | 14 | 437 | 33 | 457 | 3.78e-26 | 112 |
| Msa1327320 | MtrunA17_Chr1g0150191 | 25.245 | 408 | 269 | 10 | 14 | 391 | 36 | 437 | 8.87e-26 | 110 |
| Msa1327320 | MtrunA17_Chr5g0432861 | 24.221 | 417 | 246 | 11 | 14 | 391 | 34 | 419 | 6.48e-24 | 105 |
| Msa1327320 | MtrunA17_Chr2g0290741 | 26.835 | 395 | 225 | 16 | 50 | 415 | 70 | 429 | 1.16e-22 | 101 |
| Msa1327320 | MtrunA17_Chr8g0367891 | 24.433 | 397 | 228 | 12 | 43 | 392 | 63 | 434 | 1.79e-21 | 97.8 |
| Msa1327320 | MtrunA17_Chr2g0332281 | 37.681 | 138 | 84 | 2 | 257 | 392 | 106 | 243 | 2.69e-17 | 84.0 |
| Msa1327320 | MtrunA17_Chr4g0003891 | 36.232 | 138 | 86 | 2 | 257 | 392 | 126 | 263 | 1.23e-16 | 82.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1327320 | AT3G22104.1 | 49.126 | 515 | 227 | 8 | 3 | 492 | 2 | 506 | 8.14e-156 | 453 |
| Msa1327320 | AT3G22104.4 | 47.955 | 440 | 195 | 7 | 77 | 492 | 2 | 431 | 1.72e-122 | 365 |
| Msa1327320 | AT3G22104.2 | 47.955 | 440 | 195 | 7 | 77 | 492 | 2 | 431 | 1.72e-122 | 365 |
| Msa1327320 | AT3G22104.3 | 47.955 | 440 | 195 | 7 | 77 | 492 | 2 | 431 | 1.72e-122 | 365 |
| Msa1327320 | AT3G19850.1 | 31.835 | 556 | 303 | 17 | 6 | 491 | 5 | 554 | 4.69e-76 | 249 |
| Msa1327320 | AT1G50280.1 | 35.000 | 420 | 230 | 13 | 7 | 392 | 6 | 416 | 2.87e-60 | 206 |
| Msa1327320 | AT1G50280.2 | 35.753 | 372 | 200 | 12 | 51 | 392 | 21 | 383 | 7.48e-55 | 191 |
| Msa1327320 | AT5G66560.2 | 34.545 | 385 | 211 | 10 | 43 | 391 | 100 | 479 | 3.28e-48 | 173 |
| Msa1327320 | AT5G66560.4 | 34.456 | 386 | 212 | 10 | 43 | 392 | 61 | 441 | 2.90e-47 | 173 |
| Msa1327320 | AT5G66560.3 | 34.456 | 386 | 212 | 10 | 43 | 392 | 71 | 451 | 3.24e-47 | 173 |
| Msa1327320 | AT5G66560.1 | 34.456 | 386 | 212 | 10 | 43 | 392 | 100 | 480 | 4.62e-47 | 173 |
| Msa1327320 | AT3G08570.1 | 29.384 | 422 | 242 | 13 | 7 | 391 | 37 | 439 | 5.27e-43 | 161 |
| Msa1327320 | AT3G50840.1 | 30.542 | 406 | 247 | 10 | 7 | 392 | 19 | 409 | 2.04e-41 | 156 |
| Msa1327320 | AT5G48800.1 | 30.864 | 405 | 247 | 13 | 7 | 392 | 44 | 434 | 2.28e-41 | 157 |
| Msa1327320 | AT3G50840.2 | 32.222 | 360 | 216 | 8 | 50 | 392 | 25 | 373 | 2.51e-40 | 152 |
| Msa1327320 | AT3G50840.3 | 32.222 | 360 | 216 | 8 | 50 | 392 | 25 | 373 | 2.51e-40 | 152 |
| Msa1327320 | AT5G03250.1 | 25.360 | 556 | 316 | 17 | 14 | 487 | 35 | 573 | 6.12e-40 | 152 |
| Msa1327320 | AT3G08660.1 | 26.753 | 542 | 303 | 19 | 10 | 489 | 40 | 549 | 5.46e-37 | 144 |
| Msa1327320 | AT1G30440.1 | 29.138 | 429 | 247 | 12 | 14 | 391 | 35 | 457 | 5.87e-37 | 144 |
| Msa1327320 | AT5G13600.1 | 28.000 | 550 | 295 | 22 | 15 | 485 | 36 | 563 | 7.55e-37 | 144 |
| Msa1327320 | AT3G08660.2 | 28.607 | 402 | 241 | 11 | 10 | 391 | 40 | 415 | 2.97e-36 | 139 |
| Msa1327320 | AT3G08660.3 | 26.892 | 502 | 276 | 17 | 50 | 489 | 17 | 489 | 1.16e-35 | 139 |
| Msa1327320 | AT3G44820.1 | 25.995 | 427 | 259 | 10 | 18 | 391 | 36 | 458 | 1.44e-35 | 140 |
| Msa1327320 | AT5G67385.1 | 27.970 | 404 | 253 | 12 | 14 | 392 | 34 | 424 | 4.63e-32 | 130 |
| Msa1327320 | AT3G49970.1 | 27.041 | 392 | 232 | 11 | 17 | 392 | 6 | 359 | 4.68e-32 | 129 |
| Msa1327320 | AT3G49970.2 | 27.041 | 392 | 232 | 11 | 17 | 392 | 6 | 359 | 4.68e-32 | 129 |
| Msa1327320 | AT2G47860.4 | 28.205 | 429 | 239 | 14 | 7 | 391 | 40 | 443 | 1.37e-31 | 126 |
| Msa1327320 | AT5G67385.4 | 28.238 | 386 | 239 | 12 | 32 | 392 | 7 | 379 | 3.75e-31 | 127 |
| Msa1327320 | AT5G67385.5 | 28.238 | 386 | 239 | 12 | 32 | 392 | 7 | 379 | 3.75e-31 | 127 |
| Msa1327320 | AT5G67385.2 | 28.238 | 386 | 239 | 12 | 32 | 392 | 7 | 379 | 3.75e-31 | 127 |
| Msa1327320 | AT5G67385.3 | 28.238 | 386 | 239 | 12 | 32 | 392 | 7 | 379 | 3.75e-31 | 127 |
| Msa1327320 | AT2G47860.1 | 28.205 | 429 | 239 | 14 | 7 | 391 | 40 | 443 | 3.78e-31 | 127 |
| Msa1327320 | AT3G26490.2 | 28.283 | 396 | 218 | 12 | 52 | 393 | 75 | 458 | 6.23e-31 | 125 |
| Msa1327320 | AT5G47800.3 | 27.676 | 383 | 223 | 13 | 43 | 391 | 63 | 425 | 9.13e-31 | 125 |
| Msa1327320 | AT5G47800.1 | 27.676 | 383 | 223 | 13 | 43 | 391 | 63 | 425 | 9.13e-31 | 125 |
| Msa1327320 | AT5G47800.4 | 27.676 | 383 | 223 | 13 | 43 | 391 | 63 | 425 | 9.13e-31 | 125 |
| Msa1327320 | AT2G23050.1 | 27.221 | 349 | 218 | 9 | 52 | 391 | 78 | 399 | 1.76e-30 | 124 |
| Msa1327320 | AT3G26490.1 | 28.173 | 394 | 217 | 12 | 52 | 391 | 75 | 456 | 1.89e-30 | 125 |
| Msa1327320 | AT3G26490.3 | 28.173 | 394 | 217 | 12 | 52 | 391 | 75 | 456 | 1.89e-30 | 125 |
| Msa1327320 | AT3G26490.4 | 28.173 | 394 | 217 | 12 | 52 | 391 | 75 | 456 | 1.89e-30 | 125 |
| Msa1327320 | AT5G47800.2 | 27.676 | 383 | 223 | 13 | 43 | 391 | 176 | 538 | 1.93e-30 | 125 |
| Msa1327320 | AT2G47860.6 | 29.058 | 382 | 207 | 12 | 54 | 391 | 105 | 466 | 5.28e-30 | 122 |
| Msa1327320 | AT1G03010.1 | 28.868 | 433 | 241 | 15 | 7 | 391 | 39 | 452 | 1.14e-29 | 123 |
| Msa1327320 | AT1G03010.2 | 28.868 | 433 | 241 | 15 | 7 | 391 | 12 | 425 | 1.20e-29 | 122 |
| Msa1327320 | AT1G03010.3 | 28.868 | 433 | 241 | 15 | 7 | 391 | 38 | 451 | 1.37e-29 | 122 |
| Msa1327320 | AT2G47860.3 | 29.058 | 382 | 207 | 12 | 54 | 391 | 105 | 466 | 1.42e-29 | 123 |
| Msa1327320 | AT5G03250.2 | 24.043 | 470 | 259 | 14 | 100 | 487 | 8 | 461 | 4.81e-28 | 117 |
| Msa1327320 | AT2G30520.1 | 25.325 | 462 | 273 | 12 | 14 | 437 | 39 | 466 | 1.46e-27 | 116 |
| Msa1327320 | AT2G14820.2 | 27.151 | 372 | 230 | 11 | 53 | 391 | 74 | 437 | 2.15e-27 | 116 |
| Msa1327320 | AT2G14820.1 | 27.151 | 372 | 230 | 11 | 53 | 391 | 74 | 437 | 2.15e-27 | 116 |
| Msa1327320 | AT2G30520.2 | 25.459 | 436 | 254 | 11 | 40 | 437 | 16 | 418 | 3.49e-26 | 112 |
| Msa1327320 | AT2G30520.3 | 25.459 | 436 | 254 | 11 | 40 | 437 | 16 | 418 | 3.49e-26 | 112 |
| Msa1327320 | AT1G67900.5 | 25.616 | 406 | 231 | 12 | 52 | 397 | 69 | 463 | 4.53e-25 | 109 |
| Msa1327320 | AT1G67900.1 | 25.616 | 406 | 231 | 12 | 52 | 397 | 69 | 463 | 4.53e-25 | 109 |
| Msa1327320 | AT1G67900.3 | 25.616 | 406 | 231 | 12 | 52 | 397 | 69 | 463 | 4.53e-25 | 109 |
| Msa1327320 | AT1G67900.6 | 25.616 | 406 | 231 | 12 | 52 | 397 | 69 | 463 | 4.53e-25 | 109 |
| Msa1327320 | AT1G67900.2 | 25.616 | 406 | 231 | 12 | 52 | 397 | 69 | 463 | 4.53e-25 | 109 |
| Msa1327320 | AT1G67900.4 | 25.616 | 406 | 231 | 12 | 52 | 397 | 69 | 463 | 4.53e-25 | 109 |
| Msa1327320 | AT5G67440.3 | 24.079 | 407 | 271 | 12 | 10 | 391 | 32 | 425 | 1.55e-24 | 107 |
| Msa1327320 | AT5G67440.1 | 24.079 | 407 | 271 | 12 | 10 | 391 | 32 | 425 | 1.55e-24 | 107 |
| Msa1327320 | AT5G67440.2 | 24.227 | 388 | 256 | 12 | 29 | 391 | 14 | 388 | 9.54e-24 | 104 |
| Msa1327320 | AT4G31820.1 | 25.666 | 413 | 258 | 15 | 7 | 391 | 26 | 417 | 2.95e-22 | 100 |
| Msa1327320 | AT4G37590.1 | 26.650 | 409 | 239 | 14 | 14 | 391 | 36 | 414 | 3.66e-21 | 97.1 |
| Msa1327320 | AT4G31820.2 | 25.459 | 381 | 239 | 13 | 35 | 391 | 5 | 364 | 2.17e-20 | 94.7 |
| Msa1327320 | AT2G23050.2 | 25.890 | 309 | 194 | 8 | 92 | 391 | 1 | 283 | 7.24e-20 | 91.7 |
| Msa1327320 | AT1G52770.1 | 35.849 | 159 | 99 | 3 | 236 | 392 | 96 | 253 | 1.37e-15 | 79.3 |
| Msa1327320 | AT3G15570.1 | 34.591 | 159 | 101 | 3 | 236 | 392 | 101 | 258 | 5.33e-15 | 77.4 |
| Msa1327320 | AT5G64330.2 | 23.361 | 244 | 143 | 7 | 14 | 229 | 61 | 288 | 1.01e-13 | 74.3 |
| Msa1327320 | AT5G64330.1 | 23.361 | 244 | 143 | 7 | 14 | 229 | 61 | 288 | 1.58e-13 | 73.6 |
| Msa1327320 | AT5G64330.3 | 24.286 | 210 | 116 | 6 | 48 | 229 | 35 | 229 | 4.51e-13 | 72.0 |
| Msa1327320 | AT5G10250.2 | 32.000 | 125 | 82 | 3 | 7 | 131 | 53 | 174 | 3.12e-11 | 66.2 |
| Msa1327320 | AT5G10250.2 | 30.556 | 144 | 87 | 2 | 260 | 392 | 311 | 452 | 6.84e-11 | 65.1 |
| Msa1327320 | AT5G10250.1 | 32.000 | 125 | 82 | 3 | 7 | 131 | 53 | 174 | 3.29e-11 | 66.2 |
Find 105 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTCTTTCAAAACATTATT+TGG | 0.102995 | 8_4:+44417830 | Msa1327320:CDS |
| AGCAAATTGGCTAAAGTATT+TGG | 0.117951 | 8_4:+44417137 | Msa1327320:CDS |
| GTCAATGCTTTCGAGTAAAT+TGG | 0.197083 | 8_4:+44417679 | Msa1327320:CDS |
| TTTGAAGCAATGTCAGAATT+TGG | 0.261195 | 8_4:+44417421 | Msa1327320:CDS |
| CGGTTCAAGGGATTAGTTAT+TGG | 0.270197 | 8_4:+44417375 | Msa1327320:CDS |
| CTCATTGTATGGAGTTGAAA+TGG | 0.300890 | 8_4:-44418873 | None:intergenic |
| CGAATGACAGTTCAGGGATT+AGG | 0.302390 | 8_4:+44417543 | Msa1327320:CDS |
| AAACATTATTTGGGATTCTT+CGG | 0.325788 | 8_4:+44417840 | Msa1327320:CDS |
| TACTCAATACTCGAGCAAAT+TGG | 0.347083 | 8_4:+44417124 | Msa1327320:CDS |
| AACATTATTTGGGATTCTTC+GGG | 0.354248 | 8_4:+44417841 | Msa1327320:CDS |
| TTTCTTTCAAAACATTATTT+GGG | 0.363196 | 8_4:+44417831 | Msa1327320:CDS |
| AAAGAATCCCTAGCAGAATC+TGG | 0.366057 | 8_4:-44418163 | None:intergenic |
| GATTATGATTGGTTCACAAT+TGG | 0.371651 | 8_4:+44417910 | Msa1327320:CDS |
| AGTTGTTCGAATGACAGTTC+AGG | 0.376305 | 8_4:+44417536 | Msa1327320:CDS |
| GGATGCTGTAGTTGGGAGGT+TGG | 0.380592 | 8_4:+44417481 | Msa1327320:CDS |
| TGTAGTTGGGAGGTTGGTTT+CGG | 0.383602 | 8_4:+44417487 | Msa1327320:CDS |
| AATCTTGAAGTGGATGTAAA+TGG | 0.387252 | 8_4:+44415949 | Msa1327320:CDS |
| AGGAATGCAGTGGAGGGTTA+TGG | 0.389720 | 8_4:+44419012 | Msa1327320:CDS |
| AATAAGTTGGAGATTATGAT+TGG | 0.392496 | 8_4:+44417899 | Msa1327320:CDS |
| GAAAGACAAAACCAAGGAAA+AGG | 0.412154 | 8_4:-44415755 | None:intergenic |
| TTTGTGTGGTTCTTCACAAA+AGG | 0.419673 | 8_4:+44418898 | Msa1327320:CDS |
| AAATGGGAGTAGTAGTAGTA+AGG | 0.420418 | 8_4:-44418856 | None:intergenic |
| TTTCTAGTTATTATGGATGA+AGG | 0.422170 | 8_4:+44415919 | Msa1327320:exon |
| AGAAACTTTCATGGTGGATA+AGG | 0.429758 | 8_4:+44415975 | Msa1327320:CDS |
| TGGATCATTATGTTATAAGT+AGG | 0.433791 | 8_4:+44417699 | Msa1327320:CDS |
| GCAACTTTCCGCATCTGAAC+GGG | 0.435207 | 8_4:-44418055 | None:intergenic |
| AATGAGGATGGAAGAGGAAA+AGG | 0.438792 | 8_4:-44415847 | None:intergenic |
| TGAACATAAGTAAATGTAGT+AGG | 0.441739 | 8_4:+44417876 | Msa1327320:CDS |
| GTGTTCCTGCGGCAAGGAAC+TGG | 0.443397 | 8_4:+44418022 | Msa1327320:CDS |
| GAAGTGCAAAATCGTTGAAA+TGG | 0.446736 | 8_4:+44417772 | Msa1327320:CDS |
| AAAGCATCTGGTCATAGTTA+TGG | 0.455369 | 8_4:+44419091 | Msa1327320:CDS |
| GGAAAAGGGTTGTGGTCAAT+TGG | 0.456525 | 8_4:-44415740 | None:intergenic |
| TTACCAACATGATAACCATC+TGG | 0.456686 | 8_4:-44417655 | None:intergenic |
| TTGCTTGTTCCATCTCCCTA+TGG | 0.458028 | 8_4:+44417953 | Msa1327320:CDS |
| TGTGATGCTAGAGAAGTGTT+TGG | 0.459519 | 8_4:+44417460 | Msa1327320:CDS |
| ATGACAAAATCAAAAGCATC+TGG | 0.463126 | 8_4:+44419079 | Msa1327320:CDS |
| GGGTTATAGTTGTGTTGGAA+TGG | 0.469151 | 8_4:-44415693 | None:intergenic |
| TTCTGTTATAACAATGGAAA+AGG | 0.474857 | 8_4:+44417245 | Msa1327320:CDS |
| CCACACAAAGACTCATTGTA+TGG | 0.479392 | 8_4:-44418884 | None:intergenic |
| TCAAAACCTTCTGCACCTCC+TGG | 0.479630 | 8_4:-44417209 | None:intergenic |
| ATATAAGTAGTTTATTCCAT+AGG | 0.480644 | 8_4:-44417969 | None:intergenic |
| AGTGTTTGGATGCTGTAGTT+GGG | 0.482062 | 8_4:+44417474 | Msa1327320:CDS |
| TAAATGTAGTAGGAATAAGT+TGG | 0.484168 | 8_4:+44417886 | Msa1327320:CDS |
| AAGTGTTTGGATGCTGTAGT+TGG | 0.484528 | 8_4:+44417473 | Msa1327320:CDS |
| AAGAGTCATGAACATAGCTT+TGG | 0.491223 | 8_4:-44419124 | None:intergenic |
| TTGTGTGGTTCTTCACAAAA+GGG | 0.493367 | 8_4:+44418899 | Msa1327320:CDS |
| CAAACTGAAAAGTCGGTTCA+AGG | 0.493445 | 8_4:+44417362 | Msa1327320:CDS |
| TATAAGTAGTTTATTCCATA+GGG | 0.496705 | 8_4:-44417968 | None:intergenic |
| GTTGTTCGAATGACAGTTCA+GGG | 0.497978 | 8_4:+44417537 | Msa1327320:CDS |
| AAATGGAGAAGAAACTTTCA+TGG | 0.499209 | 8_4:+44415966 | Msa1327320:CDS |
| GGAAAATCTAGTGGTGGAAG+TGG | 0.507767 | 8_4:+44417158 | Msa1327320:CDS |
| CTGCACCTCCTGGAAAATCA+TGG | 0.509317 | 8_4:-44417199 | None:intergenic |
| TCATTGTATGGAGTTGAAAT+GGG | 0.511429 | 8_4:-44418872 | None:intergenic |
| AAAGACAAAACCAAGGAAAA+GGG | 0.518371 | 8_4:-44415754 | None:intergenic |
| CAGCTCTTCCAGATTCTGCT+AGG | 0.520217 | 8_4:+44418155 | Msa1327320:CDS |
| GAACAAGTTGTGTTGTATGC+TGG | 0.522427 | 8_4:+44418941 | Msa1327320:CDS |
| AAGGGATTAGTTATTGGTCA+TGG | 0.523562 | 8_4:+44417381 | Msa1327320:CDS |
| GAGACAGAAGTAGTGCGGTT+GGG | 0.532780 | 8_4:-44415713 | None:intergenic |
| TACCAACATGATAACCATCT+GGG | 0.536405 | 8_4:-44417654 | None:intergenic |
| CGGTTGGGTTATAGTTGTGT+TGG | 0.537400 | 8_4:-44415698 | None:intergenic |
| ACAATTGGATCAAGTAACAT+TGG | 0.540829 | 8_4:+44417925 | Msa1327320:CDS |
| GTTTCTTCTGTATTATCAGA+AGG | 0.541194 | 8_4:+44417721 | Msa1327320:CDS |
| CCGCACCAGTTCCTTGCCGC+AGG | 0.541269 | 8_4:-44418027 | None:intergenic |
| TAGTTTATTCCATAGGGAGA+TGG | 0.542308 | 8_4:-44417962 | None:intergenic |
| TTAAGATTCTGTTATAACAA+TGG | 0.544300 | 8_4:+44417239 | Msa1327320:CDS |
| TCCCCAGATGGTTATCATGT+TGG | 0.544832 | 8_4:+44417652 | Msa1327320:CDS |
| AGCAACTTTCCGCATCTGAA+CGG | 0.556641 | 8_4:-44418056 | None:intergenic |
| AGAGACAGAAGTAGTGCGGT+TGG | 0.558217 | 8_4:-44415714 | None:intergenic |
| ACATGAAGTGATATTCTAAG+AGG | 0.561631 | 8_4:-44415805 | None:intergenic |
| ATTGGATCAAACTGAAAAGT+CGG | 0.562191 | 8_4:+44417355 | Msa1327320:CDS |
| AAAACCAAGGAAAAGGGTTG+TGG | 0.564062 | 8_4:-44415748 | None:intergenic |
| AGCTCTTCCAGATTCTGCTA+GGG | 0.564119 | 8_4:+44418156 | Msa1327320:CDS |
| TTGAAAGTGTTCCTGCGGCA+AGG | 0.565024 | 8_4:+44418016 | Msa1327320:CDS |
| TGATGAACTCTACCATGCAA+TGG | 0.566425 | 8_4:+44418186 | Msa1327320:CDS |
| ATTTGCAAGGAATGCAGTGG+AGG | 0.572628 | 8_4:+44419005 | Msa1327320:CDS |
| CGAATTTCACTCGTTCAACA+TGG | 0.576175 | 8_4:+44417603 | Msa1327320:CDS |
| GTTTGGATGCTGTAGTTGGG+AGG | 0.580041 | 8_4:+44417477 | Msa1327320:CDS |
| GCATTGTGCTGCTGAATACA+TGG | 0.582534 | 8_4:+44417298 | Msa1327320:CDS |
| AAACTGAAAAGTCGGTTCAA+GGG | 0.583502 | 8_4:+44417363 | Msa1327320:CDS |
| ATATGCATTACGAAATAGAC+CGG | 0.586731 | 8_4:+44417801 | Msa1327320:CDS |
| GTTACATATAATATGTGTGG+AGG | 0.588032 | 8_4:-44415610 | None:intergenic |
| TTCGAACAACTCGAGGGACA+CGG | 0.589174 | 8_4:-44417524 | None:intergenic |
| AAAGTATTTGGAAAATCTAG+TGG | 0.598023 | 8_4:+44417149 | Msa1327320:CDS |
| CGGTTGCTCCCGTTCAGATG+CGG | 0.601268 | 8_4:+44418047 | Msa1327320:CDS |
| TGCGCGAGTAACAGATTCGA+AGG | 0.603058 | 8_4:-44417278 | None:intergenic |
| AACATTTGCAAGGAATGCAG+TGG | 0.611430 | 8_4:+44419002 | Msa1327320:CDS |
| CTTCTCATCTGTAGTAGCAG+TGG | 0.611616 | 8_4:-44417753 | None:intergenic |
| CGAGATACATGTCCATTGCA+TGG | 0.615686 | 8_4:-44418198 | None:intergenic |
| AAAATGAAAGAACATTTGCA+AGG | 0.616420 | 8_4:+44418992 | Msa1327320:CDS |
| TTTGCAAGGAATGCAGTGGA+GGG | 0.620645 | 8_4:+44419006 | Msa1327320:CDS |
| CCATACAATGAGTCTTTGTG+TGG | 0.622626 | 8_4:+44418884 | Msa1327320:CDS |
| AGTGTTACATATAATATGTG+TGG | 0.624792 | 8_4:-44415613 | None:intergenic |
| AGGTTTCTGCAATCTTGAAG+TGG | 0.626848 | 8_4:+44415939 | Msa1327320:CDS |
| TGCAATGGACATGTATCTCG+AGG | 0.652835 | 8_4:+44418201 | Msa1327320:CDS |
| GTATTTGGAAAATCTAGTGG+TGG | 0.653932 | 8_4:+44417152 | Msa1327320:CDS |
| AAGACAGAAAGACAAAACCA+AGG | 0.657843 | 8_4:-44415761 | None:intergenic |
| ACTGTCATTCGAACAACTCG+AGG | 0.659603 | 8_4:-44417531 | None:intergenic |
| AATGGATACAACAAGGACAA+AGG | 0.667374 | 8_4:-44415675 | None:intergenic |
| ATTTCACTCGTTCAACATGG+TGG | 0.675778 | 8_4:+44417606 | Msa1327320:CDS |
| CCTGCGGCAAGGAACTGGTG+CGG | 0.676159 | 8_4:+44418027 | Msa1327320:CDS |
| TGGAGAAGAAACTTTCATGG+TGG | 0.676896 | 8_4:+44415969 | Msa1327320:CDS |
| ACCAACATGATAACCATCTG+GGG | 0.676918 | 8_4:-44417653 | None:intergenic |
| CTGTCATTCGAACAACTCGA+GGG | 0.677499 | 8_4:-44417530 | None:intergenic |
| GTGCAGAGACAGAAGTAGTG+CGG | 0.703525 | 8_4:-44415718 | None:intergenic |
| GTGTTGGAATGGATACAACA+AGG | 0.725933 | 8_4:-44415682 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATTTTGTATGTTTTAAT+AGG | + | chr8_4:44416277-44416296 | Msa1327320:intron | 10.0% |
| !! | TATAAAAATAGGAAAATATA+TGG | - | chr8_4:44416945-44416964 | None:intergenic | 10.0% |
| !!! | TAATCTAAAATTGTTTAAAT+TGG | + | chr8_4:44417082-44417101 | Msa1327320:intron | 10.0% |
| !!! | TCAAAATTTAAAATTCAAAA+TGG | - | chr8_4:44418241-44418260 | None:intergenic | 10.0% |
| !!! | ATTTTTCTTTCTAGTTATTA+TGG | + | chr8_4:44415912-44415931 | Msa1327320:exon | 15.0% |
| !! | TTTATATTATAGGATTTACA+AGG | + | chr8_4:44416326-44416345 | Msa1327320:intron | 15.0% |
| !!! | CTTTAATTTAGAAATGATTA+TGG | + | chr8_4:44416407-44416426 | Msa1327320:intron | 15.0% |
| !! | GTGAAAATAAAAAATTACTA+GGG | - | chr8_4:44416446-44416465 | None:intergenic | 15.0% |
| !! | AGTGAAAATAAAAAATTACT+AGG | - | chr8_4:44416447-44416466 | None:intergenic | 15.0% |
| !! | AAAAAATAATAAATCAAGCA+TGG | - | chr8_4:44416804-44416823 | None:intergenic | 15.0% |
| !! | TTTCTTTCAAAACATTATTT+GGG | + | chr8_4:44417831-44417850 | Msa1327320:CDS | 15.0% |
| !!! | TTTAAAAACTTCAAAGTTTT+TGG | + | chr8_4:44418123-44418142 | Msa1327320:CDS | 15.0% |
| !!! | ATAAAGATTTCTTACAATTT+TGG | - | chr8_4:44418466-44418485 | None:intergenic | 15.0% |
| !! | GTACTAGTAGTTTATATTAT+AGG | + | chr8_4:44416316-44416335 | Msa1327320:intron | 20.0% |
| !! | TTGGTTATTATGATGATTAA+TGG | + | chr8_4:44416357-44416376 | Msa1327320:intron | 20.0% |
| !! | ATTTAGGTGCAAATTTATTA+TGG | - | chr8_4:44416514-44416533 | None:intergenic | 20.0% |
| !!! | TTTTTGTTAACATTTTTGAC+AGG | + | chr8_4:44416733-44416752 | Msa1327320:intron | 20.0% |
| !!! | TTTCTGTGCTTTAATTATTT+TGG | + | chr8_4:44416900-44416919 | Msa1327320:intron | 20.0% |
| !!! | ATGTTTTTGGTAAGTTATTT+TGG | + | chr8_4:44417003-44417022 | Msa1327320:intron | 20.0% |
| !! | TTAAGATTCTGTTATAACAA+TGG | + | chr8_4:44417239-44417258 | Msa1327320:CDS | 20.0% |
| !!! | GAAAAATGTTTCTAACTTAT+TGG | + | chr8_4:44417337-44417356 | Msa1327320:CDS | 20.0% |
| !! | GTTTCTTTCAAAACATTATT+TGG | + | chr8_4:44417830-44417849 | Msa1327320:CDS | 20.0% |
| !! | TATAAGTAGTTTATTCCATA+GGG | - | chr8_4:44417971-44417990 | None:intergenic | 20.0% |
| !! | ATATAAGTAGTTTATTCCAT+AGG | - | chr8_4:44417972-44417991 | None:intergenic | 20.0% |
| !!! | AACTTTGAAGTTTTTAAACA+AGG | - | chr8_4:44418121-44418140 | None:intergenic | 20.0% |
| !!! | AATTTTGAAGTCTATAACTT+TGG | + | chr8_4:44418253-44418272 | Msa1327320:intron | 20.0% |
| !! | TAACATAGTAAATTTGAATG+CGG | + | chr8_4:44418429-44418448 | Msa1327320:intron | 20.0% |
| !!! | TTTCTTACAATTTTGGATAA+GGG | - | chr8_4:44418459-44418478 | None:intergenic | 20.0% |
| !!! | ATTTCTTACAATTTTGGATA+AGG | - | chr8_4:44418460-44418479 | None:intergenic | 20.0% |
| !! | ATTAATAAAGATGACGTTAA+TGG | - | chr8_4:44418646-44418665 | None:intergenic | 20.0% |
| ! | AGTGTTACATATAATATGTG+TGG | - | chr8_4:44415616-44415635 | None:intergenic | 25.0% |
| !!! | TTTCTAGTTATTATGGATGA+AGG | + | chr8_4:44415919-44415938 | Msa1327320:exon | 25.0% |
| !!! | TTTTTTGTAAAGTGTATGTC+TGG | + | chr8_4:44416001-44416020 | Msa1327320:intron | 25.0% |
| ! | TACAATCATAAAGTTACCAA+GGG | - | chr8_4:44416479-44416498 | None:intergenic | 25.0% |
| ! | CAAAAACAAACAAAATACGA+AGG | - | chr8_4:44416719-44416738 | None:intergenic | 25.0% |
| ! | GACAATAAATTGTAGAATGA+GGG | - | chr8_4:44416853-44416872 | None:intergenic | 25.0% |
| ! | AGACAATAAATTGTAGAATG+AGG | - | chr8_4:44416854-44416873 | None:intergenic | 25.0% |
| ! | AAATAGGAAAATATATGGAG+AGG | - | chr8_4:44416940-44416959 | None:intergenic | 25.0% |
| ! | AAGTAAGCAGGTATAAAAAT+AGG | - | chr8_4:44416956-44416975 | None:intergenic | 25.0% |
| !!! | CTCTAGTTATTTCATGTTTT+TGG | + | chr8_4:44416990-44417009 | Msa1327320:intron | 25.0% |
| !! | AAAGTATTTGGAAAATCTAG+TGG | + | chr8_4:44417149-44417168 | Msa1327320:CDS | 25.0% |
| ! | TTCTGTTATAACAATGGAAA+AGG | + | chr8_4:44417245-44417264 | Msa1327320:CDS | 25.0% |
| ! | TGGATCATTATGTTATAAGT+AGG | + | chr8_4:44417699-44417718 | Msa1327320:CDS | 25.0% |
| !! | AAACATTATTTGGGATTCTT+CGG | + | chr8_4:44417840-44417859 | Msa1327320:CDS | 25.0% |
| ! | TGAACATAAGTAAATGTAGT+AGG | + | chr8_4:44417876-44417895 | Msa1327320:CDS | 25.0% |
| ! | TAAATGTAGTAGGAATAAGT+TGG | + | chr8_4:44417886-44417905 | Msa1327320:CDS | 25.0% |
| !! | AATAAGTTGGAGATTATGAT+TGG | + | chr8_4:44417899-44417918 | Msa1327320:CDS | 25.0% |
| ! | CTTTCAAAAATCTCAAAACA+AGG | - | chr8_4:44418003-44418022 | None:intergenic | 25.0% |
| ! | TAATCAAGTAGTTAACTACA+TGG | - | chr8_4:44418279-44418298 | None:intergenic | 25.0% |
| ! | AATCTTTATCTTCTACTCAT+TGG | + | chr8_4:44418477-44418496 | Msa1327320:intron | 25.0% |
| ! | TAATCACATCTACATCAAAA+CGG | + | chr8_4:44418609-44418628 | Msa1327320:intron | 25.0% |
| ! | ATAATTTCCTCTTCTGTTAT+AGG | + | chr8_4:44418667-44418686 | Msa1327320:intron | 25.0% |
| !!! | GAAATTTCGTGTTTTTTGAA+AGG | - | chr8_4:44418778-44418797 | None:intergenic | 25.0% |
| !! | TCTTTCATTTTCTCATTATC+TGG | - | chr8_4:44418983-44419002 | None:intergenic | 25.0% |
| ! | AAAATGAAAGAACATTTGCA+AGG | + | chr8_4:44418992-44419011 | Msa1327320:CDS | 25.0% |
| AAAGACAAAACCAAGGAAAA+GGG | - | chr8_4:44415757-44415776 | None:intergenic | 30.0% | |
| ACATGAAGTGATATTCTAAG+AGG | - | chr8_4:44415808-44415827 | None:intergenic | 30.0% | |
| TGAGAAAACAAAAATGAGGA+TGG | - | chr8_4:44415862-44415881 | None:intergenic | 30.0% | |
| CAGTTGAGAAAACAAAAATG+AGG | - | chr8_4:44415866-44415885 | None:intergenic | 30.0% | |
| AATCTTGAAGTGGATGTAAA+TGG | + | chr8_4:44415949-44415968 | Msa1327320:CDS | 30.0% | |
| AAATGGAGAAGAAACTTTCA+TGG | + | chr8_4:44415966-44415985 | Msa1327320:CDS | 30.0% | |
| ! | GATTTACAAGGTTTGTCTTT+TGG | + | chr8_4:44416338-44416357 | Msa1327320:intron | 30.0% |
| CTACAATCATAAAGTTACCA+AGG | - | chr8_4:44416480-44416499 | None:intergenic | 30.0% | |
| AGGTGCAAATTTATTATGGA+TGG | - | chr8_4:44416510-44416529 | None:intergenic | 30.0% | |
| !! | AAAAAAGTGTCTTGTGTTTG+TGG | - | chr8_4:44416604-44416623 | None:intergenic | 30.0% |
| ! | ATGGTCTTCTAATGCTTTTA+TGG | + | chr8_4:44416689-44416708 | Msa1327320:intron | 30.0% |
| GAAACCAAAAACATTGAATG+AGG | - | chr8_4:44416884-44416903 | None:intergenic | 30.0% | |
| ! | AGCAAATTGGCTAAAGTATT+TGG | + | chr8_4:44417137-44417156 | Msa1327320:CDS | 30.0% |
| ! | GTAATATTCCATGATTTTCC+AGG | + | chr8_4:44417191-44417210 | Msa1327320:CDS | 30.0% |
| ATTGGATCAAACTGAAAAGT+CGG | + | chr8_4:44417355-44417374 | Msa1327320:CDS | 30.0% | |
| ! | TTTGAAGCAATGTCAGAATT+TGG | + | chr8_4:44417421-44417440 | Msa1327320:CDS | 30.0% |
| GTTTCTTCTGTATTATCAGA+AGG | + | chr8_4:44417721-44417740 | Msa1327320:CDS | 30.0% | |
| ATATGCATTACGAAATAGAC+CGG | + | chr8_4:44417801-44417820 | Msa1327320:CDS | 30.0% | |
| !! | TTTTGAAAGAAACAGAACTC+CGG | - | chr8_4:44417823-44417842 | None:intergenic | 30.0% |
| ! | AACATTATTTGGGATTCTTC+GGG | + | chr8_4:44417841-44417860 | Msa1327320:CDS | 30.0% |
| ! | GATTATGATTGGTTCACAAT+TGG | + | chr8_4:44417910-44417929 | Msa1327320:CDS | 30.0% |
| ACAATTGGATCAAGTAACAT+TGG | + | chr8_4:44417925-44417944 | Msa1327320:CDS | 30.0% | |
| ! | GAAGTTTTTAAACAAGGATC+AGG | - | chr8_4:44418115-44418134 | None:intergenic | 30.0% |
| !! | ACAAAACTAATCGACTTGTA+AGG | - | chr8_4:44418379-44418398 | None:intergenic | 30.0% |
| !!! | TACAAGTCGATTAGTTTTGT+AGG | + | chr8_4:44418379-44418398 | Msa1327320:intron | 30.0% |
| !!! | ACAAGTCGATTAGTTTTGTA+GGG | + | chr8_4:44418380-44418399 | Msa1327320:intron | 30.0% |
| ACATCAAAACGGTTGTAATA+CGG | + | chr8_4:44418620-44418639 | Msa1327320:intron | 30.0% | |
| TCATTGTATGGAGTTGAAAT+GGG | - | chr8_4:44418875-44418894 | None:intergenic | 30.0% | |
| !! | ATGACAAAATCAAAAGCATC+TGG | + | chr8_4:44419079-44419098 | Msa1327320:CDS | 30.0% |
| AATGGATACAACAAGGACAA+AGG | - | chr8_4:44415678-44415697 | None:intergenic | 35.0% | |
| GAAAGACAAAACCAAGGAAA+AGG | - | chr8_4:44415758-44415777 | None:intergenic | 35.0% | |
| AAGACAGAAAGACAAAACCA+AGG | - | chr8_4:44415764-44415783 | None:intergenic | 35.0% | |
| AACAAAAATGAGGATGGAAG+AGG | - | chr8_4:44415856-44415875 | None:intergenic | 35.0% | |
| ! | TGTTTTCTCAACTGAACAGA+AGG | + | chr8_4:44415872-44415891 | Msa1327320:five_prime_UTR | 35.0% |
| !! | AGAAACTTTCATGGTGGATA+AGG | + | chr8_4:44415975-44415994 | Msa1327320:CDS | 35.0% |
| CAAGTGTATGTCTGATATCA+TGG | + | chr8_4:44416077-44416096 | Msa1327320:intron | 35.0% | |
| AAGGAAAATCATTGCAAGCA+TGG | - | chr8_4:44416566-44416585 | None:intergenic | 35.0% | |
| ! | AACATTTTTGACAGGATCTG+AGG | + | chr8_4:44416741-44416760 | Msa1327320:intron | 35.0% |
| ! | ACATTTTTGACAGGATCTGA+GGG | + | chr8_4:44416742-44416761 | Msa1327320:intron | 35.0% |
| ! | ACGACCTCATTCAATGTTTT+TGG | + | chr8_4:44416877-44416896 | Msa1327320:intron | 35.0% |
| CATACACTAGAAAAGTAAGC+AGG | - | chr8_4:44416968-44416987 | None:intergenic | 35.0% | |
| TACTCAATACTCGAGCAAAT+TGG | + | chr8_4:44417124-44417143 | Msa1327320:CDS | 35.0% | |
| GTATTTGGAAAATCTAGTGG+TGG | + | chr8_4:44417152-44417171 | Msa1327320:CDS | 35.0% | |
| ! | ATATTCCATGATTTTCCAGG+AGG | + | chr8_4:44417194-44417213 | Msa1327320:CDS | 35.0% |
| ! | AAACTGAAAAGTCGGTTCAA+GGG | + | chr8_4:44417363-44417382 | Msa1327320:CDS | 35.0% |
| !! | AAGGGATTAGTTATTGGTCA+TGG | + | chr8_4:44417381-44417400 | Msa1327320:CDS | 35.0% |
| TACCAACATGATAACCATCT+GGG | - | chr8_4:44417657-44417676 | None:intergenic | 35.0% | |
| TTACCAACATGATAACCATC+TGG | - | chr8_4:44417658-44417677 | None:intergenic | 35.0% | |
| ! | GTCAATGCTTTCGAGTAAAT+TGG | + | chr8_4:44417679-44417698 | Msa1327320:CDS | 35.0% |
| GAAGTGCAAAATCGTTGAAA+TGG | + | chr8_4:44417772-44417791 | Msa1327320:CDS | 35.0% | |
| TAGTTTATTCCATAGGGAGA+TGG | - | chr8_4:44417965-44417984 | None:intergenic | 35.0% | |
| !!! | GATTTTTGAAAGTGTTCCTG+CGG | + | chr8_4:44418011-44418030 | Msa1327320:CDS | 35.0% |
| !! | TTGAGAGTCGACTTGAAATA+TGG | + | chr8_4:44418318-44418337 | Msa1327320:intron | 35.0% |
| !!! | TCGTGTTTTTTGAAAGGTGT+AGG | - | chr8_4:44418772-44418791 | None:intergenic | 35.0% |
| AAATGGGAGTAGTAGTAGTA+AGG | - | chr8_4:44418859-44418878 | None:intergenic | 35.0% | |
| CTCATTGTATGGAGTTGAAA+TGG | - | chr8_4:44418876-44418895 | None:intergenic | 35.0% | |
| TTTGTGTGGTTCTTCACAAA+AGG | + | chr8_4:44418898-44418917 | Msa1327320:CDS | 35.0% | |
| TTGTGTGGTTCTTCACAAAA+GGG | + | chr8_4:44418899-44418918 | Msa1327320:CDS | 35.0% | |
| ! | AAAGCATCTGGTCATAGTTA+TGG | + | chr8_4:44419091-44419110 | Msa1327320:CDS | 35.0% |
| GTGTTGGAATGGATACAACA+AGG | - | chr8_4:44415685-44415704 | None:intergenic | 40.0% | |
| GGGTTATAGTTGTGTTGGAA+TGG | - | chr8_4:44415696-44415715 | None:intergenic | 40.0% | |
| AAAACCAAGGAAAAGGGTTG+TGG | - | chr8_4:44415751-44415770 | None:intergenic | 40.0% | |
| AATGAGGATGGAAGAGGAAA+AGG | - | chr8_4:44415850-44415869 | None:intergenic | 40.0% | |
| AGGTTTCTGCAATCTTGAAG+TGG | + | chr8_4:44415939-44415958 | Msa1327320:CDS | 40.0% | |
| TGGAGAAGAAACTTTCATGG+TGG | + | chr8_4:44415969-44415988 | Msa1327320:CDS | 40.0% | |
| AAAGTGTATGTCTGGTAGCA+CGG | + | chr8_4:44416009-44416028 | Msa1327320:intron | 40.0% | |
| AACCAGTATGACTTTGAGTC+TGG | + | chr8_4:44416121-44416140 | Msa1327320:intron | 40.0% | |
| TTCCAGACTCAAAGTCATAC+TGG | - | chr8_4:44416126-44416145 | None:intergenic | 40.0% | |
| !! | TTTCACTTTCTAGCTACCCT+TGG | + | chr8_4:44416460-44416479 | Msa1327320:intron | 40.0% |
| CACCTAAATAGCAGTGAAGT+GGG | + | chr8_4:44416525-44416544 | Msa1327320:intron | 40.0% | |
| ACCTAAATAGCAGTGAAGTG+GGG | + | chr8_4:44416526-44416545 | Msa1327320:intron | 40.0% | |
| GTGGTTAGTGAAAGTAGTGA+AGG | - | chr8_4:44416585-44416604 | None:intergenic | 40.0% | |
| CACATTTAATGCTGCTGCTA+TGG | + | chr8_4:44416670-44416689 | Msa1327320:intron | 40.0% | |
| TAGAATGAGGGTGAGTATCA+AGG | - | chr8_4:44416841-44416860 | None:intergenic | 40.0% | |
| ! | CAAACTGAAAAGTCGGTTCA+AGG | + | chr8_4:44417362-44417381 | Msa1327320:CDS | 40.0% |
| !! | CGGTTCAAGGGATTAGTTAT+TGG | + | chr8_4:44417375-44417394 | Msa1327320:CDS | 40.0% |
| !! | TGTGATGCTAGAGAAGTGTT+TGG | + | chr8_4:44417460-44417479 | Msa1327320:CDS | 40.0% |
| AAGTGTTTGGATGCTGTAGT+TGG | + | chr8_4:44417473-44417492 | Msa1327320:CDS | 40.0% | |
| AGTGTTTGGATGCTGTAGTT+GGG | + | chr8_4:44417474-44417493 | Msa1327320:CDS | 40.0% | |
| AGTTGTTCGAATGACAGTTC+AGG | + | chr8_4:44417536-44417555 | Msa1327320:CDS | 40.0% | |
| GTTGTTCGAATGACAGTTCA+GGG | + | chr8_4:44417537-44417556 | Msa1327320:CDS | 40.0% | |
| CGAATTTCACTCGTTCAACA+TGG | + | chr8_4:44417603-44417622 | Msa1327320:CDS | 40.0% | |
| ATTTCACTCGTTCAACATGG+TGG | + | chr8_4:44417606-44417625 | Msa1327320:CDS | 40.0% | |
| ACCAACATGATAACCATCTG+GGG | - | chr8_4:44417656-44417675 | None:intergenic | 40.0% | |
| AAAGAATCCCTAGCAGAATC+TGG | - | chr8_4:44418166-44418185 | None:intergenic | 40.0% | |
| TGATGAACTCTACCATGCAA+TGG | + | chr8_4:44418186-44418205 | Msa1327320:CDS | 40.0% | |
| !!! | TAGTTTTGTAGGGTCGTGTT+AGG | + | chr8_4:44418390-44418409 | Msa1327320:intron | 40.0% |
| GGATGTACCTATAACAGAAG+AGG | - | chr8_4:44418677-44418696 | None:intergenic | 40.0% | |
| GAACGGATAAAGATATGCTG+TGG | + | chr8_4:44418713-44418732 | Msa1327320:intron | 40.0% | |
| CCACACAAAGACTCATTGTA+TGG | - | chr8_4:44418887-44418906 | None:intergenic | 40.0% | |
| CCATACAATGAGTCTTTGTG+TGG | + | chr8_4:44418884-44418903 | Msa1327320:CDS | 40.0% | |
| GAACAAGTTGTGTTGTATGC+TGG | + | chr8_4:44418941-44418960 | Msa1327320:CDS | 40.0% | |
| AACATTTGCAAGGAATGCAG+TGG | + | chr8_4:44419002-44419021 | Msa1327320:CDS | 40.0% | |
| CGGTTGGGTTATAGTTGTGT+TGG | - | chr8_4:44415701-44415720 | None:intergenic | 45.0% | |
| GGAAAAGGGTTGTGGTCAAT+TGG | - | chr8_4:44415743-44415762 | None:intergenic | 45.0% | |
| ! | TTGACCACAACCCTTTTCCT+TGG | + | chr8_4:44415744-44415763 | Msa1327320:five_prime_UTR | 45.0% |
| CGGTAGATTCGTCGAAATCA+TGG | + | chr8_4:44416029-44416048 | Msa1327320:intron | 45.0% | |
| GCACCTAAATAGCAGTGAAG+TGG | + | chr8_4:44416524-44416543 | Msa1327320:intron | 45.0% | |
| ! | GGAAAATCTAGTGGTGGAAG+TGG | + | chr8_4:44417158-44417177 | Msa1327320:CDS | 45.0% |
| ! | GCATTGTGCTGCTGAATACA+TGG | + | chr8_4:44417298-44417317 | Msa1327320:CDS | 45.0% |
| !! | TGTAGTTGGGAGGTTGGTTT+CGG | + | chr8_4:44417487-44417506 | Msa1327320:CDS | 45.0% |
| CTGTCATTCGAACAACTCGA+GGG | - | chr8_4:44417533-44417552 | None:intergenic | 45.0% | |
| ACTGTCATTCGAACAACTCG+AGG | - | chr8_4:44417534-44417553 | None:intergenic | 45.0% | |
| CGAATGACAGTTCAGGGATT+AGG | + | chr8_4:44417543-44417562 | Msa1327320:CDS | 45.0% | |
| !!! | CTTGTTTTTGACTCCCCAGA+TGG | + | chr8_4:44417640-44417659 | Msa1327320:CDS | 45.0% |
| TCCCCAGATGGTTATCATGT+TGG | + | chr8_4:44417652-44417671 | Msa1327320:CDS | 45.0% | |
| CTTCTCATCTGTAGTAGCAG+TGG | - | chr8_4:44417756-44417775 | None:intergenic | 45.0% | |
| TTGCTTGTTCCATCTCCCTA+TGG | + | chr8_4:44417953-44417972 | Msa1327320:CDS | 45.0% | |
| AGCAACTTTCCGCATCTGAA+CGG | - | chr8_4:44418059-44418078 | None:intergenic | 45.0% | |
| AGCTCTTCCAGATTCTGCTA+GGG | + | chr8_4:44418156-44418175 | Msa1327320:CDS | 45.0% | |
| CGAGATACATGTCCATTGCA+TGG | - | chr8_4:44418201-44418220 | None:intergenic | 45.0% | |
| TGCAATGGACATGTATCTCG+AGG | + | chr8_4:44418201-44418220 | Msa1327320:CDS | 45.0% | |
| GTAAAACATCGTCACGCTGT+TGG | - | chr8_4:44418542-44418561 | None:intergenic | 45.0% | |
| CTCAACTCTCACAAGACGAA+CGG | + | chr8_4:44418696-44418715 | Msa1327320:intron | 45.0% | |
| !! | GCTTGAACTGCTGATTTCGA+TGG | - | chr8_4:44418800-44418819 | None:intergenic | 45.0% |
| ATTTGCAAGGAATGCAGTGG+AGG | + | chr8_4:44419005-44419024 | Msa1327320:CDS | 45.0% | |
| TTTGCAAGGAATGCAGTGGA+GGG | + | chr8_4:44419006-44419025 | Msa1327320:CDS | 45.0% | |
| GAGACAGAAGTAGTGCGGTT+GGG | - | chr8_4:44415716-44415735 | None:intergenic | 50.0% | |
| AGAGACAGAAGTAGTGCGGT+TGG | - | chr8_4:44415717-44415736 | None:intergenic | 50.0% | |
| GTGCAGAGACAGAAGTAGTG+CGG | - | chr8_4:44415721-44415740 | None:intergenic | 50.0% | |
| ! | GCCCCACTTCACTGCTATTT+AGG | - | chr8_4:44416530-44416549 | None:intergenic | 50.0% |
| CTGCACCTCCTGGAAAATCA+TGG | - | chr8_4:44417202-44417221 | None:intergenic | 50.0% | |
| !! | GATTTTCCAGGAGGTGCAGA+AGG | + | chr8_4:44417203-44417222 | Msa1327320:CDS | 50.0% |
| TCAAAACCTTCTGCACCTCC+TGG | - | chr8_4:44417212-44417231 | None:intergenic | 50.0% | |
| TGCGCGAGTAACAGATTCGA+AGG | - | chr8_4:44417281-44417300 | None:intergenic | 50.0% | |
| GTTTGGATGCTGTAGTTGGG+AGG | + | chr8_4:44417477-44417496 | Msa1327320:CDS | 50.0% | |
| TTCGAACAACTCGAGGGACA+CGG | - | chr8_4:44417527-44417546 | None:intergenic | 50.0% | |
| !! | TTGAAAGTGTTCCTGCGGCA+AGG | + | chr8_4:44418016-44418035 | Msa1327320:CDS | 50.0% |
| GCAACTTTCCGCATCTGAAC+GGG | - | chr8_4:44418058-44418077 | None:intergenic | 50.0% | |
| CAGCTCTTCCAGATTCTGCT+AGG | + | chr8_4:44418155-44418174 | Msa1327320:CDS | 50.0% | |
| CGTTCGTCTTGTGAGAGTTG+AGG | - | chr8_4:44418698-44418717 | None:intergenic | 50.0% | |
| ! | GAAAGGTGTAGGCATGCTTG+AGG | - | chr8_4:44418761-44418780 | None:intergenic | 50.0% |
| AGGAATGCAGTGGAGGGTTA+TGG | + | chr8_4:44419012-44419031 | Msa1327320:CDS | 50.0% | |
| GGATGCTGTAGTTGGGAGGT+TGG | + | chr8_4:44417481-44417500 | Msa1327320:CDS | 55.0% | |
| GTGTTCCTGCGGCAAGGAAC+TGG | + | chr8_4:44418022-44418041 | Msa1327320:CDS | 60.0% | |
| CGGTTGCTCCCGTTCAGATG+CGG | + | chr8_4:44418047-44418066 | Msa1327320:CDS | 60.0% | |
| CCTGCGGCAAGGAACTGGTG+CGG | + | chr8_4:44418027-44418046 | Msa1327320:CDS | 65.0% | |
| CCGCACCAGTTCCTTGCCGC+AGG | - | chr8_4:44418030-44418049 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 44415613 | 44419141 | 44415613 | ID=Msa1327320;Name=Msa1327320 |
| chr8_4 | mRNA | 44415613 | 44419141 | 44415613 | ID=Msa1327320-mRNA-1;Parent=Msa1327320;Name=Msa1327320-mRNA-1;_AED=0.20;_eAED=0.21;_QI=318|0.5|0.66|1|1|1|3|0|492 |
| chr8_4 | exon | 44415613 | 44415996 | 44415613 | ID=Msa1327320-mRNA-1:exon:12442;Parent=Msa1327320-mRNA-1 |
| chr8_4 | exon | 44417116 | 44418222 | 44417116 | ID=Msa1327320-mRNA-1:exon:12443;Parent=Msa1327320-mRNA-1 |
| chr8_4 | exon | 44418836 | 44419141 | 44418836 | ID=Msa1327320-mRNA-1:exon:12444;Parent=Msa1327320-mRNA-1 |
| chr8_4 | five_prime_UTR | 44415613 | 44415930 | 44415613 | ID=Msa1327320-mRNA-1:five_prime_utr;Parent=Msa1327320-mRNA-1 |
| chr8_4 | CDS | 44415931 | 44415996 | 44415931 | ID=Msa1327320-mRNA-1:cds;Parent=Msa1327320-mRNA-1 |
| chr8_4 | CDS | 44417116 | 44418222 | 44417116 | ID=Msa1327320-mRNA-1:cds;Parent=Msa1327320-mRNA-1 |
| chr8_4 | CDS | 44418836 | 44419141 | 44418836 | ID=Msa1327320-mRNA-1:cds;Parent=Msa1327320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
