Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0084000 | XP_013469384.1 | 97.041 | 507 | 8 | 3 | 1 | 506 | 1 | 501 | 0.0 | 1024 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0084000 | sp|Q9LZS0|PTL_ARATH | 42.455 | 391 | 176 | 9 | 119 | 482 | 119 | 487 | 1.77e-84 | 275 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0084000 | A0A072VNQ7 | 97.041 | 507 | 8 | 3 | 1 | 506 | 1 | 501 | 0.0 | 1024 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0084000 | TF | Trihelix |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016120 | Msa0084000 | 0.804687 | 1.916571e-49 | -8.615850e-47 |
| Msa0053110 | Msa0084000 | 0.800517 | 1.388778e-48 | -8.615850e-47 |
| Msa0084000 | Msa0130160 | 0.844172 | 8.914123e-59 | -8.615850e-47 |
| Msa0084000 | Msa0156250 | 0.802071 | 6.676640e-49 | -8.615850e-47 |
| Msa0084000 | Msa0337850 | 0.800984 | 1.115352e-48 | -8.615850e-47 |
| Msa0084000 | Msa0359250 | 0.816505 | 5.342723e-52 | -8.615850e-47 |
| Msa0084000 | Msa0370600 | 0.800817 | 1.206145e-48 | -8.615850e-47 |
| Msa0084000 | Msa0406000 | 0.807362 | 5.245035e-50 | -8.615850e-47 |
| Msa0084000 | Msa0418200 | 0.809556 | 1.784726e-50 | -8.615850e-47 |
| Msa0084000 | Msa0451400 | 0.815405 | 9.401138e-52 | -8.615850e-47 |
| Msa0084000 | Msa0464540 | 0.802664 | 5.039193e-49 | -8.615850e-47 |
| Msa0084000 | Msa0537920 | 0.814979 | 1.169270e-51 | -8.615850e-47 |
| Msa0084000 | Msa0538220 | 0.803136 | 4.026690e-49 | -8.615850e-47 |
| Msa0084000 | Msa0688500 | 0.810151 | 1.329415e-50 | -8.615850e-47 |
| Msa0084000 | Msa0737190 | 0.803423 | 3.510296e-49 | -8.615850e-47 |
| Msa0084000 | Msa0747780 | 0.813498 | 2.483430e-51 | -8.615850e-47 |
| Msa0084000 | Msa0754030 | 0.811402 | 7.126944e-51 | -8.615850e-47 |
| Msa0084000 | Msa0778930 | 0.805139 | 1.541795e-49 | -8.615850e-47 |
| Msa0084000 | Msa0807110 | 0.822658 | 2.105398e-53 | -8.615850e-47 |
| Msa0084000 | Msa0833040 | 0.822786 | 1.965852e-53 | -8.615850e-47 |
| Msa0084000 | Msa0867350 | 0.830434 | 2.943868e-55 | -8.615850e-47 |
| Msa0084000 | Msa0898730 | 0.819637 | 1.046064e-52 | -8.615850e-47 |
| Msa0084000 | Msa0999300 | 0.840081 | 1.077986e-57 | -8.615850e-47 |
| Msa0084000 | Msa1001890 | 0.810322 | 1.221037e-50 | -8.615850e-47 |
| Msa0084000 | Msa1041530 | 0.824920 | 6.213941e-54 | -8.615850e-47 |
| Msa0084000 | Msa1081570 | 0.818997 | 1.463543e-52 | -8.615850e-47 |
| Msa0084000 | Msa1123880 | 0.809458 | 1.873523e-50 | -8.615850e-47 |
| Msa0084000 | Msa1127140 | 0.824460 | 7.976103e-54 | -8.615850e-47 |
| Msa0084000 | Msa1129960 | 0.805418 | 1.347559e-49 | -8.615850e-47 |
| Msa0084000 | Msa1166400 | 0.807241 | 5.565608e-50 | -8.615850e-47 |
| Msa0084000 | Msa1176160 | 0.833479 | 5.209701e-56 | -8.615850e-47 |
| Msa0084000 | Msa1307190 | 0.833087 | 6.522830e-56 | -8.615850e-47 |
| Msa0084000 | Msa1355400 | 0.808116 | 3.627551e-50 | -8.615850e-47 |
| Msa0084000 | Msa1408870 | 0.822202 | 2.687166e-53 | -8.615850e-47 |
| Msa0084000 | Msa1414930 | 0.804479 | 2.117636e-49 | -8.615850e-47 |
| Msa0084000 | Msa1420060 | 0.819562 | 1.088131e-52 | -8.615850e-47 |
| Msa0084000 | Msa1421550 | 0.829540 | 4.862835e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0084000 | MtrunA17_Chr1g0198171 | 97.041 | 507 | 8 | 3 | 1 | 506 | 1 | 501 | 0.0 | 1024 |
| Msa0084000 | MtrunA17_Chr7g0265831 | 46.284 | 296 | 129 | 9 | 98 | 387 | 95 | 366 | 7.79e-75 | 244 |
| Msa0084000 | MtrunA17_Chr1g0179191 | 39.461 | 408 | 181 | 15 | 10 | 403 | 27 | 382 | 6.95e-74 | 242 |
| Msa0084000 | MtrunA17_Chr1g0201941 | 34.853 | 307 | 153 | 10 | 118 | 384 | 56 | 355 | 9.78e-42 | 158 |
| Msa0084000 | MtrunA17_Chr1g0201941 | 40.541 | 111 | 62 | 3 | 99 | 208 | 436 | 543 | 3.78e-19 | 90.9 |
| Msa0084000 | MtrunA17_Chr6g0463941 | 61.957 | 92 | 34 | 1 | 118 | 209 | 54 | 144 | 2.04e-31 | 128 |
| Msa0084000 | MtrunA17_Chr6g0463941 | 44.330 | 97 | 52 | 2 | 115 | 210 | 460 | 555 | 8.93e-19 | 89.7 |
| Msa0084000 | MtrunA17_Chr1g0201911 | 56.604 | 106 | 45 | 1 | 100 | 205 | 36 | 140 | 4.21e-30 | 124 |
| Msa0084000 | MtrunA17_Chr1g0201911 | 47.525 | 101 | 51 | 2 | 111 | 210 | 364 | 463 | 3.31e-19 | 90.9 |
| Msa0084000 | MtrunA17_Chr2g0290511 | 27.193 | 228 | 116 | 8 | 308 | 493 | 114 | 333 | 2.88e-14 | 74.3 |
| Msa0084000 | MtrunA17_Chr2g0290511 | 39.785 | 93 | 54 | 2 | 114 | 205 | 257 | 348 | 2.13e-13 | 71.6 |
| Msa0084000 | MtrunA17_Chr7g0273941 | 41.237 | 97 | 46 | 3 | 119 | 205 | 381 | 476 | 1.58e-13 | 72.8 |
| Msa0084000 | MtrunA17_Chr1g0190851 | 45.122 | 82 | 42 | 2 | 111 | 190 | 410 | 490 | 5.10e-12 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0084000 | AT5G03680.1 | 42.455 | 391 | 176 | 9 | 119 | 482 | 119 | 487 | 1.80e-85 | 275 |
| Msa0084000 | AT3G10000.1 | 38.525 | 366 | 194 | 11 | 40 | 400 | 15 | 354 | 1.18e-64 | 218 |
| Msa0084000 | AT3G10000.2 | 36.612 | 366 | 191 | 12 | 40 | 400 | 15 | 344 | 2.81e-56 | 195 |
| Msa0084000 | AT1G76890.2 | 31.696 | 448 | 215 | 12 | 115 | 489 | 37 | 466 | 1.80e-49 | 179 |
| Msa0084000 | AT1G76890.2 | 40.000 | 160 | 78 | 8 | 89 | 234 | 360 | 515 | 1.51e-19 | 92.4 |
| Msa0084000 | AT1G76880.1 | 54.701 | 117 | 46 | 2 | 98 | 214 | 46 | 155 | 8.65e-31 | 126 |
| Msa0084000 | AT1G76880.1 | 45.361 | 97 | 51 | 2 | 115 | 210 | 404 | 499 | 8.34e-18 | 87.0 |
| Msa0084000 | AT1G33240.1 | 44.318 | 88 | 47 | 2 | 119 | 205 | 435 | 521 | 2.89e-15 | 79.3 |
| Msa0084000 | AT1G33240.3 | 44.318 | 88 | 47 | 2 | 119 | 205 | 435 | 521 | 3.13e-15 | 79.0 |
| Msa0084000 | AT1G33240.2 | 44.318 | 88 | 47 | 2 | 119 | 205 | 396 | 482 | 4.08e-15 | 78.6 |
| Msa0084000 | AT5G28300.1 | 37.288 | 118 | 56 | 5 | 103 | 209 | 449 | 559 | 4.45e-13 | 72.0 |
Find 113 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTGGCTCTTACTCTTATT+TGG | 0.155961 | 1_2:+63192740 | None:intergenic |
| TTGTTGTATCATTTGCTTCT+TGG | 0.177243 | 1_2:+63192723 | None:intergenic |
| TTATTTATATGTTTGGATTA+AGG | 0.199931 | 1_2:-63192061 | None:intergenic |
| TGCATTTCTTTCCACTTCTT+TGG | 0.203428 | 1_2:+63193431 | None:intergenic |
| AGGATAATGGCTGAGGAATT+TGG | 0.204963 | 1_2:-63193457 | Msa0084000:CDS |
| CCTTGTGGAATGAAATTTCT+AGG | 0.236619 | 1_2:-63194471 | Msa0084000:intron |
| GAACATCAAGTAAGAGAAAA+AGG | 0.239292 | 1_2:-63192611 | Msa0084000:CDS |
| AGGTGAAAGGATGGTTTATA+TGG | 0.259177 | 1_2:-63192558 | Msa0084000:CDS |
| TTTGGTTCTGAGCATGAAAA+AGG | 0.260495 | 1_2:-63192356 | Msa0084000:three_prime_UTR |
| GATATTTGGATGATGGAGTT+TGG | 0.262012 | 1_2:-63192589 | Msa0084000:CDS |
| AAACACAAGGCCTTGGTGTT+TGG | 0.270837 | 1_2:-63192450 | Msa0084000:CDS |
| GAGCTGAGTGCAAGAAAATA+TGG | 0.284773 | 1_2:-63192520 | Msa0084000:CDS |
| AACACAAGGCCTTGGTGTTT+GGG | 0.305639 | 1_2:-63192449 | Msa0084000:CDS |
| TCTACTAGCTTTACCTTCCT+TGG | 0.314459 | 1_2:+63193369 | None:intergenic |
| GATCTTCTTGTTTAGGATAA+TGG | 0.314988 | 1_2:-63193470 | Msa0084000:intron |
| AAGTATATTATTTATATGTT+TGG | 0.318515 | 1_2:-63192068 | Msa0084000:three_prime_UTR |
| ATCATATTTATGAACTTTGT+AGG | 0.329585 | 1_2:-63192146 | Msa0084000:three_prime_UTR |
| TGGTTTATATGGGATTTAAT+AGG | 0.331668 | 1_2:-63192547 | Msa0084000:CDS |
| ATAGGGTCATAGGAATAATT+TGG | 0.333734 | 1_2:+63194787 | None:intergenic |
| ATCAAGAAATACATGAACTT+TGG | 0.336932 | 1_2:-63192847 | Msa0084000:CDS |
| GGATAATGGCTGAGGAATTT+GGG | 0.344397 | 1_2:-63193456 | Msa0084000:CDS |
| GGGTCATTGACTTGCAAGTT+TGG | 0.355678 | 1_2:-63192335 | Msa0084000:three_prime_UTR |
| GGTTTAGAAACTTCTGATAA+AGG | 0.359679 | 1_2:-63194610 | Msa0084000:CDS |
| AAAACATCACCAACTATCAT+AGG | 0.369956 | 1_2:+63194769 | None:intergenic |
| GAGAAGATGAGTGACCTATA+TGG | 0.371968 | 1_2:-63194916 | Msa0084000:exon |
| ATATTTGGATGATGGAGTTT+GGG | 0.376772 | 1_2:-63192588 | Msa0084000:CDS |
| GATGGAGTTTGGGATGAAAT+AGG | 0.383462 | 1_2:-63192578 | Msa0084000:CDS |
| TCAAGAAATACATGAACTTT+GGG | 0.384682 | 1_2:-63192846 | Msa0084000:CDS |
| GTAGCAACAAAGGAAGCATT+TGG | 0.401281 | 1_2:+63193250 | None:intergenic |
| GCAGCTATAGTGGTATTTGT+AGG | 0.401800 | 1_2:+63194694 | None:intergenic |
| GAAGTTGTAAGAAAACATAT+TGG | 0.406391 | 1_2:-63192779 | Msa0084000:CDS |
| TCCTATGACCCTATGATAGT+TGG | 0.417353 | 1_2:-63194778 | Msa0084000:CDS |
| AAGTTGTAAGAAAACATATT+GGG | 0.418479 | 1_2:-63192778 | Msa0084000:CDS |
| TAGCAACAAAGGAAGCATTT+GGG | 0.426061 | 1_2:+63193251 | None:intergenic |
| GAGGCATGAGAGTTTGTGTT+TGG | 0.435521 | 1_2:+63193292 | None:intergenic |
| TTTCAAATTTGATACAACTA+AGG | 0.436534 | 1_2:-63192643 | Msa0084000:CDS |
| GAACCACCACCTTGTTTGTA+TGG | 0.437886 | 1_2:-63194832 | Msa0084000:CDS |
| AGAAAGGGCAAAGTGGTCAT+AGG | 0.438060 | 1_2:-63193045 | Msa0084000:CDS |
| ATATTAGTATGTCTCTTAGA+AGG | 0.438578 | 1_2:-63192493 | Msa0084000:CDS |
| TATATGGGATTTAATAGGAA+TGG | 0.452119 | 1_2:-63192542 | Msa0084000:CDS |
| GATCCTCCGGTAGCCCATAT+AGG | 0.456344 | 1_2:+63194902 | None:intergenic |
| ACCAACTATCATAGGGTCAT+AGG | 0.456713 | 1_2:+63194777 | None:intergenic |
| ATATTATCCACACTTTCAAA+AGG | 0.458934 | 1_2:+63192689 | None:intergenic |
| GCTTCTACTGCATTCTGTGT+AGG | 0.459654 | 1_2:-63194631 | Msa0084000:CDS |
| TATTCATAGATGGACAGAAA+TGG | 0.466542 | 1_2:-63192669 | Msa0084000:CDS |
| AGAAGATGAGTGACCTATAT+GGG | 0.473607 | 1_2:-63194915 | Msa0084000:exon |
| ATTAACCAAGAAAATACTAA+TGG | 0.483532 | 1_2:-63193208 | Msa0084000:CDS |
| ATCAACCGCCGGAGATCCTC+CGG | 0.484296 | 1_2:+63194889 | None:intergenic |
| TTATTGAGACTCAAGATGCT+TGG | 0.485535 | 1_2:-63192961 | Msa0084000:CDS |
| ATGAAGTCGTCGAAGGAGAA+AGG | 0.490837 | 1_2:-63193061 | Msa0084000:CDS |
| AAACAAGGTGGTGGTTCTGC+TGG | 0.491751 | 1_2:+63194838 | None:intergenic |
| GGTGAAAGGATGGTTTATAT+GGG | 0.497182 | 1_2:-63192557 | Msa0084000:CDS |
| GGATGAAATAGGTGAAAGGA+TGG | 0.499715 | 1_2:-63192567 | Msa0084000:CDS |
| GTGTGGATAATATTCATAGA+TGG | 0.500320 | 1_2:-63192679 | Msa0084000:CDS |
| CTTGTTTAGGATAATGGCTG+AGG | 0.502416 | 1_2:-63193464 | Msa0084000:intron |
| ATAGGAGGGCAAGGAAAAGT+TGG | 0.504848 | 1_2:-63193027 | Msa0084000:CDS |
| ACTTCTGATAAAGGATGGCT+TGG | 0.509259 | 1_2:-63194601 | Msa0084000:CDS |
| TATTATCCACACTTTCAAAA+GGG | 0.515340 | 1_2:+63192690 | None:intergenic |
| TTGATTCATGTAACAACAGA+TGG | 0.515630 | 1_2:-63194573 | Msa0084000:CDS |
| TAGAAACTTCTGATAAAGGA+TGG | 0.515925 | 1_2:-63194606 | Msa0084000:CDS |
| CAGCTATAGTGGTATTTGTA+GGG | 0.519351 | 1_2:+63194695 | None:intergenic |
| TAGCATCAAAGGAAGAAGAA+AGG | 0.522634 | 1_2:-63192895 | Msa0084000:CDS |
| TGAGACTCAAGATGCTTGGA+TGG | 0.522893 | 1_2:-63192957 | Msa0084000:CDS |
| AGACAGCTTGAAGCAATATG+TGG | 0.533898 | 1_2:-63193319 | Msa0084000:CDS |
| TGAAGTCGTCGAAGGAGAAA+GGG | 0.536001 | 1_2:-63193060 | Msa0084000:CDS |
| TTAGACTTTGTGAATACTTG+TGG | 0.538073 | 1_2:+63193161 | None:intergenic |
| GTTTATTATTTATGTATGTG+TGG | 0.539307 | 1_2:-63192107 | Msa0084000:three_prime_UTR |
| AGAACAAGAGATAGCATCAA+AGG | 0.542656 | 1_2:-63192906 | Msa0084000:CDS |
| GGAAGAGAAAAGAGTCAATG+AGG | 0.550829 | 1_2:-63192874 | Msa0084000:CDS |
| AGAGAAAGAGTCTCTTGTCT+AGG | 0.553492 | 1_2:+63194550 | None:intergenic |
| ATGGGCTACCGGAGGATCTC+CGG | 0.559641 | 1_2:-63194897 | Msa0084000:CDS |
| AAACATCACCAACTATCATA+GGG | 0.561437 | 1_2:+63194770 | None:intergenic |
| TTGAGTTTGAGTAGCAACAA+AGG | 0.562015 | 1_2:+63193240 | None:intergenic |
| AAGGGCAAAGTGGTCATAGG+AGG | 0.562963 | 1_2:-63193042 | Msa0084000:CDS |
| GAGTGACCTATATGGGCTAC+CGG | 0.564245 | 1_2:-63194908 | Msa0084000:CDS |
| GGTATTTGTAGGGTTAACAG+TGG | 0.564956 | 1_2:+63194705 | None:intergenic |
| GGTAAAGCTAGTAGACAAGA+TGG | 0.568681 | 1_2:-63193361 | Msa0084000:CDS |
| CCTAGAAATTTCATTCCACA+AGG | 0.573860 | 1_2:+63194471 | None:intergenic |
| TCATAGGAATAATTTGGTGG+AGG | 0.577820 | 1_2:+63194793 | None:intergenic |
| GAATTTGGGTACCAAAGAAG+TGG | 0.582190 | 1_2:-63193442 | Msa0084000:CDS |
| CAGTGGAGGAATAGTCATAG+TGG | 0.586600 | 1_2:+63194722 | None:intergenic |
| TTGATGATGTTATCAACCGC+CGG | 0.588660 | 1_2:+63194878 | None:intergenic |
| AGGGCAAGGAAAAGTTGGAG+AGG | 0.591096 | 1_2:-63193022 | Msa0084000:CDS |
| ATTTGTAGGGTTAACAGTGG+AGG | 0.594970 | 1_2:+63194708 | None:intergenic |
| AGCTGAGTGCAAGAAAATAT+GGG | 0.595363 | 1_2:-63192519 | Msa0084000:CDS |
| AGCAACAAAGGAAGCATTTG+GGG | 0.599234 | 1_2:+63193252 | None:intergenic |
| TTTGGGATGAAATAGGTGAA+AGG | 0.600563 | 1_2:-63192571 | Msa0084000:CDS |
| TATTACAAGAAGACCAAGGA+AGG | 0.601931 | 1_2:-63193382 | Msa0084000:CDS |
| GGGTCATAGGAATAATTTGG+TGG | 0.603660 | 1_2:+63194790 | None:intergenic |
| AAGTTGGAGAGGTAAAGTTG+AGG | 0.607935 | 1_2:-63193011 | Msa0084000:CDS |
| ATAATCAGAAAGCACCCTTG+TGG | 0.619380 | 1_2:-63194486 | Msa0084000:CDS |
| AGGTGTGTAAGACTCTAGCT+AGG | 0.621926 | 1_2:-63192296 | Msa0084000:three_prime_UTR |
| AAAGTGGTCATAGGAGGGCA+AGG | 0.623960 | 1_2:-63193036 | Msa0084000:CDS |
| GGTGAGTGAAGCTACTACGA+GGG | 0.624158 | 1_2:+63194743 | None:intergenic |
| CTTAGAAGGACAGTGGACTG+TGG | 0.637596 | 1_2:-63192479 | Msa0084000:CDS |
| AAGAAGTGGAAAGAAATGCA+AGG | 0.641850 | 1_2:-63193428 | Msa0084000:CDS |
| AGGGCAAAGTGGTCATAGGA+GGG | 0.643035 | 1_2:-63193041 | Msa0084000:CDS |
| TTGGTTCATTGAAAATCACA+AGG | 0.643246 | 1_2:-63192316 | Msa0084000:three_prime_UTR |
| CCACCATACAAACAAGGTGG+TGG | 0.656823 | 1_2:+63194829 | None:intergenic |
| ACACACTATGAAGTCGTCGA+AGG | 0.660577 | 1_2:-63193068 | Msa0084000:CDS |
| TATGTCTCTTAGAAGGACAG+TGG | 0.662720 | 1_2:-63192486 | Msa0084000:CDS |
| CTCATCTGAAAACAACGATG+AGG | 0.668787 | 1_2:-63193107 | Msa0084000:CDS |
| CCACCACCTTGTTTGTATGG+TGG | 0.671674 | 1_2:-63194829 | Msa0084000:CDS |
| AGCTTAAGTCCCAAACACCA+AGG | 0.671681 | 1_2:+63192440 | None:intergenic |
| AATTTGATACAACTAAGGAG+TGG | 0.674782 | 1_2:-63192638 | Msa0084000:CDS |
| TCGAAGGAGAAAGGGCAAAG+TGG | 0.682624 | 1_2:-63193052 | Msa0084000:CDS |
| GCAACACCACCATACAAACA+AGG | 0.686159 | 1_2:+63194823 | None:intergenic |
| GGCTACCGGAGGATCTCCGG+CGG | 0.699131 | 1_2:-63194894 | Msa0084000:CDS |
| TGACCTATATGGGCTACCGG+AGG | 0.701402 | 1_2:-63194905 | Msa0084000:CDS |
| CAAGTATTACAAGAAGACCA+AGG | 0.709647 | 1_2:-63193386 | Msa0084000:CDS |
| CTAGAAATTTCATTCCACAA+GGG | 0.711484 | 1_2:+63194472 | None:intergenic |
| TGGTGAGTGAAGCTACTACG+AGG | 0.746302 | 1_2:+63194742 | None:intergenic |
| ACACCACCATACAAACAAGG+TGG | 0.760464 | 1_2:+63194826 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTTCACTTTTTTTTT+TGG | - | chr1_2:63192614-63192633 | Msa0084000:CDS | 10.0% |
| !! | TTAAATTTAAATTGTAGTTA+CGG | - | chr1_2:63193251-63193270 | Msa0084000:CDS | 10.0% |
| !!! | TGTTTTTTTTAAGTTTAAAT+AGG | - | chr1_2:63194754-63194773 | Msa0084000:CDS | 10.0% |
| !! | AAGTATATTATTTATATGTT+TGG | - | chr1_2:63194954-63194973 | Msa0084000:five_prime_UTR | 10.0% |
| !! | ATCATAATAAAAAAAACACA+TGG | + | chr1_2:63192727-63192746 | None:intergenic | 15.0% |
| !! | TTAAACTTAAAAAAAACACA+TGG | + | chr1_2:63194752-63194771 | None:intergenic | 15.0% |
| !! | TTAGTGTCTTAATTAATTAC+TGG | - | chr1_2:63192580-63192599 | Msa0084000:CDS | 20.0% |
| !!! | TTTTGTTTGAAAATATCATG+TGG | - | chr1_2:63193086-63193105 | Msa0084000:CDS | 20.0% |
| !! | ATTAACCAAGAAAATACTAA+TGG | - | chr1_2:63193814-63193833 | Msa0084000:intron | 20.0% |
| !! | AAGTTGTAAGAAAACATATT+GGG | - | chr1_2:63194244-63194263 | Msa0084000:intron | 20.0% |
| !! | TTTCAAATTTGATACAACTA+AGG | - | chr1_2:63194379-63194398 | Msa0084000:intron | 20.0% |
| !!! | TTTTACATTAATTGTGTCAA+AGG | + | chr1_2:63194623-63194642 | None:intergenic | 20.0% |
| !! | ATCATATTTATGAACTTTGT+AGG | - | chr1_2:63194876-63194895 | Msa0084000:CDS | 20.0% |
| !! | GTTTATTATTTATGTATGTG+TGG | - | chr1_2:63194915-63194934 | Msa0084000:exon | 20.0% |
| ! | GACAAAAACGAAAATTATCA+TGG | + | chr1_2:63192679-63192698 | None:intergenic | 25.0% |
| ! | CAATGAATGATTTAGTATCA+TGG | + | chr1_2:63192821-63192840 | None:intergenic | 25.0% |
| ! | AGTATATACAAAACAAAGAC+AGG | + | chr1_2:63192877-63192896 | None:intergenic | 25.0% |
| !! | ATTTTCTTGGTTAATTGTGA+AGG | + | chr1_2:63193809-63193828 | None:intergenic | 25.0% |
| ! | ATCAAGAAATACATGAACTT+TGG | - | chr1_2:63194175-63194194 | Msa0084000:intron | 25.0% |
| ! | TCAAGAAATACATGAACTTT+GGG | - | chr1_2:63194176-63194195 | Msa0084000:intron | 25.0% |
| ! | GAAGTTGTAAGAAAACATAT+TGG | - | chr1_2:63194243-63194262 | Msa0084000:intron | 25.0% |
| ! | TATTATCCACACTTTCAAAA+GGG | + | chr1_2:63194335-63194354 | None:intergenic | 25.0% |
| ! | ATATTATCCACACTTTCAAA+AGG | + | chr1_2:63194336-63194355 | None:intergenic | 25.0% |
| ! | AGTAAGAGAAAAAGGATATT+TGG | - | chr1_2:63194419-63194438 | Msa0084000:intron | 25.0% |
| ! | TGGTTTATATGGGATTTAAT+AGG | - | chr1_2:63194475-63194494 | Msa0084000:CDS | 25.0% |
| ! | TATATGGGATTTAATAGGAA+TGG | - | chr1_2:63194480-63194499 | Msa0084000:CDS | 25.0% |
| ! | ATATTAGTATGTCTCTTAGA+AGG | - | chr1_2:63194529-63194548 | Msa0084000:CDS | 25.0% |
| ATAGGGTCATAGGAATAATT+TGG | + | chr1_2:63192238-63192257 | None:intergenic | 30.0% | |
| AAACATCACCAACTATCATA+GGG | + | chr1_2:63192255-63192274 | None:intergenic | 30.0% | |
| AAAACATCACCAACTATCAT+AGG | + | chr1_2:63192256-63192275 | None:intergenic | 30.0% | |
| GGTTTAGAAACTTCTGATAA+AGG | - | chr1_2:63192412-63192431 | Msa0084000:exon | 30.0% | |
| TAGAAACTTCTGATAAAGGA+TGG | - | chr1_2:63192416-63192435 | Msa0084000:exon | 30.0% | |
| TTGATTCATGTAACAACAGA+TGG | - | chr1_2:63192449-63192468 | Msa0084000:CDS | 30.0% | |
| CTAGAAATTTCATTCCACAA+GGG | + | chr1_2:63192553-63192572 | None:intergenic | 30.0% | |
| !!! | CTGTCATTTTCAATCACAAA+AGG | + | chr1_2:63192648-63192667 | None:intergenic | 30.0% |
| ! | CTTTTGTGATTGAAAATGAC+AGG | - | chr1_2:63192646-63192665 | Msa0084000:CDS | 30.0% |
| GATACTAAATCATTCATTGC+AGG | - | chr1_2:63192822-63192841 | Msa0084000:CDS | 30.0% | |
| ! | TGTTAGTGTTTTGTACTGAA+AGG | + | chr1_2:63193028-63193047 | None:intergenic | 30.0% |
| AAATCAAGTGATACTGTGAT+AGG | + | chr1_2:63193062-63193081 | None:intergenic | 30.0% | |
| TTGAAAATATCATGTGGTCT+TGG | - | chr1_2:63193092-63193111 | Msa0084000:CDS | 30.0% | |
| TGATTGTAATTGAAACCTTC+GGG | + | chr1_2:63193143-63193162 | None:intergenic | 30.0% | |
| GTGATTGTAATTGAAACCTT+CGG | + | chr1_2:63193144-63193163 | None:intergenic | 30.0% | |
| ! | GATCTTCTTGTTTAGGATAA+TGG | - | chr1_2:63193552-63193571 | Msa0084000:intron | 30.0% |
| !! | GGTAATTTTGTCTAAAGTTG+AGG | + | chr1_2:63193752-63193771 | None:intergenic | 30.0% |
| ! | CAACACCATTAGTATTTTCT+TGG | + | chr1_2:63193822-63193841 | None:intergenic | 30.0% |
| TTAGACTTTGTGAATACTTG+TGG | + | chr1_2:63193864-63193883 | None:intergenic | 30.0% | |
| TTGTTGTATCATTTGCTTCT+TGG | + | chr1_2:63194302-63194321 | None:intergenic | 30.0% | |
| GTGTGGATAATATTCATAGA+TGG | - | chr1_2:63194343-63194362 | Msa0084000:intron | 30.0% | |
| TATTCATAGATGGACAGAAA+TGG | - | chr1_2:63194353-63194372 | Msa0084000:intron | 30.0% | |
| AATTTGATACAACTAAGGAG+TGG | - | chr1_2:63194384-63194403 | Msa0084000:intron | 30.0% | |
| GAACATCAAGTAAGAGAAAA+AGG | - | chr1_2:63194411-63194430 | Msa0084000:intron | 30.0% | |
| GAAAAAGGATATTTGGATGA+TGG | - | chr1_2:63194426-63194445 | Msa0084000:intron | 30.0% | |
| !! | ATATTTGGATGATGGAGTTT+GGG | - | chr1_2:63194434-63194453 | Msa0084000:intron | 30.0% |
| TTGGTTCATTGAAAATCACA+AGG | - | chr1_2:63194706-63194725 | Msa0084000:CDS | 30.0% | |
| !! | AATAGGTTTTATGTGTACGT+AGG | - | chr1_2:63194771-63194790 | Msa0084000:CDS | 30.0% |
| AGAAGATGAGTGACCTATAT+GGG | - | chr1_2:63192107-63192126 | Msa0084000:three_prime_UTR | 35.0% | |
| ! | TCATAGGAATAATTTGGTGG+AGG | + | chr1_2:63192232-63192251 | None:intergenic | 35.0% |
| CAGCTATAGTGGTATTTGTA+GGG | + | chr1_2:63192330-63192349 | None:intergenic | 35.0% | |
| CCTAGAAATTTCATTCCACA+AGG | + | chr1_2:63192554-63192573 | None:intergenic | 35.0% | |
| CCTTGTGGAATGAAATTTCT+AGG | - | chr1_2:63192551-63192570 | Msa0084000:CDS | 35.0% | |
| TTCATTGCAGGTGCAAATTA+AGG | - | chr1_2:63192834-63192853 | Msa0084000:CDS | 35.0% | |
| ! | TAGTACAACTTTTTACCCGA+AGG | - | chr1_2:63193125-63193144 | Msa0084000:CDS | 35.0% |
| CCTACAATGCAAAGATTTGT+GGG | + | chr1_2:63193195-63193214 | None:intergenic | 35.0% | |
| TCCTACAATGCAAAGATTTG+TGG | + | chr1_2:63193196-63193215 | None:intergenic | 35.0% | |
| TTTGCATTGTAGGAGATCAA+AGG | - | chr1_2:63193202-63193221 | Msa0084000:CDS | 35.0% | |
| TTGCATTGTAGGAGATCAAA+GGG | - | chr1_2:63193203-63193222 | Msa0084000:CDS | 35.0% | |
| GCACAAAGCTGTAATAAATG+TGG | - | chr1_2:63193360-63193379 | Msa0084000:CDS | 35.0% | |
| ! | GCTTTGTGATCTTCTTGTTT+AGG | - | chr1_2:63193545-63193564 | Msa0084000:intron | 35.0% |
| TGCATTTCTTTCCACTTCTT+TGG | + | chr1_2:63193594-63193613 | None:intergenic | 35.0% | |
| AAGAAGTGGAAAGAAATGCA+AGG | - | chr1_2:63193594-63193613 | Msa0084000:intron | 35.0% | |
| CAAGTATTACAAGAAGACCA+AGG | - | chr1_2:63193636-63193655 | Msa0084000:intron | 35.0% | |
| TATTACAAGAAGACCAAGGA+AGG | - | chr1_2:63193640-63193659 | Msa0084000:intron | 35.0% | |
| !! | TAGCAACAAAGGAAGCATTT+GGG | + | chr1_2:63193774-63193793 | None:intergenic | 35.0% |
| TTGAGTTTGAGTAGCAACAA+AGG | + | chr1_2:63193785-63193804 | None:intergenic | 35.0% | |
| TTATTGAGACTCAAGATGCT+TGG | - | chr1_2:63194061-63194080 | Msa0084000:intron | 35.0% | |
| AGAACAAGAGATAGCATCAA+AGG | - | chr1_2:63194116-63194135 | Msa0084000:intron | 35.0% | |
| TAGCATCAAAGGAAGAAGAA+AGG | - | chr1_2:63194127-63194146 | Msa0084000:intron | 35.0% | |
| TTTGGGCTAAAGAAAAAGCA+TGG | - | chr1_2:63194193-63194212 | Msa0084000:intron | 35.0% | |
| ! | TTGGGCTAAAGAAAAAGCAT+GGG | - | chr1_2:63194194-63194213 | Msa0084000:intron | 35.0% |
| ! | TCTTGGCTCTTACTCTTATT+TGG | + | chr1_2:63194285-63194304 | None:intergenic | 35.0% |
| !! | TGAATACCCTTTTGAAAGTG+TGG | - | chr1_2:63194326-63194345 | Msa0084000:intron | 35.0% |
| !! | GATATTTGGATGATGGAGTT+TGG | - | chr1_2:63194433-63194452 | Msa0084000:intron | 35.0% |
| ! | TTTGGGATGAAATAGGTGAA+AGG | - | chr1_2:63194451-63194470 | Msa0084000:intron | 35.0% |
| AGGTGAAAGGATGGTTTATA+TGG | - | chr1_2:63194464-63194483 | Msa0084000:intron | 35.0% | |
| GGTGAAAGGATGGTTTATAT+GGG | - | chr1_2:63194465-63194484 | Msa0084000:intron | 35.0% | |
| AGCTGAGTGCAAGAAAATAT+GGG | - | chr1_2:63194503-63194522 | Msa0084000:CDS | 35.0% | |
| !!! | GCACATGAATCAGAGTTTTT+TGG | - | chr1_2:63194648-63194667 | Msa0084000:CDS | 35.0% |
| !! | TTTGGTTCTGAGCATGAAAA+AGG | - | chr1_2:63194666-63194685 | Msa0084000:CDS | 35.0% |
| !! | TTGGTTCTGAGCATGAAAAA+GGG | - | chr1_2:63194667-63194686 | Msa0084000:CDS | 35.0% |
| GAGAAGATGAGTGACCTATA+TGG | - | chr1_2:63192106-63192125 | Msa0084000:three_prime_UTR | 40.0% | |
| !! | TTGATGATGTTATCAACCGC+CGG | + | chr1_2:63192147-63192166 | None:intergenic | 40.0% |
| GGGTCATAGGAATAATTTGG+TGG | + | chr1_2:63192235-63192254 | None:intergenic | 40.0% | |
| TCCTATGACCCTATGATAGT+TGG | - | chr1_2:63192244-63192263 | Msa0084000:three_prime_UTR | 40.0% | |
| ACCAACTATCATAGGGTCAT+AGG | + | chr1_2:63192248-63192267 | None:intergenic | 40.0% | |
| ATTTGTAGGGTTAACAGTGG+AGG | + | chr1_2:63192317-63192336 | None:intergenic | 40.0% | |
| GGTATTTGTAGGGTTAACAG+TGG | + | chr1_2:63192320-63192339 | None:intergenic | 40.0% | |
| GCAGCTATAGTGGTATTTGT+AGG | + | chr1_2:63192331-63192350 | None:intergenic | 40.0% | |
| ACTTCTGATAAAGGATGGCT+TGG | - | chr1_2:63192421-63192440 | Msa0084000:CDS | 40.0% | |
| AGAGAAAGAGTCTCTTGTCT+AGG | + | chr1_2:63192475-63192494 | None:intergenic | 40.0% | |
| !! | ATAATCAGAAAGCACCCTTG+TGG | - | chr1_2:63192536-63192555 | Msa0084000:CDS | 40.0% |
| GTGACTATACTTACTTGCAC+TGG | - | chr1_2:63192788-63192807 | Msa0084000:CDS | 40.0% | |
| GCTGAGCGAATTAGGTTAAT+AGG | + | chr1_2:63192905-63192924 | None:intergenic | 40.0% | |
| CCCACAAATCTTTGCATTGT+AGG | - | chr1_2:63193192-63193211 | Msa0084000:CDS | 40.0% | |
| ! | CTTGTTTAGGATAATGGCTG+AGG | - | chr1_2:63193558-63193577 | Msa0084000:intron | 40.0% |
| ! | AGGATAATGGCTGAGGAATT+TGG | - | chr1_2:63193565-63193584 | Msa0084000:intron | 40.0% |
| ! | GGATAATGGCTGAGGAATTT+GGG | - | chr1_2:63193566-63193585 | Msa0084000:intron | 40.0% |
| GAATTTGGGTACCAAAGAAG+TGG | - | chr1_2:63193580-63193599 | Msa0084000:intron | 40.0% | |
| !! | TCTACTAGCTTTACCTTCCT+TGG | + | chr1_2:63193656-63193675 | None:intergenic | 40.0% |
| GGTAAAGCTAGTAGACAAGA+TGG | - | chr1_2:63193661-63193680 | Msa0084000:intron | 40.0% | |
| AGACAGCTTGAAGCAATATG+TGG | - | chr1_2:63193703-63193722 | Msa0084000:intron | 40.0% | |
| !! | AGCAACAAAGGAAGCATTTG+GGG | + | chr1_2:63193773-63193792 | None:intergenic | 40.0% |
| !! | GTAGCAACAAAGGAAGCATT+TGG | + | chr1_2:63193775-63193794 | None:intergenic | 40.0% |
| !! | CTCATCGTTGTTTTCAGATG+AGG | + | chr1_2:63193917-63193936 | None:intergenic | 40.0% |
| CTCATCTGAAAACAACGATG+AGG | - | chr1_2:63193915-63193934 | Msa0084000:intron | 40.0% | |
| AAGTTGGAGAGGTAAAGTTG+AGG | - | chr1_2:63194011-63194030 | Msa0084000:intron | 40.0% | |
| GGAAGAGAAAAGAGTCAATG+AGG | - | chr1_2:63194148-63194167 | Msa0084000:intron | 40.0% | |
| ! | GATGGAGTTTGGGATGAAAT+AGG | - | chr1_2:63194444-63194463 | Msa0084000:intron | 40.0% |
| GGATGAAATAGGTGAAAGGA+TGG | - | chr1_2:63194455-63194474 | Msa0084000:intron | 40.0% | |
| GAGCTGAGTGCAAGAAAATA+TGG | - | chr1_2:63194502-63194521 | Msa0084000:CDS | 40.0% | |
| TATGTCTCTTAGAAGGACAG+TGG | - | chr1_2:63194536-63194555 | Msa0084000:CDS | 40.0% | |
| ACTGTGGAGTCAAAAACACA+AGG | - | chr1_2:63194559-63194578 | Msa0084000:CDS | 40.0% | |
| ! | GAACCACCACCTTGTTTGTA+TGG | - | chr1_2:63192190-63192209 | Msa0084000:three_prime_UTR | 45.0% |
| ACACCACCATACAAACAAGG+TGG | + | chr1_2:63192199-63192218 | None:intergenic | 45.0% | |
| GCAACACCACCATACAAACA+AGG | + | chr1_2:63192202-63192221 | None:intergenic | 45.0% | |
| CAGTGGAGGAATAGTCATAG+TGG | + | chr1_2:63192303-63192322 | None:intergenic | 45.0% | |
| GCTTCTACTGCATTCTGTGT+AGG | - | chr1_2:63192391-63192410 | Msa0084000:three_prime_UTR | 45.0% | |
| AAACTCCAATAGCCCTAGCT+AGG | + | chr1_2:63192930-63192949 | None:intergenic | 45.0% | |
| GAGGCATGAGAGTTTGTGTT+TGG | + | chr1_2:63193733-63193752 | None:intergenic | 45.0% | |
| ACACACTATGAAGTCGTCGA+AGG | - | chr1_2:63193954-63193973 | Msa0084000:intron | 45.0% | |
| ATGAAGTCGTCGAAGGAGAA+AGG | - | chr1_2:63193961-63193980 | Msa0084000:intron | 45.0% | |
| TGAAGTCGTCGAAGGAGAAA+GGG | - | chr1_2:63193962-63193981 | Msa0084000:intron | 45.0% | |
| AGAAAGGGCAAAGTGGTCAT+AGG | - | chr1_2:63193977-63193996 | Msa0084000:intron | 45.0% | |
| ATAGGAGGGCAAGGAAAAGT+TGG | - | chr1_2:63193995-63194014 | Msa0084000:intron | 45.0% | |
| TGAGACTCAAGATGCTTGGA+TGG | - | chr1_2:63194065-63194084 | Msa0084000:intron | 45.0% | |
| GAGTCAAAAACACAAGGCCT+TGG | - | chr1_2:63194565-63194584 | Msa0084000:CDS | 45.0% | |
| !! | AAACACAAGGCCTTGGTGTT+TGG | - | chr1_2:63194572-63194591 | Msa0084000:CDS | 45.0% |
| !! | AACACAAGGCCTTGGTGTTT+GGG | - | chr1_2:63194573-63194592 | Msa0084000:CDS | 45.0% |
| AGCTTAAGTCCCAAACACCA+AGG | + | chr1_2:63194585-63194604 | None:intergenic | 45.0% | |
| !! | GGGTCATTGACTTGCAAGTT+TGG | - | chr1_2:63194687-63194706 | Msa0084000:CDS | 45.0% |
| AGGTGTGTAAGACTCTAGCT+AGG | - | chr1_2:63194726-63194745 | Msa0084000:CDS | 45.0% | |
| ! | GAGTGACCTATATGGGCTAC+CGG | - | chr1_2:63192114-63192133 | Msa0084000:three_prime_UTR | 50.0% |
| ! | AAACAAGGTGGTGGTTCTGC+TGG | + | chr1_2:63192187-63192206 | None:intergenic | 50.0% |
| CCACCATACAAACAAGGTGG+TGG | + | chr1_2:63192196-63192215 | None:intergenic | 50.0% | |
| ! | CCACCACCTTGTTTGTATGG+TGG | - | chr1_2:63192193-63192212 | Msa0084000:three_prime_UTR | 50.0% |
| GGTGAGTGAAGCTACTACGA+GGG | + | chr1_2:63192282-63192301 | None:intergenic | 50.0% | |
| TGGTGAGTGAAGCTACTACG+AGG | + | chr1_2:63192283-63192302 | None:intergenic | 50.0% | |
| GCTAGGTAGCTGAGCGAATT+AGG | + | chr1_2:63192913-63192932 | None:intergenic | 50.0% | |
| ATTCGCTCAGCTACCTAGCT+AGG | - | chr1_2:63192914-63192933 | Msa0084000:CDS | 50.0% | |
| TTCGCTCAGCTACCTAGCTA+GGG | - | chr1_2:63192915-63192934 | Msa0084000:CDS | 50.0% | |
| AGCTACCTAGCTAGGGCTAT+TGG | - | chr1_2:63192922-63192941 | Msa0084000:CDS | 50.0% | |
| TCGAAGGAGAAAGGGCAAAG+TGG | - | chr1_2:63193970-63193989 | Msa0084000:intron | 50.0% | |
| AAGGGCAAAGTGGTCATAGG+AGG | - | chr1_2:63193980-63193999 | Msa0084000:intron | 50.0% | |
| AGGGCAAAGTGGTCATAGGA+GGG | - | chr1_2:63193981-63194000 | Msa0084000:intron | 50.0% | |
| AAAGTGGTCATAGGAGGGCA+AGG | - | chr1_2:63193986-63194005 | Msa0084000:intron | 50.0% | |
| AGGGCAAGGAAAAGTTGGAG+AGG | - | chr1_2:63194000-63194019 | Msa0084000:intron | 50.0% | |
| !! | CTTAGAAGGACAGTGGACTG+TGG | - | chr1_2:63194543-63194562 | Msa0084000:CDS | 50.0% |
| ! | TGACCTATATGGGCTACCGG+AGG | - | chr1_2:63192117-63192136 | Msa0084000:three_prime_UTR | 55.0% |
| GATCCTCCGGTAGCCCATAT+AGG | + | chr1_2:63192123-63192142 | None:intergenic | 55.0% | |
| AGCAGCAGCAGCAGCTATAG+TGG | + | chr1_2:63192341-63192360 | None:intergenic | 55.0% | |
| ! | ATGGGCTACCGGAGGATCTC+CGG | - | chr1_2:63192125-63192144 | Msa0084000:three_prime_UTR | 60.0% |
| ATCAACCGCCGGAGATCCTC+CGG | + | chr1_2:63192136-63192155 | None:intergenic | 60.0% | |
| GGCTACCGGAGGATCTCCGG+CGG | - | chr1_2:63192128-63192147 | Msa0084000:three_prime_UTR | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 63192063 | 63194981 | 63192063 | ID=Msa0084000;Name=Msa0084000 |
| chr1_2 | mRNA | 63192063 | 63194981 | 63192063 | ID=Msa0084000-mRNA-1;Parent=Msa0084000;Name=Msa0084000-mRNA-1;_AED=0.00;_eAED=0.00;_QI=49|1|1|1|1|1|2|355|506 |
| chr1_2 | exon | 63192063 | 63193477 | 63192063 | ID=Msa0084000-mRNA-1:exon:21178;Parent=Msa0084000-mRNA-1 |
| chr1_2 | exon | 63194472 | 63194981 | 63194472 | ID=Msa0084000-mRNA-1:exon:21177;Parent=Msa0084000-mRNA-1 |
| chr1_2 | five_prime_UTR | 63194933 | 63194981 | 63194933 | ID=Msa0084000-mRNA-1:five_prime_utr;Parent=Msa0084000-mRNA-1 |
| chr1_2 | CDS | 63194472 | 63194932 | 63194472 | ID=Msa0084000-mRNA-1:cds;Parent=Msa0084000-mRNA-1 |
| chr1_2 | CDS | 63192418 | 63193477 | 63192418 | ID=Msa0084000-mRNA-1:cds;Parent=Msa0084000-mRNA-1 |
| chr1_2 | three_prime_UTR | 63192063 | 63192417 | 63192063 | ID=Msa0084000-mRNA-1:three_prime_utr;Parent=Msa0084000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
