Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1001890 | KEH27117.1 | 59.322 | 59 | 24 | 0 | 2 | 60 | 17 | 75 | 3.48e-17 | 80.1 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1001890 | A0A072UBW5 | 59.322 | 59 | 24 | 0 | 2 | 60 | 17 | 75 | 1.66e-17 | 80.1 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0006980 | Msa1001890 | 0.834150 | 3.539038e-56 | -8.615850e-47 |
Msa0015710 | Msa1001890 | 0.809822 | 1.564787e-50 | -8.615850e-47 |
Msa0016120 | Msa1001890 | 0.814026 | 1.899722e-51 | -8.615850e-47 |
Msa0019600 | Msa1001890 | 0.840627 | 7.759918e-58 | -8.615850e-47 |
Msa0050040 | Msa1001890 | 0.806326 | 8.684225e-50 | -8.615850e-47 |
Msa0055450 | Msa1001890 | 0.815330 | 9.770801e-52 | -8.615850e-47 |
Msa0080990 | Msa1001890 | 0.832844 | 7.495563e-56 | -8.615850e-47 |
Msa0084000 | Msa1001890 | 0.810322 | 1.221037e-50 | -8.615850e-47 |
Msa0102990 | Msa1001890 | 0.806900 | 6.570294e-50 | -8.615850e-47 |
Msa0109880 | Msa1001890 | 0.819409 | 1.178966e-52 | -8.615850e-47 |
Msa0641250 | Msa1001890 | 0.813763 | 2.171014e-51 | -8.615850e-47 |
Msa0641360 | Msa1001890 | 0.800151 | 1.648751e-48 | -8.615850e-47 |
Msa0663680 | Msa1001890 | 0.808804 | 2.586384e-50 | -8.615850e-47 |
Msa0669840 | Msa1001890 | 0.861571 | 9.343987e-64 | -8.615850e-47 |
Msa0725860 | Msa1001890 | 0.819685 | 1.020011e-52 | -8.615850e-47 |
Msa0739580 | Msa1001890 | 0.853995 | 1.652224e-61 | -8.615850e-47 |
Msa0748000 | Msa1001890 | 0.831520 | 1.593606e-55 | -8.615850e-47 |
Msa0782360 | Msa1001890 | 0.821050 | 4.961853e-53 | -8.615850e-47 |
Msa0786040 | Msa1001890 | 0.800739 | 1.251476e-48 | -8.615850e-47 |
Msa0823400 | Msa1001890 | 0.845143 | 4.880384e-59 | -8.615850e-47 |
Msa0828830 | Msa1001890 | 0.834102 | 3.639680e-56 | -8.615850e-47 |
Msa0840500 | Msa1001890 | 0.817163 | 3.801771e-52 | -8.615850e-47 |
Msa0124130 | Msa1001890 | 0.866430 | 2.867485e-65 | -8.615850e-47 |
Msa0141120 | Msa1001890 | 0.827032 | 1.956901e-54 | -8.615850e-47 |
Msa0149140 | Msa1001890 | 0.851331 | 9.512228e-61 | -8.615850e-47 |
Msa0152480 | Msa1001890 | 0.800805 | 1.212904e-48 | -8.615850e-47 |
Msa0152500 | Msa1001890 | 0.811909 | 5.530279e-51 | -8.615850e-47 |
Msa0156250 | Msa1001890 | 0.857869 | 1.216292e-62 | -8.615850e-47 |
Msa0185490 | Msa1001890 | 0.838991 | 2.069170e-57 | -8.615850e-47 |
Msa0197930 | Msa1001890 | 0.803304 | 3.716011e-49 | -8.615850e-47 |
Msa0212150 | Msa1001890 | 0.834300 | 3.245388e-56 | -8.615850e-47 |
Msa0219190 | Msa1001890 | 0.816917 | 4.319407e-52 | -8.615850e-47 |
Msa0375680 | Msa1001890 | 0.800107 | 1.682698e-48 | -8.615850e-47 |
Msa0382010 | Msa1001890 | 0.800586 | 1.344502e-48 | -8.615850e-47 |
Msa0392420 | Msa1001890 | 0.827318 | 1.671949e-54 | -8.615850e-47 |
Msa0392460 | Msa1001890 | 0.829852 | 4.082753e-55 | -8.615850e-47 |
Msa0392490 | Msa1001890 | 0.819313 | 1.239949e-52 | -8.615850e-47 |
Msa0406000 | Msa1001890 | 0.876724 | 1.112354e-68 | -8.615850e-47 |
Msa0423100 | Msa1001890 | 0.806630 | 7.492909e-50 | -8.615850e-47 |
Msa0424330 | Msa1001890 | 0.820810 | 5.633981e-53 | -8.615850e-47 |
Msa0424340 | Msa1001890 | 0.829198 | 5.885148e-55 | -8.615850e-47 |
Msa0424350 | Msa1001890 | 0.828634 | 8.059487e-55 | -8.615850e-47 |
Msa0451400 | Msa1001890 | 0.873459 | 1.446116e-67 | -8.615850e-47 |
Msa0996270 | Msa1001890 | 0.826490 | 2.635958e-54 | -8.615850e-47 |
Msa0999300 | Msa1001890 | 0.948563 | 7.357542e-107 | -8.615850e-47 |
Msa0999350 | Msa1001890 | 0.803719 | 3.047739e-49 | -8.615850e-47 |
Msa0999360 | Msa1001890 | 0.818908 | 1.533251e-52 | -8.615850e-47 |
Msa0999410 | Msa1001890 | 0.809804 | 1.578593e-50 | -8.615850e-47 |
Msa1001890 | Msa1007870 | 0.802709 | 4.933039e-49 | -8.615850e-47 |
Msa1001890 | Msa1034680 | 0.800728 | 1.257660e-48 | -8.615850e-47 |
Msa1001890 | Msa1037770 | 0.813098 | 3.039049e-51 | -8.615850e-47 |
Msa1001890 | Msa1037890 | 0.831034 | 2.098326e-55 | -8.615850e-47 |
Msa1001890 | Msa1037900 | 0.835057 | 2.093806e-56 | -8.615850e-47 |
Msa1001890 | Msa1037910 | 0.816027 | 6.833225e-52 | -8.615850e-47 |
Msa1001890 | Msa1041530 | 0.809421 | 1.907730e-50 | -8.615850e-47 |
Msa1001890 | Msa1042670 | 0.814477 | 1.510232e-51 | -8.615850e-47 |
Msa1001890 | Msa1081570 | 0.820996 | 5.103954e-53 | -8.615850e-47 |
Msa1001890 | Msa1084520 | 0.819795 | 9.628296e-53 | -8.615850e-47 |
Msa1001890 | Msa1096210 | 0.800911 | 1.153992e-48 | -8.615850e-47 |
Msa1001890 | Msa1127140 | 0.819447 | 1.155753e-52 | -8.615850e-47 |
Msa1001890 | Msa1129950 | 0.808230 | 3.430472e-50 | -8.615850e-47 |
Msa1001890 | Msa1129960 | 0.837446 | 5.173426e-57 | -8.615850e-47 |
Msa1001890 | Msa1129970 | 0.815544 | 8.753690e-52 | -8.615850e-47 |
Msa1001890 | Msa1130010 | 0.807583 | 4.708222e-50 | -8.615850e-47 |
Msa1001890 | Msa1145020 | 0.839268 | 1.754151e-57 | -8.615850e-47 |
Msa1001890 | Msa1166400 | 0.815517 | 8.876152e-52 | -8.615850e-47 |
Msa1001890 | Msa1169990 | 0.801921 | 7.166644e-49 | -8.615850e-47 |
Msa1001890 | Msa1176160 | 0.810205 | 1.294014e-50 | -8.615850e-47 |
Msa1001890 | Msa1201110 | 0.805841 | 1.098488e-49 | -8.615850e-47 |
Msa1001890 | Msa1201160 | 0.829676 | 4.504700e-55 | -8.615850e-47 |
Msa1001890 | Msa1228190 | 0.878566 | 2.531893e-69 | -8.615850e-47 |
Msa1001890 | Msa1233560 | 0.806401 | 8.373961e-50 | -8.615850e-47 |
Msa1001890 | Msa1271260 | 0.856063 | 4.142662e-62 | -8.615850e-47 |
Msa1001890 | Msa1294290 | 0.824886 | 6.328810e-54 | -8.615850e-47 |
Msa1001890 | Msa1305510 | 0.828579 | 8.309932e-55 | -8.615850e-47 |
Msa1001890 | Msa1307150 | 0.801407 | 9.137729e-49 | -8.615850e-47 |
Msa1001890 | Msa1307190 | 0.822116 | 2.814114e-53 | -8.615850e-47 |
Msa1001890 | Msa1336780 | 0.830367 | 3.057174e-55 | -8.615850e-47 |
Msa1001890 | Msa1339580 | 0.817041 | 4.050020e-52 | -8.615850e-47 |
Msa1001890 | Msa1356990 | 0.829171 | 5.976496e-55 | -8.615850e-47 |
Msa1001890 | Msa1374550 | 0.815452 | 9.178607e-52 | -8.615850e-47 |
Msa1001890 | Msa1379970 | 0.839361 | 1.659590e-57 | -8.615850e-47 |
Msa1001890 | Msa1394890 | 0.850975 | 1.198975e-60 | -8.615850e-47 |
Msa1001890 | Msa1406780 | 0.849713 | 2.710382e-60 | -8.615850e-47 |
Msa1001890 | Msa1420060 | 0.836911 | 7.089725e-57 | -8.615850e-47 |
Msa1001890 | Msa1421550 | 0.873050 | 1.984790e-67 | -8.615850e-47 |
Msa1001890 | Msa1423460 | 0.841679 | 4.104960e-58 | -8.615850e-47 |
Msa1001890 | Msa1431850 | 0.846405 | 2.216812e-59 | -8.615850e-47 |
Msa1001890 | Msa1435480 | 0.811737 | 6.029126e-51 | -8.615850e-47 |
Msa1001890 | Msa1449940 | 0.818189 | 2.231754e-52 | -8.615850e-47 |
Msa1001890 | Msa1455320 | 0.819305 | 1.245205e-52 | -8.615850e-47 |
Msa1001890 | Msa1459530 | 0.840316 | 9.360379e-58 | -8.615850e-47 |
Msa1001890 | Msa1461060 | 0.836891 | 7.171064e-57 | -8.615850e-47 |
Msa0252770 | Msa1001890 | 0.848665 | 5.304809e-60 | -8.615850e-47 |
Msa0289920 | Msa1001890 | 0.816792 | 4.607686e-52 | -8.615850e-47 |
Msa0298240 | Msa1001890 | 0.832373 | 9.812183e-56 | -8.615850e-47 |
Msa0306120 | Msa1001890 | 0.844242 | 8.532327e-59 | -8.615850e-47 |
Msa0322860 | Msa1001890 | 0.814585 | 1.429197e-51 | -8.615850e-47 |
Msa0329620 | Msa1001890 | 0.861429 | 1.032312e-63 | -8.615850e-47 |
Msa0344570 | Msa1001890 | 0.806627 | 7.503239e-50 | -8.615850e-47 |
Msa0351770 | Msa1001890 | 0.819472 | 1.141035e-52 | -8.615850e-47 |
Msa0359250 | Msa1001890 | 0.885443 | 8.097564e-72 | -8.615850e-47 |
Msa0487570 | Msa1001890 | 0.830091 | 3.570582e-55 | -8.615850e-47 |
Msa0487630 | Msa1001890 | 0.824007 | 1.019010e-53 | -8.615850e-47 |
Msa0492190 | Msa1001890 | 0.859083 | 5.286560e-63 | -8.615850e-47 |
Msa0515950 | Msa1001890 | 0.811952 | 5.411072e-51 | -8.615850e-47 |
Msa0534930 | Msa1001890 | 0.828635 | 8.057321e-55 | -8.615850e-47 |
Msa0535040 | Msa1001890 | 0.829261 | 5.683531e-55 | -8.615850e-47 |
Msa0537920 | Msa1001890 | 0.803507 | 3.373485e-49 | -8.615850e-47 |
Msa0575740 | Msa1001890 | 0.820228 | 7.662123e-53 | -8.615850e-47 |
Msa0591790 | Msa1001890 | 0.845404 | 4.147579e-59 | -8.615850e-47 |
Msa0594090 | Msa1001890 | 0.832391 | 9.711805e-56 | -8.615850e-47 |
Msa0860280 | Msa1001890 | 0.841634 | 4.219069e-58 | -8.615850e-47 |
Msa0867350 | Msa1001890 | 0.821781 | 3.363351e-53 | -8.615850e-47 |
Msa0885060 | Msa1001890 | 0.833901 | 4.085506e-56 | -8.615850e-47 |
Msa0896350 | Msa1001890 | 0.803826 | 2.896124e-49 | -8.615850e-47 |
Msa0898730 | Msa1001890 | 0.829200 | 5.881479e-55 | -8.615850e-47 |
Msa0922750 | Msa1001890 | 0.814588 | 1.427403e-51 | -8.615850e-47 |
Msa0929870 | Msa1001890 | 0.848277 | 6.792619e-60 | -8.615850e-47 |
Msa0936410 | Msa1001890 | 0.813562 | 2.404417e-51 | -8.615850e-47 |
Msa0944760 | Msa1001890 | 0.847370 | 1.207021e-59 | -8.615850e-47 |
Msa0944880 | Msa1001890 | 0.819173 | 1.334920e-52 | -8.615850e-47 |
Msa0961560 | Msa1001890 | 0.827218 | 1.766645e-54 | -8.615850e-47 |
Msa0965310 | Msa1001890 | 0.813001 | 3.192308e-51 | -8.615850e-47 |
Msa0973250 | Msa1001890 | 0.811274 | 7.600710e-51 | -8.615850e-47 |
Msa0979510 | Msa1001890 | 0.806995 | 6.274980e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1001890 | MtrunA17_Chr6g0485481 | 59.322 | 59 | 24 | 0 | 2 | 60 | 17 | 75 | 3.20e-21 | 80.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 27 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAGATGAAAACATTGATTAT+TGG | 0.176776 | 6_4:-86028712 | Msa1001890:CDS |
CATGGGTGGAATTGGAAAAT+AGG | 0.301614 | 6_4:-86029952 | Msa1001890:intron |
TCAATTGAGATGGTTATGTT+AGG | 0.316257 | 6_4:+86030313 | None:intergenic |
GCCTTTGGCATGGGTGGAAT+TGG | 0.327672 | 6_4:-86029960 | Msa1001890:five_prime_UTR |
GAGTTTCATTGGTTGCAATA+AGG | 0.353808 | 6_4:+86028539 | None:intergenic |
CAATTGAGATGGTTATGTTA+GGG | 0.394866 | 6_4:+86030314 | None:intergenic |
CTGAAGTGTGGAGCTGCCTT+TGG | 0.398857 | 6_4:-86029975 | Msa1001890:five_prime_UTR |
ACCTACACTCAACACATATT+CGG | 0.429644 | 6_4:-86028777 | Msa1001890:five_prime_UTR |
AGAAAAGGAGTGTTTGTTGT+TGG | 0.434642 | 6_4:+86030343 | None:intergenic |
AGTATCACCTGACTTTGATA+TGG | 0.441071 | 6_4:+86028613 | None:intergenic |
GTGTGGAGCTGCCTTTGGCA+TGG | 0.496523 | 6_4:-86029970 | Msa1001890:five_prime_UTR |
GGAAGAACAACACTCAAAGC+TGG | 0.500377 | 6_4:+86030364 | None:intergenic |
TGTGGAGCTGCCTTTGGCAT+GGG | 0.502829 | 6_4:-86029969 | Msa1001890:five_prime_UTR |
TTAATTACCATATCAAAGTC+AGG | 0.511911 | 6_4:-86028620 | Msa1001890:CDS |
ATGTTAGGGGTGAAAAGAAA+AGG | 0.530276 | 6_4:+86030328 | None:intergenic |
GGAGCTGCCTTTGGCATGGG+TGG | 0.538586 | 6_4:-86029966 | Msa1001890:five_prime_UTR |
AATTGAGATGGTTATGTTAG+GGG | 0.567185 | 6_4:+86030315 | None:intergenic |
CAGCGTGAGGTTCATGCACA+TGG | 0.567686 | 6_4:+86029995 | None:intergenic |
TCCAATTCCACCCATGCCAA+AGG | 0.578726 | 6_4:+86029959 | None:intergenic |
GAAGAACAACACTCAAAGCT+GGG | 0.590836 | 6_4:+86030365 | None:intergenic |
CCAGCATCAATAAGAAAACC+AGG | 0.591332 | 6_4:+86028668 | None:intergenic |
TGGCAAGACAGAAACGATGA+AGG | 0.611685 | 6_4:-86028692 | Msa1001890:CDS |
GACAGAAACGATGAAGGACC+TGG | 0.614083 | 6_4:-86028686 | Msa1001890:CDS |
TCCGAATATGTGTTGAGTGT+AGG | 0.619739 | 6_4:+86028776 | None:intergenic |
CAGCTCCACACTTCAGCGTG+AGG | 0.630034 | 6_4:+86029982 | None:intergenic |
ACACTCAACACATATTCGGA+TGG | 0.639597 | 6_4:-86028773 | Msa1001890:five_prime_UTR |
ATGAACCTCACGCTGAAGTG+TGG | 0.657677 | 6_4:-86029987 | Msa1001890:five_prime_UTR |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TAAATAGTTAATAATTTGTA+AGG | + | chr6_4:86029848-86029867 | None:intergenic | 10.0% |
!! | TTACAAATAAAATAGAAAAA+TGG | + | chr6_4:86030024-86030043 | None:intergenic | 10.0% |
!!! | TAAATAGTTAATAATTTGTA+AGG | + | chr6_4:86029848-86029867 | None:intergenic | 10.0% |
!! | TTACAAATAAAATAGAAAAA+TGG | + | chr6_4:86030024-86030043 | None:intergenic | 10.0% |
!!! | TGTATTTTATCAAGAAATTA+AGG | - | chr6_4:86028676-86028695 | Msa1001890:CDS | 15.0% |
!! | AAAATACATCTAAGAATATA+TGG | + | chr6_4:86028718-86028737 | None:intergenic | 15.0% |
!! | ATGATATGCAATAAAATAAA+TGG | + | chr6_4:86029940-86029959 | None:intergenic | 15.0% |
!! | ACATGAAAATTATCAAAAAA+GGG | - | chr6_4:86030341-86030360 | Msa1001890:five_prime_UTR | 15.0% |
!!! | TGTATTTTATCAAGAAATTA+AGG | - | chr6_4:86028676-86028695 | Msa1001890:CDS | 15.0% |
!! | AAAATACATCTAAGAATATA+TGG | + | chr6_4:86028718-86028737 | None:intergenic | 15.0% |
!! | ATGATATGCAATAAAATAAA+TGG | + | chr6_4:86029940-86029959 | None:intergenic | 15.0% |
!! | ACATGAAAATTATCAAAAAA+GGG | - | chr6_4:86030341-86030360 | Msa1001890:five_prime_UTR | 15.0% |
!!! | GTTTTTAATCACTATGTATT+TGG | + | chr6_4:86028642-86028661 | None:intergenic | 20.0% |
!!! | AAAATACATGCTTTTTTTCT+TGG | + | chr6_4:86028664-86028683 | None:intergenic | 20.0% |
!!! | TTATTATTTTGTAGTCCTTT+TGG | - | chr6_4:86028780-86028799 | Msa1001890:five_prime_UTR | 20.0% |
!!! | ATGCTTTTAATTTTAAACGT+GGG | + | chr6_4:86028823-86028842 | None:intergenic | 20.0% |
!!! | TATGCTTTTAATTTTAAACG+TGG | + | chr6_4:86028824-86028843 | None:intergenic | 20.0% |
!! | ATATTTGTTTATGTTGTGTT+TGG | - | chr6_4:86029420-86029439 | Msa1001890:intron | 20.0% |
!!! | TAAGTTTTCGAAATTATAAG+TGG | - | chr6_4:86029443-86029462 | Msa1001890:intron | 20.0% |
!! | CTAAAAATGATAATATCATG+AGG | + | chr6_4:86029581-86029600 | None:intergenic | 20.0% |
!! | CCTCAAATATGAATTATATT+AGG | + | chr6_4:86029723-86029742 | None:intergenic | 20.0% |
!! | CCTAATATAATTCATATTTG+AGG | - | chr6_4:86029720-86029739 | Msa1001890:intron | 20.0% |
!! | ATATGCAATAAAATAAATGG+CGG | + | chr6_4:86029937-86029956 | None:intergenic | 20.0% |
!!! | AAGATGAAAACATTGATTAT+TGG | - | chr6_4:86030199-86030218 | Msa1001890:intron | 20.0% |
!! | GACATGAAAATTATCAAAAA+AGG | - | chr6_4:86030340-86030359 | Msa1001890:five_prime_UTR | 20.0% |
!!! | GTTTTTAATCACTATGTATT+TGG | + | chr6_4:86028642-86028661 | None:intergenic | 20.0% |
!!! | AAAATACATGCTTTTTTTCT+TGG | + | chr6_4:86028664-86028683 | None:intergenic | 20.0% |
!!! | TTATTATTTTGTAGTCCTTT+TGG | - | chr6_4:86028780-86028799 | Msa1001890:five_prime_UTR | 20.0% |
!!! | ATGCTTTTAATTTTAAACGT+GGG | + | chr6_4:86028823-86028842 | None:intergenic | 20.0% |
!!! | TATGCTTTTAATTTTAAACG+TGG | + | chr6_4:86028824-86028843 | None:intergenic | 20.0% |
!! | ATATTTGTTTATGTTGTGTT+TGG | - | chr6_4:86029420-86029439 | Msa1001890:intron | 20.0% |
!!! | TAAGTTTTCGAAATTATAAG+TGG | - | chr6_4:86029443-86029462 | Msa1001890:intron | 20.0% |
!! | CTAAAAATGATAATATCATG+AGG | + | chr6_4:86029581-86029600 | None:intergenic | 20.0% |
!! | CCTCAAATATGAATTATATT+AGG | + | chr6_4:86029723-86029742 | None:intergenic | 20.0% |
!! | CCTAATATAATTCATATTTG+AGG | - | chr6_4:86029720-86029739 | Msa1001890:intron | 20.0% |
!! | ATATGCAATAAAATAAATGG+CGG | + | chr6_4:86029937-86029956 | None:intergenic | 20.0% |
!!! | AAGATGAAAACATTGATTAT+TGG | - | chr6_4:86030199-86030218 | Msa1001890:intron | 20.0% |
!! | GACATGAAAATTATCAAAAA+AGG | - | chr6_4:86030340-86030359 | Msa1001890:five_prime_UTR | 20.0% |
!! | TTTTAAACGTGGGAAAAAAA+TGG | + | chr6_4:86028813-86028832 | None:intergenic | 25.0% |
! | ATTAACTAATAAAAAAGGGC+TGG | + | chr6_4:86029081-86029100 | None:intergenic | 25.0% |
!!! | TTTTTAAGTAAAAAAAGGGC+TGG | + | chr6_4:86029131-86029150 | None:intergenic | 25.0% |
! | ATGATAGAAACATAACACAA+TGG | + | chr6_4:86029345-86029364 | None:intergenic | 25.0% |
!!! | GCGGTTTGTTAAAATAATTA+AGG | + | chr6_4:86029370-86029389 | None:intergenic | 25.0% |
! | CCAATAAAAAATGTTACTAC+CGG | - | chr6_4:86029484-86029503 | Msa1001890:intron | 25.0% |
! | CAATAAAAAATGTTACTACC+GGG | - | chr6_4:86029485-86029504 | Msa1001890:intron | 25.0% |
!!! | TTATTGATAGTGAAAATCGT+AGG | - | chr6_4:86029619-86029638 | Msa1001890:intron | 25.0% |
! | TTAATTACCATATCAAAGTC+AGG | - | chr6_4:86030291-86030310 | Msa1001890:five_prime_UTR | 25.0% |
!!! | ACTTTACTTTTTTACTTCAG+TGG | - | chr6_4:86030318-86030337 | Msa1001890:five_prime_UTR | 25.0% |
!! | TTTTAAACGTGGGAAAAAAA+TGG | + | chr6_4:86028813-86028832 | None:intergenic | 25.0% |
! | ATTAACTAATAAAAAAGGGC+TGG | + | chr6_4:86029081-86029100 | None:intergenic | 25.0% |
!!! | TTTTTAAGTAAAAAAAGGGC+TGG | + | chr6_4:86029131-86029150 | None:intergenic | 25.0% |
! | ATGATAGAAACATAACACAA+TGG | + | chr6_4:86029345-86029364 | None:intergenic | 25.0% |
!!! | GCGGTTTGTTAAAATAATTA+AGG | + | chr6_4:86029370-86029389 | None:intergenic | 25.0% |
! | CCAATAAAAAATGTTACTAC+CGG | - | chr6_4:86029484-86029503 | Msa1001890:intron | 25.0% |
! | CAATAAAAAATGTTACTACC+GGG | - | chr6_4:86029485-86029504 | Msa1001890:intron | 25.0% |
!!! | TTATTGATAGTGAAAATCGT+AGG | - | chr6_4:86029619-86029638 | Msa1001890:intron | 25.0% |
! | TTAATTACCATATCAAAGTC+AGG | - | chr6_4:86030291-86030310 | Msa1001890:five_prime_UTR | 25.0% |
!!! | ACTTTACTTTTTTACTTCAG+TGG | - | chr6_4:86030318-86030337 | Msa1001890:five_prime_UTR | 25.0% |
AATTGAGATGGTTATGTTAG+GGG | + | chr6_4:86028599-86028618 | None:intergenic | 30.0% | |
CAATTGAGATGGTTATGTTA+GGG | + | chr6_4:86028600-86028619 | None:intergenic | 30.0% | |
TCAATTGAGATGGTTATGTT+AGG | + | chr6_4:86028601-86028620 | None:intergenic | 30.0% | |
! | GAGAAAGTTTTCAATTGAGA+TGG | + | chr6_4:86028611-86028630 | None:intergenic | 30.0% |
CAACAAGACAAATCATGTTT+AGG | + | chr6_4:86028883-86028902 | None:intergenic | 30.0% | |
! | CTAAACATGATTTGTCTTGT+TGG | - | chr6_4:86028881-86028900 | Msa1001890:intron | 30.0% |
AAACATAAGATGATGAAGAG+AGG | - | chr6_4:86029208-86029227 | Msa1001890:intron | 30.0% | |
!!! | CCGGTAGTAACATTTTTTAT+TGG | + | chr6_4:86029487-86029506 | None:intergenic | 30.0% |
ACTATTAAAGATCTCTCTGT+AGG | + | chr6_4:86030096-86030115 | None:intergenic | 30.0% | |
AATTGAGATGGTTATGTTAG+GGG | + | chr6_4:86028599-86028618 | None:intergenic | 30.0% | |
CAATTGAGATGGTTATGTTA+GGG | + | chr6_4:86028600-86028619 | None:intergenic | 30.0% | |
TCAATTGAGATGGTTATGTT+AGG | + | chr6_4:86028601-86028620 | None:intergenic | 30.0% | |
! | GAGAAAGTTTTCAATTGAGA+TGG | + | chr6_4:86028611-86028630 | None:intergenic | 30.0% |
CAACAAGACAAATCATGTTT+AGG | + | chr6_4:86028883-86028902 | None:intergenic | 30.0% | |
! | CTAAACATGATTTGTCTTGT+TGG | - | chr6_4:86028881-86028900 | Msa1001890:intron | 30.0% |
AAACATAAGATGATGAAGAG+AGG | - | chr6_4:86029208-86029227 | Msa1001890:intron | 30.0% | |
!!! | CCGGTAGTAACATTTTTTAT+TGG | + | chr6_4:86029487-86029506 | None:intergenic | 30.0% |
ACTATTAAAGATCTCTCTGT+AGG | + | chr6_4:86030096-86030115 | None:intergenic | 30.0% | |
!! | AGAAAAGGAGTGTTTGTTGT+TGG | + | chr6_4:86028571-86028590 | None:intergenic | 35.0% |
ATGTTAGGGGTGAAAAGAAA+AGG | + | chr6_4:86028586-86028605 | None:intergenic | 35.0% | |
AAAAATGGAAAGGGACCAAA+AGG | + | chr6_4:86028798-86028817 | None:intergenic | 35.0% | |
ACGTGGGAAAAAAATGGAAA+GGG | + | chr6_4:86028807-86028826 | None:intergenic | 35.0% | |
AACGTGGGAAAAAAATGGAA+AGG | + | chr6_4:86028808-86028827 | None:intergenic | 35.0% | |
ACACATCCGACAAATCTATA+CGG | + | chr6_4:86029299-86029318 | None:intergenic | 35.0% | |
ATACACAACTATTGTGAGAG+TGG | + | chr6_4:86029392-86029411 | None:intergenic | 35.0% | |
ATTCATTACCTAGAAGAACC+CGG | + | chr6_4:86029506-86029525 | None:intergenic | 35.0% | |
ACCTACACTCAACACATATT+CGG | - | chr6_4:86030134-86030153 | Msa1001890:intron | 35.0% | |
AGTATCACCTGACTTTGATA+TGG | + | chr6_4:86030301-86030320 | None:intergenic | 35.0% | |
!! | AGAAAAGGAGTGTTTGTTGT+TGG | + | chr6_4:86028571-86028590 | None:intergenic | 35.0% |
ATGTTAGGGGTGAAAAGAAA+AGG | + | chr6_4:86028586-86028605 | None:intergenic | 35.0% | |
AAAAATGGAAAGGGACCAAA+AGG | + | chr6_4:86028798-86028817 | None:intergenic | 35.0% | |
ACGTGGGAAAAAAATGGAAA+GGG | + | chr6_4:86028807-86028826 | None:intergenic | 35.0% | |
AACGTGGGAAAAAAATGGAA+AGG | + | chr6_4:86028808-86028827 | None:intergenic | 35.0% | |
ACACATCCGACAAATCTATA+CGG | + | chr6_4:86029299-86029318 | None:intergenic | 35.0% | |
ATACACAACTATTGTGAGAG+TGG | + | chr6_4:86029392-86029411 | None:intergenic | 35.0% | |
ATTCATTACCTAGAAGAACC+CGG | + | chr6_4:86029506-86029525 | None:intergenic | 35.0% | |
ACCTACACTCAACACATATT+CGG | - | chr6_4:86030134-86030153 | Msa1001890:intron | 35.0% | |
AGTATCACCTGACTTTGATA+TGG | + | chr6_4:86030301-86030320 | None:intergenic | 35.0% | |
CATGGGTGGAATTGGAAAAT+AGG | - | chr6_4:86028959-86028978 | Msa1001890:intron | 40.0% | |
! | TGAGTTGAATCTACTCACCA+CGG | - | chr6_4:86029253-86029272 | Msa1001890:intron | 40.0% |
TCGATGCCGTATAGATTTGT+CGG | - | chr6_4:86029290-86029309 | Msa1001890:intron | 40.0% | |
TCCGAATATGTGTTGAGTGT+AGG | + | chr6_4:86030138-86030157 | None:intergenic | 40.0% | |
ACACTCAACACATATTCGGA+TGG | - | chr6_4:86030138-86030157 | Msa1001890:intron | 40.0% | |
CCAGCATCAATAAGAAAACC+AGG | + | chr6_4:86030246-86030265 | None:intergenic | 40.0% | |
!! | CCTGGTTTTCTTATTGATGC+TGG | - | chr6_4:86030243-86030262 | Msa1001890:five_prime_UTR | 40.0% |
CATGGGTGGAATTGGAAAAT+AGG | - | chr6_4:86028959-86028978 | Msa1001890:intron | 40.0% | |
! | TGAGTTGAATCTACTCACCA+CGG | - | chr6_4:86029253-86029272 | Msa1001890:intron | 40.0% |
TCGATGCCGTATAGATTTGT+CGG | - | chr6_4:86029290-86029309 | Msa1001890:intron | 40.0% | |
TCCGAATATGTGTTGAGTGT+AGG | + | chr6_4:86030138-86030157 | None:intergenic | 40.0% | |
ACACTCAACACATATTCGGA+TGG | - | chr6_4:86030138-86030157 | Msa1001890:intron | 40.0% | |
CCAGCATCAATAAGAAAACC+AGG | + | chr6_4:86030246-86030265 | None:intergenic | 40.0% | |
!! | CCTGGTTTTCTTATTGATGC+TGG | - | chr6_4:86030243-86030262 | Msa1001890:five_prime_UTR | 40.0% |
GGAAGAACAACACTCAAAGC+TGG | + | chr6_4:86028550-86028569 | None:intergenic | 45.0% | |
!! | CTATACGGCATCGATTCTGA+CGG | + | chr6_4:86029284-86029303 | None:intergenic | 45.0% |
CACAACTATTGTGAGAGTGG+CGG | + | chr6_4:86029389-86029408 | None:intergenic | 45.0% | |
TGTTACTACCGGGTTCTTCT+AGG | - | chr6_4:86029495-86029514 | Msa1001890:intron | 45.0% | |
TGGCAAGACAGAAACGATGA+AGG | - | chr6_4:86030219-86030238 | Msa1001890:intron | 45.0% | |
GGAAGAACAACACTCAAAGC+TGG | + | chr6_4:86028550-86028569 | None:intergenic | 45.0% | |
!! | CTATACGGCATCGATTCTGA+CGG | + | chr6_4:86029284-86029303 | None:intergenic | 45.0% |
CACAACTATTGTGAGAGTGG+CGG | + | chr6_4:86029389-86029408 | None:intergenic | 45.0% | |
TGTTACTACCGGGTTCTTCT+AGG | - | chr6_4:86029495-86029514 | Msa1001890:intron | 45.0% | |
TGGCAAGACAGAAACGATGA+AGG | - | chr6_4:86030219-86030238 | Msa1001890:intron | 45.0% | |
!! | ATTTATTAACTAATAAAAAA+GGG | + | chr6_4:86029085-86029104 | None:intergenic | 5.0% |
!! | TATTTATTAACTAATAAAAA+AGG | + | chr6_4:86029086-86029105 | None:intergenic | 5.0% |
!!! | TTATTTTTTAAGTAAAAAAA+GGG | + | chr6_4:86029135-86029154 | None:intergenic | 5.0% |
!!! | ATTATTTTTTAAGTAAAAAA+AGG | + | chr6_4:86029136-86029155 | None:intergenic | 5.0% |
!! | TAAATTATTGTAAAAATAAA+TGG | + | chr6_4:86029533-86029552 | None:intergenic | 5.0% |
!!! | TATATTTTTTTTTATCTATA+TGG | + | chr6_4:86029770-86029789 | None:intergenic | 5.0% |
!! | ATAAAAAAAAATATATTACA+TGG | - | chr6_4:86029775-86029794 | Msa1001890:intron | 5.0% |
!! | ATTTATTAACTAATAAAAAA+GGG | + | chr6_4:86029085-86029104 | None:intergenic | 5.0% |
!! | TATTTATTAACTAATAAAAA+AGG | + | chr6_4:86029086-86029105 | None:intergenic | 5.0% |
!!! | TTATTTTTTAAGTAAAAAAA+GGG | + | chr6_4:86029135-86029154 | None:intergenic | 5.0% |
!!! | ATTATTTTTTAAGTAAAAAA+AGG | + | chr6_4:86029136-86029155 | None:intergenic | 5.0% |
!! | TAAATTATTGTAAAAATAAA+TGG | + | chr6_4:86029533-86029552 | None:intergenic | 5.0% |
!!! | TATATTTTTTTTTATCTATA+TGG | + | chr6_4:86029770-86029789 | None:intergenic | 5.0% |
!! | ATAAAAAAAAATATATTACA+TGG | - | chr6_4:86029775-86029794 | Msa1001890:intron | 5.0% |
ATGAACCTCACGCTGAAGTG+TGG | - | chr6_4:86028924-86028943 | Msa1001890:intron | 50.0% | |
TCCAATTCCACCCATGCCAA+AGG | + | chr6_4:86028955-86028974 | None:intergenic | 50.0% | |
GTTGAATCTACTCACCACGG+CGG | - | chr6_4:86029256-86029275 | Msa1001890:intron | 50.0% | |
GACAGAAACGATGAAGGACC+TGG | - | chr6_4:86030225-86030244 | Msa1001890:intron | 50.0% | |
ATGAACCTCACGCTGAAGTG+TGG | - | chr6_4:86028924-86028943 | Msa1001890:intron | 50.0% | |
TCCAATTCCACCCATGCCAA+AGG | + | chr6_4:86028955-86028974 | None:intergenic | 50.0% | |
GTTGAATCTACTCACCACGG+CGG | - | chr6_4:86029256-86029275 | Msa1001890:intron | 50.0% | |
GACAGAAACGATGAAGGACC+TGG | - | chr6_4:86030225-86030244 | Msa1001890:intron | 50.0% | |
CAGCGTGAGGTTCATGCACA+TGG | + | chr6_4:86028919-86028938 | None:intergenic | 55.0% | |
CTGAAGTGTGGAGCTGCCTT+TGG | - | chr6_4:86028936-86028955 | Msa1001890:intron | 55.0% | |
TGTGGAGCTGCCTTTGGCAT+GGG | - | chr6_4:86028942-86028961 | Msa1001890:intron | 55.0% | |
GCCTTTGGCATGGGTGGAAT+TGG | - | chr6_4:86028951-86028970 | Msa1001890:intron | 55.0% | |
CAGCGTGAGGTTCATGCACA+TGG | + | chr6_4:86028919-86028938 | None:intergenic | 55.0% | |
CTGAAGTGTGGAGCTGCCTT+TGG | - | chr6_4:86028936-86028955 | Msa1001890:intron | 55.0% | |
TGTGGAGCTGCCTTTGGCAT+GGG | - | chr6_4:86028942-86028961 | Msa1001890:intron | 55.0% | |
GCCTTTGGCATGGGTGGAAT+TGG | - | chr6_4:86028951-86028970 | Msa1001890:intron | 55.0% | |
CAGCTCCACACTTCAGCGTG+AGG | + | chr6_4:86028932-86028951 | None:intergenic | 60.0% | |
GTGTGGAGCTGCCTTTGGCA+TGG | - | chr6_4:86028941-86028960 | Msa1001890:intron | 60.0% | |
CAGCTCCACACTTCAGCGTG+AGG | + | chr6_4:86028932-86028951 | None:intergenic | 60.0% | |
GTGTGGAGCTGCCTTTGGCA+TGG | - | chr6_4:86028941-86028960 | Msa1001890:intron | 60.0% | |
GGAGCTGCCTTTGGCATGGG+TGG | - | chr6_4:86028945-86028964 | Msa1001890:intron | 65.0% | |
CGATTCTGACGGTACCGCCG+TGG | + | chr6_4:86029273-86029292 | None:intergenic | 65.0% | |
GGAGCTGCCTTTGGCATGGG+TGG | - | chr6_4:86028945-86028964 | Msa1001890:intron | 65.0% | |
CGATTCTGACGGTACCGCCG+TGG | + | chr6_4:86029273-86029292 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_4 | gene | 86028547 | 86030386 | 86028547 | ID=Msa1001890;Name=Msa1001890 |
chr6_4 | mRNA | 86028547 | 86030386 | 86028547 | ID=Msa1001890-mRNA-1;Parent=Msa1001890;Name=Msa1001890-mRNA-1;_AED=0.22;_eAED=0.31;_QI=306|0.5|0.66|1|0|0|3|0|68 |
chr6_4 | exon | 86028547 | 86028833 | 86028547 | ID=Msa1001890-mRNA-1:exon:16961;Parent=Msa1001890-mRNA-1 |
chr6_4 | exon | 86029953 | 86030024 | 86029953 | ID=Msa1001890-mRNA-1:exon:16960;Parent=Msa1001890-mRNA-1 |
chr6_4 | exon | 86030236 | 86030386 | 86030236 | ID=Msa1001890-mRNA-1:exon:16959;Parent=Msa1001890-mRNA-1 |
chr6_4 | five_prime_UTR | 86030236 | 86030386 | 86030236 | ID=Msa1001890-mRNA-1:five_prime_utr;Parent=Msa1001890-mRNA-1 |
chr6_4 | five_prime_UTR | 86029953 | 86030024 | 86029953 | ID=Msa1001890-mRNA-1:five_prime_utr;Parent=Msa1001890-mRNA-1 |
chr6_4 | five_prime_UTR | 86028751 | 86028833 | 86028751 | ID=Msa1001890-mRNA-1:five_prime_utr;Parent=Msa1001890-mRNA-1 |
chr6_4 | CDS | 86028547 | 86028750 | 86028547 | ID=Msa1001890-mRNA-1:cds;Parent=Msa1001890-mRNA-1 |
Gene Sequence |
Protein sequence |