AlfalfaGEDB | Msa1072940

M. sativa cultivar zhongmu-4 / Msa1072940

KEGG: -
GO: GO:0005575 GO:0005623 GO:0005886 GO:0007623 GO:0008150 GO:0016020 GO:0044464 GO:0048511 GO:0071944
PFAM: PF16711.8

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1072940	sp\|F4IIZ9\|SCAB2_ARATH	63.083	493	176	4	1	488	1	492	0.0	635

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1072940	G7L5U6	98.367	490	8	0	1	490	1	490	0.0	996

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000050	Msa1072940	0.836133	1.118843e-56	-8.615850e-47
Msa0002580	Msa1072940	0.845063	5.130945e-59	-8.615850e-47
Msa0003080	Msa1072940	0.803459	3.451028e-49	-8.615850e-47
Msa0005890	Msa1072940	0.863121	3.120735e-64	-8.615850e-47
Msa0016040	Msa1072940	0.804850	1.772286e-49	-8.615850e-47
Msa0017670	Msa1072940	0.805911	1.062231e-49	-8.615850e-47
Msa0017930	Msa1072940	0.800888	1.166613e-48	-8.615850e-47
Msa0017950	Msa1072940	0.802082	6.641399e-49	-8.615850e-47
Msa0022260	Msa1072940	0.833288	5.810977e-56	-8.615850e-47
Msa0024000	Msa1072940	0.831873	1.303907e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1072940	MtrunA17_Chr7g0255781	98.367	490	8	0	1	490	1	490	0.0	996
Msa1072940	MtrunA17_Chr5g0441311	58.896	489	199	2	1	488	12	499	0.0	598
Msa1072940	MtrunA17_Chr3g0093711	59.221	488	193	3	1	487	1	483	0.0	589
Msa1072940	MtrunA17_Chr6g0482421	83.051	118	5	3	96	212	11	114	6.78e-54	177

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1072940	AT2G40820.4	63.083	493	176	4	1	488	26	517	0.0	635
Msa1072940	AT2G40820.2	63.083	493	176	4	1	488	1	492	0.0	635
Msa1072940	AT2G40820.1	63.083	493	176	4	1	488	1	492	0.0	635
Msa1072940	AT2G40820.3	64.211	475	166	3	17	488	31	504	0.0	628
Msa1072940	AT3G56480.1	63.008	492	176	5	1	488	1	490	0.0	615
Msa1072940	AT2G26770.2	59.918	489	194	2	1	488	1	488	0.0	607
Msa1072940	AT2G26770.3	59.918	489	194	2	1	488	1	488	0.0	607
Msa1072940	AT2G26770.1	59.918	489	194	2	1	488	1	488	0.0	607
Msa1072940	AT2G40820.5	64.230	383	133	3	109	488	1	382	2.97e-179	508

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Find 106 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAGTACCTGCATTGTT+GGG	0.381442	7_2:+70210465	None:intergenic
AAATAGTACCTGCATTGTTG+GGG	0.601497	7_2:+70210466	None:intergenic
AACAATGAGCAAGTGGGACA+AGG	0.579888	7_2:-70211787	Msa1072940:CDS
AACATTCTCCCAACATCAAG+GGG	0.616945	7_2:+70211039	None:intergenic
AACCTGTGGTTTAGAAGCTT+GGG	0.442649	7_2:+70212593	None:intergenic
AACTGCTTCCATTGGCATCT+TGG	0.307156	7_2:+70213817	None:intergenic
AAGAGAGGTTCCATCTTTGG+AGG	0.508874	7_2:-70213307	Msa1072940:CDS
AAGCTCACATCGGCCGAAAC+AGG	0.395391	7_2:+70213791	None:intergenic
AATATGAACTCCGTGCTCTA+AGG	0.326569	7_2:-70211958	Msa1072940:CDS
AATCGAGAGTGCTAGAGCAG+TGG	0.666858	7_2:-70212658	Msa1072940:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCGATAACATCTTTCAAAGA+AGG	+	chr7_2:70209967-70209986	None:intergenic	30.0%
TTGATATAAGCTCCAAAAGA+GGG	+	chr7_2:70210602-70210621	None:intergenic	30.0%
ATTGATATAAGCTCCAAAAG+AGG	+	chr7_2:70210603-70210622	None:intergenic	30.0%
CATATACAATATGGATACTG+TGG	+	chr7_2:70211495-70211514	None:intergenic	30.0%
TTCCCCATTCATATACAATA+TGG	+	chr7_2:70211504-70211523	None:intergenic	30.0%
CTTTACTGCTATCTAATTTG+AGG	-	chr7_2:70212281-70212300	Msa1072940:intron	30.0%
CAAATATGCAACCATCAAAT+TGG	+	chr7_2:70212540-70212559	None:intergenic	30.0%
ACAACTAATCCAATTCAAAC+CGG	-	chr7_2:70212677-70212696	Msa1072940:CDS	30.0%
AGATAAGTAGAAGAACATCA+AGG	+	chr7_2:70212966-70212985	None:intergenic	30.0%
CTAAAGAGAAACATTTGCTT+TGG	-	chr7_2:70212984-70213003	Msa1072940:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	70209675	70214000	70209675	ID=Msa1072940;Name=Msa1072940
chr7_2	mRNA	70209675	70214000	70209675	ID=Msa1072940-mRNA-1;Parent=Msa1072940;Name=Msa1072940-mRNA-1;_AED=0.15;_eAED=0.15;_QI=113\|1\|1\|1\|0.84\|0.71\|14\|96\|490
chr7_2	exon	70209675	70209736	70209675	ID=Msa1072940-mRNA-1:exon:15774;Parent=Msa1072940-mRNA-1
chr7_2	exon	70210047	70210113	70210047	ID=Msa1072940-mRNA-1:exon:15773;Parent=Msa1072940-mRNA-1
chr7_2	exon	70210228	70210377	70210228	ID=Msa1072940-mRNA-1:exon:15772;Parent=Msa1072940-mRNA-1
chr7_2	exon	70210475	70210609	70210475	ID=Msa1072940-mRNA-1:exon:15771;Parent=Msa1072940-mRNA-1
chr7_2	exon	70210826	70210884	70210826	ID=Msa1072940-mRNA-1:exon:15770;Parent=Msa1072940-mRNA-1
chr7_2	exon	70210977	70211090	70210977	ID=Msa1072940-mRNA-1:exon:15769;Parent=Msa1072940-mRNA-1
chr7_2	exon	70211631	70211811	70211631	ID=Msa1072940-mRNA-1:exon:15768;Parent=Msa1072940-mRNA-1
chr7_2	exon	70211910	70211993	70211910	ID=Msa1072940-mRNA-1:exon:15767;Parent=Msa1072940-mRNA-1
chr7_2	exon	70212307	70212375	70212307	ID=Msa1072940-mRNA-1:exon:15766;Parent=Msa1072940-mRNA-1
chr7_2	exon	70212596	70212736	70212596	ID=Msa1072940-mRNA-1:exon:15765;Parent=Msa1072940-mRNA-1
chr7_2	exon	70212846	70212938	70212846	ID=Msa1072940-mRNA-1:exon:15764;Parent=Msa1072940-mRNA-1
chr7_2	exon	70213209	70213337	70213209	ID=Msa1072940-mRNA-1:exon:15763;Parent=Msa1072940-mRNA-1
chr7_2	exon	70213583	70213935	70213583	ID=Msa1072940-mRNA-1:exon:15762;Parent=Msa1072940-mRNA-1
chr7_2	exon	70213956	70214000	70213956	ID=Msa1072940-mRNA-1:exon:15761;Parent=Msa1072940-mRNA-1
chr7_2	five_prime_UTR	70213956	70214000	70213956	ID=Msa1072940-mRNA-1:five_prime_utr;Parent=Msa1072940-mRNA-1
chr7_2	five_prime_UTR	70213868	70213935	70213868	ID=Msa1072940-mRNA-1:five_prime_utr;Parent=Msa1072940-mRNA-1
chr7_2	CDS	70213583	70213867	70213583	ID=Msa1072940-mRNA-1:cds;Parent=Msa1072940-mRNA-1
chr7_2	CDS	70213209	70213337	70213209	ID=Msa1072940-mRNA-1:cds;Parent=Msa1072940-mRNA-1
chr7_2	CDS	70212846	70212938	70212846	ID=Msa1072940-mRNA-1:cds;Parent=Msa1072940-mRNA-1
chr7_2	CDS	70212596	70212736	70212596	ID=Msa1072940-mRNA-1:cds;Parent=Msa1072940-mRNA-1
chr7_2	CDS	70212307	70212375	70212307	ID=Msa1072940-mRNA-1:cds;Parent=Msa1072940-mRNA-1
chr7_2	CDS	70211910	70211993	70211910	ID=Msa1072940-mRNA-1:cds;Parent=Msa1072940-mRNA-1
chr7_2	CDS	70211631	70211811	70211631	ID=Msa1072940-mRNA-1:cds;Parent=Msa1072940-mRNA-1
chr7_2	CDS	70210977	70211090	70210977	ID=Msa1072940-mRNA-1:cds;Parent=Msa1072940-mRNA-1
chr7_2	CDS	70210826	70210884	70210826	ID=Msa1072940-mRNA-1:cds;Parent=Msa1072940-mRNA-1
chr7_2	CDS	70210475	70210609	70210475	ID=Msa1072940-mRNA-1:cds;Parent=Msa1072940-mRNA-1
chr7_2	CDS	70210228	70210377	70210228	ID=Msa1072940-mRNA-1:cds;Parent=Msa1072940-mRNA-1
chr7_2	CDS	70210081	70210113	70210081	ID=Msa1072940-mRNA-1:cds;Parent=Msa1072940-mRNA-1
chr7_2	three_prime_UTR	70210047	70210080	70210047	ID=Msa1072940-mRNA-1:three_prime_utr;Parent=Msa1072940-mRNA-1
chr7_2	three_prime_UTR	70209675	70209736	70209675	ID=Msa1072940-mRNA-1:three_prime_utr;Parent=Msa1072940-mRNA-1

Gene Sequence

>Msa1072940

ATGACAAAGATTAGTCCTGAAATTGAAACCAAGATGCCAATGGAAGCAGTTCCGCCTGTTTCGGCCGATGTGAGCTTTATTTCTAATAGTTTTCCAAAGTATAAACTAGGGGCTGATCATCAAGTTTTTCAAGAGCCTGCTGAGGATAATCAGGGTCCTTCTTTGAAAGATGTTATCGAACAAGAAGCTTCCAATTTGTCAGAGCAGAACAAGCGTATCTCAGTTCGTGACCTTGCCAGTAAATTTGACAAGAACTTATCAGCAGCTGCTAAGCTGTCTAATGAGGCAAAGCTAAGAGAGGTTCCATCTTTGGAGGGGCATGTTCTTTTGAAGAAGCTAAGAGATGCATTAGAATATTTGAAAGGCCGTTTTACGGGAAGAAATAAAGAGGATGTGGCGAATGCTATCTCTATGGTGGAAGCTTTAGCTGTTAAGTTGACTCAGAATGAAGGAGAACTGATTCAAGAGAAGTTTGAAGTGAAAAAGCTTTTGAATTTTCTCAAACAGGCTTCTGAAGATGCTAAGAAGTTGGTTAATCAAGAGAAGTCTTTTGCTTGTGCCGAAATCGAGAGTGCTAGAGCAGTGGTGCTGAGAATTGGAGAGGCACTTGAGGAACAAGAAAAAGTTACCCAAGCTTCTAAACCACAGGATGTGGATGGACTGGTAGAAGAGGTTCAAGAGGCTAGAAGAATCAGATTGCTGCATCAGCCAAGCAAGGTTATGGCCATGGAATATGAACTCCGTGCTCTAAGGGATCAAATTCAAGAAAAATCGGTATTTTCAATTCAGCTTCAGAAAGAGCTAACAATGAGCAAGTGGGACAAGGAGAATAAATCTCATTCATATAAGTTAGATGGTTCTGAAGCTTTGGGTTCATATATGCAAGTCAAGCCTTGCACGAATGAAGTGCCACAGGTTTCAAAATGTTCATTTCAGTGGTATCGCTTGTCATCTGAAGGCAGCTGGAGGGAAGTTATTTCAGGTGCCAACAAATCAATATATGCTCCTGATCCCCTTGATGTTGGGAGAATGTTACAAGTGGACATTGTCTCCGATGGCAAAAAACTTACACTAACAACTAATCCAATTCAAACCGTCCCAGGACTCGGAAGCCATGTGGAGGCACTTCTCCGAAAATCCAACACCGACTTTAATGTAGTTATTTCTCAGATGAATGGAAAAGATCACTCATCACATTCTACTCATTCATTTAATGTGGGGAGAATGAGGATAAAGCTATGTAGGGGTTGGATCACAAAAGCTAGAGAGATTTACTCCCCAACAATGCAGCTATGCGGAGTCAGAAGTGATGTCGGTAACGCAGCGAAGGCACTATTTTGGCAAGCAAGAAAAGGGCTATCGTTTGTGTTAACCTTTGAATCAGAGAAAGATAGAAATGTTGCGATTATGATCGCCAGGAAACATGCTCTTGATTGCAATGTTGTGCTTGCTGGGCCAGATGATCTAGTGTAG

Protein sequence

>Msa1072940

MTKISPEIETKMPMEAVPPVSADVSFISNSFPKYKLGADHQVFQEPAEDNQGPSLKDVIEQEASNLSEQNKRISVRDLASKFDKNLSAAAKLSNEAKLREVPSLEGHVLLKKLRDALEYLKGRFTGRNKEDVANAISMVEALAVKLTQNEGELIQEKFEVKKLLNFLKQASEDAKKLVNQEKSFACAEIESARAVVLRIGEALEEQEKVTQASKPQDVDGLVEEVQEARRIRLLHQPSKVMAMEYELRALRDQIQEKSVFSIQLQKELTMSKWDKENKSHSYKLDGSEALGSYMQVKPCTNEVPQVSKCSFQWYRLSSEGSWREVISGANKSIYAPDPLDVGRMLQVDIVSDGKKLTLTTNPIQTVPGLGSHVEALLRKSNTDFNVVISQMNGKDHSSHSTHSFNVGRMRIKLCRGWITKAREIYSPTMQLCGVRSDVGNAAKALFWQARKGLSFVLTFESEKDRNVAIMIARKHALDCNVVLAGPDDLV*