Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0582180 | XP_039688999.1 | 98.397 | 686 | 11 | 0 | 1 | 686 | 1 | 686 | 0.0 | 1383 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0582180 | sp|Q9LX73|UFL1_ARATH | 60.116 | 687 | 254 | 3 | 1 | 686 | 1 | 668 | 0.0 | 825 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015090 | Msa0582180 | 0.806748 | 7.076518e-50 | -8.615850e-47 |
| Msa0023330 | Msa0582180 | 0.810245 | 1.268541e-50 | -8.615850e-47 |
| Msa0028550 | Msa0582180 | 0.803950 | 2.728825e-49 | -8.615850e-47 |
| Msa0028620 | Msa0582180 | 0.805832 | 1.103408e-49 | -8.615850e-47 |
| Msa0029240 | Msa0582180 | 0.808590 | 2.874620e-50 | -8.615850e-47 |
| Msa0031180 | Msa0582180 | 0.815109 | 1.093868e-51 | -8.615850e-47 |
| Msa0034180 | Msa0582180 | 0.821818 | 3.297680e-53 | -8.615850e-47 |
| Msa0034400 | Msa0582180 | 0.804549 | 2.048397e-49 | -8.615850e-47 |
| Msa0036140 | Msa0582180 | 0.810656 | 1.034316e-50 | -8.615850e-47 |
| Msa0044090 | Msa0582180 | 0.831734 | 1.411187e-55 | -8.615850e-47 |
| Msa0049750 | Msa0582180 | 0.810221 | 1.283703e-50 | -8.615850e-47 |
| Msa0054820 | Msa0582180 | 0.820100 | 8.196529e-53 | -8.615850e-47 |
| Msa0058600 | Msa0582180 | 0.846505 | 2.082516e-59 | -8.615850e-47 |
| Msa0064110 | Msa0582180 | 0.824894 | 6.302853e-54 | -8.615850e-47 |
| Msa0077450 | Msa0582180 | 0.805778 | 1.132699e-49 | -8.615850e-47 |
| Msa0078480 | Msa0582180 | 0.803341 | 3.651368e-49 | -8.615850e-47 |
| Msa0081900 | Msa0582180 | 0.828623 | 8.110343e-55 | -8.615850e-47 |
| Msa0083090 | Msa0582180 | 0.815991 | 6.961219e-52 | -8.615850e-47 |
| Msa0085370 | Msa0582180 | 0.805864 | 1.086724e-49 | -8.615850e-47 |
| Msa0097320 | Msa0582180 | 0.807959 | 3.916980e-50 | -8.615850e-47 |
| Msa0122580 | Msa0582180 | 0.822302 | 2.546987e-53 | -8.615850e-47 |
| Msa0124320 | Msa0582180 | 0.829917 | 3.936750e-55 | -8.615850e-47 |
| Msa0128180 | Msa0582180 | 0.828718 | 7.694930e-55 | -8.615850e-47 |
| Msa0143850 | Msa0582180 | 0.827928 | 1.193088e-54 | -8.615850e-47 |
| Msa0171200 | Msa0582180 | 0.804104 | 2.535270e-49 | -8.615850e-47 |
| Msa0175420 | Msa0582180 | 0.803794 | 2.940506e-49 | -8.615850e-47 |
| Msa0183760 | Msa0582180 | 0.837399 | 5.318592e-57 | -8.615850e-47 |
| Msa0189610 | Msa0582180 | 0.807239 | 5.570619e-50 | -8.615850e-47 |
| Msa0189710 | Msa0582180 | 0.805250 | 1.461500e-49 | -8.615850e-47 |
| Msa0200580 | Msa0582180 | 0.810357 | 1.199841e-50 | -8.615850e-47 |
| Msa0204840 | Msa0582180 | 0.803814 | 2.912306e-49 | -8.615850e-47 |
| Msa0206010 | Msa0582180 | 0.825572 | 4.358280e-54 | -8.615850e-47 |
| Msa0218370 | Msa0582180 | 0.811429 | 7.032258e-51 | -8.615850e-47 |
| Msa0218460 | Msa0582180 | 0.809954 | 1.465496e-50 | -8.615850e-47 |
| Msa0223910 | Msa0582180 | 0.819030 | 1.438520e-52 | -8.615850e-47 |
| Msa0225220 | Msa0582180 | 0.840218 | 9.927500e-58 | -8.615850e-47 |
| Msa0226180 | Msa0582180 | 0.820875 | 5.443357e-53 | -8.615850e-47 |
| Msa0231240 | Msa0582180 | 0.807423 | 5.092425e-50 | -8.615850e-47 |
| Msa0232020 | Msa0582180 | 0.827506 | 1.506746e-54 | -8.615850e-47 |
| Msa0232090 | Msa0582180 | 0.807360 | 5.251439e-50 | -8.615850e-47 |
| Msa0232340 | Msa0582180 | 0.805705 | 1.173427e-49 | -8.615850e-47 |
| Msa0236420 | Msa0582180 | 0.809338 | 1.987632e-50 | -8.615850e-47 |
| Msa0371950 | Msa0582180 | 0.806346 | 8.601936e-50 | -8.615850e-47 |
| Msa0379610 | Msa0582180 | 0.843774 | 1.139067e-58 | -8.615850e-47 |
| Msa0389910 | Msa0582180 | 0.810603 | 1.061907e-50 | -8.615850e-47 |
| Msa0393430 | Msa0582180 | 0.804411 | 2.187942e-49 | -8.615850e-47 |
| Msa0395480 | Msa0582180 | 0.803403 | 3.544097e-49 | -8.615850e-47 |
| Msa0398200 | Msa0582180 | 0.818885 | 1.551823e-52 | -8.615850e-47 |
| Msa0410580 | Msa0582180 | 0.807237 | 5.576339e-50 | -8.615850e-47 |
| Msa0414140 | Msa0582180 | 0.806069 | 9.837957e-50 | -8.615850e-47 |
| Msa0417650 | Msa0582180 | 0.801071 | 1.070437e-48 | -8.615850e-47 |
| Msa0423840 | Msa0582180 | 0.809183 | 2.145603e-50 | -8.615850e-47 |
| Msa0428970 | Msa0582180 | 0.805075 | 1.590167e-49 | -8.615850e-47 |
| Msa0432170 | Msa0582180 | 0.812479 | 4.151998e-51 | -8.615850e-47 |
| Msa0455760 | Msa0582180 | 0.832579 | 8.721293e-56 | -8.615850e-47 |
| Msa0473980 | Msa0582180 | 0.813127 | 2.995739e-51 | -8.615850e-47 |
| Msa0475450 | Msa0582180 | 0.806488 | 8.027649e-50 | -8.615850e-47 |
| Msa0476680 | Msa0582180 | 0.809501 | 1.834298e-50 | -8.615850e-47 |
| Msa0243250 | Msa0582180 | 0.806377 | 8.471483e-50 | -8.615850e-47 |
| Msa0244880 | Msa0582180 | 0.802747 | 4.845301e-49 | -8.615850e-47 |
| Msa0249100 | Msa0582180 | 0.818804 | 1.618884e-52 | -8.615850e-47 |
| Msa0264830 | Msa0582180 | 0.811132 | 8.158112e-51 | -8.615850e-47 |
| Msa0265150 | Msa0582180 | 0.839772 | 1.297427e-57 | -8.615850e-47 |
| Msa0270960 | Msa0582180 | 0.808154 | 3.559533e-50 | -8.615850e-47 |
| Msa0271550 | Msa0582180 | 0.830674 | 2.571652e-55 | -8.615850e-47 |
| Msa0271790 | Msa0582180 | 0.802021 | 6.836070e-49 | -8.615850e-47 |
| Msa0280150 | Msa0582180 | 0.848018 | 8.008709e-60 | -8.615850e-47 |
| Msa0302870 | Msa0582180 | 0.804529 | 2.068065e-49 | -8.615850e-47 |
| Msa0303150 | Msa0582180 | 0.801921 | 7.166891e-49 | -8.615850e-47 |
| Msa0305330 | Msa0582180 | 0.840695 | 7.445979e-58 | -8.615850e-47 |
| Msa0307310 | Msa0582180 | 0.805701 | 1.175573e-49 | -8.615850e-47 |
| Msa0308460 | Msa0582180 | 0.863416 | 2.529363e-64 | -8.615850e-47 |
| Msa0310090 | Msa0582180 | 0.804981 | 1.664176e-49 | -8.615850e-47 |
| Msa0319290 | Msa0582180 | 0.824145 | 9.460901e-54 | -8.615850e-47 |
| Msa0320800 | Msa0582180 | 0.804390 | 2.210537e-49 | -8.615850e-47 |
| Msa0323370 | Msa0582180 | 0.801226 | 9.949428e-49 | -8.615850e-47 |
| Msa0326110 | Msa0582180 | 0.819206 | 1.311571e-52 | -8.615850e-47 |
| Msa0340340 | Msa0582180 | 0.812165 | 4.864123e-51 | -8.615850e-47 |
| Msa0342010 | Msa0582180 | 0.818663 | 1.742516e-52 | -8.615850e-47 |
| Msa0347950 | Msa0582180 | 0.809914 | 1.495088e-50 | -8.615850e-47 |
| Msa0483740 | Msa0582180 | 0.800663 | 1.296473e-48 | -8.615850e-47 |
| Msa0486690 | Msa0582180 | 0.817438 | 3.297693e-52 | -8.615850e-47 |
| Msa0487720 | Msa0582180 | 0.806425 | 8.276930e-50 | -8.615850e-47 |
| Msa0512870 | Msa0582180 | 0.804284 | 2.325970e-49 | -8.615850e-47 |
| Msa0521010 | Msa0582180 | 0.810263 | 1.257482e-50 | -8.615850e-47 |
| Msa0526070 | Msa0582180 | -0.805628 | 1.217824e-49 | -8.615850e-47 |
| Msa0530290 | Msa0582180 | 0.802450 | 5.577182e-49 | -8.615850e-47 |
| Msa0547750 | Msa0582180 | 0.814288 | 1.662812e-51 | -8.615850e-47 |
| Msa0559500 | Msa0582180 | 0.836327 | 9.986811e-57 | -8.615850e-47 |
| Msa0579200 | Msa0582180 | 0.822433 | 2.375217e-53 | -8.615850e-47 |
| Msa0582180 | Msa0610670 | 0.812898 | 3.363255e-51 | -8.615850e-47 |
| Msa0582180 | Msa0613710 | 0.806083 | 9.773089e-50 | -8.615850e-47 |
| Msa0582180 | Msa0614360 | 0.806732 | 7.130221e-50 | -8.615850e-47 |
| Msa0582180 | Msa0615010 | 0.803368 | 3.605161e-49 | -8.615850e-47 |
| Msa0582180 | Msa0622170 | -0.805841 | 1.098711e-49 | -8.615850e-47 |
| Msa0582180 | Msa0623070 | 0.858276 | 9.207423e-63 | -8.615850e-47 |
| Msa0582180 | Msa0629430 | 0.827238 | 1.747224e-54 | -8.615850e-47 |
| Msa0582180 | Msa0641730 | 0.801434 | 9.019313e-49 | -8.615850e-47 |
| Msa0582180 | Msa0642730 | 0.804695 | 1.909543e-49 | -8.615850e-47 |
| Msa0582180 | Msa0651270 | 0.801269 | 9.751822e-49 | -8.615850e-47 |
| Msa0582180 | Msa0651830 | 0.800750 | 1.244757e-48 | -8.615850e-47 |
| Msa0582180 | Msa0662550 | 0.817398 | 3.367332e-52 | -8.615850e-47 |
| Msa0582180 | Msa0685750 | 0.807414 | 5.113762e-50 | -8.615850e-47 |
| Msa0582180 | Msa0689760 | 0.810253 | 1.263790e-50 | -8.615850e-47 |
| Msa0582180 | Msa0696850 | 0.802779 | 4.771040e-49 | -8.615850e-47 |
| Msa0582180 | Msa0713380 | 0.809613 | 1.735705e-50 | -8.615850e-47 |
| Msa0582180 | Msa0713510 | 0.825046 | 5.801795e-54 | -8.615850e-47 |
| Msa0582180 | Msa0741070 | 0.812831 | 3.478417e-51 | -8.615850e-47 |
| Msa0582180 | Msa0749440 | 0.800882 | 1.169734e-48 | -8.615850e-47 |
| Msa0582180 | Msa0756380 | 0.804356 | 2.246897e-49 | -8.615850e-47 |
| Msa0582180 | Msa0763890 | 0.867966 | 9.265354e-66 | -8.615850e-47 |
| Msa0582180 | Msa0763920 | 0.864965 | 8.317216e-65 | -8.615850e-47 |
| Msa0582180 | Msa0780280 | 0.810889 | 9.209764e-51 | -8.615850e-47 |
| Msa0582180 | Msa0796300 | 0.812981 | 3.225100e-51 | -8.615850e-47 |
| Msa0582180 | Msa0797770 | 0.824035 | 1.003817e-53 | -8.615850e-47 |
| Msa0582180 | Msa0817460 | 0.801895 | 7.257052e-49 | -8.615850e-47 |
| Msa0582180 | Msa0821800 | 0.806050 | 9.929382e-50 | -8.615850e-47 |
| Msa0582180 | Msa0828660 | 0.844801 | 6.036774e-59 | -8.615850e-47 |
| Msa0582180 | Msa0835230 | 0.821854 | 3.236285e-53 | -8.615850e-47 |
| Msa0582180 | Msa0844110 | 0.839854 | 1.235281e-57 | -8.615850e-47 |
| Msa0582180 | Msa0847210 | 0.823161 | 1.607566e-53 | -8.615850e-47 |
| Msa0582180 | Msa0899970 | 0.818676 | 1.730853e-52 | -8.615850e-47 |
| Msa0582180 | Msa0902710 | 0.834026 | 3.801572e-56 | -8.615850e-47 |
| Msa0582180 | Msa0927310 | 0.817495 | 3.202165e-52 | -8.615850e-47 |
| Msa0582180 | Msa0944790 | 0.802746 | 4.846847e-49 | -8.615850e-47 |
| Msa0582180 | Msa0958030 | 0.807649 | 4.558381e-50 | -8.615850e-47 |
| Msa0582180 | Msa0965290 | 0.807364 | 5.241761e-50 | -8.615850e-47 |
| Msa0582180 | Msa0981040 | 0.811885 | 5.597724e-51 | -8.615850e-47 |
| Msa0582180 | Msa0983770 | 0.804638 | 1.962269e-49 | -8.615850e-47 |
| Msa0582180 | Msa0986510 | 0.824794 | 6.652565e-54 | -8.615850e-47 |
| Msa0582180 | Msa0992600 | 0.811748 | 5.995522e-51 | -8.615850e-47 |
| Msa0582180 | Msa0999290 | 0.811418 | 7.072232e-51 | -8.615850e-47 |
| Msa0582180 | Msa0999680 | 0.808664 | 2.771148e-50 | -8.615850e-47 |
| Msa0582180 | Msa1002050 | 0.804924 | 1.710511e-49 | -8.615850e-47 |
| Msa0582180 | Msa1014010 | 0.826393 | 2.781070e-54 | -8.615850e-47 |
| Msa0582180 | Msa1038640 | 0.807998 | 3.842762e-50 | -8.615850e-47 |
| Msa0582180 | Msa1039710 | -0.805841 | 1.098711e-49 | -8.615850e-47 |
| Msa0582180 | Msa1063400 | 0.829354 | 5.395404e-55 | -8.615850e-47 |
| Msa0582180 | Msa1065430 | 0.811545 | 6.636235e-51 | -8.615850e-47 |
| Msa0582180 | Msa1081330 | 0.812437 | 4.242427e-51 | -8.615850e-47 |
| Msa0582180 | Msa1093480 | 0.831140 | 1.976551e-55 | -8.615850e-47 |
| Msa0582180 | Msa1096060 | 0.800848 | 1.188588e-48 | -8.615850e-47 |
| Msa0582180 | Msa1143850 | 0.824792 | 6.661930e-54 | -8.615850e-47 |
| Msa0582180 | Msa1147740 | 0.806284 | 8.863408e-50 | -8.615850e-47 |
| Msa0582180 | Msa1161810 | 0.806414 | 8.322605e-50 | -8.615850e-47 |
| Msa0582180 | Msa1208370 | 0.805692 | 1.180594e-49 | -8.615850e-47 |
| Msa0582180 | Msa1220940 | 0.802267 | 6.082820e-49 | -8.615850e-47 |
| Msa0582180 | Msa1224580 | -0.808889 | 2.481144e-50 | -8.615850e-47 |
| Msa0582180 | Msa1288450 | 0.838840 | 2.264282e-57 | -8.615850e-47 |
| Msa0582180 | Msa1304890 | -0.809404 | 1.924356e-50 | -8.615850e-47 |
| Msa0582180 | Msa1305350 | 0.806148 | 9.467759e-50 | -8.615850e-47 |
| Msa0582180 | Msa1332050 | 0.807718 | 4.408694e-50 | -8.615850e-47 |
| Msa0582180 | Msa1333730 | 0.838813 | 2.300230e-57 | -8.615850e-47 |
| Msa0582180 | Msa1338400 | 0.808508 | 2.991782e-50 | -8.615850e-47 |
| Msa0582180 | Msa1349450 | 0.843011 | 1.821446e-58 | -8.615850e-47 |
| Msa0582180 | Msa1372150 | 0.806737 | 7.114312e-50 | -8.615850e-47 |
| Msa0582180 | Msa1392790 | 0.810889 | 9.209764e-51 | -8.615850e-47 |
| Msa0582180 | Msa1400930 | 0.803938 | 2.745323e-49 | -8.615850e-47 |
| Msa0582180 | Msa1401460 | 0.888213 | 7.205159e-73 | -8.615850e-47 |
| Msa0582180 | Msa1420250 | 0.808524 | 2.969640e-50 | -8.615850e-47 |
| Msa0582180 | Msa1430550 | 0.817369 | 3.418280e-52 | -8.615850e-47 |
| Msa0582180 | Msa1437330 | 0.800031 | 1.743993e-48 | -8.615850e-47 |
| Msa0582180 | Msa1446780 | 0.801534 | 8.607143e-49 | -8.615850e-47 |
| Msa0582180 | Msa1462360 | 0.804464 | 2.133094e-49 | -8.615850e-47 |
| Msa0582180 | Msa1462930 | 0.801222 | 9.968023e-49 | -8.615850e-47 |
| Msa0582180 | Msa1463030 | 0.810628 | 1.048679e-50 | -8.615850e-47 |
| Msa0582180 | Msa1465210 | 0.820772 | 5.748555e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0582180 | MtrunA17_Chr4g0030541 | 98.397 | 686 | 11 | 0 | 1 | 686 | 1 | 686 | 0.0 | 1383 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0582180 | AT3G46220.1 | 60.116 | 687 | 254 | 3 | 1 | 686 | 1 | 668 | 0.0 | 825 |
| Msa0582180 | AT3G46220.4 | 60.116 | 687 | 254 | 3 | 1 | 686 | 1 | 668 | 0.0 | 824 |
| Msa0582180 | AT3G46220.2 | 59.424 | 695 | 254 | 4 | 1 | 686 | 1 | 676 | 0.0 | 817 |
| Msa0582180 | AT3G46220.3 | 58.370 | 687 | 250 | 4 | 1 | 686 | 1 | 652 | 0.0 | 791 |
Find 148 sgRNAs with CRISPR-Local
Find 303 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTCCAGTCTTTGTTTAA+TGG | 0.150208 | 4_2:-333328 | Msa0582180:CDS |
| GGATTTGATTGCGTCTATTT+TGG | 0.155034 | 4_2:-333642 | Msa0582180:CDS |
| TCTAACAAAGCACACATATT+TGG | 0.182367 | 4_2:-332285 | Msa0582180:CDS |
| GGCCTTTGGCTAACAAATTA+AGG | 0.230421 | 4_2:-331092 | Msa0582180:CDS |
| GAGCTTCTTCATACTGCTTC+TGG | 0.232031 | 4_2:-334585 | Msa0582180:CDS |
| TCCCAGAGCTCTTGCAAATA+AGG | 0.240932 | 4_2:-330109 | Msa0582180:CDS |
| ATCATCTTCAAACAATTCTA+AGG | 0.250541 | 4_2:+330808 | None:intergenic |
| AAATTATTACGGAGTCTTAC+TGG | 0.262997 | 4_2:-333754 | Msa0582180:CDS |
| CTAACAAAGCACACATATTT+GGG | 0.278844 | 4_2:-332284 | Msa0582180:CDS |
| TAAAGGGCCAAAGAAGAAAA+AGG | 0.281971 | 4_2:-331467 | Msa0582180:CDS |
| GAAGTATGTTCTTGGTTATC+AGG | 0.292210 | 4_2:+331400 | None:intergenic |
| AGGTTTGCCTTCAGGATATC+TGG | 0.297355 | 4_2:+332698 | None:intergenic |
| TTAGCTGTTTCAAGGTCTTT+AGG | 0.316152 | 4_2:-331607 | Msa0582180:CDS |
| TCAAACAAGCATGCTGATAA+AGG | 0.317743 | 4_2:-331484 | Msa0582180:CDS |
| ATCGATCTTGCTGATGTTAC+TGG | 0.324699 | 4_2:-333854 | Msa0582180:CDS |
| GTAACAAGAGGTTTGCCTTC+AGG | 0.329190 | 4_2:+332690 | None:intergenic |
| AGACCTTGTTCTTCAAAATC+AGG | 0.330357 | 4_2:+331220 | None:intergenic |
| GTTGCTGAGGTGAAGAAGTT+AGG | 0.347127 | 4_2:-333890 | Msa0582180:CDS |
| ATCTGTACAATTGGCACTTA+AGG | 0.357383 | 4_2:-332382 | Msa0582180:intron |
| TGTTTGTTGTGGGACGAAAT+TGG | 0.365397 | 4_2:+334904 | None:intergenic |
| CGAAACGATTCTTAGGCCTT+TGG | 0.365599 | 4_2:-331106 | Msa0582180:CDS |
| GCAGAATTTACTACAAGAAA+TGG | 0.369393 | 4_2:-333383 | Msa0582180:CDS |
| GCTAGTGGTGTGGCTGTTGA+TGG | 0.370444 | 4_2:-333355 | Msa0582180:CDS |
| CAGATTCAAAGCCAGGTTCT+AGG | 0.373865 | 4_2:-331324 | Msa0582180:CDS |
| CAAAGGCCTAAGAATCGTTT+CGG | 0.385086 | 4_2:+331107 | None:intergenic |
| CCAGCCCATTCAATTCTTGC+AGG | 0.389058 | 4_2:-332851 | Msa0582180:intron |
| CGACGAACTTGACAGTGTTA+TGG | 0.390294 | 4_2:-333414 | Msa0582180:CDS |
| GGTATTTGCTGTTGCTCAAA+AGG | 0.395194 | 4_2:-333098 | Msa0582180:CDS |
| TAGAGACATTAGCTGTTTCA+AGG | 0.395214 | 4_2:-331615 | Msa0582180:CDS |
| TGTAAAAGATGAGGGCAATA+AGG | 0.397783 | 4_2:+332440 | None:intergenic |
| AGCCTTATTTGCAAGAGCTC+TGG | 0.397884 | 4_2:+330107 | None:intergenic |
| GTTGAGTGAGTCCAGTGATA+TGG | 0.400982 | 4_2:-331521 | Msa0582180:CDS |
| CTTGTACTATGTTGAGAAGT+TGG | 0.407899 | 4_2:-333825 | Msa0582180:CDS |
| AACGAAATAGACTCGGACTT+TGG | 0.407948 | 4_2:+330497 | None:intergenic |
| AAATTAAGGCCTACAATAAT+CGG | 0.409313 | 4_2:-331078 | Msa0582180:CDS |
| ATGATCCCGAAACGATTCTT+AGG | 0.413786 | 4_2:-331113 | Msa0582180:CDS |
| GAATCAAGGGGAAATTATTA+CGG | 0.415672 | 4_2:-333765 | Msa0582180:CDS |
| TCGATCGGATAATCGAATAC+TGG | 0.419545 | 4_2:+334659 | None:intergenic |
| GCCTTATTTGCAAGAGCTCT+GGG | 0.426131 | 4_2:+330108 | None:intergenic |
| CTGCAAGAATTGAATGGGCT+GGG | 0.428207 | 4_2:+332852 | None:intergenic |
| AGGTGCTGCAAGGGGTATTA+CGG | 0.428595 | 4_2:-333440 | Msa0582180:CDS |
| ATGTAGTCAGATTGCTTTGA+CGG | 0.434988 | 4_2:-333693 | Msa0582180:CDS |
| GAGTCTATTTCGTTTGGTCC+TGG | 0.436482 | 4_2:-330488 | Msa0582180:CDS |
| AGTTACCTGCAAGAATTGAA+TGG | 0.442405 | 4_2:+332846 | None:intergenic |
| TGATATGCTTCTTCATGACT+TGG | 0.442992 | 4_2:-330646 | Msa0582180:intron |
| TCTAGCATCTCAATCATTGA+TGG | 0.444749 | 4_2:+332654 | None:intergenic |
| TACTCTTTGATTGTTTGTTG+TGG | 0.445039 | 4_2:+334893 | None:intergenic |
| CTCCATGATCCATTCTTCTG+AGG | 0.446930 | 4_2:+331261 | None:intergenic |
| TCCATGATCCATTCTTCTGA+GGG | 0.447510 | 4_2:+331262 | None:intergenic |
| ACTCTTTGATTGTTTGTTGT+GGG | 0.447829 | 4_2:+334894 | None:intergenic |
| ATGTATCCTTACCCCTTCTC+TGG | 0.448426 | 4_2:+331359 | None:intergenic |
| AAGGACAGTAGCAGCTCCTA+TGG | 0.468025 | 4_2:-330670 | Msa0582180:CDS |
| AAAATAGGTGAAAGGAAGGC+TGG | 0.472868 | 4_2:-333518 | Msa0582180:intron |
| CCTCTGTCAATCTGTACAAT+TGG | 0.473516 | 4_2:-332391 | Msa0582180:CDS |
| TCAGTAATCCCTCAGAAGAA+TGG | 0.473944 | 4_2:-331270 | Msa0582180:CDS |
| AAGTCCGAGTCTATTTCGTT+TGG | 0.475727 | 4_2:-330494 | Msa0582180:CDS |
| CAAACATCAGATTCAAAGCC+AGG | 0.475978 | 4_2:-331331 | Msa0582180:CDS |
| ACAATTGCAGCTCTTTCTCC+AGG | 0.477560 | 4_2:+330470 | None:intergenic |
| ATCCAAGTACCGATTATTGT+AGG | 0.478083 | 4_2:+331069 | None:intergenic |
| GTTACCTGCAAGAATTGAAT+GGG | 0.480088 | 4_2:+332847 | None:intergenic |
| CAAACAAGCATGCTGATAAA+GGG | 0.481031 | 4_2:-331483 | Msa0582180:CDS |
| CAAGTCCATTAAACAAAGAC+TGG | 0.481057 | 4_2:+333323 | None:intergenic |
| CCTGCAAGAATTGAATGGGC+TGG | 0.481773 | 4_2:+332851 | None:intergenic |
| ACCATCACTCGCCATATCAC+TGG | 0.484013 | 4_2:+331510 | None:intergenic |
| AAAGGCCTAAGAATCGTTTC+GGG | 0.485000 | 4_2:+331108 | None:intergenic |
| CATGGTTCGAGGTGCTGCAA+GGG | 0.489197 | 4_2:-333449 | Msa0582180:CDS |
| CCATGGTTCGAGGTGCTGCA+AGG | 0.490990 | 4_2:-333450 | Msa0582180:CDS |
| TACAATAATCGGTACTTGGA+TGG | 0.492143 | 4_2:-331067 | Msa0582180:CDS |
| CTTGCGGCGCAGTTGAATGT+TGG | 0.492333 | 4_2:-333668 | Msa0582180:CDS |
| GGCCTACAATAATCGGTACT+TGG | 0.493020 | 4_2:-331071 | Msa0582180:CDS |
| TTTGTTTAATGGACTTGTGA+AGG | 0.496709 | 4_2:-333317 | Msa0582180:CDS |
| AAGAGCTCTGGGAAAACTCT+TGG | 0.498310 | 4_2:+330119 | None:intergenic |
| AATTATTACGGAGTCTTACT+GGG | 0.499853 | 4_2:-333753 | Msa0582180:CDS |
| GGCGCAGTTGAATGTTGGTT+TGG | 0.502490 | 4_2:-333663 | Msa0582180:CDS |
| GCAGAATTGATGTTGAATCA+AGG | 0.510377 | 4_2:-333779 | Msa0582180:CDS |
| GCTGAGCAGCAGCTTTATGA+AGG | 0.512016 | 4_2:-332250 | Msa0582180:intron |
| CTCATTAATCTCTTCAGCAA+TGG | 0.513124 | 4_2:+333727 | None:intergenic |
| TTGCTGAGGTGAAGAAGTTA+GGG | 0.514417 | 4_2:-333889 | Msa0582180:CDS |
| TTTGAAAATAGGTGAAAGGA+AGG | 0.516894 | 4_2:-333522 | Msa0582180:intron |
| GGCCTTAATTTGTTAGCCAA+AGG | 0.518576 | 4_2:+331090 | None:intergenic |
| AGTGATTCTTTCCTAGAACC+TGG | 0.521168 | 4_2:+331313 | None:intergenic |
| CCGTTCGCGCTGGAGTACAT+TGG | 0.525009 | 4_2:-333276 | Msa0582180:CDS |
| TCTTGCTGTTGTAGAAGCAT+TGG | 0.532428 | 4_2:-330085 | Msa0582180:CDS |
| CAGAATTGATGTTGAATCAA+GGG | 0.534268 | 4_2:-333778 | Msa0582180:CDS |
| AGAATCACTTAAAATGAAAG+AGG | 0.537589 | 4_2:-331299 | Msa0582180:CDS |
| TAATTCAACGACGTTTCGAT+CGG | 0.539095 | 4_2:+334644 | None:intergenic |
| AATCTAAGAAAGGCCAGAGA+AGG | 0.539351 | 4_2:-331372 | Msa0582180:CDS |
| ATGCTCTAGAACGTGGAAGC+TGG | 0.540745 | 4_2:-332617 | Msa0582180:intron |
| TGAACAAATGTTGTAACAAG+AGG | 0.541010 | 4_2:+332678 | None:intergenic |
| ATTGCCAATGAAGTAAAAGC+AGG | 0.541196 | 4_2:-331559 | Msa0582180:CDS |
| TGTTGCTCGTGTTAGTGCCA+TGG | 0.543356 | 4_2:-333467 | Msa0582180:CDS |
| TTGGCAATTGGTAAATCACC+AGG | 0.544699 | 4_2:+331574 | None:intergenic |
| TCTTTAGGCACTGCAAAACC+TGG | 0.545497 | 4_2:-331592 | Msa0582180:CDS |
| CCTTGCAGCACCTCGAACCA+TGG | 0.546871 | 4_2:+333450 | None:intergenic |
| ATCTAAGAAAGGCCAGAGAA+GGG | 0.549986 | 4_2:-331371 | Msa0582180:CDS |
| GAAAGGCCAGAGAAGGGGTA+AGG | 0.550861 | 4_2:-331365 | Msa0582180:CDS |
| CGTGTTAGTGCCATGGTTCG+AGG | 0.554128 | 4_2:-333460 | Msa0582180:CDS |
| GATTGCTTTGACGGAACTTG+CGG | 0.554644 | 4_2:-333684 | Msa0582180:CDS |
| TTATCAGGACCACTTTCAGA+TGG | 0.555712 | 4_2:+331415 | None:intergenic |
| TCCCTCAGAAGAATGGATCA+TGG | 0.557735 | 4_2:-331263 | Msa0582180:CDS |
| TTGTTTAATGGACTTGTGAA+GGG | 0.557946 | 4_2:-333316 | Msa0582180:CDS |
| CATAACACTGTCAAGTTCGT+CGG | 0.561412 | 4_2:+333415 | None:intergenic |
| ACTTCCACAAAATCTAAGAA+AGG | 0.564114 | 4_2:-331382 | Msa0582180:CDS |
| TGTAGAAGCATTGGAAGGAA+AGG | 0.567169 | 4_2:-330076 | Msa0582180:intron |
| CCAATGTACTCCAGCGCGAA+CGG | 0.567999 | 4_2:+333276 | None:intergenic |
| TTAGCAAATCCATCTGAAAG+TGG | 0.572366 | 4_2:-331424 | Msa0582180:CDS |
| CCAGGACATTTGTGATCGCA+TGG | 0.577916 | 4_2:-331647 | Msa0582180:intron |
| CTAACACGAGCAACATAAGC+AGG | 0.578723 | 4_2:+333475 | None:intergenic |
| AAAGAACGGAGTTGACGTGC+AGG | 0.578778 | 4_2:-330525 | Msa0582180:CDS |
| CAAGAAATGGATGGAGCTAG+TGG | 0.585358 | 4_2:-333370 | Msa0582180:CDS |
| TAGGTGAAAGGAAGGCTGGA+AGG | 0.586646 | 4_2:-333514 | Msa0582180:CDS |
| CTAGCATCTCAATCATTGAT+GGG | 0.589079 | 4_2:+332655 | None:intergenic |
| ATTTGCTAATGTATTTCCAG+TGG | 0.589588 | 4_2:+331438 | None:intergenic |
| TGCAAGAATTGAATGGGCTG+GGG | 0.592851 | 4_2:+332853 | None:intergenic |
| GTCTGCATTCAGAAGCGTGA+CGG | 0.593001 | 4_2:-329842 | Msa0582180:CDS |
| AAGCAGGGTATGATTCAAGC+AGG | 0.595048 | 4_2:-331543 | Msa0582180:CDS |
| TGAAGAAGCATATCAACCAT+AGG | 0.596680 | 4_2:+330654 | None:intergenic |
| TTTGCAAAAGAAACTTGATG+AGG | 0.603716 | 4_2:-330986 | Msa0582180:intron |
| TCTTGAGGTGTAAAAGATGA+GGG | 0.608610 | 4_2:+332432 | None:intergenic |
| GGATCAACTGAGAAATGAGA+TGG | 0.608853 | 4_2:-333912 | Msa0582180:CDS |
| GATGCTAGATGCTGCTACTG+AGG | 0.610729 | 4_2:-332640 | Msa0582180:CDS |
| ATCTTGAGGTGTAAAAGATG+AGG | 0.613240 | 4_2:+332431 | None:intergenic |
| GAGCACAACAAATTAAAGAA+CGG | 0.615383 | 4_2:-330539 | Msa0582180:CDS |
| AGTGATATGGCGAGTGATGG+TGG | 0.615512 | 4_2:-331508 | Msa0582180:CDS |
| AGAATTGATGTTGAATCAAG+GGG | 0.617194 | 4_2:-333777 | Msa0582180:CDS |
| TTGTGAAAAGAATGAATCCA+CGG | 0.617587 | 4_2:+333072 | None:intergenic |
| TTTAATGGACTTGTGAAGGG+AGG | 0.618607 | 4_2:-333313 | Msa0582180:CDS |
| TCCAGTGATATGGCGAGTGA+TGG | 0.621503 | 4_2:-331511 | Msa0582180:CDS |
| TCAGAAGCGTGACGGAAGAG+AGG | 0.622187 | 4_2:-329834 | None:intergenic |
| GTTGGCTCAGAGTATTGTAA+CGG | 0.631287 | 4_2:-333807 | Msa0582180:CDS |
| TTGCCAATGAAGTAAAAGCA+GGG | 0.631451 | 4_2:-331558 | Msa0582180:CDS |
| GTGAAAGGAAGGCTGGAAGG+TGG | 0.632225 | 4_2:-333511 | Msa0582180:CDS |
| GCTGTTGTAGAAGCATTGGA+AGG | 0.633896 | 4_2:-330081 | Msa0582180:CDS |
| TCTAAGAAAGGCCAGAGAAG+GGG | 0.639113 | 4_2:-331370 | Msa0582180:CDS |
| ATGGTTCGAGGTGCTGCAAG+GGG | 0.639892 | 4_2:-333448 | Msa0582180:CDS |
| AATTTACTACAAGAAATGGA+TGG | 0.641774 | 4_2:-333379 | Msa0582180:CDS |
| CTCACTATAGTTCCAAGGCG+TGG | 0.646817 | 4_2:+333617 | None:intergenic |
| AAGATCAATCGATCTCAACA+TGG | 0.659716 | 4_2:-334736 | Msa0582180:exon |
| AGGACCAAACGAAATAGACT+CGG | 0.660752 | 4_2:+330490 | None:intergenic |
| TGTTGCTCAAAAGGAATCCG+TGG | 0.667698 | 4_2:-333089 | Msa0582180:CDS |
| ATTTAGTCCAGATATCCTGA+AGG | 0.672165 | 4_2:-332705 | Msa0582180:intron |
| ACTGAGGATGCTCTAGAACG+TGG | 0.675489 | 4_2:-332624 | Msa0582180:CDS |
| CCAATTGTACAGATTGACAG+AGG | 0.688898 | 4_2:+332391 | None:intergenic |
| TTGCTGAAGAGATTAATGAG+AGG | 0.692613 | 4_2:-333724 | Msa0582180:CDS |
| GAGAAATGAGATGGTTGCTG+AGG | 0.695502 | 4_2:-333903 | Msa0582180:CDS |
| CAATTGTACAGATTGACAGA+GGG | 0.701278 | 4_2:+332392 | None:intergenic |
| TAACAAAGCACACATATTTG+GGG | 0.706670 | 4_2:-332283 | Msa0582180:CDS |
| AATGGATGGAGCTAGTGGTG+TGG | 0.751839 | 4_2:-333365 | Msa0582180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATGAAAACCATAAAATTT+AGG | + | chr4_2:331552-331571 | None:intergenic | 15.0% |
| !! | ATTATTAAATTATATCAGCA+AGG | + | chr4_2:332267-332286 | None:intergenic | 15.0% |
| !! | ATATAATTTAATAATGTTGC+AGG | - | chr4_2:332272-332291 | Msa0582180:CDS | 15.0% |
| !!! | TTTTTTTTTTTGTGTTGGTT+TGG | - | chr4_2:331154-331173 | Msa0582180:intron | 20.0% |
| !!! | AAATTGATGCCTAAATTTTA+TGG | - | chr4_2:331540-331559 | Msa0582180:CDS | 20.0% |
| !!! | ATGTCCTTTTAAACTTATAA+TGG | + | chr4_2:331801-331820 | None:intergenic | 20.0% |
| !! | ATTTCTAAATGATAACCATT+TGG | - | chr4_2:331947-331966 | Msa0582180:intron | 20.0% |
| !! | GAATTAATTCATTTATCTTG+AGG | + | chr4_2:332555-332574 | None:intergenic | 20.0% |
| !!! | GTTAATAAACATGATTTGTA+CGG | - | chr4_2:332651-332670 | Msa0582180:CDS | 20.0% |
| !! | AAGAATAAGAGTTATATACA+TGG | + | chr4_2:333834-333853 | None:intergenic | 20.0% |
| !!! | ATTCAATATTTTATAGAGTG+TGG | - | chr4_2:334873-334892 | Msa0582180:five_prime_UTR | 20.0% |
| !!! | AGATTTTGAAATACGGTTAA+GGG | + | chr4_2:329962-329981 | None:intergenic | 25.0% |
| !!! | TTTTCGTCTTTTTTGTGATT+AGG | - | chr4_2:330223-330242 | Msa0582180:intron | 25.0% |
| !! | TTCTTTTTGCTTAATTACTG+TGG | - | chr4_2:330763-330782 | Msa0582180:intron | 25.0% |
| !!! | GTGAGTTTTTTTTTTTGTGT+TGG | - | chr4_2:331149-331168 | Msa0582180:intron | 25.0% |
| !!! | AACTGTTATTTCATATGTGA+TGG | - | chr4_2:331202-331221 | Msa0582180:intron | 25.0% |
| !!! | TATGTGATGGTTTTGAAAAT+AGG | - | chr4_2:331215-331234 | Msa0582180:intron | 25.0% |
| ! | AATTTACTACAAGAAATGGA+TGG | - | chr4_2:331369-331388 | Msa0582180:CDS | 25.0% |
| !!! | ATGGTTTTCATATTTGAGTT+AGG | - | chr4_2:331559-331578 | Msa0582180:CDS | 25.0% |
| !!! | TGTTTTTTATGTCACATGAT+AGG | - | chr4_2:331629-331648 | Msa0582180:CDS | 25.0% |
| ! | ACTGCCATTATAAGTTTAAA+AGG | - | chr4_2:331794-331813 | Msa0582180:intron | 25.0% |
| ! | ATATCTACATATGATCCAAA+TGG | + | chr4_2:331965-331984 | None:intergenic | 25.0% |
| !! | AGTTGTTGTTAGTTATATGT+TGG | - | chr4_2:332220-332239 | Msa0582180:intron | 25.0% |
| ! | TTTGTTAGACTGCAAAAAAT+GGG | + | chr4_2:332452-332471 | None:intergenic | 25.0% |
| ! | GAGGAAATAAATAATAGGAA+AGG | + | chr4_2:332924-332943 | None:intergenic | 25.0% |
| ! | GTAGTGAGGAAATAAATAAT+AGG | + | chr4_2:332929-332948 | None:intergenic | 25.0% |
| ! | AGAATCACTTAAAATGAAAG+AGG | - | chr4_2:333449-333468 | Msa0582180:CDS | 25.0% |
| ! | ACTTAGATAAAATCATATGC+AGG | + | chr4_2:333581-333600 | None:intergenic | 25.0% |
| ! | AAATTAAGGCCTACAATAAT+CGG | - | chr4_2:333670-333689 | Msa0582180:CDS | 25.0% |
| ! | CAAAAAAACAAATCAACACA+AGG | + | chr4_2:333885-333904 | None:intergenic | 25.0% |
| !!! | CTTGTGTTGATTTGTTTTTT+TGG | - | chr4_2:333883-333902 | Msa0582180:CDS | 25.0% |
| ! | ATCATCTTCAAACAATTCTA+AGG | + | chr4_2:333943-333962 | None:intergenic | 25.0% |
| ! | AGTAAGAATAGTGCATTATT+TGG | - | chr4_2:334485-334504 | Msa0582180:intron | 25.0% |
| !! | GCTTTATGTTCTTATGTTTT+TGG | - | chr4_2:334516-334535 | Msa0582180:intron | 25.0% |
| !! | TCTGAAACAATTCTTTGTTA+AGG | - | chr4_2:334709-334728 | Msa0582180:CDS | 25.0% |
| ! | CTGAAACAATTCTTTGTTAA+GGG | - | chr4_2:334710-334729 | Msa0582180:CDS | 25.0% |
| !! | ACTCTTTGATTGTTTGTTGT+GGG | + | chr4_2:329857-329876 | None:intergenic | 30.0% |
| ! | TACTCTTTGATTGTTTGTTG+TGG | + | chr4_2:329858-329877 | None:intergenic | 30.0% |
| !!! | GAGATTTTGAAATACGGTTA+AGG | + | chr4_2:329963-329982 | None:intergenic | 30.0% |
| !!! | TGCGTTGAGATTTTGAAATA+CGG | + | chr4_2:329969-329988 | None:intergenic | 30.0% |
| CAGAATTGATGTTGAATCAA+GGG | - | chr4_2:330970-330989 | Msa0582180:intron | 30.0% | |
| AGAATTGATGTTGAATCAAG+GGG | - | chr4_2:330971-330990 | Msa0582180:intron | 30.0% | |
| GAATCAAGGGGAAATTATTA+CGG | - | chr4_2:330983-331002 | Msa0582180:intron | 30.0% | |
| AAATTATTACGGAGTCTTAC+TGG | - | chr4_2:330994-331013 | Msa0582180:CDS | 30.0% | |
| AATTATTACGGAGTCTTACT+GGG | - | chr4_2:330995-331014 | Msa0582180:CDS | 30.0% | |
| AAAAACTCACTATAGTTCCA+AGG | + | chr4_2:331139-331158 | None:intergenic | 30.0% | |
| !!! | TGGTTTTGAAAATAGGTGAA+AGG | - | chr4_2:331222-331241 | Msa0582180:intron | 30.0% |
| TTTGAAAATAGGTGAAAGGA+AGG | - | chr4_2:331226-331245 | Msa0582180:CDS | 30.0% | |
| GCAGAATTTACTACAAGAAA+TGG | - | chr4_2:331365-331384 | Msa0582180:CDS | 30.0% | |
| ! | TTCTTCCAGTCTTTGTTTAA+TGG | - | chr4_2:331420-331439 | Msa0582180:CDS | 30.0% |
| !! | TTTGTTTAATGGACTTGTGA+AGG | - | chr4_2:331431-331450 | Msa0582180:CDS | 30.0% |
| !! | TTGTTTAATGGACTTGTGAA+GGG | - | chr4_2:331432-331451 | Msa0582180:CDS | 30.0% |
| TTGTGAAAAGAATGAATCCA+CGG | + | chr4_2:331679-331698 | None:intergenic | 30.0% | |
| TAAGCAAAAGTGAAAGACAA+GGG | + | chr4_2:331718-331737 | None:intergenic | 30.0% | |
| TTAAGCAAAAGTGAAAGACA+AGG | + | chr4_2:331719-331738 | None:intergenic | 30.0% | |
| ! | AATTCTTTTATCAGCTACGA+CGG | - | chr4_2:331853-331872 | Msa0582180:intron | 30.0% |
| AAATTGGATTGTGCAAACTT+AGG | + | chr4_2:332027-332046 | None:intergenic | 30.0% | |
| TGAACAAATGTTGTAACAAG+AGG | + | chr4_2:332073-332092 | None:intergenic | 30.0% | |
| ! | AACATTTTAGATGCATCTTG+AGG | + | chr4_2:332334-332353 | None:intergenic | 30.0% |
| CTTTGTTAGACTGCAAAAAA+TGG | + | chr4_2:332453-332472 | None:intergenic | 30.0% | |
| TCTAACAAAGCACACATATT+TGG | - | chr4_2:332463-332482 | Msa0582180:intron | 30.0% | |
| CTAACAAAGCACACATATTT+GGG | - | chr4_2:332464-332483 | Msa0582180:intron | 30.0% | |
| TAACAAAGCACACATATTTG+GGG | - | chr4_2:332465-332484 | Msa0582180:intron | 30.0% | |
| CATTTATCTTGAGGTCTATA+TGG | + | chr4_2:332546-332565 | None:intergenic | 30.0% | |
| !!! | AAGCCATATTACTGATTTTG+TGG | - | chr4_2:332578-332597 | Msa0582180:intron | 30.0% |
| AAGATAAAGAAACCAAAAGC+TGG | + | chr4_2:332954-332973 | None:intergenic | 30.0% | |
| ATGGTAAAAAGAATAGTTGC+AGG | + | chr4_2:333041-333060 | None:intergenic | 30.0% | |
| ! | GCAACTATTCTTTTTACCAT+TGG | - | chr4_2:333041-333060 | Msa0582180:intron | 30.0% |
| ! | ATTTGCTAATGTATTTCCAG+TGG | + | chr4_2:333313-333332 | None:intergenic | 30.0% |
| !! | ATTTTGTGGAAGTATGTTCT+TGG | + | chr4_2:333359-333378 | None:intergenic | 30.0% |
| ACTTCCACAAAATCTAAGAA+AGG | - | chr4_2:333366-333385 | Msa0582180:CDS | 30.0% | |
| !! | ATTCCTGATTTTGAAGAACA+AGG | - | chr4_2:333525-333544 | Msa0582180:intron | 30.0% |
| TTTGCAAAAGAAACTTGATG+AGG | - | chr4_2:333762-333781 | Msa0582180:CDS | 30.0% | |
| AGTTATATACATGGACACAA+CGG | + | chr4_2:333825-333844 | None:intergenic | 30.0% | |
| ! | GTTCAGATGAGTATCTTTTA+AGG | + | chr4_2:333858-333877 | None:intergenic | 30.0% |
| ! | TTTTGCATAGGCATTTACTA+AGG | - | chr4_2:334059-334078 | Msa0582180:intron | 30.0% |
| GTAAAGGTCTAAAAACGATA+TGG | - | chr4_2:334168-334187 | Msa0582180:intron | 30.0% | |
| GAGCACAACAAATTAAAGAA+CGG | - | chr4_2:334209-334228 | Msa0582180:intron | 30.0% | |
| ATTAAACTTCGTTGCATCAT+AGG | + | chr4_2:334423-334442 | None:intergenic | 30.0% | |
| ! | GTTTAATGCTACTTAGAATG+TGG | - | chr4_2:334436-334455 | Msa0582180:intron | 30.0% |
| TAATGCACTATTCTTACTGT+TGG | + | chr4_2:334483-334502 | None:intergenic | 30.0% | |
| ATGGTTAAGGCTTATTGTAT+AGG | - | chr4_2:334744-334763 | Msa0582180:five_prime_UTR | 30.0% | |
| !! | TGATCTTCCGTTTTTCTTAG+CGG | + | chr4_2:329906-329925 | None:intergenic | 35.0% |
| AAGATCAATCGATCTCAACA+TGG | - | chr4_2:330012-330031 | Msa0582180:intron | 35.0% | |
| TAATTCAACGACGTTTCGAT+CGG | + | chr4_2:330107-330126 | None:intergenic | 35.0% | |
| AGAAATTAGGGCGAACTTAA+TGG | - | chr4_2:330416-330435 | Msa0582180:intron | 35.0% | |
| TTAAGTGCTTGTTTACACGA+TGG | - | chr4_2:330497-330516 | Msa0582180:CDS | 35.0% | |
| !! | ACACGATGGATTATACTGTT+AGG | - | chr4_2:330511-330530 | Msa0582180:CDS | 35.0% |
| ACATCCTAATTTCTTCACCT+CGG | + | chr4_2:330553-330572 | None:intergenic | 35.0% | |
| ! | ATGTGATTGATTGTGCTGTT+AGG | - | chr4_2:330815-330834 | Msa0582180:CDS | 35.0% |
| CTTGTACTATGTTGAGAAGT+TGG | - | chr4_2:330923-330942 | Msa0582180:intron | 35.0% | |
| GCAGAATTGATGTTGAATCA+AGG | - | chr4_2:330969-330988 | Msa0582180:intron | 35.0% | |
| CTCATTAATCTCTTCAGCAA+TGG | + | chr4_2:331024-331043 | None:intergenic | 35.0% | |
| TTGCTGAAGAGATTAATGAG+AGG | - | chr4_2:331024-331043 | Msa0582180:CDS | 35.0% | |
| ATGTAGTCAGATTGCTTTGA+CGG | - | chr4_2:331055-331074 | Msa0582180:CDS | 35.0% | |
| ! | GGATTTGATTGCGTCTATTT+TGG | - | chr4_2:331106-331125 | Msa0582180:CDS | 35.0% |
| !!! | TGTTGGTTTGGATGTGTTTT+TGG | - | chr4_2:331166-331185 | Msa0582180:intron | 35.0% |
| CAAGTCCATTAAACAAAGAC+TGG | + | chr4_2:331428-331447 | None:intergenic | 35.0% | |
| ! | TCATATTTGAGTTAGGCCTT+TGG | - | chr4_2:331566-331585 | Msa0582180:CDS | 35.0% |
| GTTGATCATAAGCTAGAACT+AGG | + | chr4_2:331758-331777 | None:intergenic | 35.0% | |
| GTTACCTGCAAGAATTGAAT+GGG | + | chr4_2:331904-331923 | None:intergenic | 35.0% | |
| AGTTACCTGCAAGAATTGAA+TGG | + | chr4_2:331905-331924 | None:intergenic | 35.0% | |
| TCAGGATATCTGGACTAAAT+TGG | + | chr4_2:332043-332062 | None:intergenic | 35.0% | |
| ATTTAGTCCAGATATCCTGA+AGG | - | chr4_2:332043-332062 | Msa0582180:intron | 35.0% | |
| CTAGCATCTCAATCATTGAT+GGG | + | chr4_2:332096-332115 | None:intergenic | 35.0% | |
| TCTAGCATCTCAATCATTGA+TGG | + | chr4_2:332097-332116 | None:intergenic | 35.0% | |
| TGTAAAAGATGAGGGCAATA+AGG | + | chr4_2:332311-332330 | None:intergenic | 35.0% | |
| TCTTGAGGTGTAAAAGATGA+GGG | + | chr4_2:332319-332338 | None:intergenic | 35.0% | |
| ATCTTGAGGTGTAAAAGATG+AGG | + | chr4_2:332320-332339 | None:intergenic | 35.0% | |
| CAATTGTACAGATTGACAGA+GGG | + | chr4_2:332359-332378 | None:intergenic | 35.0% | |
| ATCTGTACAATTGGCACTTA+AGG | - | chr4_2:332366-332385 | Msa0582180:intron | 35.0% | |
| GTGCGAAGCATAAATTAATG+AGG | + | chr4_2:332404-332423 | None:intergenic | 35.0% | |
| GCACCACAAAATCAGTAATA+TGG | + | chr4_2:332584-332603 | None:intergenic | 35.0% | |
| !!! | TACTGATTTTGTGGTGCAAA+TGG | - | chr4_2:332587-332606 | Msa0582180:intron | 35.0% |
| AGTACATCAAATTACTGCCA+TGG | - | chr4_2:332757-332776 | Msa0582180:intron | 35.0% | |
| ! | TTGAGTTGTCAATGTAGCTA+TGG | + | chr4_2:332799-332818 | None:intergenic | 35.0% |
| GGATGCATGCATATTAATGA+AGG | + | chr4_2:332885-332904 | None:intergenic | 35.0% | |
| GTAACTTAATTCTTGGCAGT+TGG | + | chr4_2:332998-333017 | None:intergenic | 35.0% | |
| CCAAGAATTAAGTTACCGTT+GGG | - | chr4_2:333002-333021 | Msa0582180:intron | 35.0% | |
| !!! | GGTAGACATTTTTTACCCAA+CGG | + | chr4_2:333020-333039 | None:intergenic | 35.0% |
| TACATGCATTAGGAAACCAA+TGG | + | chr4_2:333060-333079 | None:intergenic | 35.0% | |
| TTGGTTTCCTAATGCATGTA+TGG | - | chr4_2:333060-333079 | Msa0582180:intron | 35.0% | |
| ! | TAGAGACATTAGCTGTTTCA+AGG | - | chr4_2:333133-333152 | Msa0582180:intron | 35.0% |
| ! | TTAGCTGTTTCAAGGTCTTT+AGG | - | chr4_2:333141-333160 | Msa0582180:intron | 35.0% |
| ! | GCTTTTACTTCATTGGCAAT+TGG | + | chr4_2:333189-333208 | None:intergenic | 35.0% |
| ATTGCCAATGAAGTAAAAGC+AGG | - | chr4_2:333189-333208 | Msa0582180:intron | 35.0% | |
| TTGCCAATGAAGTAAAAGCA+GGG | - | chr4_2:333190-333209 | Msa0582180:intron | 35.0% | |
| !! | ATACCCTGCTTTTACTTCAT+TGG | + | chr4_2:333196-333215 | None:intergenic | 35.0% |
| TCAAACAAGCATGCTGATAA+AGG | - | chr4_2:333264-333283 | Msa0582180:intron | 35.0% | |
| CAAACAAGCATGCTGATAAA+GGG | - | chr4_2:333265-333284 | Msa0582180:intron | 35.0% | |
| TAAAGGGCCAAAGAAGAAAA+AGG | - | chr4_2:333281-333300 | Msa0582180:CDS | 35.0% | |
| AAAGGGCCAAAGAAGAAAAA+GGG | - | chr4_2:333282-333301 | Msa0582180:CDS | 35.0% | |
| TTAGCAAATCCATCTGAAAG+TGG | - | chr4_2:333324-333343 | Msa0582180:CDS | 35.0% | |
| GAAGTATGTTCTTGGTTATC+AGG | + | chr4_2:333351-333370 | None:intergenic | 35.0% | |
| AGACCTTGTTCTTCAAAATC+AGG | + | chr4_2:333531-333550 | None:intergenic | 35.0% | |
| ACTGTGTGCTATAAATTGAC+AGG | - | chr4_2:333607-333626 | Msa0582180:intron | 35.0% | |
| !! | ATCCAAGTACCGATTATTGT+AGG | + | chr4_2:333682-333701 | None:intergenic | 35.0% |
| TACAATAATCGGTACTTGGA+TGG | - | chr4_2:333681-333700 | Msa0582180:CDS | 35.0% | |
| TACTTGGATGGAGAAAAAGA+AGG | - | chr4_2:333693-333712 | Msa0582180:CDS | 35.0% | |
| !! | TTAATGTGTTTTTGATGCCC+AGG | - | chr4_2:334033-334052 | Msa0582180:intron | 35.0% |
| ! | TGAAGAAGCATATCAACCAT+AGG | + | chr4_2:334097-334116 | None:intergenic | 35.0% |
| TGATATGCTTCTTCATGACT+TGG | - | chr4_2:334102-334121 | Msa0582180:intron | 35.0% | |
| ! | TTTTCTGTTGATGTTTCTCG+AGG | - | chr4_2:334141-334160 | Msa0582180:intron | 35.0% |
| TGTTTCTCGAGGTTTAGTAA+AGG | - | chr4_2:334152-334171 | Msa0582180:intron | 35.0% | |
| ATAGACTGCAAATATGAGAC+TGG | + | chr4_2:334558-334577 | None:intergenic | 35.0% | |
| GATATTTCAACTCAACCAGT+TGG | + | chr4_2:334789-334808 | None:intergenic | 35.0% | |
| TACAGCATTCAAGAGTCAAA+CGG | + | chr4_2:334838-334857 | None:intergenic | 35.0% | |
| !! | TGTTTGTTGTGGGACGAAAT+TGG | + | chr4_2:329847-329866 | None:intergenic | 40.0% |
| AAACGCACCGCTAAGAAAAA+CGG | - | chr4_2:329896-329915 | Msa0582180:intron | 40.0% | |
| TCGATCGGATAATCGAATAC+TGG | + | chr4_2:330092-330111 | None:intergenic | 40.0% | |
| ACGCGATCATGAATATTGCT+AGG | - | chr4_2:330360-330379 | Msa0582180:intron | 40.0% | |
| GAGAAATGAAATTGTGACCG+AGG | - | chr4_2:330390-330409 | Msa0582180:intron | 40.0% | |
| TGACCGAGGTGAAGAAATTA+GGG | - | chr4_2:330404-330423 | Msa0582180:intron | 40.0% | |
| GGATCAACTGAGAAATGAGA+TGG | - | chr4_2:330836-330855 | Msa0582180:CDS | 40.0% | |
| TTGCTGAGGTGAAGAAGTTA+GGG | - | chr4_2:330859-330878 | Msa0582180:intron | 40.0% | |
| ATCGATCTTGCTGATGTTAC+TGG | - | chr4_2:330894-330913 | Msa0582180:intron | 40.0% | |
| !! | GTTGGCTCAGAGTATTGTAA+CGG | - | chr4_2:330941-330960 | Msa0582180:intron | 40.0% |
| AAAATAGGTGAAAGGAAGGC+TGG | - | chr4_2:331230-331249 | Msa0582180:CDS | 40.0% | |
| CATAACACTGTCAAGTTCGT+CGG | + | chr4_2:331336-331355 | None:intergenic | 40.0% | |
| !! | TTTAATGGACTTGTGAAGGG+AGG | - | chr4_2:331435-331454 | Msa0582180:CDS | 40.0% |
| TATGAAGTAAGCCACTCCAA+AGG | + | chr4_2:331585-331604 | None:intergenic | 40.0% | |
| !! | GGTATTTGCTGTTGCTCAAA+AGG | - | chr4_2:331650-331669 | Msa0582180:intron | 40.0% |
| CTAGAACTAGGCGAAATGTT+TGG | + | chr4_2:331746-331765 | None:intergenic | 40.0% | |
| ! | ATGATCAACTGCTTTGAGCT+CGG | - | chr4_2:331769-331788 | Msa0582180:intron | 40.0% |
| CCAATTGTACAGATTGACAG+AGG | + | chr4_2:332360-332379 | None:intergenic | 40.0% | |
| CCTCTGTCAATCTGTACAAT+TGG | - | chr4_2:332357-332376 | Msa0582180:intron | 40.0% | |
| !! | GAATGCTTAGTTGATGACCA+TGG | + | chr4_2:332777-332796 | None:intergenic | 40.0% |
| TTAATATGCATGCATCCTGC+TGG | - | chr4_2:332888-332907 | Msa0582180:CDS | 40.0% | |
| TAATATGCATGCATCCTGCT+GGG | - | chr4_2:332889-332908 | Msa0582180:CDS | 40.0% | |
| GCCAAGAATTAAGTTACCGT+TGG | - | chr4_2:333001-333020 | Msa0582180:intron | 40.0% | |
| CCCAACGGTAACTTAATTCT+TGG | + | chr4_2:333005-333024 | None:intergenic | 40.0% | |
| CAGAGAACCATACATGCATT+AGG | + | chr4_2:333070-333089 | None:intergenic | 40.0% | |
| TCACAAATGTCCTGGTAGAA+GGG | + | chr4_2:333096-333115 | None:intergenic | 40.0% | |
| ATCACAAATGTCCTGGTAGA+AGG | + | chr4_2:333097-333116 | None:intergenic | 40.0% | |
| TTGGCAATTGGTAAATCACC+AGG | + | chr4_2:333177-333196 | None:intergenic | 40.0% | |
| AAGGGCCAAAGAAGAAAAAG+GGG | - | chr4_2:333283-333302 | Msa0582180:CDS | 40.0% | |
| ! | GCTTTCCCCTTTTTCTTCTT+TGG | + | chr4_2:333291-333310 | None:intergenic | 40.0% |
| TTATCAGGACCACTTTCAGA+TGG | + | chr4_2:333336-333355 | None:intergenic | 40.0% | |
| !! | CTGGCCTTTCTTAGATTTTG+TGG | + | chr4_2:333373-333392 | None:intergenic | 40.0% |
| AATCTAAGAAAGGCCAGAGA+AGG | - | chr4_2:333376-333395 | Msa0582180:CDS | 40.0% | |
| ATCTAAGAAAGGCCAGAGAA+GGG | - | chr4_2:333377-333396 | Msa0582180:CDS | 40.0% | |
| CAAACATCAGATTCAAAGCC+AGG | - | chr4_2:333417-333436 | Msa0582180:CDS | 40.0% | |
| AGTGATTCTTTCCTAGAACC+TGG | + | chr4_2:333438-333457 | None:intergenic | 40.0% | |
| TCAGTAATCCCTCAGAAGAA+TGG | - | chr4_2:333478-333497 | Msa0582180:CDS | 40.0% | |
| TCCATGATCCATTCTTCTGA+GGG | + | chr4_2:333489-333508 | None:intergenic | 40.0% | |
| AGGTCTGCTATGAATGACTT+TGG | - | chr4_2:333545-333564 | Msa0582180:intron | 40.0% | |
| GGTCTGCTATGAATGACTTT+GGG | - | chr4_2:333546-333565 | Msa0582180:intron | 40.0% | |
| ATGATCCCGAAACGATTCTT+AGG | - | chr4_2:333635-333654 | Msa0582180:CDS | 40.0% | |
| AAAGGCCTAAGAATCGTTTC+GGG | + | chr4_2:333643-333662 | None:intergenic | 40.0% | |
| CAAAGGCCTAAGAATCGTTT+CGG | + | chr4_2:333644-333663 | None:intergenic | 40.0% | |
| GGCCTTTGGCTAACAAATTA+AGG | - | chr4_2:333656-333675 | Msa0582180:CDS | 40.0% | |
| !! | GGCCTTAATTTGTTAGCCAA+AGG | + | chr4_2:333661-333680 | None:intergenic | 40.0% |
| ATGCCTATGCAAAACAACCT+GGG | + | chr4_2:334053-334072 | None:intergenic | 40.0% | |
| AATGCCTATGCAAAACAACC+TGG | + | chr4_2:334054-334073 | None:intergenic | 40.0% | |
| GATATGGATTCAACCTTTGC+AGG | - | chr4_2:334184-334203 | Msa0582180:intron | 40.0% | |
| AACGAAATAGACTCGGACTT+TGG | + | chr4_2:334254-334273 | None:intergenic | 40.0% | |
| AAGTCCGAGTCTATTTCGTT+TGG | - | chr4_2:334254-334273 | Msa0582180:intron | 40.0% | |
| AGGACCAAACGAAATAGACT+CGG | + | chr4_2:334261-334280 | None:intergenic | 40.0% | |
| CTGCAATTGTAAGACTTGAG+AGG | - | chr4_2:334291-334310 | Msa0582180:intron | 40.0% | |
| !! | GCAAATATGAGACTGGTCTA+TGG | + | chr4_2:334551-334570 | None:intergenic | 40.0% |
| !! | TCTTGCTGTTGTAGAAGCAT+TGG | - | chr4_2:334663-334682 | Msa0582180:CDS | 40.0% |
| !! | TGTAGAAGCATTGGAAGGAA+AGG | - | chr4_2:334672-334691 | Msa0582180:CDS | 40.0% |
| GTTAAGGGTTGCTCAGATTA+TGG | - | chr4_2:334725-334744 | Msa0582180:exon | 40.0% | |
| GGTTGCTCAGATTATGGTTA+AGG | - | chr4_2:334731-334750 | Msa0582180:exon | 40.0% | |
| ACTCAATTCACCATTCCAAC+TGG | - | chr4_2:334771-334790 | Msa0582180:five_prime_UTR | 40.0% | |
| TTCAACTCAACCAGTTGGAA+TGG | + | chr4_2:334784-334803 | None:intergenic | 40.0% | |
| GAGCTTCTTCATACTGCTTC+TGG | - | chr4_2:330163-330182 | Msa0582180:intron | 45.0% | |
| GTGACCGAGGTGAAGAAATT+AGG | - | chr4_2:330403-330422 | Msa0582180:intron | 45.0% | |
| TCGCCCTAATTTCTTCACCT+CGG | + | chr4_2:330410-330429 | None:intergenic | 45.0% | |
| GATCAACTGAAATGTTGCCG+AGG | - | chr4_2:330533-330552 | Msa0582180:CDS | 45.0% | |
| GTTGCCGAGGTGAAGAAATT+AGG | - | chr4_2:330546-330565 | Msa0582180:intron | 45.0% | |
| GAGAAATGAGATGGTTGCTG+AGG | - | chr4_2:330845-330864 | Msa0582180:intron | 45.0% | |
| GTTGCTGAGGTGAAGAAGTT+AGG | - | chr4_2:330858-330877 | Msa0582180:intron | 45.0% | |
| GATTGCTTTGACGGAACTTG+CGG | - | chr4_2:331064-331083 | Msa0582180:CDS | 45.0% | |
| CTAACACGAGCAACATAAGC+AGG | + | chr4_2:331276-331295 | None:intergenic | 45.0% | |
| CGACGAACTTGACAGTGTTA+TGG | - | chr4_2:331334-331353 | Msa0582180:CDS | 45.0% | |
| CAAGAAATGGATGGAGCTAG+TGG | - | chr4_2:331378-331397 | Msa0582180:CDS | 45.0% | |
| ! | TGAAGGGAGGCGAGATTTTA+GGG | - | chr4_2:331448-331467 | Msa0582180:CDS | 45.0% |
| CAGCTGTGAGTGACATGATA+CGG | - | chr4_2:331499-331518 | Msa0582180:CDS | 45.0% | |
| ! | TTTGAGTTAGGCCTTTGGAG+TGG | - | chr4_2:331571-331590 | Msa0582180:CDS | 45.0% |
| TGTTGCTCAAAAGGAATCCG+TGG | - | chr4_2:331659-331678 | Msa0582180:intron | 45.0% | |
| TACGACGGTCTGCAAAAACT+TGG | - | chr4_2:331868-331887 | Msa0582180:intron | 45.0% | |
| !! | TGCAAGAATTGAATGGGCTG+GGG | + | chr4_2:331898-331917 | None:intergenic | 45.0% |
| ! | CTGCAAGAATTGAATGGGCT+GGG | + | chr4_2:331899-331918 | None:intergenic | 45.0% |
| AGGTTTGCCTTCAGGATATC+TGG | + | chr4_2:332053-332072 | None:intergenic | 45.0% | |
| GTAACAAGAGGTTTGCCTTC+AGG | + | chr4_2:332061-332080 | None:intergenic | 45.0% | |
| TAGAACGTGGAAGCTGGTAA+GGG | - | chr4_2:332137-332156 | Msa0582180:intron | 45.0% | |
| AGATCCCTTGCACAGCATTA+GGG | + | chr4_2:332182-332201 | None:intergenic | 45.0% | |
| !! | TGGTGCAAATGGTGCTACTA+AGG | - | chr4_2:332598-332617 | Msa0582180:intron | 45.0% |
| !! | CAAATGGTGCTACTAAGGCT+CGG | - | chr4_2:332603-332622 | Msa0582180:intron | 45.0% |
| AATATGCATGCATCCTGCTG+GGG | - | chr4_2:332890-332909 | Msa0582180:CDS | 45.0% | |
| AAAGGAAGATAAACCCCAGC+AGG | + | chr4_2:332906-332925 | None:intergenic | 45.0% | |
| ! | TCCTCACTACATCCAGCTTT+TGG | - | chr4_2:332939-332958 | Msa0582180:intron | 45.0% |
| ACCAAAAGCTGGATGTAGTG+AGG | + | chr4_2:332943-332962 | None:intergenic | 45.0% | |
| ACAAATGTCCTGGTAGAAGG+GGG | + | chr4_2:333094-333113 | None:intergenic | 45.0% | |
| CACAAATGTCCTGGTAGAAG+GGG | + | chr4_2:333095-333114 | None:intergenic | 45.0% | |
| ! | TCTTTAGGCACTGCAAAACC+TGG | - | chr4_2:333156-333175 | Msa0582180:intron | 45.0% |
| AAGCAGGGTATGATTCAAGC+AGG | - | chr4_2:333205-333224 | Msa0582180:intron | 45.0% | |
| GTTGAGTGAGTCCAGTGATA+TGG | - | chr4_2:333227-333246 | Msa0582180:intron | 45.0% | |
| AAGAAAAAGGGGAAAGCCAC+TGG | - | chr4_2:333294-333313 | Msa0582180:CDS | 45.0% | |
| TCTAAGAAAGGCCAGAGAAG+GGG | - | chr4_2:333378-333397 | Msa0582180:CDS | 45.0% | |
| ATGTATCCTTACCCCTTCTC+TGG | + | chr4_2:333392-333411 | None:intergenic | 45.0% | |
| CAGATTCAAAGCCAGGTTCT+AGG | - | chr4_2:333424-333443 | Msa0582180:CDS | 45.0% | |
| TCCCTCAGAAGAATGGATCA+TGG | - | chr4_2:333485-333504 | Msa0582180:CDS | 45.0% | |
| CTCCATGATCCATTCTTCTG+AGG | + | chr4_2:333490-333509 | None:intergenic | 45.0% | |
| CGAAACGATTCTTAGGCCTT+TGG | - | chr4_2:333642-333661 | Msa0582180:CDS | 45.0% | |
| GGCCTACAATAATCGGTACT+TGG | - | chr4_2:333677-333696 | Msa0582180:CDS | 45.0% | |
| !! | ATGCCCAGGTTGTTTTGCAT+AGG | - | chr4_2:334047-334066 | Msa0582180:intron | 45.0% |
| TTGTTGTGCTCATCCTGCAA+AGG | + | chr4_2:334200-334219 | None:intergenic | 45.0% | |
| GAGTCTATTTCGTTTGGTCC+TGG | - | chr4_2:334260-334279 | Msa0582180:intron | 45.0% | |
| ACAATTGCAGCTCTTTCTCC+AGG | + | chr4_2:334281-334300 | None:intergenic | 45.0% | |
| !! | AAGAGCTCTGGGAAAACTCT+TGG | + | chr4_2:334632-334651 | None:intergenic | 45.0% |
| TCCCAGAGCTCTTGCAAATA+AGG | - | chr4_2:334639-334658 | Msa0582180:CDS | 45.0% | |
| !! | GCCTTATTTGCAAGAGCTCT+GGG | + | chr4_2:334643-334662 | None:intergenic | 45.0% |
| !! | AGCCTTATTTGCAAGAGCTC+TGG | + | chr4_2:334644-334663 | None:intergenic | 45.0% |
| !! | GCTGTTGTAGAAGCATTGGA+AGG | - | chr4_2:334667-334686 | Msa0582180:CDS | 45.0% |
| ! | GGCGCAGTTGAATGTTGGTT+TGG | - | chr4_2:331085-331104 | Msa0582180:CDS | 50.0% |
| !!! | TCTATTTTGGAGCCACGCCT+TGG | - | chr4_2:331119-331138 | Msa0582180:CDS | 50.0% |
| CTCACTATAGTTCCAAGGCG+TGG | + | chr4_2:331134-331153 | None:intergenic | 50.0% | |
| TAGGTGAAAGGAAGGCTGGA+AGG | - | chr4_2:331234-331253 | Msa0582180:CDS | 50.0% | |
| TGTTGCTCGTGTTAGTGCCA+TGG | - | chr4_2:331281-331300 | Msa0582180:CDS | 50.0% | |
| !! | AGGTGCTGCAAGGGGTATTA+CGG | - | chr4_2:331308-331327 | Msa0582180:CDS | 50.0% |
| AATGGATGGAGCTAGTGGTG+TGG | - | chr4_2:331383-331402 | Msa0582180:CDS | 50.0% | |
| ! | GTGAAGGGAGGCGAGATTTT+AGG | - | chr4_2:331447-331466 | Msa0582180:CDS | 50.0% |
| CGTATCATGTCACTCACAGC+TGG | + | chr4_2:331501-331520 | None:intergenic | 50.0% | |
| CCTGCAAGAATTGAATGGGC+TGG | + | chr4_2:331900-331919 | None:intergenic | 50.0% | |
| CCAGCCCATTCAATTCTTGC+AGG | - | chr4_2:331897-331916 | Msa0582180:intron | 50.0% | |
| GATGCTAGATGCTGCTACTG+AGG | - | chr4_2:332108-332127 | Msa0582180:intron | 50.0% | |
| !! | ACTGAGGATGCTCTAGAACG+TGG | - | chr4_2:332124-332143 | Msa0582180:intron | 50.0% |
| !! | ATGCTCTAGAACGTGGAAGC+TGG | - | chr4_2:332131-332150 | Msa0582180:intron | 50.0% |
| CTAGAACGTGGAAGCTGGTA+AGG | - | chr4_2:332136-332155 | Msa0582180:intron | 50.0% | |
| ATCCCTTGCACAGCATTAGG+GGG | + | chr4_2:332180-332199 | None:intergenic | 50.0% | |
| GATCCCTTGCACAGCATTAG+GGG | + | chr4_2:332181-332200 | None:intergenic | 50.0% | |
| GAGATCCCTTGCACAGCATT+AGG | + | chr4_2:332183-332202 | None:intergenic | 50.0% | |
| ! | GCTGAGCAGCAGCTTTATGA+AGG | - | chr4_2:332498-332517 | Msa0582180:intron | 50.0% |
| CAAATGTCCTGGTAGAAGGG+GGG | + | chr4_2:333093-333112 | None:intergenic | 50.0% | |
| CCATGCGATCACAAATGTCC+TGG | + | chr4_2:333104-333123 | None:intergenic | 50.0% | |
| CCAGGACATTTGTGATCGCA+TGG | - | chr4_2:333101-333120 | Msa0582180:intron | 50.0% | |
| TCCAGTGATATGGCGAGTGA+TGG | - | chr4_2:333237-333256 | Msa0582180:intron | 50.0% | |
| ACCATCACTCGCCATATCAC+TGG | + | chr4_2:333241-333260 | None:intergenic | 50.0% | |
| AGTGATATGGCGAGTGATGG+TGG | - | chr4_2:333240-333259 | Msa0582180:intron | 50.0% | |
| AAGGACAGTAGCAGCTCCTA+TGG | - | chr4_2:334078-334097 | Msa0582180:intron | 50.0% | |
| AAAGAACGGAGTTGACGTGC+AGG | - | chr4_2:334223-334242 | Msa0582180:intron | 50.0% | |
| ! | GTCTGCATTCAGAAGCGTGA+CGG | - | chr4_2:334906-334925 | Msa0582180:five_prime_UTR | 50.0% |
| CTTGCGGCGCAGTTGAATGT+TGG | - | chr4_2:331080-331099 | Msa0582180:CDS | 55.0% | |
| GTGAAAGGAAGGCTGGAAGG+TGG | - | chr4_2:331237-331256 | Msa0582180:CDS | 55.0% | |
| CGTGTTAGTGCCATGGTTCG+AGG | - | chr4_2:331288-331307 | Msa0582180:CDS | 55.0% | |
| !! | CATGGTTCGAGGTGCTGCAA+GGG | - | chr4_2:331299-331318 | Msa0582180:CDS | 55.0% |
| !! | ATGGTTCGAGGTGCTGCAAG+GGG | - | chr4_2:331300-331319 | Msa0582180:CDS | 55.0% |
| GCTAGTGGTGTGGCTGTTGA+TGG | - | chr4_2:331393-331412 | Msa0582180:CDS | 55.0% | |
| !!! | ATTTTAGGGTCCGTTCGCGC+TGG | - | chr4_2:331462-331481 | Msa0582180:CDS | 55.0% |
| CCAATGTACTCCAGCGCGAA+CGG | + | chr4_2:331475-331494 | None:intergenic | 55.0% | |
| TTGCACAGCATTAGGGGGTG+GGG | + | chr4_2:332175-332194 | None:intergenic | 55.0% | |
| CTTGCACAGCATTAGGGGGT+GGG | + | chr4_2:332176-332195 | None:intergenic | 55.0% | |
| CACCCCCTAATGCTGTGCAA+GGG | - | chr4_2:332175-332194 | Msa0582180:intron | 55.0% | |
| GAAAGGCCAGAGAAGGGGTA+AGG | - | chr4_2:333383-333402 | Msa0582180:CDS | 55.0% | |
| CCTTGCAGCACCTCGAACCA+TGG | + | chr4_2:331301-331320 | None:intergenic | 60.0% | |
| !! | CCATGGTTCGAGGTGCTGCA+AGG | - | chr4_2:331298-331317 | Msa0582180:CDS | 60.0% |
| CCGTTCGCGCTGGAGTACAT+TGG | - | chr4_2:331472-331491 | Msa0582180:CDS | 60.0% | |
| TGCACAGCATTAGGGGGTGG+GGG | + | chr4_2:332174-332193 | None:intergenic | 60.0% | |
| CCTTGCACAGCATTAGGGGG+TGG | + | chr4_2:332177-332196 | None:intergenic | 60.0% | |
| CCACCCCCTAATGCTGTGCA+AGG | - | chr4_2:332174-332193 | Msa0582180:intron | 60.0% | |
| TTCTCTGCCCCCCTTCTACC+AGG | - | chr4_2:333083-333102 | Msa0582180:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 329837 | 334933 | 329837 | ID=Msa0582180;Name=Msa0582180 |
| chr4_2 | mRNA | 329837 | 334933 | 329837 | ID=Msa0582180-mRNA-1;Parent=Msa0582180;Name=Msa0582180-mRNA-1;_AED=0.08;_eAED=0.08;_QI=194|1|0.93|1|1|0.93|15|0|686 |
| chr4_2 | exon | 329837 | 329881 | 329837 | ID=Msa0582180-mRNA-1:exon:86;Parent=Msa0582180-mRNA-1 |
| chr4_2 | exon | 330077 | 330142 | 330077 | ID=Msa0582180-mRNA-1:exon:85;Parent=Msa0582180-mRNA-1 |
| chr4_2 | exon | 330472 | 330564 | 330472 | ID=Msa0582180-mRNA-1:exon:84;Parent=Msa0582180-mRNA-1 |
| chr4_2 | exon | 330647 | 330715 | 330647 | ID=Msa0582180-mRNA-1:exon:83;Parent=Msa0582180-mRNA-1 |
| chr4_2 | exon | 330796 | 330861 | 330796 | ID=Msa0582180-mRNA-1:exon:82;Parent=Msa0582180-mRNA-1 |
| chr4_2 | exon | 330987 | 331141 | 330987 | ID=Msa0582180-mRNA-1:exon:81;Parent=Msa0582180-mRNA-1 |
| chr4_2 | exon | 331224 | 331665 | 331224 | ID=Msa0582180-mRNA-1:exon:80;Parent=Msa0582180-mRNA-1 |
| chr4_2 | exon | 332251 | 332307 | 332251 | ID=Msa0582180-mRNA-1:exon:79;Parent=Msa0582180-mRNA-1 |
| chr4_2 | exon | 332383 | 332476 | 332383 | ID=Msa0582180-mRNA-1:exon:78;Parent=Msa0582180-mRNA-1 |
| chr4_2 | exon | 332618 | 332721 | 332618 | ID=Msa0582180-mRNA-1:exon:77;Parent=Msa0582180-mRNA-1 |
| chr4_2 | exon | 332852 | 332917 | 332852 | ID=Msa0582180-mRNA-1:exon:76;Parent=Msa0582180-mRNA-1 |
| chr4_2 | exon | 333072 | 333119 | 333072 | ID=Msa0582180-mRNA-1:exon:75;Parent=Msa0582180-mRNA-1 |
| chr4_2 | exon | 333267 | 333533 | 333267 | ID=Msa0582180-mRNA-1:exon:74;Parent=Msa0582180-mRNA-1 |
| chr4_2 | exon | 333622 | 333933 | 333622 | ID=Msa0582180-mRNA-1:exon:73;Parent=Msa0582180-mRNA-1 |
| chr4_2 | exon | 334566 | 334933 | 334566 | ID=Msa0582180-mRNA-1:exon:72;Parent=Msa0582180-mRNA-1 |
| chr4_2 | five_prime_UTR | 334740 | 334933 | 334740 | ID=Msa0582180-mRNA-1:five_prime_utr;Parent=Msa0582180-mRNA-1 |
| chr4_2 | CDS | 334566 | 334739 | 334566 | ID=Msa0582180-mRNA-1:cds;Parent=Msa0582180-mRNA-1 |
| chr4_2 | CDS | 333622 | 333933 | 333622 | ID=Msa0582180-mRNA-1:cds;Parent=Msa0582180-mRNA-1 |
| chr4_2 | CDS | 333267 | 333533 | 333267 | ID=Msa0582180-mRNA-1:cds;Parent=Msa0582180-mRNA-1 |
| chr4_2 | CDS | 333072 | 333119 | 333072 | ID=Msa0582180-mRNA-1:cds;Parent=Msa0582180-mRNA-1 |
| chr4_2 | CDS | 332852 | 332917 | 332852 | ID=Msa0582180-mRNA-1:cds;Parent=Msa0582180-mRNA-1 |
| chr4_2 | CDS | 332618 | 332721 | 332618 | ID=Msa0582180-mRNA-1:cds;Parent=Msa0582180-mRNA-1 |
| chr4_2 | CDS | 332383 | 332476 | 332383 | ID=Msa0582180-mRNA-1:cds;Parent=Msa0582180-mRNA-1 |
| chr4_2 | CDS | 332251 | 332307 | 332251 | ID=Msa0582180-mRNA-1:cds;Parent=Msa0582180-mRNA-1 |
| chr4_2 | CDS | 331224 | 331665 | 331224 | ID=Msa0582180-mRNA-1:cds;Parent=Msa0582180-mRNA-1 |
| chr4_2 | CDS | 330987 | 331141 | 330987 | ID=Msa0582180-mRNA-1:cds;Parent=Msa0582180-mRNA-1 |
| chr4_2 | CDS | 330796 | 330861 | 330796 | ID=Msa0582180-mRNA-1:cds;Parent=Msa0582180-mRNA-1 |
| chr4_2 | CDS | 330647 | 330715 | 330647 | ID=Msa0582180-mRNA-1:cds;Parent=Msa0582180-mRNA-1 |
| chr4_2 | CDS | 330472 | 330564 | 330472 | ID=Msa0582180-mRNA-1:cds;Parent=Msa0582180-mRNA-1 |
| chr4_2 | CDS | 330077 | 330142 | 330077 | ID=Msa0582180-mRNA-1:cds;Parent=Msa0582180-mRNA-1 |
| chr4_2 | CDS | 329837 | 329881 | 329837 | ID=Msa0582180-mRNA-1:cds;Parent=Msa0582180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
