AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0554410


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0554410 MtrunA17_Chr4g0040261 98.558 416 6 0 1 416 34 449 0.0 853
Msa0554410 MtrunA17_Chr4g0040271 92.584 418 30 1 1 418 1 417 0.0 801
Msa0554410 MtrunA17_Chr4g0040251 85.577 416 60 0 1 416 1 416 0.0 751
Msa0554410 MtrunA17_Chr4g0040221 70.238 420 117 4 1 416 1 416 0.0 570
Msa0554410 MtrunA17_Chr4g0040011 65.176 425 141 4 1 419 9 432 0.0 550
Msa0554410 MtrunA17_Chr4g0040001 65.035 429 140 5 1 420 1 428 0.0 547
Msa0554410 MtrunA17_Chr4g0040231 63.615 426 144 4 4 420 5 428 0.0 536
Msa0554410 MtrunA17_Chr7g0217051 61.151 417 161 1 5 420 7 423 0.0 531
Msa0554410 MtrunA17_Chr7g0248011 52.358 424 198 4 2 423 3 424 3.70e-151 437
Msa0554410 MtrunA17_Chr6g0457271 57.735 362 148 4 66 423 5 365 5.70e-145 417
Msa0554410 MtrunA17_Chr6g0457281 55.670 291 123 3 86 371 1 290 4.75e-112 330
Msa0554410 MtrunA17_Chr1g0147071 27.854 438 275 12 9 420 10 432 6.04e-45 162
Msa0554410 MtrunA17_Chr5g0393471 27.778 234 164 4 190 420 65 296 1.26e-19 89.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0554410 AT3G49190.1 29.613 439 273 9 9 420 18 447 2.91e-54 188
Msa0554410 AT5G53390.1 29.412 425 273 9 9 415 15 430 2.06e-53 185
Msa0554410 AT5G16350.3 29.829 409 258 10 9 404 7 399 4.57e-53 184
Msa0554410 AT5G12420.2 29.717 424 257 10 9 404 7 417 8.19e-53 183
Msa0554410 AT5G12420.1 29.717 424 257 10 9 404 7 417 1.04e-52 183
Msa0554410 AT5G16350.1 28.169 426 263 9 9 404 7 419 2.57e-51 180
Msa0554410 AT3G49210.1 28.668 443 275 10 9 415 26 463 7.31e-48 171
Msa0554410 AT5G22490.1 29.452 438 265 15 10 420 12 432 2.94e-47 169
Msa0554410 AT3G49200.1 28.111 434 280 11 9 415 26 454 4.73e-46 166
Msa0554410 AT2G38995.2 29.837 429 271 12 9 420 21 436 1.81e-45 164
Msa0554410 AT5G53380.1 27.752 436 278 11 1 413 1 422 1.81e-44 161
Msa0554410 AT5G16350.2 27.949 390 238 9 9 368 7 383 3.92e-44 159
Msa0554410 AT1G72110.1 27.358 424 281 11 9 416 12 424 2.05e-41 153
Msa0554410 AT5G22490.2 30.052 386 226 15 10 368 12 380 3.29e-40 148
Msa0554410 AT2G38995.4 30.108 372 231 11 65 419 7 366 2.01e-39 145
Msa0554410 AT5G37300.1 29.298 413 260 13 9 404 17 414 4.54e-39 147
Msa0554410 AT5G37300.4 29.298 413 260 13 9 404 35 432 4.86e-39 147
Msa0554410 AT2G38995.3 30.027 373 232 11 65 420 7 367 7.32e-39 145
Msa0554410 AT3G49210.2 28.198 383 234 10 9 355 26 403 9.84e-39 145
Msa0554410 AT1G72110.2 26.526 426 273 12 9 416 12 415 1.03e-36 140
Msa0554410 AT5G37300.2 28.877 374 240 11 9 368 35 396 4.93e-33 129
Msa0554410 AT5G37300.3 30.970 268 170 9 9 270 35 293 6.45e-26 107

Find 129 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAATTCCTTCTCTGATTT+TGG 0.058227 4_1:+51647203 Msa0554410:CDS
CTAACCCCTTAGAGTTTATT+TGG 0.122697 4_1:+51648421 Msa0554410:CDS
ATCTTTAATCATTGAGCTTT+TGG 0.190332 4_1:-51647237 None:intergenic
TGCTTTCCAAATAAACTCTA+AGG 0.205452 4_1:-51648427 None:intergenic
TTAACATGACTCCTATTTAT+AGG 0.214497 4_1:-51646348 None:intergenic
ATTAGTCTCTACTTTATAAT+AGG 0.215084 4_1:+51646441 Msa0554410:five_prime_UTR
TTATTTACCCAACTCTTTAA+TGG 0.225076 4_1:-51644757 None:intergenic
ATAATTGTACAAATATTATT+AGG 0.279221 4_1:+51646291 Msa0554410:intron
TATTTACCCAACTCTTTAAT+GGG 0.300807 4_1:-51644756 None:intergenic
CATTGAATGGCTCTTAGATA+TGG 0.311941 4_1:+51648494 Msa0554410:CDS
TTAAAGAGTTGGGTAAATAA+TGG 0.312661 4_1:+51644760 Msa0554410:five_prime_UTR
ATCAGAGAAGGAATTGAAAA+AGG 0.315071 4_1:-51647198 None:intergenic
TTGCTTAGTACTAGGAATAT+TGG 0.315217 4_1:+51648288 Msa0554410:CDS
TTAGTCTCTACTTTATAATA+GGG 0.325163 4_1:+51646442 Msa0554410:five_prime_UTR
CTTTGATATGACCTATAAAT+AGG 0.338477 4_1:+51646337 Msa0554410:five_prime_UTR
TTCCACTGGCCCAATCAAAT+TGG 0.339045 4_1:-51648681 None:intergenic
ACAATAAATGATGTGATTAC+TGG 0.341873 4_1:+51648186 Msa0554410:CDS
CTTTAATTAGGCTACAATAT+TGG 0.347825 4_1:+51645064 Msa0554410:five_prime_UTR
TGGCAAAATGAAATGGAAAA+AGG 0.350565 4_1:+51646815 Msa0554410:CDS
ATCATTTCAAAGCTTTAATT+AGG 0.356588 4_1:+51645052 Msa0554410:five_prime_UTR
CATGCAAGAAATGGACAAAA+AGG 0.359212 4_1:+51648236 Msa0554410:CDS
TGCCCTAAGGGCACATGTTA+AGG 0.366858 4_1:+51644863 Msa0554410:five_prime_UTR
GGCTGATTCAAAATCTCCTT+GGG 0.370234 4_1:+51648341 Msa0554410:CDS
TTTCATCAAGAGAGAATGAT+AGG 0.372720 4_1:-51647322 None:intergenic
ACACTTATAAAGTACCATTA+TGG 0.373714 4_1:-51646665 None:intergenic
ATTCCTTAACATGTGCCCTT+AGG 0.376609 4_1:-51644866 None:intergenic
GCAGTTGCTAAACATATCTA+TGG 0.381434 4_1:+51648629 Msa0554410:CDS
TAGACAGGCCTTGCTTAACT+TGG 0.385229 4_1:-51648397 None:intergenic
GGAACGTGCATATGATCTTC+AGG 0.385331 4_1:-51646849 None:intergenic
TGCCCTCAAGGCACATGTTA+AGG 0.386575 4_1:-51644983 None:intergenic
GTTCCTTCAGCATTGCTTGT+TGG 0.387997 4_1:-51646996 None:intergenic
GTGCATATATAATACTATAA+TGG 0.393680 4_1:+51646471 Msa0554410:exon
TTGTCATTTCTTGAATTGAT+TGG 0.394866 4_1:-51648317 None:intergenic
ACCACAAGACAAACCCCTTT+GGG 0.407424 4_1:+51646953 Msa0554410:CDS
AAGATGACAAGACACCTATA+TGG 0.407784 4_1:+51647255 Msa0554410:CDS
GCCAGTGGAACCTATGGCTT+TGG 0.408139 4_1:+51648694 Msa0554410:CDS
ATACATGTAAGAAAGAAATA+TGG 0.415159 4_1:-51648368 None:intergenic
TATTGTCCACTTGGACTAAC+CGG 0.416633 4_1:-51646517 None:intergenic
ACAAAGATGGCAAAATGAAA+TGG 0.416873 4_1:+51646808 Msa0554410:CDS
TTCCTTAACATGTGCCCTTA+GGG 0.417120 4_1:-51644865 None:intergenic
TCCACGTTTCTCCTCCATAA+TGG 0.418365 4_1:+51646651 Msa0554410:CDS
TAGGCTACAATATTGGTTGT+AGG 0.420235 4_1:+51645071 Msa0554410:five_prime_UTR
AGGCTGATTCAAAATCTCCT+TGG 0.423311 4_1:+51648340 Msa0554410:CDS
CACCACAAGACAAACCCCTT+TGG 0.423718 4_1:+51646952 Msa0554410:CDS
GTTGTCATATCCAATTTGAT+TGG 0.424756 4_1:+51648671 Msa0554410:CDS
CTCTAAGGGGTTAGATAGAC+AGG 0.433414 4_1:-51648412 None:intergenic
GAGGAGAAACGTGGATTGAT+AGG 0.433511 4_1:-51646643 None:intergenic
TTGTCATATCCAATTTGATT+GGG 0.434336 4_1:+51648672 Msa0554410:CDS
TTGTTGGATATTTAATCAAA+TGG 0.434523 4_1:-51646980 None:intergenic
TCCCAAAGGGGTTTGTCTTG+TGG 0.436342 4_1:-51646954 None:intergenic
TTCCTTAACATGTGCCTTGA+GGG 0.436910 4_1:+51644981 Msa0554410:five_prime_UTR
ATAGTTTGAGAATCATCAAT+TGG 0.437770 4_1:-51646595 None:intergenic
TAGGCTATACATGCAAGAAA+TGG 0.441669 4_1:+51648227 Msa0554410:CDS
CCTTCCTCACCATTCCATAT+AGG 0.442303 4_1:-51647269 None:intergenic
TGGTGATGGTTACTCTCTCA+TGG 0.446072 4_1:+51647046 Msa0554410:CDS
CAATAAATGATGTGATTACT+GGG 0.449069 4_1:+51648187 Msa0554410:CDS
AATCAAATGGATTTCCCAAA+GGG 0.450613 4_1:-51646967 None:intergenic
GATTGGTGTTGCTTAGTACT+AGG 0.452198 4_1:+51648280 Msa0554410:CDS
TGGATTATTACTACAATTGA+AGG 0.452397 4_1:+51644780 Msa0554410:five_prime_UTR
GGCTTGTACTTTACAATGAC+AGG 0.453421 4_1:+51648734 Msa0554410:CDS
GCTTGGCCCATTAAAGAGTT+GGG 0.453453 4_1:+51644750 None:intergenic
AGCTTGGCCCATTAAAGAGT+TGG 0.453980 4_1:+51644749 None:intergenic
TCCGAAAACATATGAACATA+GGG 0.457117 4_1:-51646554 None:intergenic
TAAGCTTCATTCAAATGATA+AGG 0.458925 4_1:+51648897 Msa0554410:three_prime_UTR
GATTGGGCCAGTGGAACCTA+TGG 0.464336 4_1:+51648688 Msa0554410:CDS
TTAGTTGATAGGGATGACTT+TGG 0.472273 4_1:-51645214 None:intergenic
GATATGGAGCTGAAATTAAG+AGG 0.473758 4_1:+51648510 Msa0554410:CDS
ACACTTGTTATCTCCAAAGA+AGG 0.477485 4_1:+51647142 Msa0554410:CDS
AGACAGGCCTTGCTTAACTT+GGG 0.483628 4_1:-51648396 None:intergenic
AAAACAATCAAGTCTAAGCT+TGG 0.484750 4_1:+51647347 Msa0554410:CDS
GCTTTCCAAATAAACTCTAA+GGG 0.494104 4_1:-51648426 None:intergenic
GGAAAAGATAGAGGAAGAGA+AGG 0.494447 4_1:-51647104 None:intergenic
TTAACTAAGAATAGCAAAAG+AGG 0.497247 4_1:+51648822 Msa0554410:three_prime_UTR
AACATCAAATTCCACAGGAT+TGG 0.500187 4_1:+51648263 Msa0554410:CDS
TCATGTTAACTTGTGCCCTA+AGG 0.501083 4_1:+51644850 Msa0554410:five_prime_UTR
ATAAATATTGAAACTTGTCT+CGG 0.505870 4_1:-51646406 None:intergenic
GCCAAAGCCATAGGTTCCAC+TGG 0.507030 4_1:-51648695 None:intergenic
ATCCAATTTGATTGGGCCAG+TGG 0.512219 4_1:+51648679 Msa0554410:CDS
GGATGGTTTGCCAAAGCCAT+AGG 0.516215 4_1:-51648704 None:intergenic
CATGTTAACTTGTGCCCTAA+GGG 0.521754 4_1:+51644851 Msa0554410:five_prime_UTR
ATCCGAAAACATATGAACAT+AGG 0.525975 4_1:-51646555 None:intergenic
GTAAAGTACAAGCCTTTCAC+AGG 0.526010 4_1:-51648725 None:intergenic
TTGGCAAACCATCCTGTGAA+AGG 0.530246 4_1:+51648713 Msa0554410:CDS
TTGCGTGAAGGAAAAGATAG+AGG 0.531251 4_1:-51647113 None:intergenic
CTTCATCATGCACTTGGTGA+TGG 0.536861 4_1:+51647032 Msa0554410:CDS
AAAAGGAGAATATGGTTGAA+GGG 0.537806 4_1:-51647181 None:intergenic
TAAATATTGAAACTTGTCTC+GGG 0.538146 4_1:-51646405 None:intergenic
GTTAAGATGATGGTTACCTC+AGG 0.538389 4_1:-51648761 None:intergenic
TTCAAACTTCATCATGCACT+TGG 0.538549 4_1:+51647026 Msa0554410:CDS
TTTGGAGATAACAAGTGTGA+TGG 0.547485 4_1:-51647137 None:intergenic
AATGTTAACTTGTGCCCTCA+AGG 0.552999 4_1:-51644995 None:intergenic
AGTACAAGCCTTTCACAGGA+TGG 0.556400 4_1:-51648721 None:intergenic
GGTGATGGTTACTCTCTCAT+GGG 0.557425 4_1:+51647047 Msa0554410:CDS
TAATCAAATGGATTTCCCAA+AGG 0.558077 4_1:-51646968 None:intergenic
TTATGTGTCAAAGATTATGA+TGG 0.567297 4_1:+51646923 Msa0554410:CDS
GACAGGCCTTGCTTAACTTG+GGG 0.567657 4_1:-51648395 None:intergenic
AAACTAGAGAGTTAAGATGA+TGG 0.578017 4_1:-51648771 None:intergenic
CACTTGTTATCTCCAAAGAA+GGG 0.584946 4_1:+51647143 Msa0554410:CDS
CTTTCCAAATAAACTCTAAG+GGG 0.586770 4_1:-51648425 None:intergenic
GTTCCTTAACATGTGCCTTG+AGG 0.587131 4_1:+51644980 Msa0554410:five_prime_UTR
CCTATATGGAATGGTGAGGA+AGG 0.587168 4_1:+51647269 Msa0554410:CDS
GCAAGAACATCAAATTCCAC+AGG 0.588042 4_1:+51648258 Msa0554410:CDS
CTTTGAATATGTAACAGAGC+CGG 0.590117 4_1:+51646498 Msa0554410:CDS
GTGTTAAAGTATTGTCCACT+TGG 0.592800 4_1:-51646526 None:intergenic
TGATAGGTAAGAAGACATGT+TGG 0.596085 4_1:-51646627 None:intergenic
GCTCCATCCAAAATCAGAGA+AGG 0.601636 4_1:-51647210 None:intergenic
GACAAGACACCTATATGGAA+TGG 0.604148 4_1:+51647260 Msa0554410:CDS
TATCCAACAAGCAATGCTGA+AGG 0.616041 4_1:+51646993 Msa0554410:CDS
AAGTGTGATGGTTTGCGTGA+AGG 0.622326 4_1:-51647125 None:intergenic
ACAGAGCCGGTTAGTCCAAG+TGG 0.626388 4_1:+51646511 Msa0554410:CDS
ATCAATCCCCAAGTTAAGCA+AGG 0.627042 4_1:+51648389 Msa0554410:CDS
ATCAATTCAAGAAATGACAA+AGG 0.634277 4_1:+51648320 Msa0554410:CDS
GCTGAAATTAAGAGGACATG+AGG 0.640508 4_1:+51648518 Msa0554410:CDS
ATAGTGTTAGATTCAAACTG+AGG 0.641879 4_1:-51648953 None:intergenic
TACAATGACAGGTGGACCTG+AGG 0.642479 4_1:+51648745 Msa0554410:CDS
ATCAAATGGATTTCCCAAAG+GGG 0.644210 4_1:-51646966 None:intergenic
CTTATAAAGTACCATTATGG+AGG 0.648669 4_1:-51646662 None:intergenic
AATCAAGTCTAAGCTTGGAG+TGG 0.650359 4_1:+51647352 Msa0554410:CDS
CTGATTCAAAATCTCCTTGG+GGG 0.654193 4_1:+51648343 Msa0554410:CDS
ACCATTATGGAGGAGAAACG+TGG 0.657361 4_1:-51646652 None:intergenic
GCTGATTCAAAATCTCCTTG+GGG 0.657580 4_1:+51648342 Msa0554410:CDS
ATATAGGTGAGAGACAAAGA+TGG 0.658680 4_1:+51646795 Msa0554410:intron
GATAGGTTTGATAGTACACA+AGG 0.661721 4_1:-51647305 None:intergenic
ACTAAGCAACACCAATCCTG+TGG 0.666809 4_1:-51648274 None:intergenic
TTGTACTTTACAATGACAGG+TGG 0.673805 4_1:+51648737 Msa0554410:CDS
GACACCTATATGGAATGGTG+AGG 0.677689 4_1:+51647265 Msa0554410:CDS
CCGAAAACATATGAACATAG+GGG 0.692361 4_1:-51646553 None:intergenic
AAAACATATGAACATAGGGG+TGG 0.715907 4_1:-51646550 None:intergenic
AATAAATGATGTGATTACTG+GGG 0.718291 4_1:+51648188 Msa0554410:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAATTTTATACATATAATAA+AGG + chr4_1:51644826-51644845 Msa0554410:five_prime_UTR 10.0%
!!! GTTTTTCAAAAAAAAAAAAT+CGG - chr4_1:51645590-51645609 None:intergenic 10.0%
!! ATAATTGTACAAATATTATT+AGG + chr4_1:51646291-51646310 Msa0554410:intron 10.0%
!!! ATTTATTAATGAAACTTTTA+AGG - chr4_1:51646704-51646723 None:intergenic 10.0%
!!! AAAAAAAAAACACGTTTTTT+GGG - chr4_1:51645119-51645138 None:intergenic 15.0%
!!! AAAAAAAAAAACACGTTTTT+TGG - chr4_1:51645120-51645139 None:intergenic 15.0%
!!! TAATGATTTTTTAGTTGATA+GGG - chr4_1:51645227-51645246 None:intergenic 15.0%
!! GAAATAGTCAAAAAATTATA+GGG - chr4_1:51645322-51645341 None:intergenic 15.0%
!! AGAAATAGTCAAAAAATTAT+AGG - chr4_1:51645323-51645342 None:intergenic 15.0%
!!! TCTAAAATTTGAAAAAACAA+AGG + chr4_1:51645418-51645437 Msa0554410:intron 15.0%
!! AAGAAAATATAAAAACTCAT+TGG - chr4_1:51645534-51645553 None:intergenic 15.0%
!!! AATCATTTTGGTATAAATTT+TGG + chr4_1:51646157-51646176 Msa0554410:intron 15.0%
!! TATATTCTACATGTTTATAT+AGG + chr4_1:51646779-51646798 Msa0554410:intron 15.0%
!! CAATTGAAAAATTGTAATTA+AGG - chr4_1:51648104-51648123 None:intergenic 15.0%
!! GAAAAATAAATAAAAGACTT+GGG - chr4_1:51648566-51648585 None:intergenic 15.0%
!! TGAAAAATAAATAAAAGACT+TGG - chr4_1:51648567-51648586 None:intergenic 15.0%
!!! TAATCTTTTTTAAATAGAGA+AGG - chr4_1:51648801-51648820 None:intergenic 15.0%
!!! TTTCTGATGTCTTTTATTAT+AGG - chr4_1:51645023-51645042 None:intergenic 20.0%
!!! ATCATTTCAAAGCTTTAATT+AGG + chr4_1:51645052-51645071 Msa0554410:five_prime_UTR 20.0%
!!! GTAATGATTTTTTAGTTGAT+AGG - chr4_1:51645228-51645247 None:intergenic 20.0%
!!! ATTTTTTTTTTGCCAAGATT+TGG - chr4_1:51645261-51645280 None:intergenic 20.0%
!!! GGTTTTTTTTTCGTTTTTTT+AGG - chr4_1:51645297-51645316 None:intergenic 20.0%
!!! ATTTAAACCTTTTTACATGT+TGG + chr4_1:51645392-51645411 Msa0554410:intron 20.0%
!!! AAAGAAATTCACTGATTTTT+TGG + chr4_1:51645465-51645484 Msa0554410:intron 20.0%
!! AAATATAAAAACTCATTGGT+TGG - chr4_1:51645530-51645549 None:intergenic 20.0%
!!! CATTGATAATTTTTTCTTAG+TGG - chr4_1:51645675-51645694 None:intergenic 20.0%
!! AAAATTATCAATGACATCTT+CGG + chr4_1:51645682-51645701 Msa0554410:intron 20.0%
!!! AAATTTTATCTCATTAAGGA+AGG - chr4_1:51645934-51645953 None:intergenic 20.0%
!! TTCCTTAATGAGATAAAATT+TGG + chr4_1:51645933-51645952 Msa0554410:intron 20.0%
!!! AACCAAATTTTATCTCATTA+AGG - chr4_1:51645938-51645957 None:intergenic 20.0%
!! ATACAATTGTAAAAAGATGA+AGG + chr4_1:51646124-51646143 Msa0554410:intron 20.0%
!!! TTCTTGTTCTCTTTTTTTAT+CGG - chr4_1:51646247-51646266 None:intergenic 20.0%
!! ATAAATATTGAAACTTGTCT+CGG - chr4_1:51646409-51646428 None:intergenic 20.0%
!!! ATTAGTCTCTACTTTATAAT+AGG + chr4_1:51646441-51646460 Msa0554410:five_prime_UTR 20.0%
!! TTAGTCTCTACTTTATAATA+GGG + chr4_1:51646442-51646461 Msa0554410:five_prime_UTR 20.0%
!! GTGCATATATAATACTATAA+TGG + chr4_1:51646471-51646490 Msa0554410:exon 20.0%
!!! GTACATTTTTTTTTTTGTTG+AGG + chr4_1:51646732-51646751 Msa0554410:intron 20.0%
!!! ATTCAATTGATTCACTTTTT+GGG - chr4_1:51646881-51646900 None:intergenic 20.0%
!!! AATTCAATTGATTCACTTTT+TGG - chr4_1:51646882-51646901 None:intergenic 20.0%
!! TTGTTGGATATTTAATCAAA+TGG - chr4_1:51646983-51647002 None:intergenic 20.0%
!! AAAAATTGTAATTAAGGTGT+AGG - chr4_1:51648098-51648117 None:intergenic 20.0%
!! ATACATGTAAGAAAGAAATA+TGG - chr4_1:51648371-51648390 None:intergenic 20.0%
! TTAAAGAGTTGGGTAAATAA+TGG + chr4_1:51644760-51644779 Msa0554410:five_prime_UTR 25.0%
! TGGATTATTACTACAATTGA+AGG + chr4_1:51644780-51644799 Msa0554410:five_prime_UTR 25.0%
! CTTTAATTAGGCTACAATAT+TGG + chr4_1:51645064-51645083 Msa0554410:five_prime_UTR 25.0%
! TAGTCAAAAAATTATAGGGA+TGG - chr4_1:51645318-51645337 None:intergenic 25.0%
! TTAAAATCCGAACAAATGAA+GGG - chr4_1:51645371-51645390 None:intergenic 25.0%
!! TTTAAAATCCGAACAAATGA+AGG - chr4_1:51645372-51645391 None:intergenic 25.0%
! TAGAATTCCAACATGTAAAA+AGG - chr4_1:51645402-51645421 None:intergenic 25.0%
!!! GATTTTTTGGATAGATATGA+TGG + chr4_1:51645478-51645497 Msa0554410:intron 25.0%
! TGAATTACTGAAGATAGAAT+TGG + chr4_1:51645617-51645636 Msa0554410:intron 25.0%
! ATATAGTTAGATCTTCTACT+TGG - chr4_1:51645859-51645878 None:intergenic 25.0%
!!! ATTGCTCATTTTTTTAAGAG+AGG + chr4_1:51646046-51646065 Msa0554410:intron 25.0%
!! GGATCTTTGTAAAATCATTT+TGG + chr4_1:51646145-51646164 Msa0554410:intron 25.0%
! CTTTGATATGACCTATAAAT+AGG + chr4_1:51646337-51646356 Msa0554410:five_prime_UTR 25.0%
! TTAACATGACTCCTATTTAT+AGG - chr4_1:51646351-51646370 None:intergenic 25.0%
! TAAATATTGAAACTTGTCTC+GGG - chr4_1:51646408-51646427 None:intergenic 25.0%
!! TTCATATGTTTTCGGATTTT+TGG + chr4_1:51646561-51646580 Msa0554410:CDS 25.0%
! ATAGTTTGAGAATCATCAAT+TGG - chr4_1:51646598-51646617 None:intergenic 25.0%
!! ACACTTATAAAGTACCATTA+TGG - chr4_1:51646668-51646687 None:intergenic 25.0%
! TTATGTGTCAAAGATTATGA+TGG + chr4_1:51646923-51646942 Msa0554410:CDS 25.0%
!! ATCTTTAATCATTGAGCTTT+TGG - chr4_1:51647240-51647259 None:intergenic 25.0%
! TCTAGCATCTTATCTAATAT+AGG - chr4_1:51647627-51647646 None:intergenic 25.0%
! AAGCTATAAGAGAAACTATT+AGG + chr4_1:51647735-51647754 Msa0554410:intron 25.0%
!! TTTTGACCTTGAAATTCTTT+AGG - chr4_1:51647921-51647940 None:intergenic 25.0%
! ACAATAAATGATGTGATTAC+TGG + chr4_1:51648186-51648205 Msa0554410:CDS 25.0%
! CAATAAATGATGTGATTACT+GGG + chr4_1:51648187-51648206 Msa0554410:CDS 25.0%
! AATAAATGATGTGATTACTG+GGG + chr4_1:51648188-51648207 Msa0554410:CDS 25.0%
!! TTGTCATTTCTTGAATTGAT+TGG - chr4_1:51648320-51648339 None:intergenic 25.0%
! ATCAATTCAAGAAATGACAA+AGG + chr4_1:51648320-51648339 Msa0554410:CDS 25.0%
! AAGCACAAAAAATAATCAAG+AGG + chr4_1:51648445-51648464 Msa0554410:CDS 25.0%
! TTGTCATATCCAATTTGATT+GGG + chr4_1:51648672-51648691 Msa0554410:CDS 25.0%
! TTAACTAAGAATAGCAAAAG+AGG + chr4_1:51648822-51648841 Msa0554410:three_prime_UTR 25.0%
! TAAGCTTCATTCAAATGATA+AGG + chr4_1:51648897-51648916 Msa0554410:three_prime_UTR 25.0%
! CAATGTAAAGTTGCTCTTTT+TGG - chr4_1:51644892-51644911 None:intergenic 30.0%
CAAAAAGAGCAACTTTACAT+TGG + chr4_1:51644890-51644909 Msa0554410:five_prime_UTR 30.0%
!!! AAAAAACACGTTTTTTGGGA+TGG - chr4_1:51645115-51645134 None:intergenic 30.0%
ACAACCAAAAAACCAAATCT+TGG + chr4_1:51645246-51645265 Msa0554410:five_prime_UTR 30.0%
!!! TTTGCCAAGATTTGGTTTTT+TGG - chr4_1:51645253-51645272 None:intergenic 30.0%
!! TACCATTTCACACTTTTTAG+AGG + chr4_1:51645345-51645364 Msa0554410:intron 30.0%
AATTGGCAAATTATGAAAGC+TGG + chr4_1:51645634-51645653 Msa0554410:intron 30.0%
ATTGGCAAATTATGAAAGCT+GGG + chr4_1:51645635-51645654 Msa0554410:intron 30.0%
TCCGAAAACATATGAACATA+GGG - chr4_1:51646557-51646576 None:intergenic 30.0%
ATCCGAAAACATATGAACAT+AGG - chr4_1:51646558-51646577 None:intergenic 30.0%
! CTTATAAAGTACCATTATGG+AGG - chr4_1:51646665-51646684 None:intergenic 30.0%
ACAAAGATGGCAAAATGAAA+TGG + chr4_1:51646808-51646827 Msa0554410:CDS 30.0%
TGGCAAAATGAAATGGAAAA+AGG + chr4_1:51646815-51646834 Msa0554410:CDS 30.0%
AATGAAATGGAAAAAGGTAG+AGG + chr4_1:51646821-51646840 Msa0554410:CDS 30.0%
!!! GATTCACTTTTTGGGAATAT+TGG - chr4_1:51646873-51646892 None:intergenic 30.0%
! AATCAAATGGATTTCCCAAA+GGG - chr4_1:51646970-51646989 None:intergenic 30.0%
! TAATCAAATGGATTTCCCAA+AGG - chr4_1:51646971-51646990 None:intergenic 30.0%
AAAAGGAGAATATGGTTGAA+GGG - chr4_1:51647184-51647203 None:intergenic 30.0%
AAAAAGGAGAATATGGTTGA+AGG - chr4_1:51647185-51647204 None:intergenic 30.0%
GGAATTGAAAAAGGAGAATA+TGG - chr4_1:51647192-51647211 None:intergenic 30.0%
ATCAGAGAAGGAATTGAAAA+AGG - chr4_1:51647201-51647220 None:intergenic 30.0%
! TTCAATTCCTTCTCTGATTT+TGG + chr4_1:51647203-51647222 Msa0554410:CDS 30.0%
TTTCATCAAGAGAGAATGAT+AGG - chr4_1:51647325-51647344 None:intergenic 30.0%
AAAACAATCAAGTCTAAGCT+TGG + chr4_1:51647347-51647366 Msa0554410:CDS 30.0%
TAGAAATGACAACATTAGAG+AGG + chr4_1:51647585-51647604 Msa0554410:intron 30.0%
AGAAATGACAACATTAGAGA+GGG + chr4_1:51647586-51647605 Msa0554410:intron 30.0%
GACTTGTGAATTCTATAGTT+AGG + chr4_1:51647682-51647701 Msa0554410:intron 30.0%
TTAGGAGAGTAAATCAGATA+GGG + chr4_1:51647700-51647719 Msa0554410:intron 30.0%
TAGGCTCAATCTATTAGAAT+AGG + chr4_1:51647876-51647895 Msa0554410:intron 30.0%
TTTCAGTTGTATCAACCATT+AGG - chr4_1:51647975-51647994 None:intergenic 30.0%
TTGCTTAGTACTAGGAATAT+TGG + chr4_1:51648288-51648307 Msa0554410:CDS 30.0%
CTTTCCAAATAAACTCTAAG+GGG - chr4_1:51648428-51648447 None:intergenic 30.0%
GCTTTCCAAATAAACTCTAA+GGG - chr4_1:51648429-51648448 None:intergenic 30.0%
TGCTTTCCAAATAAACTCTA+AGG - chr4_1:51648430-51648449 None:intergenic 30.0%
!! TCACTGTTTTTCTCATTGAA+TGG + chr4_1:51648481-51648500 Msa0554410:CDS 30.0%
GTTGTCATATCCAATTTGAT+TGG + chr4_1:51648671-51648690 Msa0554410:CDS 30.0%
AAACTAGAGAGTTAAGATGA+TGG - chr4_1:51648774-51648793 None:intergenic 30.0%
! TTGACTGCACGACTTTTAAT+AGG + chr4_1:51644941-51644960 Msa0554410:five_prime_UTR 35.0%
! TAGGCTACAATATTGGTTGT+AGG + chr4_1:51645071-51645090 Msa0554410:five_prime_UTR 35.0%
!! TTAGTTGATAGGGATGACTT+TGG - chr4_1:51645217-51645236 None:intergenic 35.0%
! AAAAACTCATTGGTTGGATG+TGG - chr4_1:51645524-51645543 None:intergenic 35.0%
TGATTTCATACGAAGCAAGT+TGG - chr4_1:51646022-51646041 None:intergenic 35.0%
CTTTGAATATGTAACAGAGC+CGG + chr4_1:51646498-51646517 Msa0554410:CDS 35.0%
!! GTGTTAAAGTATTGTCCACT+TGG - chr4_1:51646529-51646548 None:intergenic 35.0%
AAAACATATGAACATAGGGG+TGG - chr4_1:51646553-51646572 None:intergenic 35.0%
CCGAAAACATATGAACATAG+GGG - chr4_1:51646556-51646575 None:intergenic 35.0%
! CCCCTATGTTCATATGTTTT+CGG + chr4_1:51646553-51646572 Msa0554410:CDS 35.0%
TGATAGGTAAGAAGACATGT+TGG - chr4_1:51646630-51646649 None:intergenic 35.0%
ATATAGGTGAGAGACAAAGA+TGG + chr4_1:51646795-51646814 Msa0554410:intron 35.0%
! ATCAAATGGATTTCCCAAAG+GGG - chr4_1:51646969-51646988 None:intergenic 35.0%
TTCAAACTTCATCATGCACT+TGG + chr4_1:51647026-51647045 Msa0554410:CDS 35.0%
TTTGGAGATAACAAGTGTGA+TGG - chr4_1:51647140-51647159 None:intergenic 35.0%
!! ACACTTGTTATCTCCAAAGA+AGG + chr4_1:51647142-51647161 Msa0554410:CDS 35.0%
!! CACTTGTTATCTCCAAAGAA+GGG + chr4_1:51647143-51647162 Msa0554410:CDS 35.0%
! ATTCCTTCTCTGATTTTGGA+TGG + chr4_1:51647207-51647226 Msa0554410:CDS 35.0%
AAGATGACAAGACACCTATA+TGG + chr4_1:51647255-51647274 Msa0554410:CDS 35.0%
! GATAGGTTTGATAGTACACA+AGG - chr4_1:51647308-51647327 None:intergenic 35.0%
TGTTGTACGAGACATAATGT+TGG + chr4_1:51647473-51647492 Msa0554410:intron 35.0%
AAGCAAGCGTAGCAAAAATA+AGG + chr4_1:51647521-51647540 Msa0554410:intron 35.0%
AGATGCTAGAAACTAGACTT+AGG + chr4_1:51647637-51647656 Msa0554410:intron 35.0%
! AAACTAGACTTAGGTGGTTT+TGG + chr4_1:51647646-51647665 Msa0554410:intron 35.0%
GTTAGGAGAGTAAATCAGAT+AGG + chr4_1:51647699-51647718 Msa0554410:intron 35.0%
TAGGAGAGTAAATCAGATAG+GGG + chr4_1:51647701-51647720 Msa0554410:intron 35.0%
!!! GGATAAGGTTGGTTGTTTTT+GGG + chr4_1:51647850-51647869 Msa0554410:intron 35.0%
TCGAAGCCTAAAGAATTTCA+AGG + chr4_1:51647912-51647931 Msa0554410:intron 35.0%
TCCAAGTTCATGCAATTTGT+TGG + chr4_1:51648067-51648086 Msa0554410:intron 35.0%
! CCAAGTTCATGCAATTTGTT+GGG + chr4_1:51648068-51648087 Msa0554410:intron 35.0%
!! CAAGTTCATGCAATTTGTTG+GGG + chr4_1:51648069-51648088 Msa0554410:intron 35.0%
!! ATTACTGGGGTCATTTTCTA+TGG + chr4_1:51648201-51648220 Msa0554410:CDS 35.0%
!! GGGTCATTTTCTATGGAATT+AGG + chr4_1:51648208-51648227 Msa0554410:CDS 35.0%
TAGGCTATACATGCAAGAAA+TGG + chr4_1:51648227-51648246 Msa0554410:CDS 35.0%
CATGCAAGAAATGGACAAAA+AGG + chr4_1:51648236-51648255 Msa0554410:CDS 35.0%
AACATCAAATTCCACAGGAT+TGG + chr4_1:51648263-51648282 Msa0554410:CDS 35.0%
CTAACCCCTTAGAGTTTATT+TGG + chr4_1:51648421-51648440 Msa0554410:CDS 35.0%
CATTGAATGGCTCTTAGATA+TGG + chr4_1:51648494-51648513 Msa0554410:CDS 35.0%
GATATGGAGCTGAAATTAAG+AGG + chr4_1:51648510-51648529 Msa0554410:CDS 35.0%
AAATTAAGAGGACATGAGGT+GGG + chr4_1:51648522-51648541 Msa0554410:intron 35.0%
TTGCTATAAACATGTGTTGC+AGG + chr4_1:51648607-51648626 Msa0554410:intron 35.0%
GCAGTTGCTAAACATATCTA+TGG + chr4_1:51648629-51648648 Msa0554410:CDS 35.0%
TTGTACTTTACAATGACAGG+TGG + chr4_1:51648737-51648756 Msa0554410:CDS 35.0%
!! TCATGTTAACTTGTGCCCTA+AGG + chr4_1:51644850-51644869 Msa0554410:five_prime_UTR 40.0%
!! CATGTTAACTTGTGCCCTAA+GGG + chr4_1:51644851-51644870 Msa0554410:five_prime_UTR 40.0%
TTCCTTAACATGTGCCCTTA+GGG - chr4_1:51644868-51644887 None:intergenic 40.0%
ATTCCTTAACATGTGCCCTT+AGG - chr4_1:51644869-51644888 None:intergenic 40.0%
TTCCTTAACATGTGCCTTGA+GGG + chr4_1:51644981-51645000 Msa0554410:five_prime_UTR 40.0%
!! AATGTTAACTTGTGCCCTCA+AGG - chr4_1:51644998-51645017 None:intergenic 40.0%
! GGCCTCTAAAAAGTGTGAAA+TGG - chr4_1:51645350-51645369 None:intergenic 40.0%
TTAGAGGCCCTTCATTTGTT+CGG + chr4_1:51645361-51645380 Msa0554410:intron 40.0%
TGGATGTGGTTGTGTTTCAT+GGG - chr4_1:51645510-51645529 None:intergenic 40.0%
TTGGATGTGGTTGTGTTTCA+TGG - chr4_1:51645511-51645530 None:intergenic 40.0%
! GTCAATGATTGAGTTGTAGC+AGG + chr4_1:51645819-51645838 Msa0554410:intron 40.0%
!! TTCATACGAAGCAAGTTGGT+GGG - chr4_1:51646018-51646037 None:intergenic 40.0%
! TTTCATACGAAGCAAGTTGG+TGG - chr4_1:51646019-51646038 None:intergenic 40.0%
TATTGTCCACTTGGACTAAC+CGG - chr4_1:51646520-51646539 None:intergenic 40.0%
TATCCAACAAGCAATGCTGA+AGG + chr4_1:51646993-51647012 Msa0554410:CDS 40.0%
GGAAAAGATAGAGGAAGAGA+AGG - chr4_1:51647107-51647126 None:intergenic 40.0%
TTGCGTGAAGGAAAAGATAG+AGG - chr4_1:51647116-51647135 None:intergenic 40.0%
CACTTGAAAAAGCCCTTCTT+TGG - chr4_1:51647158-51647177 None:intergenic 40.0%
!!! CAAAGAAGGGCTTTTTCAAG+TGG + chr4_1:51647156-51647175 Msa0554410:CDS 40.0%
GACAAGACACCTATATGGAA+TGG + chr4_1:51647260-51647279 Msa0554410:CDS 40.0%
AATCAAGTCTAAGCTTGGAG+TGG + chr4_1:51647352-51647371 Msa0554410:CDS 40.0%
GATCCTCTATCGATGTAGTA+TGG + chr4_1:51647412-51647431 Msa0554410:intron 40.0%
TCACCATACTACATCGATAG+AGG - chr4_1:51647418-51647437 None:intergenic 40.0%
GTACGAGACATAATGTTGGA+CGG + chr4_1:51647477-51647496 Msa0554410:intron 40.0%
CGCTTGCTTTATGTTTGTGT+TGG - chr4_1:51647510-51647529 None:intergenic 40.0%
AGGATGTTGTGTTGAATGTG+TGG + chr4_1:51647541-51647560 Msa0554410:intron 40.0%
AACATTAGAGAGGGAGAGTT+GGG + chr4_1:51647595-51647614 Msa0554410:intron 40.0%
TGCTAGAAACTAGACTTAGG+TGG + chr4_1:51647640-51647659 Msa0554410:intron 40.0%
!! GGGATAAGGTTGGTTGTTTT+TGG + chr4_1:51647849-51647868 Msa0554410:intron 40.0%
!!! GTTGGTTGTTTTTGGGAACT+AGG + chr4_1:51647857-51647876 Msa0554410:intron 40.0%
ATCAACCATTAGGCTTAGAG+AGG - chr4_1:51647965-51647984 None:intergenic 40.0%
GCTGCAAAATCATATTGCAG+CGG + chr4_1:51648037-51648056 Msa0554410:intron 40.0%
AAATCATATTGCAGCGGTAG+AGG + chr4_1:51648043-51648062 Msa0554410:intron 40.0%
CCCAACAAATTGCATGAACT+TGG - chr4_1:51648071-51648090 None:intergenic 40.0%
GCAAGAACATCAAATTCCAC+AGG + chr4_1:51648258-51648277 Msa0554410:CDS 40.0%
!! GATTGGTGTTGCTTAGTACT+AGG + chr4_1:51648280-51648299 Msa0554410:CDS 40.0%
! AGGCTGATTCAAAATCTCCT+TGG + chr4_1:51648340-51648359 Msa0554410:CDS 40.0%
! GGCTGATTCAAAATCTCCTT+GGG + chr4_1:51648341-51648360 Msa0554410:CDS 40.0%
! GCTGATTCAAAATCTCCTTG+GGG + chr4_1:51648342-51648361 Msa0554410:CDS 40.0%
CTGATTCAAAATCTCCTTGG+GGG + chr4_1:51648343-51648362 Msa0554410:CDS 40.0%
AAAGAAATATGGTTCCCCCA+AGG - chr4_1:51648360-51648379 None:intergenic 40.0%
ATCAATCCCCAAGTTAAGCA+AGG + chr4_1:51648389-51648408 Msa0554410:CDS 40.0%
GCTGAAATTAAGAGGACATG+AGG + chr4_1:51648518-51648537 Msa0554410:CDS 40.0%
GAAATTAAGAGGACATGAGG+TGG + chr4_1:51648521-51648540 Msa0554410:intron 40.0%
GTAAAGTACAAGCCTTTCAC+AGG - chr4_1:51648728-51648747 None:intergenic 40.0%
GGCTTGTACTTTACAATGAC+AGG + chr4_1:51648734-51648753 Msa0554410:CDS 40.0%
! GTTAAGATGATGGTTACCTC+AGG - chr4_1:51648764-51648783 None:intergenic 40.0%
GTTCCTTAACATGTGCCTTG+AGG + chr4_1:51644980-51644999 Msa0554410:five_prime_UTR 45.0%
! AAAGGAGCTTGCAGAAGTGT+GGG + chr4_1:51645436-51645455 Msa0554410:intron 45.0%
! GAGGAGAAACGTGGATTGAT+AGG - chr4_1:51646646-51646665 None:intergenic 45.0%
TCCACGTTTCTCCTCCATAA+TGG + chr4_1:51646651-51646670 Msa0554410:CDS 45.0%
ACCATTATGGAGGAGAAACG+TGG - chr4_1:51646655-51646674 None:intergenic 45.0%
GGAACGTGCATATGATCTTC+AGG - chr4_1:51646852-51646871 None:intergenic 45.0%
ACCACAAGACAAACCCCTTT+GGG + chr4_1:51646953-51646972 Msa0554410:CDS 45.0%
GTTCCTTCAGCATTGCTTGT+TGG - chr4_1:51646999-51647018 None:intergenic 45.0%
! CTTCATCATGCACTTGGTGA+TGG + chr4_1:51647032-51647051 Msa0554410:CDS 45.0%
!! TGGTGATGGTTACTCTCTCA+TGG + chr4_1:51647046-51647065 Msa0554410:CDS 45.0%
! GGTGATGGTTACTCTCTCAT+GGG + chr4_1:51647047-51647066 Msa0554410:CDS 45.0%
! AAGTGTGATGGTTTGCGTGA+AGG - chr4_1:51647128-51647147 None:intergenic 45.0%
GCTCCATCCAAAATCAGAGA+AGG - chr4_1:51647213-51647232 None:intergenic 45.0%
GACACCTATATGGAATGGTG+AGG + chr4_1:51647265-51647284 Msa0554410:CDS 45.0%
CCTTCCTCACCATTCCATAT+AGG - chr4_1:51647272-51647291 None:intergenic 45.0%
CCTATATGGAATGGTGAGGA+AGG + chr4_1:51647269-51647288 Msa0554410:CDS 45.0%
CAACATTAGAGAGGGAGAGT+TGG + chr4_1:51647594-51647613 Msa0554410:intron 45.0%
ACATTAGAGAGGGAGAGTTG+GGG + chr4_1:51647596-51647615 Msa0554410:intron 45.0%
ATGTAACCAACCCCACTTAG+TGG + chr4_1:51647828-51647847 Msa0554410:intron 45.0%
TGTAACCAACCCCACTTAGT+GGG + chr4_1:51647829-51647848 Msa0554410:intron 45.0%
CAACCTTATCCCACTAAGTG+GGG - chr4_1:51647841-51647860 None:intergenic 45.0%
CCAACCTTATCCCACTAAGT+GGG - chr4_1:51647842-51647861 None:intergenic 45.0%
ACCAACCTTATCCCACTAAG+TGG - chr4_1:51647843-51647862 None:intergenic 45.0%
ACTAAGCAACACCAATCCTG+TGG - chr4_1:51648277-51648296 None:intergenic 45.0%
AGACAGGCCTTGCTTAACTT+GGG - chr4_1:51648399-51648418 None:intergenic 45.0%
TAGACAGGCCTTGCTTAACT+TGG - chr4_1:51648400-51648419 None:intergenic 45.0%
! CTCTAAGGGGTTAGATAGAC+AGG - chr4_1:51648415-51648434 None:intergenic 45.0%
ATCCAATTTGATTGGGCCAG+TGG + chr4_1:51648679-51648698 Msa0554410:CDS 45.0%
TTCCACTGGCCCAATCAAAT+TGG - chr4_1:51648684-51648703 None:intergenic 45.0%
TTGGCAAACCATCCTGTGAA+AGG + chr4_1:51648713-51648732 Msa0554410:CDS 45.0%
AGTACAAGCCTTTCACAGGA+TGG - chr4_1:51648724-51648743 None:intergenic 45.0%
!!! AATTTTATACATATAATAAA+GGG + chr4_1:51644827-51644846 Msa0554410:five_prime_UTR 5.0%
!!! TTTTATTTATAAATCAAATA+CGG + chr4_1:51645145-51645164 Msa0554410:five_prime_UTR 5.0%
! TGCCCTAAGGGCACATGTTA+AGG + chr4_1:51644863-51644882 Msa0554410:five_prime_UTR 50.0%
TGCCCTCAAGGCACATGTTA+AGG - chr4_1:51644986-51645005 None:intergenic 50.0%
CAAAGGAGCTTGCAGAAGTG+TGG + chr4_1:51645435-51645454 Msa0554410:intron 50.0%
! AAGGAGCTTGCAGAAGTGTG+GGG + chr4_1:51645437-51645456 Msa0554410:intron 50.0%
CACCACAAGACAAACCCCTT+TGG + chr4_1:51646952-51646971 Msa0554410:CDS 50.0%
TCCCAAAGGGGTTTGTCTTG+TGG - chr4_1:51646957-51646976 None:intergenic 50.0%
CTTATCCCACTAAGTGGGGT+TGG - chr4_1:51647837-51647856 None:intergenic 50.0%
CAACCCCACTTAGTGGGATA+AGG + chr4_1:51647835-51647854 Msa0554410:intron 50.0%
CCCACTTAGTGGGATAAGGT+TGG + chr4_1:51647839-51647858 Msa0554410:intron 50.0%
!!! AGAGAGGACTGGTTTTCGAG+CGG - chr4_1:51647949-51647968 None:intergenic 50.0%
CCATTAGGCTTAGAGAGGAC+TGG - chr4_1:51647960-51647979 None:intergenic 50.0%
CCAGTCCTCTCTAAGCCTAA+TGG + chr4_1:51647957-51647976 Msa0554410:intron 50.0%
! GACAGGCCTTGCTTAACTTG+GGG - chr4_1:51648398-51648417 None:intergenic 50.0%
! GGATGGTTTGCCAAAGCCAT+AGG - chr4_1:51648707-51648726 None:intergenic 50.0%
TACAATGACAGGTGGACCTG+AGG + chr4_1:51648745-51648764 Msa0554410:CDS 50.0%
! ACAGAGCCGGTTAGTCCAAG+TGG + chr4_1:51646511-51646530 Msa0554410:CDS 55.0%
GATTGGGCCAGTGGAACCTA+TGG + chr4_1:51648688-51648707 Msa0554410:CDS 55.0%
GCCAGTGGAACCTATGGCTT+TGG + chr4_1:51648694-51648713 Msa0554410:CDS 55.0%
GCCAAAGCCATAGGTTCCAC+TGG - chr4_1:51648698-51648717 None:intergenic 55.0%
! GAGCTTGCAGAAGTGTGGGG+TGG + chr4_1:51645440-51645459 Msa0554410:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 51644758 51648961 51644758 ID=Msa0554410;Name=Msa0554410
chr4_1 mRNA 51644758 51648961 51644758 ID=Msa0554410-mRNA-1;Parent=Msa0554410;Name=Msa0554410-mRNA-1;_AED=0.39;_eAED=0.39;_QI=713|1|1|1|0.75|0.6|5|171|423
chr4_1 exon 51644758 51645283 51644758 ID=Msa0554410-mRNA-1:exon:14833;Parent=Msa0554410-mRNA-1
chr4_1 exon 51646303 51646672 51646303 ID=Msa0554410-mRNA-1:exon:14834;Parent=Msa0554410-mRNA-1
chr4_1 exon 51646801 51647373 51646801 ID=Msa0554410-mRNA-1:exon:14835;Parent=Msa0554410-mRNA-1
chr4_1 exon 51648186 51648539 51648186 ID=Msa0554410-mRNA-1:exon:14836;Parent=Msa0554410-mRNA-1
chr4_1 exon 51648629 51648961 51648629 ID=Msa0554410-mRNA-1:exon:14837;Parent=Msa0554410-mRNA-1
chr4_1 five_prime_UTR 51644758 51645283 51644758 ID=Msa0554410-mRNA-1:five_prime_utr;Parent=Msa0554410-mRNA-1
chr4_1 five_prime_UTR 51646303 51646489 51646303 ID=Msa0554410-mRNA-1:five_prime_utr;Parent=Msa0554410-mRNA-1
chr4_1 CDS 51646490 51646672 51646490 ID=Msa0554410-mRNA-1:cds;Parent=Msa0554410-mRNA-1
chr4_1 CDS 51646801 51647373 51646801 ID=Msa0554410-mRNA-1:cds;Parent=Msa0554410-mRNA-1
chr4_1 CDS 51648186 51648539 51648186 ID=Msa0554410-mRNA-1:cds;Parent=Msa0554410-mRNA-1
chr4_1 CDS 51648629 51648790 51648629 ID=Msa0554410-mRNA-1:cds;Parent=Msa0554410-mRNA-1
chr4_1 three_prime_UTR 51648791 51648961 51648791 ID=Msa0554410-mRNA-1:three_prime_utr;Parent=Msa0554410-mRNA-1
Gene Sequence

>Msa0554410

ATGGACAACTTTGAATATGTAACAGAGCCGGTTAGTCCAAGTGGACAATACTTTAACACACCACCCCTATGTTCATATGTTTTCGGATTTTTGGAATCACAAATTCCAATTGATGATTCTCAAACTATGTATTTGTTCCAACATGTCTTCTTACCTATCAATCCACGTTTCTCCTCCATAATGGTGAGAGACAAAGATGGCAAAATGAAATGGAAAAAGGTAGAGGTGAAGCCTGAAGATCATATGCACGTTCCAATATTCCCAAAAAGTGAATCAATTGAATTGTATGATCAATATTTTGATGATTATGTGTCAAAGATTATGATGGAAAGAACACCACAAGACAAACCCCTTTGGGAAATCCATTTGATTAAATATCCAACAAGCAATGCTGAAGGAACTTTGATATTCAAACTTCATCATGCACTTGGTGATGGTTACTCTCTCATGGGTGCTCTTCTATCTTGTCTACAAAGAGCTGATGATCCTTCTCTTCCTCTATCTTTTCCTTCACGCAAACCATCACACTTGTTATCTCCAAAGAAGGGCTTTTTCAAGTGGTTCCCTTCAACCATATTCTCCTTTTTCAATTCCTTCTCTGATTTTGGATGGAGCATAGCCAAAAGCTCAATGATTAAAGATGACAAGACACCTATATGGAATGGTGAGGAAGGAGTTGAGTCTCAGCCTTGTGTACTATCAAACCTATCATTCTCTCTTGATGAAATCAAAACAATCAAGTCTAAGCTTGGAGTGACAATAAATGATGTGATTACTGGGGTCATTTTCTATGGAATTAGGCTATACATGCAAGAAATGGACAAAAAGGCAAGAACATCAAATTCCACAGGATTGGTGTTGCTTAGTACTAGGAATATTGGAAGTTACCAATCAATTCAAGAAATGACAAAGGCTGATTCAAAATCTCCTTGGGGGAACCATATTTCTTTCTTACATGTATCAATCCCCAAGTTAAGCAAGGCCTGTCTATCTAACCCCTTAGAGTTTATTTGGAAAGCACAAAAAATAATCAAGAGGAAGAGAAATACTTTCACTGTTTTTCTCATTGAATGGCTCTTAGATATGGAGCTGAAATTAAGAGGACATGAGGCAGTTGCTAAACATATCTATGGAACATTGAGAAATTCAAGTGTTGTCATATCCAATTTGATTGGGCCAGTGGAACCTATGGCTTTGGCAAACCATCCTGTGAAAGGCTTGTACTTTACAATGACAGGTGGACCTGAGGTAACCATCATCTTAACTCTCTAG

Protein sequence

>Msa0554410

MDNFEYVTEPVSPSGQYFNTPPLCSYVFGFLESQIPIDDSQTMYLFQHVFLPINPRFSSIMVRDKDGKMKWKKVEVKPEDHMHVPIFPKSESIELYDQYFDDYVSKIMMERTPQDKPLWEIHLIKYPTSNAEGTLIFKLHHALGDGYSLMGALLSCLQRADDPSLPLSFPSRKPSHLLSPKKGFFKWFPSTIFSFFNSFSDFGWSIAKSSMIKDDKTPIWNGEEGVESQPCVLSNLSFSLDEIKTIKSKLGVTINDVITGVIFYGIRLYMQEMDKKARTSNSTGLVLLSTRNIGSYQSIQEMTKADSKSPWGNHISFLHVSIPKLSKACLSNPLEFIWKAQKIIKRKRNTFTVFLIEWLLDMELKLRGHEAVAKHIYGTLRNSSVVISNLIGPVEPMALANHPVKGLYFTMTGGPEVTIILTL*