AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1038580

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1038580 MtrunA17_Chr7g0273781 89.542 459 32 1 1 443 34 492 0.0 856
Msa1038580 MtrunA17_Chr7g0273791 88.158 456 38 1 1 440 1 456 0.0 837
Msa1038580 MtrunA17_Chr7g0273731 78.652 445 79 1 1 429 84 528 0.0 742
Msa1038580 MtrunA17_Chr5g0433641 75.652 460 95 2 1 443 1 460 0.0 721
Msa1038580 MtrunA17_Chr7g0273761 75.758 462 93 4 1 443 372 833 0.0 721
Msa1038580 MtrunA17_Chr7g0273761 73.463 309 81 1 131 438 32 340 5.60e-165 485
Msa1038580 MtrunA17_Chr7g0273721 72.511 462 108 4 1 443 1 462 0.0 698
Msa1038580 MtrunA17_Chr1g0165671 55.246 467 178 7 1 443 18 477 0.0 533
Msa1038580 MtrunA17_Chr1g0165681 50.783 447 198 6 3 430 2 445 1.85e-165 473
Msa1038580 MtrunA17_Chr1g0165661 50.435 460 206 6 3 443 2 458 2.24e-165 473
Msa1038580 MtrunA17_Chr1g0191081 54.157 445 183 5 3 429 11 452 5.65e-162 464
Msa1038580 MtrunA17_Chr1g0165711 48.156 461 174 9 3 443 2 417 1.06e-141 411
Msa1038580 MtrunA17_Chr7g0273701 74.138 174 45 0 270 443 1 174 1.76e-92 277
Msa1038580 MtrunA17_Chr6g0471381 51.984 252 111 5 182 428 6 252 8.26e-85 261
Msa1038580 MtrunA17_Chr7g0273741 82.576 132 23 0 1 132 1 132 6.86e-75 231
Msa1038580 MtrunA17_Chr3g0098961 77.273 132 30 0 1 132 4 135 9.76e-69 216
Msa1038580 MtrunA17_Chr6g0471971 46.862 239 95 6 147 379 2 214 2.62e-62 201
Msa1038580 MtrunA17_Chr3g0132001 30.211 427 267 9 10 417 14 428 7.06e-62 207
Msa1038580 MtrunA17_Chr8g0386141 30.206 437 265 12 8 420 5 425 2.42e-59 200
Msa1038580 MtrunA17_Chr6g0471371 65.385 130 45 0 3 132 2 131 1.22e-57 187
Msa1038580 MtrunA17_Chr7g0224391 30.548 383 239 7 14 376 20 395 2.93e-56 192
Msa1038580 MtrunA17_Chr8g0353421 61.417 127 49 0 3 129 2 128 4.77e-56 181
Msa1038580 MtrunA17_Chr1g0165741 63.846 130 47 0 3 132 2 131 6.19e-55 179
Msa1038580 MtrunA17_Chr7g0273691 78.351 97 20 1 150 245 1 97 3.58e-48 160
Msa1038580 MtrunA17_Chr3g0141851 32.061 393 225 13 13 376 14 393 5.52e-47 168
Msa1038580 MtrunA17_Chr2g0334001 27.880 434 276 12 17 424 10 432 1.43e-44 160
Msa1038580 MtrunA17_Chr2g0306321 28.571 434 274 14 18 419 26 455 3.57e-44 160
Msa1038580 MtrunA17_Chr4g0027071 27.991 443 274 14 17 422 19 453 2.20e-42 155
Msa1038580 MtrunA17_Chr4g0001861 28.117 409 252 13 42 421 34 429 3.96e-41 151
Msa1038580 MtrunA17_Chr7g0270771 30.640 297 152 9 6 275 1 270 1.12e-39 143
Msa1038580 MtrunA17_Chr6g0471891 40.314 191 86 3 216 404 1 165 6.06e-39 140
Msa1038580 MtrunA17_Chr8g0371821 27.073 410 260 14 36 419 28 424 4.61e-36 137
Msa1038580 MtrunA17_Chr2g0283361 30.240 334 205 10 60 370 53 381 1.12e-33 131
Msa1038580 MtrunA17_Chr3g0113821 27.889 398 250 11 9 376 4 394 1.54e-33 130
Msa1038580 MtrunA17_Chr3g0106691 29.003 331 209 7 17 323 63 391 1.47e-31 126
Msa1038580 MtrunA17_Chr2g0311401 28.197 305 198 8 132 424 7 302 3.26e-30 119
Msa1038580 MtrunA17_Chr4g0072041 25.328 458 281 16 9 421 15 456 7.53e-30 120
Msa1038580 MtrunA17_Chr6g0470591 25.815 399 252 15 64 424 70 462 3.15e-29 119
Msa1038580 MtrunA17_Chr3g0087401 24.455 413 247 11 18 378 10 409 7.07e-29 117
Msa1038580 MtrunA17_Chr4g0054081 24.711 433 265 14 36 421 34 452 5.07e-28 115
Msa1038580 MtrunA17_Chr3g0106721 27.885 312 190 7 43 323 41 348 1.93e-27 114
Msa1038580 MtrunA17_Chr3g0106661 27.047 403 237 13 17 373 17 408 2.03e-27 114
Msa1038580 MtrunA17_Chr7g0253501 28.532 361 210 15 17 338 9 360 4.45e-27 113
Msa1038580 MtrunA17_Chr1g0165721 51.020 98 47 1 331 427 1 98 4.92e-27 104
Msa1038580 MtrunA17_Chr1g0165731 44.037 109 57 3 147 253 2 108 1.60e-25 100
Msa1038580 MtrunA17_Chr7g0253541 24.729 461 275 19 18 423 12 455 6.70e-25 106
Msa1038580 MtrunA17_Chr3g0106711 34.043 188 102 5 17 182 17 204 1.31e-24 101
Msa1038580 MtrunA17_Chr7g0253531 27.298 359 213 15 17 336 9 358 1.63e-24 105
Msa1038580 MtrunA17_Chr5g0442691 24.352 386 245 13 62 405 86 466 1.39e-23 103
Msa1038580 MtrunA17_Chr5g0442701 24.611 386 244 13 62 405 63 443 6.79e-23 100
Msa1038580 MtrunA17_Chr3g0106761 28.669 293 180 9 70 337 19 307 5.93e-22 97.4
Msa1038580 MtrunA17_Chr5g0442721 24.304 395 247 13 62 412 64 450 8.31e-22 97.4
Msa1038580 MtrunA17_Chr3g0106741 30.142 282 172 9 79 337 59 338 1.41e-21 96.7
Msa1038580 MtrunA17_Chr7g0273681 92.683 41 3 0 92 132 1 41 1.08e-20 85.1
Msa1038580 MtrunA17_Chr7g0273671 90.698 43 4 0 1 43 1 43 1.86e-20 84.3
Msa1038580 MtrunA17_Chr3g0095731 24.665 373 233 12 46 375 46 413 2.51e-20 93.2
Msa1038580 MtrunA17_Chr3g0095721 23.932 351 226 9 62 374 69 416 6.66e-20 92.0
Msa1038580 MtrunA17_Chr4g0004691 30.539 167 92 4 20 169 14 173 2.53e-19 85.5
Msa1038580 MtrunA17_Chr7g0252731 26.608 342 188 12 65 374 70 380 8.93e-19 88.2
Msa1038580 MtrunA17_Chr3g0134091 25.285 439 264 18 24 423 30 443 1.91e-18 87.4
Msa1038580 MtrunA17_Chr5g0408911 23.544 412 266 14 8 383 16 414 8.26e-18 85.5
Msa1038580 MtrunA17_Chr3g0134121 24.350 423 271 16 25 414 31 437 3.13e-17 84.0
Msa1038580 MtrunA17_Chr3g0123061 22.573 443 275 21 10 422 5 409 7.15e-17 82.4
Msa1038580 MtrunA17_Chr7g0235531 22.284 359 236 11 17 340 11 361 1.78e-16 81.3
Msa1038580 MtrunA17_Chr3g0134111 23.640 478 284 19 1 427 1 448 1.54e-15 78.6
Msa1038580 MtrunA17_Chr3g0134061 23.529 442 283 16 24 424 29 456 1.88e-15 78.2
Msa1038580 MtrunA17_Chr5g0438701 21.883 393 249 13 16 374 9 377 4.48e-15 77.0
Msa1038580 MtrunA17_Chr3g0113181 23.222 478 286 18 4 423 9 463 8.83e-15 76.3
Msa1038580 MtrunA17_Chr3g0125001 21.739 437 274 17 24 424 25 429 2.31e-14 74.7
Msa1038580 MtrunA17_Chr8g0376891 27.879 165 99 4 16 164 9 169 3.26e-13 71.2
Msa1038580 MtrunA17_Chr5g0414431 57.143 56 19 1 52 107 2 52 5.44e-13 63.5
Msa1038580 MtrunA17_Chr8g0376911 21.930 456 267 17 16 422 9 424 6.43e-13 70.5
Msa1038580 MtrunA17_Chr3g0106631 27.922 154 104 3 132 280 2 153 2.79e-12 64.7
Msa1038580 MtrunA17_Chr8g0376901 27.273 165 100 4 16 164 9 169 5.21e-12 67.4
Msa1038580 MtrunA17_Chr3g0134041 22.756 479 284 20 1 427 1 445 6.49e-12 67.4
Msa1038580 MtrunA17_Chr8g0374641 21.739 437 263 17 24 415 30 432 9.79e-12 66.6
Msa1038580 MtrunA17_Chr3g0134071 22.676 441 265 18 1 388 1 418 1.18e-11 66.6
Msa1038580 MtrunA17_Chr2g0278481 22.727 264 165 9 17 259 24 269 1.60e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1038580 AT5G17540.1 45.043 464 228 8 3 443 2 461 9.00e-134 393
Msa1038580 AT3G03480.1 45.946 444 215 8 2 425 11 449 5.22e-125 370
Msa1038580 AT3G48720.1 29.841 439 275 11 1 419 1 426 2.84e-61 205
Msa1038580 AT5G41040.2 30.653 398 247 8 1 376 8 398 2.33e-58 198
Msa1038580 AT5G41040.1 30.653 398 247 8 1 376 24 414 2.60e-58 198
Msa1038580 AT5G63560.1 30.886 395 240 9 3 376 2 384 7.15e-55 188
Msa1038580 AT1G27620.1 31.266 387 230 10 14 376 13 387 2.15e-47 169
Msa1038580 AT5G48930.1 27.021 433 272 13 17 419 10 428 1.69e-40 150
Msa1038580 AT1G03390.1 27.865 445 270 16 14 419 21 453 4.33e-39 147
Msa1038580 AT5G57840.1 28.319 452 274 14 10 426 3 439 1.14e-38 145
Msa1038580 AT2G19070.1 26.682 431 263 13 36 423 29 449 8.42e-36 137
Msa1038580 AT2G40230.1 28.389 391 237 13 17 376 12 390 2.98e-34 133
Msa1038580 AT3G62160.1 26.718 393 237 13 6 370 1 370 1.06e-33 131
Msa1038580 AT5G07080.1 27.451 408 248 14 3 373 7 403 3.23e-32 127
Msa1038580 AT1G28680.1 26.972 393 249 13 7 370 1 384 1.76e-31 125
Msa1038580 AT1G28680.2 27.397 365 228 12 7 343 1 356 3.07e-30 121
Msa1038580 AT3G47170.1 25.000 480 287 19 2 425 4 466 8.41e-29 118
Msa1038580 AT2G25150.1 26.884 398 235 14 16 373 19 400 2.22e-28 117
Msa1038580 AT1G65450.1 25.622 402 252 13 54 425 65 449 5.36e-27 112
Msa1038580 AT1G31490.1 25.000 368 228 12 41 377 38 388 1.76e-23 102
Msa1038580 AT2G23510.1 26.303 403 253 13 4 373 7 398 3.19e-23 102
Msa1038580 AT1G32910.1 24.176 364 233 12 63 393 63 416 1.14e-20 94.7
Msa1038580 AT3G26040.1 23.601 411 228 15 16 376 9 383 2.60e-20 93.2
Msa1038580 AT5G42830.1 26.049 453 266 19 14 423 16 442 3.63e-20 92.8
Msa1038580 AT1G78990.1 23.810 420 264 14 43 425 45 445 5.77e-20 92.4
Msa1038580 AT5G16410.1 22.581 341 226 12 65 376 91 422 8.50e-19 89.0
Msa1038580 AT5G07860.1 24.569 464 284 18 2 423 3 442 2.91e-18 87.0
Msa1038580 AT4G15390.1 23.128 454 284 16 5 419 3 430 9.24e-18 85.5
Msa1038580 AT4G15390.2 23.128 454 284 16 5 419 3 430 9.24e-18 85.5
Msa1038580 AT5G07850.1 24.726 457 282 20 2 415 3 440 1.95e-16 81.6
Msa1038580 AT5G23970.1 24.516 465 266 20 16 440 9 428 6.93e-15 76.6
Msa1038580 AT4G31910.1 22.283 368 236 12 47 370 46 407 1.84e-14 75.5
Msa1038580 AT3G50280.1 22.444 401 251 16 24 387 28 405 5.21e-13 70.9
Msa1038580 AT5G47950.1 22.931 423 273 13 16 414 12 405 5.34e-13 70.9

Find 124 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTCTTCCTTAATGGTATT+TGG 0.143670 7_1:-75489808 None:intergenic
CACTCGGTGTAAGATGATTT+TGG 0.236072 7_1:-75490476 None:intergenic
AGCAGTATCTTCTTCCTTAA+TGG 0.250041 7_1:-75489815 None:intergenic
GCATTCTGTGGCCGATCTTA+TGG 0.264577 7_1:+75490188 Msa1038580:CDS
GGCCGATCTTATGGTTATTA+AGG 0.274324 7_1:+75490197 Msa1038580:CDS
GTCCCACATAAGAATATAAA+TGG 0.280574 7_1:+75490369 Msa1038580:CDS
AAATTTGTTCGTATTCAAAA+TGG 0.285497 7_1:-75489780 None:intergenic
ATCCATTAGCGGGAAGGATT+AGG 0.301190 7_1:+75487095 Msa1038580:CDS
GCATGTCTAAGTACCTTAAC+AGG 0.306189 7_1:-75487046 None:intergenic
TCCCTAATCCTTCCCGCTAA+TGG 0.306887 7_1:-75487097 None:intergenic
CCATTCAACCTGTGTGGAAT+AGG 0.307886 7_1:+75489716 Msa1038580:CDS
CATTGTATGGTTCCAATTCA+TGG 0.325987 7_1:-75489623 None:intergenic
TCGGCACTTGTTGGATATTA+CGG 0.332866 7_1:+75490048 Msa1038580:CDS
TCTTCAGAGGGCAAACAAAT+TGG 0.336728 7_1:-75490411 None:intergenic
GGGTCTTTCTCTACCATTGA+TGG 0.358439 7_1:-75487025 None:intergenic
CCTGCAGTGGTGACGGCCGC+CGG 0.366152 7_1:-75490087 None:intergenic
CATAGCCACGCTTCGTCTCT+TGG 0.377968 7_1:+75489876 Msa1038580:CDS
GATGATAGTTTAACTTCATA+AGG 0.381299 7_1:-75486938 None:intergenic
GTGAATTTCGGATGGGGTGA+AGG 0.381692 7_1:+75490288 Msa1038580:CDS
CATGACTGCATGGGCAGAAA+TGG 0.383185 7_1:+75489672 Msa1038580:CDS
TCCATTAGCGGGAAGGATTA+GGG 0.385445 7_1:+75487096 Msa1038580:CDS
ATTCTTATGTGGGACGATAT+AGG 0.390250 7_1:-75490361 None:intergenic
CTCTAAAGAAGAAAGATTGA+TGG 0.391556 7_1:-75489846 None:intergenic
TGGGGTGAAGGGGTGTATGG+TGG 0.393273 7_1:+75490300 Msa1038580:CDS
CTCAAAAGCACTGCAGTTAG+AGG 0.400279 7_1:+75489963 Msa1038580:CDS
TCACGACGGTGCAAACTATA+AGG 0.401279 7_1:-75490520 None:intergenic
GGGTGATGGGCGCAAGTTGA+TGG 0.402242 7_1:+75487120 Msa1038580:CDS
GAGGTTTAACGCTAACAATT+CGG 0.409376 7_1:+75490029 Msa1038580:CDS
AAGCTTTGTGGAAACCCATT+TGG 0.411357 7_1:+75490111 Msa1038580:CDS
AACTCCACTGCATAACCAAA+TGG 0.411556 7_1:-75490126 None:intergenic
GGTTCATAGTGGCCATGAAT+TGG 0.412673 7_1:+75489611 Msa1038580:CDS
GCTAACAATTCGGCACTTGT+TGG 0.414011 7_1:+75490039 Msa1038580:CDS
AGGCTCTCAGAAGTGAATTT+CGG 0.414115 7_1:+75490276 Msa1038580:CDS
GATGTAACACTTGATCAATT+TGG 0.419821 7_1:+75487187 Msa1038580:CDS
TCTCCATTTATATTCTTATG+TGG 0.422113 7_1:-75490372 None:intergenic
GGATGGGGTGAAGGGGTGTA+TGG 0.426779 7_1:+75490297 Msa1038580:CDS
GAAGCTGGTGGCACCAACTC+TGG 0.429919 7_1:-75486908 None:intergenic
GGTGTTTATTTACAACTGTA+AGG 0.432833 7_1:+75490223 Msa1038580:CDS
CATTCAACCTGTGTGGAATA+GGG 0.435556 7_1:+75489717 Msa1038580:CDS
CCGGCGGCCGTCACCACTGC+AGG 0.441835 7_1:+75490087 Msa1038580:CDS
CCTATTCCACACAGGTTGAA+TGG 0.443311 7_1:-75489716 None:intergenic
GAACATCGTATAGGAGTTGA+TGG 0.458053 7_1:-75487240 None:intergenic
GGAGTTGCAAAAGGTGGGGC+TGG 0.459644 7_1:+75490321 Msa1038580:CDS
CTCCATTTATATTCTTATGT+GGG 0.466477 7_1:-75490371 None:intergenic
ACCACTGCAGGGAAGCTTTG+TGG 0.467325 7_1:+75490099 Msa1038580:CDS
CAGCTGCATCACCCATTGTA+TGG 0.471746 7_1:-75489636 None:intergenic
TGAATTTCGGATGGGGTGAA+GGG 0.480104 7_1:+75490289 Msa1038580:CDS
GTGCATTGACGAAGGTGAAA+TGG 0.485395 7_1:-75489901 None:intergenic
TCATAAGGAGTGGGTGAAGC+TGG 0.488042 7_1:-75486923 None:intergenic
GTGGAATAGGGAGATTCTAA+TGG 0.500842 7_1:+75489729 Msa1038580:CDS
CTATCGTCACGAACCATCAA+TGG 0.501354 7_1:+75487012 Msa1038580:CDS
CTGAGCCTGGAACATCGTAT+AGG 0.505911 7_1:-75487249 None:intergenic
CTGCAGTGGTGACGGCCGCC+GGG 0.506752 7_1:-75490086 None:intergenic
AGTTGATGGACGCAAGGGAA+TGG 0.509518 7_1:-75487226 None:intergenic
TCTCAGATTTGACTCGTGCT+AGG 0.509741 7_1:+75490256 Msa1038580:CDS
GTGTATGGTGGAGTTGCAAA+AGG 0.512005 7_1:+75490312 Msa1038580:CDS
GGAAGGATTAGGGAGGGTGA+TGG 0.514869 7_1:+75487106 Msa1038580:CDS
GTGTATTACTATCCATTAGC+GGG 0.518761 7_1:+75487085 Msa1038580:CDS
TATGGTGGAGTTGCAAAAGG+TGG 0.519898 7_1:+75490315 Msa1038580:CDS
ACTCCACTGCATAACCAAAT+GGG 0.532239 7_1:-75490125 None:intergenic
GAAGGATTAGGGAGGGTGAT+GGG 0.536123 7_1:+75487107 Msa1038580:CDS
AGTTTAACTTCATAAGGAGT+GGG 0.537001 7_1:-75486932 None:intergenic
AAGGTAGACATCACAAAACT+AGG 0.537832 7_1:-75490501 None:intergenic
AAGCTTCCCTGCAGTGGTGA+CGG 0.539271 7_1:-75490094 None:intergenic
CATACAATGGGTGATGCAGC+TGG 0.540298 7_1:+75489637 Msa1038580:CDS
TCCACAAAGCTTCCCTGCAG+TGG 0.542424 7_1:-75490100 None:intergenic
GTTAAACCTCGAGCGTGCAT+TGG 0.546237 7_1:-75490016 None:intergenic
TTCCTTAATAACCATAAGAT+CGG 0.546586 7_1:-75490199 None:intergenic
ATCTTATGGTTATTAAGGAA+CGG 0.549803 7_1:+75490202 Msa1038580:CDS
ATGAATTGGAACCATACAAT+GGG 0.552002 7_1:+75489625 Msa1038580:CDS
GCGGAGGTGCCAACCAGAGT+TGG 0.552570 7_1:+75486895 Msa1038580:CDS
GGTAGAGAAAGACCCTGTTA+AGG 0.555434 7_1:+75487033 Msa1038580:CDS
ATGGTGGAGTTGCAAAAGGT+GGG 0.555845 7_1:+75490316 Msa1038580:CDS
GGGACGATATAGGTTGATCC+AGG 0.558026 7_1:-75490351 None:intergenic
GAATTTCGGATGGGGTGAAG+GGG 0.559669 7_1:+75490290 Msa1038580:CDS
CTCAGAAGTGAATTTCGGAT+GGG 0.565788 7_1:+75490281 Msa1038580:CDS
TGCCCTCTGAAGATATGAAG+AGG 0.566120 7_1:+75490421 Msa1038580:CDS
TGAGACAATTCATGACTGCA+TGG 0.568023 7_1:+75489662 Msa1038580:CDS
AAGTTGATGGTGGATCGTAC+TGG 0.574743 7_1:+75487133 Msa1038580:CDS
CTGGTGGCACCAACTCTGGT+TGG 0.575153 7_1:-75486904 None:intergenic
GAGACAATTCATGACTGCAT+GGG 0.576060 7_1:+75489663 Msa1038580:CDS
TCTCAGAAGTGAATTTCGGA+TGG 0.578397 7_1:+75490280 Msa1038580:CDS
TAGTTTAACTTCATAAGGAG+TGG 0.579675 7_1:-75486933 None:intergenic
GTCACACGTCTCAAGTGTGG+TGG 0.581788 7_1:+75489589 Msa1038580:CDS
TTCCACACAGGTTGAATGGA+AGG 0.582573 7_1:-75489712 None:intergenic
AAAGAGTTTGATGAGATGCT+TGG 0.585135 7_1:+75490450 Msa1038580:CDS
AAACCTCTTCATATCTTCAG+AGG 0.585787 7_1:-75490424 None:intergenic
ATTACTATCCATTAGCGGGA+AGG 0.588538 7_1:+75487089 Msa1038580:CDS
TATAGGAGTTGATGGACGCA+AGG 0.588692 7_1:-75487232 None:intergenic
ATGGTGGATCGTACTGGTGA+AGG 0.594235 7_1:+75487139 Msa1038580:CDS
TGACGATAGATAAATATGAC+AGG 0.601628 7_1:-75486998 None:intergenic
ATCACAAAACTAGGAGCACT+CGG 0.604510 7_1:-75490492 None:intergenic
TGTGTATTACTATCCATTAG+CGG 0.605394 7_1:+75487084 Msa1038580:CDS
AACCTCTTCATATCTTCAGA+GGG 0.608993 7_1:-75490423 None:intergenic
AAACCCATTTGGTTATGCAG+TGG 0.611003 7_1:+75490122 Msa1038580:CDS
TGATGGGCGCAAGTTGATGG+TGG 0.614524 7_1:+75487123 Msa1038580:CDS
TCAGAAGTGAATTTCGGATG+GGG 0.621466 7_1:+75490282 Msa1038580:CDS
TGATGGACGCAAGGGAATGG+AGG 0.621955 7_1:-75487223 None:intergenic
CAAGTGTGGTGGGTTCATAG+TGG 0.622481 7_1:+75489600 Msa1038580:CDS
TCACACGTCTCAAGTGTGGT+GGG 0.628748 7_1:+75489590 Msa1038580:CDS
ATTAAAAGCTGAAGTTACAG+AGG 0.635766 7_1:+75490158 Msa1038580:CDS
CATGAATTGGAACCATACAA+TGG 0.637861 7_1:+75489624 Msa1038580:CDS
GCAGTTAGAGGCAAATGAAG+AGG 0.640371 7_1:+75489975 Msa1038580:CDS
TAAGGAGTGGGTGAAGCTGG+TGG 0.642261 7_1:-75486920 None:intergenic
GGTTGCATGTAATGCGTGGA+GGG 0.643184 7_1:-75489759 None:intergenic
GACCTTCCATTCAACCTGTG+TGG 0.647046 7_1:+75489710 Msa1038580:CDS
AGAATCTCCCTATTCCACAC+AGG 0.648794 7_1:-75489724 None:intergenic
TCTGACATAGATGATCAAGA+AGG 0.650798 7_1:+75486959 Msa1038580:CDS
ATAGGAGTTGATGGACGCAA+GGG 0.652176 7_1:-75487231 None:intergenic
CATGTCTAAGTACCTTAACA+GGG 0.657027 7_1:-75487045 None:intergenic
GCATCGCCAATGCACGCTCG+AGG 0.662333 7_1:+75490010 Msa1038580:CDS
CGGCGGCCGTCACCACTGCA+GGG 0.662454 7_1:+75490088 Msa1038580:CDS
CAGGTCACACGTCTCAAGTG+TGG 0.663378 7_1:+75489586 Msa1038580:intron
AGAGGAATACATGCATTCTG+TGG 0.672300 7_1:+75490176 Msa1038580:CDS
TGGAACCAAGAGACGAAGCG+TGG 0.675197 7_1:-75489881 None:intergenic
TGGTGGAGTTGCAAAAGGTG+GGG 0.679716 7_1:+75490317 Msa1038580:CDS
GCATGGGCAGAAATGGCTCG+AGG 0.681407 7_1:+75489679 Msa1038580:CDS
TGAAGTGATAAGATCGAATG+TGG 0.689533 7_1:-75489923 None:intergenic
AAATGGTTGCATGTAATGCG+TGG 0.690356 7_1:-75489763 None:intergenic
TTAGCGGGAAGGATTAGGGA+GGG 0.709484 7_1:+75487100 Msa1038580:CDS
ATTAGCGGGAAGGATTAGGG+AGG 0.709705 7_1:+75487099 Msa1038580:CDS
CGAATGTGGTGCATTGACGA+AGG 0.710870 7_1:-75489909 None:intergenic
TGGTTGCATGTAATGCGTGG+AGG 0.714540 7_1:-75489760 None:intergenic
CATCGTTAATGTTCACAGTG+CGG 0.743005 7_1:+75486876 Msa1038580:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAATAAAGGTTATAAAAT+TGG - chr7_1:75488289-75488308 None:intergenic 10.0%
!! CTATATATAAAGAAAATATA+TGG + chr7_1:75488942-75488961 Msa1038580:intron 10.0%
!!! TTGATTTTGATTAAAATTAT+AGG - chr7_1:75489149-75489168 None:intergenic 10.0%
!!! TTTCCATATATATTTTTTAG+AGG + chr7_1:75487601-75487620 Msa1038580:intron 15.0%
!!! AAACCTCTAAAAAATATATA+TGG - chr7_1:75487607-75487626 None:intergenic 15.0%
!!! TTTCTCTAAAATAAAATTGA+TGG - chr7_1:75487706-75487725 None:intergenic 15.0%
!!! CTTTTCAAAACAATTTAATA+AGG - chr7_1:75488141-75488160 None:intergenic 15.0%
!!! CTTATTAAATTGTTTTGAAA+AGG + chr7_1:75488139-75488158 Msa1038580:intron 15.0%
!!! TTGAAAAATATTTTTTGACA+AGG + chr7_1:75488226-75488245 Msa1038580:intron 15.0%
!! TGTAAATATAAAAACGTTAA+TGG - chr7_1:75488420-75488439 None:intergenic 15.0%
!! TCTTTATCTAATCAAATTAT+AGG + chr7_1:75488448-75488467 Msa1038580:intron 15.0%
!! AATCAAATTATAGGAAAAAA+CGG + chr7_1:75488457-75488476 Msa1038580:intron 15.0%
!!! TAAAAACCTCTTTTATAATT+AGG + chr7_1:75488647-75488666 Msa1038580:intron 15.0%
!!! AAAAACCTCTTTTATAATTA+GGG + chr7_1:75488648-75488667 Msa1038580:intron 15.0%
!!! TAAAGAAAATATATGGTTTT+TGG + chr7_1:75488949-75488968 Msa1038580:intron 15.0%
!!! AATTTGTTTAATAGCATAAT+TGG - chr7_1:75488990-75489009 None:intergenic 15.0%
!!! TTATAAGAATGATGTTATTT+TGG + chr7_1:75489013-75489032 Msa1038580:intron 15.0%
!!! TATAAGAATGATGTTATTTT+GGG + chr7_1:75489014-75489033 Msa1038580:intron 15.0%
!!! GTCAATTTTTAAAAAAAGTA+AGG - chr7_1:75489254-75489273 None:intergenic 15.0%
!! TATTAGATTTATATTATGAC+AGG + chr7_1:75489567-75489586 Msa1038580:intron 15.0%
!! GAAAAAAATAGTAAAAATCG+AGG - chr7_1:75487585-75487604 None:intergenic 20.0%
!!! CTTCAGTAACTATATTTTAA+TGG - chr7_1:75487632-75487651 None:intergenic 20.0%
!! TTCAATCATATAGATAACTT+TGG - chr7_1:75487677-75487696 None:intergenic 20.0%
!! AAGATGTATTCAATACAATT+TGG + chr7_1:75487750-75487769 Msa1038580:intron 20.0%
!!! ATTAGCTAGTTTTTAGATTT+TGG - chr7_1:75487784-75487803 None:intergenic 20.0%
!!! TTGATAGTTTTTTATCACAT+GGG - chr7_1:75487941-75487960 None:intergenic 20.0%
!! ATCAAATTATAGGAAAAAAC+GGG + chr7_1:75488458-75488477 Msa1038580:intron 20.0%
!! CAAAATCACAATAAAAGATA+AGG - chr7_1:75488881-75488900 None:intergenic 20.0%
!!! ATAAGAATGATGTTATTTTG+GGG + chr7_1:75489015-75489034 Msa1038580:intron 20.0%
!!! TTTAAAGCATGTGAAATATA+GGG - chr7_1:75489340-75489359 None:intergenic 20.0%
!! AACACCAATATATTATAATC+AGG + chr7_1:75489358-75489377 Msa1038580:intron 20.0%
!! TCAACCTGATTATAATATAT+TGG - chr7_1:75489365-75489384 None:intergenic 20.0%
!!! AAGTGCAAAACTTTTTAAAT+GGG - chr7_1:75489388-75489407 None:intergenic 20.0%
!!! TAAGTGCAAAACTTTTTAAA+TGG - chr7_1:75489389-75489408 None:intergenic 20.0%
!!! ATTCATATGTTTTCTTCAAA+TGG - chr7_1:75489437-75489456 None:intergenic 20.0%
!! TTGTAAACTTGTAATCAATT+CGG - chr7_1:75489522-75489541 None:intergenic 20.0%
!!! AAATTTGTTCGTATTCAAAA+TGG - chr7_1:75489783-75489802 None:intergenic 20.0%
!! GATGATAGTTTAACTTCATA+AGG - chr7_1:75486941-75486960 None:intergenic 25.0%
!!! GTCATTTTATGCTATTAACA+TGG - chr7_1:75487460-75487479 None:intergenic 25.0%
! CTAAAAACTAGCTAATAATG+AGG + chr7_1:75487788-75487807 Msa1038580:intron 25.0%
!!! GTTGATAGTTTTTTATCACA+TGG - chr7_1:75487942-75487961 None:intergenic 25.0%
!!! AACTCGTTTATTTTCAATGT+TGG - chr7_1:75488024-75488043 None:intergenic 25.0%
! ATTTGTGAAGTACATATTGA+AGG - chr7_1:75488047-75488066 None:intergenic 25.0%
! TCAATATGTACTTCACAAAT+TGG + chr7_1:75488047-75488066 Msa1038580:intron 25.0%
! TAATTTCTCATACCAAAAGT+TGG - chr7_1:75488346-75488365 None:intergenic 25.0%
! TCAAACCCTAATTATAAAAG+AGG - chr7_1:75488656-75488675 None:intergenic 25.0%
! TGTATTGTGAGTGAAATTTA+TGG + chr7_1:75488778-75488797 Msa1038580:intron 25.0%
! ATAAAAGATAAGGTTAGAGT+TGG - chr7_1:75488871-75488890 None:intergenic 25.0%
! CATTAACGCAATAAAAAAAG+CGG + chr7_1:75489218-75489237 Msa1038580:intron 25.0%
!! GTTTAAAGCATGTGAAATAT+AGG - chr7_1:75489341-75489360 None:intergenic 25.0%
!! AAGTAATTGTTTGAAACTGT+AGG - chr7_1:75489461-75489480 None:intergenic 25.0%
!! ATCTTATCACTTCATGTTTT+TGG + chr7_1:75489932-75489951 Msa1038580:CDS 25.0%
! TTCCTTAATAACCATAAGAT+CGG - chr7_1:75490202-75490221 None:intergenic 25.0%
! ATCTTATGGTTATTAAGGAA+CGG + chr7_1:75490202-75490221 Msa1038580:CDS 25.0%
! CTCCATTTATATTCTTATGT+GGG - chr7_1:75490374-75490393 None:intergenic 25.0%
! TCTCCATTTATATTCTTATG+TGG - chr7_1:75490375-75490394 None:intergenic 25.0%
! AGTTTAACTTCATAAGGAGT+GGG - chr7_1:75486935-75486954 None:intergenic 30.0%
! TAGTTTAACTTCATAAGGAG+TGG - chr7_1:75486936-75486955 None:intergenic 30.0%
TGACGATAGATAAATATGAC+AGG - chr7_1:75487001-75487020 None:intergenic 30.0%
TGTGTATTACTATCCATTAG+CGG + chr7_1:75487084-75487103 Msa1038580:CDS 30.0%
GATGTAACACTTGATCAATT+TGG + chr7_1:75487187-75487206 Msa1038580:CDS 30.0%
TTTGTAGAGACAAACAAATG+AGG - chr7_1:75487838-75487857 None:intergenic 30.0%
TGAGTTCATGAGCTTAATTT+GGG - chr7_1:75487999-75488018 None:intergenic 30.0%
ATGAGTTCATGAGCTTAATT+TGG - chr7_1:75488000-75488019 None:intergenic 30.0%
! TAAACCACTAAGTTTTTGCA+AGG + chr7_1:75488072-75488091 Msa1038580:intron 30.0%
! TTTTCCTTGCAAAAACTTAG+TGG - chr7_1:75488079-75488098 None:intergenic 30.0%
!! CAAAAGTTGGTATATGAAGA+AGG - chr7_1:75488333-75488352 None:intergenic 30.0%
! CTTCTTCATATACCAACTTT+TGG + chr7_1:75488331-75488350 Msa1038580:intron 30.0%
CAAACATTAACTTATTGACC+TGG + chr7_1:75488567-75488586 Msa1038580:intron 30.0%
! AAATTGACGTATTTTCGTAC+CGG + chr7_1:75489266-75489285 Msa1038580:intron 30.0%
AACTTGTAATCAATTCGGTT+TGG - chr7_1:75489517-75489536 None:intergenic 30.0%
ATGAATTGGAACCATACAAT+GGG + chr7_1:75489625-75489644 Msa1038580:CDS 30.0%
! TTTTTCGCCAAATACCATTA+AGG + chr7_1:75489801-75489820 Msa1038580:CDS 30.0%
TCTTCTTCCTTAATGGTATT+TGG - chr7_1:75489811-75489830 None:intergenic 30.0%
! CTCTAAAGAAGAAAGATTGA+TGG - chr7_1:75489849-75489868 None:intergenic 30.0%
ATTAAAAGCTGAAGTTACAG+AGG + chr7_1:75490158-75490177 Msa1038580:CDS 30.0%
GGTGTTTATTTACAACTGTA+AGG + chr7_1:75490223-75490242 Msa1038580:CDS 30.0%
GTCCCACATAAGAATATAAA+TGG + chr7_1:75490369-75490388 Msa1038580:CDS 30.0%
TCTGACATAGATGATCAAGA+AGG + chr7_1:75486959-75486978 Msa1038580:CDS 35.0%
CATGTCTAAGTACCTTAACA+GGG - chr7_1:75487048-75487067 None:intergenic 35.0%
GTGTATTACTATCCATTAGC+GGG + chr7_1:75487085-75487104 Msa1038580:CDS 35.0%
ATGACGTAAAATTCATCGAG+AGG + chr7_1:75487546-75487565 Msa1038580:intron 35.0%
!! GTGATGTTGATTTAGGATCT+TGG + chr7_1:75488589-75488608 Msa1038580:intron 35.0%
! ATGAGTATTGTATGTGCATC+CGG - chr7_1:75488735-75488754 None:intergenic 35.0%
AACGCAATAAAAAAAGCGGA+CGG + chr7_1:75489222-75489241 Msa1038580:intron 35.0%
AGCATGTGAAATATAGGGTT+TGG - chr7_1:75489335-75489354 None:intergenic 35.0%
TCAAATGGAGCATGGAAATA+AGG - chr7_1:75489422-75489441 None:intergenic 35.0%
! TGTTTTCTTCAAATGGAGCA+TGG - chr7_1:75489430-75489449 None:intergenic 35.0%
CATTGTATGGTTCCAATTCA+TGG - chr7_1:75489626-75489645 None:intergenic 35.0%
CATGAATTGGAACCATACAA+TGG + chr7_1:75489624-75489643 Msa1038580:CDS 35.0%
AGCAGTATCTTCTTCCTTAA+TGG - chr7_1:75489818-75489837 None:intergenic 35.0%
TGAAGTGATAAGATCGAATG+TGG - chr7_1:75489926-75489945 None:intergenic 35.0%
GAGGTTTAACGCTAACAATT+CGG + chr7_1:75490029-75490048 Msa1038580:CDS 35.0%
ATTCTTATGTGGGACGATAT+AGG - chr7_1:75490364-75490383 None:intergenic 35.0%
AACCTCTTCATATCTTCAGA+GGG - chr7_1:75490426-75490445 None:intergenic 35.0%
AAACCTCTTCATATCTTCAG+AGG - chr7_1:75490427-75490446 None:intergenic 35.0%
AAAGAGTTTGATGAGATGCT+TGG + chr7_1:75490450-75490469 Msa1038580:CDS 35.0%
AAGGTAGACATCACAAAACT+AGG - chr7_1:75490504-75490523 None:intergenic 35.0%
CATCGTTAATGTTCACAGTG+CGG + chr7_1:75486876-75486895 Msa1038580:CDS 40.0%
GCATGTCTAAGTACCTTAAC+AGG - chr7_1:75487049-75487068 None:intergenic 40.0%
ATTACTATCCATTAGCGGGA+AGG + chr7_1:75487089-75487108 Msa1038580:CDS 40.0%
GAACATCGTATAGGAGTTGA+TGG - chr7_1:75487243-75487262 None:intergenic 40.0%
!! TCGATAATTTGTTCTGAGCC+TGG - chr7_1:75487265-75487284 None:intergenic 40.0%
TGAACCTGTATCTGTCGAAT+GGG - chr7_1:75487294-75487313 None:intergenic 40.0%
TTGAACCTGTATCTGTCGAA+TGG - chr7_1:75487295-75487314 None:intergenic 40.0%
GTTACTGAAGTCATGTGCAT+AGG + chr7_1:75487642-75487661 Msa1038580:intron 40.0%
GGGCGTGATGTTACATAATT+TGG - chr7_1:75487921-75487940 None:intergenic 40.0%
!! GGGATCTATTGACTTTGAGT+TGG - chr7_1:75487979-75487998 None:intergenic 40.0%
! GTACTGATGTGATTGAAGCT+TGG - chr7_1:75488191-75488210 None:intergenic 40.0%
!! TGACCTGGTGATGTTGATTT+AGG + chr7_1:75488582-75488601 Msa1038580:intron 40.0%
GATCCTAAATCAACATCACC+AGG - chr7_1:75488588-75488607 None:intergenic 40.0%
AGTACGTATGCTTCAGAGTT+TGG - chr7_1:75488689-75488708 None:intergenic 40.0%
TATTGTATGTGCATCCGGTA+CGG - chr7_1:75488730-75488749 None:intergenic 40.0%
ACTGTACCTATGTGCAACAT+AGG + chr7_1:75489308-75489327 Msa1038580:intron 40.0%
TTTGGACCTATGTTGCACAT+AGG - chr7_1:75489317-75489336 None:intergenic 40.0%
TGAGACAATTCATGACTGCA+TGG + chr7_1:75489662-75489681 Msa1038580:CDS 40.0%
GAGACAATTCATGACTGCAT+GGG + chr7_1:75489663-75489682 Msa1038580:CDS 40.0%
CATTCAACCTGTGTGGAATA+GGG + chr7_1:75489717-75489736 Msa1038580:CDS 40.0%
GTGGAATAGGGAGATTCTAA+TGG + chr7_1:75489729-75489748 Msa1038580:CDS 40.0%
AAATGGTTGCATGTAATGCG+TGG - chr7_1:75489766-75489785 None:intergenic 40.0%
! TCGGCACTTGTTGGATATTA+CGG + chr7_1:75490048-75490067 Msa1038580:CDS 40.0%
! AAGCTTTGTGGAAACCCATT+TGG + chr7_1:75490111-75490130 Msa1038580:CDS 40.0%
AAACCCATTTGGTTATGCAG+TGG + chr7_1:75490122-75490141 Msa1038580:CDS 40.0%
ACTCCACTGCATAACCAAAT+GGG - chr7_1:75490128-75490147 None:intergenic 40.0%
AACTCCACTGCATAACCAAA+TGG - chr7_1:75490129-75490148 None:intergenic 40.0%
AGAGGAATACATGCATTCTG+TGG + chr7_1:75490176-75490195 Msa1038580:CDS 40.0%
GGCCGATCTTATGGTTATTA+AGG + chr7_1:75490197-75490216 Msa1038580:CDS 40.0%
AGGCTCTCAGAAGTGAATTT+CGG + chr7_1:75490276-75490295 Msa1038580:CDS 40.0%
TCTCAGAAGTGAATTTCGGA+TGG + chr7_1:75490280-75490299 Msa1038580:CDS 40.0%
CTCAGAAGTGAATTTCGGAT+GGG + chr7_1:75490281-75490300 Msa1038580:CDS 40.0%
TCAGAAGTGAATTTCGGATG+GGG + chr7_1:75490282-75490301 Msa1038580:CDS 40.0%
TCTTCAGAGGGCAAACAAAT+TGG - chr7_1:75490414-75490433 None:intergenic 40.0%
!!! CACTCGGTGTAAGATGATTT+TGG - chr7_1:75490479-75490498 None:intergenic 40.0%
!! ATCACAAAACTAGGAGCACT+CGG - chr7_1:75490495-75490514 None:intergenic 40.0%
CTATCGTCACGAACCATCAA+TGG + chr7_1:75487012-75487031 Msa1038580:CDS 45.0%
GGGTCTTTCTCTACCATTGA+TGG - chr7_1:75487028-75487047 None:intergenic 45.0%
GGTAGAGAAAGACCCTGTTA+AGG + chr7_1:75487033-75487052 Msa1038580:CDS 45.0%
ATCCATTAGCGGGAAGGATT+AGG + chr7_1:75487095-75487114 Msa1038580:CDS 45.0%
TCCATTAGCGGGAAGGATTA+GGG + chr7_1:75487096-75487115 Msa1038580:CDS 45.0%
!! AAGTTGATGGTGGATCGTAC+TGG + chr7_1:75487133-75487152 Msa1038580:CDS 45.0%
!! ATAGGAGTTGATGGACGCAA+GGG - chr7_1:75487234-75487253 None:intergenic 45.0%
!! TATAGGAGTTGATGGACGCA+AGG - chr7_1:75487235-75487254 None:intergenic 45.0%
CAACTCCTATACGATGTTCC+AGG + chr7_1:75487244-75487263 Msa1038580:intron 45.0%
TGTATCTGTCGAATGGGACA+CGG - chr7_1:75487288-75487307 None:intergenic 45.0%
AGTGCTCCTCTTCATGTCTT+AGG + chr7_1:75488617-75488636 Msa1038580:intron 45.0%
CTCACTCCTAAGACATGAAG+AGG - chr7_1:75488626-75488645 None:intergenic 45.0%
! AAACGATAAAGCACCCGTAC+CGG + chr7_1:75488713-75488732 Msa1038580:intron 45.0%
ATTGTATGTGCATCCGGTAC+GGG - chr7_1:75488729-75488748 None:intergenic 45.0%
GCAATAAAAAAAGCGGACGG+TGG + chr7_1:75489225-75489244 Msa1038580:intron 45.0%
TACAGTACCGTATCCACTAC+GGG - chr7_1:75489294-75489313 None:intergenic 45.0%
GTACAGTACCGTATCCACTA+CGG - chr7_1:75489295-75489314 None:intergenic 45.0%
GGTTCATAGTGGCCATGAAT+TGG + chr7_1:75489611-75489630 Msa1038580:CDS 45.0%
! TTCCACACAGGTTGAATGGA+AGG - chr7_1:75489715-75489734 None:intergenic 45.0%
! CCTATTCCACACAGGTTGAA+TGG - chr7_1:75489719-75489738 None:intergenic 45.0%
CCATTCAACCTGTGTGGAAT+AGG + chr7_1:75489716-75489735 Msa1038580:CDS 45.0%
AGAATCTCCCTATTCCACAC+AGG - chr7_1:75489727-75489746 None:intergenic 45.0%
! GTGCATTGACGAAGGTGAAA+TGG - chr7_1:75489904-75489923 None:intergenic 45.0%
!! CTCAAAAGCACTGCAGTTAG+AGG + chr7_1:75489963-75489982 Msa1038580:CDS 45.0%
GCAGTTAGAGGCAAATGAAG+AGG + chr7_1:75489975-75489994 Msa1038580:CDS 45.0%
GCTAACAATTCGGCACTTGT+TGG + chr7_1:75490039-75490058 Msa1038580:CDS 45.0%
! CGGTAACTGTTTTGCTTACC+CGG + chr7_1:75490068-75490087 Msa1038580:CDS 45.0%
! TAACTGTTTTGCTTACCCGG+CGG + chr7_1:75490071-75490090 Msa1038580:CDS 45.0%
! TCTCAGATTTGACTCGTGCT+AGG + chr7_1:75490256-75490275 Msa1038580:CDS 45.0%
TGAATTTCGGATGGGGTGAA+GGG + chr7_1:75490289-75490308 Msa1038580:CDS 45.0%
! GTGTATGGTGGAGTTGCAAA+AGG + chr7_1:75490312-75490331 Msa1038580:CDS 45.0%
! TATGGTGGAGTTGCAAAAGG+TGG + chr7_1:75490315-75490334 Msa1038580:CDS 45.0%
! ATGGTGGAGTTGCAAAAGGT+GGG + chr7_1:75490316-75490335 Msa1038580:CDS 45.0%
! TGCCCTCTGAAGATATGAAG+AGG + chr7_1:75490421-75490440 Msa1038580:CDS 45.0%
!! TAAATAAAATAGTTTAATAA+AGG - chr7_1:75488301-75488320 None:intergenic 5.0%
CGTTAATGTTCACAGTGCGG+AGG + chr7_1:75486879-75486898 Msa1038580:CDS 50.0%
TCATAAGGAGTGGGTGAAGC+TGG - chr7_1:75486926-75486945 None:intergenic 50.0%
TCCCTAATCCTTCCCGCTAA+TGG - chr7_1:75487100-75487119 None:intergenic 50.0%
ATTAGCGGGAAGGATTAGGG+AGG + chr7_1:75487099-75487118 Msa1038580:CDS 50.0%
TTAGCGGGAAGGATTAGGGA+GGG + chr7_1:75487100-75487119 Msa1038580:CDS 50.0%
GAAGGATTAGGGAGGGTGAT+GGG + chr7_1:75487107-75487126 Msa1038580:CDS 50.0%
!! ATGGTGGATCGTACTGGTGA+AGG + chr7_1:75487139-75487158 Msa1038580:CDS 50.0%
!! AGTTGATGGACGCAAGGGAA+TGG - chr7_1:75487229-75487248 None:intergenic 50.0%
CTGAGCCTGGAACATCGTAT+AGG - chr7_1:75487252-75487271 None:intergenic 50.0%
GTGTCCCATTCGACAGATAC+AGG + chr7_1:75487287-75487306 Msa1038580:intron 50.0%
TCACACGTCTCAAGTGTGGT+GGG + chr7_1:75489590-75489609 Msa1038580:CDS 50.0%
!! CAAGTGTGGTGGGTTCATAG+TGG + chr7_1:75489600-75489619 Msa1038580:CDS 50.0%
CAGCTGCATCACCCATTGTA+TGG - chr7_1:75489639-75489658 None:intergenic 50.0%
CATACAATGGGTGATGCAGC+TGG + chr7_1:75489637-75489656 Msa1038580:CDS 50.0%
CATGACTGCATGGGCAGAAA+TGG + chr7_1:75489672-75489691 Msa1038580:CDS 50.0%
GACCTTCCATTCAACCTGTG+TGG + chr7_1:75489710-75489729 Msa1038580:CDS 50.0%
GGTTGCATGTAATGCGTGGA+GGG - chr7_1:75489762-75489781 None:intergenic 50.0%
TGGTTGCATGTAATGCGTGG+AGG - chr7_1:75489763-75489782 None:intergenic 50.0%
! CGAATGTGGTGCATTGACGA+AGG - chr7_1:75489912-75489931 None:intergenic 50.0%
GTTAAACCTCGAGCGTGCAT+TGG - chr7_1:75490019-75490038 None:intergenic 50.0%
GCATTCTGTGGCCGATCTTA+TGG + chr7_1:75490188-75490207 Msa1038580:CDS 50.0%
GTGAATTTCGGATGGGGTGA+AGG + chr7_1:75490288-75490307 Msa1038580:CDS 50.0%
GAATTTCGGATGGGGTGAAG+GGG + chr7_1:75490290-75490309 Msa1038580:CDS 50.0%
TGGTGGAGTTGCAAAAGGTG+GGG + chr7_1:75490317-75490336 Msa1038580:CDS 50.0%
!! GGGACGATATAGGTTGATCC+AGG - chr7_1:75490354-75490373 None:intergenic 50.0%
TAAGGAGTGGGTGAAGCTGG+TGG - chr7_1:75486923-75486942 None:intergenic 55.0%
GGAAGGATTAGGGAGGGTGA+TGG + chr7_1:75487106-75487125 Msa1038580:CDS 55.0%
!! TGATGGGCGCAAGTTGATGG+TGG + chr7_1:75487123-75487142 Msa1038580:CDS 55.0%
! TGATGGACGCAAGGGAATGG+AGG - chr7_1:75487226-75487245 None:intergenic 55.0%
! TTTCGTACCGGTACCCGTAG+TGG + chr7_1:75489278-75489297 Msa1038580:intron 55.0%
!! ACCGGTACCCGTAGTGGATA+CGG + chr7_1:75489284-75489303 Msa1038580:intron 55.0%
ACCGTATCCACTACGGGTAC+CGG - chr7_1:75489288-75489307 None:intergenic 55.0%
CAGGTCACACGTCTCAAGTG+TGG + chr7_1:75489586-75489605 Msa1038580:intron 55.0%
GTCACACGTCTCAAGTGTGG+TGG + chr7_1:75489589-75489608 Msa1038580:CDS 55.0%
CATAGCCACGCTTCGTCTCT+TGG + chr7_1:75489876-75489895 Msa1038580:CDS 55.0%
TGGAACCAAGAGACGAAGCG+TGG - chr7_1:75489884-75489903 None:intergenic 55.0%
AAGCTTCCCTGCAGTGGTGA+CGG - chr7_1:75490097-75490116 None:intergenic 55.0%
ACCACTGCAGGGAAGCTTTG+TGG + chr7_1:75490099-75490118 Msa1038580:CDS 55.0%
TCCACAAAGCTTCCCTGCAG+TGG - chr7_1:75490103-75490122 None:intergenic 55.0%
CTGGTGGCACCAACTCTGGT+TGG - chr7_1:75486907-75486926 None:intergenic 60.0%
GAAGCTGGTGGCACCAACTC+TGG - chr7_1:75486911-75486930 None:intergenic 60.0%
!! GGGTGATGGGCGCAAGTTGA+TGG + chr7_1:75487120-75487139 Msa1038580:CDS 60.0%
GCATGGGCAGAAATGGCTCG+AGG + chr7_1:75489679-75489698 Msa1038580:CDS 60.0%
! GGATGGGGTGAAGGGGTGTA+TGG + chr7_1:75490297-75490316 Msa1038580:CDS 60.0%
! TGGGGTGAAGGGGTGTATGG+TGG + chr7_1:75490300-75490319 Msa1038580:CDS 60.0%
GGAGTTGCAAAAGGTGGGGC+TGG + chr7_1:75490321-75490340 Msa1038580:CDS 60.0%
! GGTGGGGCTGGAACTTTTCC+TGG + chr7_1:75490333-75490352 Msa1038580:CDS 60.0%
!! GCGGAGGTGCCAACCAGAGT+TGG + chr7_1:75486895-75486914 Msa1038580:CDS 65.0%
GCATCGCCAATGCACGCTCG+AGG + chr7_1:75490010-75490029 Msa1038580:CDS 65.0%
!! CTGCAGTGGTGACGGCCGCC+GGG - chr7_1:75490089-75490108 None:intergenic 75.0%
!! CCTGCAGTGGTGACGGCCGC+CGG - chr7_1:75490090-75490109 None:intergenic 75.0%
CGGCGGCCGTCACCACTGCA+GGG + chr7_1:75490088-75490107 Msa1038580:CDS 75.0%
! CCGGCGGCCGTCACCACTGC+AGG + chr7_1:75490087-75490106 Msa1038580:CDS 80.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 75486866 75490527 75486866 ID=Msa1038580;Name=Msa1038580
chr7_1 mRNA 75486866 75490527 75486866 ID=Msa1038580-mRNA-1;Parent=Msa1038580;Name=Msa1038580-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0|0|0|1|1|1|2|0|443
chr7_1 exon 75486866 75487258 75486866 ID=Msa1038580-mRNA-1:exon:19300;Parent=Msa1038580-mRNA-1
chr7_1 exon 75489589 75490527 75489589 ID=Msa1038580-mRNA-1:exon:19301;Parent=Msa1038580-mRNA-1
chr7_1 CDS 75486866 75487258 75486866 ID=Msa1038580-mRNA-1:cds;Parent=Msa1038580-mRNA-1
chr7_1 CDS 75489589 75490527 75489589 ID=Msa1038580-mRNA-1:cds;Parent=Msa1038580-mRNA-1
Gene Sequence

>Msa1038580

ATGACTTCGTCATCGTTAATGTTCACAGTGCGGAGGTGCCAACCAGAGTTGGTGCCACCAGCTTCACCCACTCCTTATGAAGTTAAACTATCATCTGACATAGATGATCAAGAAGGTATGCGTTTCAATAGTCCTGTCATATTTATCTATCGTCACGAACCATCAATGGTAGAGAAAGACCCTGTTAAGGTACTTAGACATGCACTCTCACAAACACTTGTGTATTACTATCCATTAGCGGGAAGGATTAGGGAGGGTGATGGGCGCAAGTTGATGGTGGATCGTACTGGTGAAGGTGTCATGTTCATTGAAGCTGAAGCTGATGTAACACTTGATCAATTTGGTGATGCTCTACATCCTCCATTCCCTTGCGTCCATCAACTCCTATACGATGTCACACGTCTCAAGTGTGGTGGGTTCATAGTGGCCATGAATTGGAACCATACAATGGGTGATGCAGCTGGTTTGAGACAATTCATGACTGCATGGGCAGAAATGGCTCGAGGAGCACATCGACCTTCCATTCAACCTGTGTGGAATAGGGAGATTCTAATGGCAAGAGACCCTCCACGCATTACATGCAACCATTTTGAATACGAACAAATTTTTTCGCCAAATACCATTAAGGAAGAAGATACTGCTTCTCTAGTCCATCAATCTTTCTTCTTTAGAGCTTCTGACATAGCCACGCTTCGTCTCTTGGTTCCATTTCACCTTCGTCAATGCACCACATTCGATCTTATCACTTCATGTTTTTGGCGTTGTCGCTCAAAAGCACTGCAGTTAGAGGCAAATGAAGAGGTACGAATGATGTGCATCGCCAATGCACGCTCGAGGTTTAACGCTAACAATTCGGCACTTGTTGGATATTACGGTAACTGTTTTGCTTACCCGGCGGCCGTCACCACTGCAGGGAAGCTTTGTGGAAACCCATTTGGTTATGCAGTGGAGTTGATAAGAAAATTAAAAGCTGAAGTTACAGAGGAATACATGCATTCTGTGGCCGATCTTATGGTTATTAAGGAACGGTGTTTATTTACAACTGTAAGGTCTTGTGTTATCTCAGATTTGACTCGTGCTAGGCTCTCAGAAGTGAATTTCGGATGGGGTGAAGGGGTGTATGGTGGAGTTGCAAAAGGTGGGGCTGGAACTTTTCCTGGATCAACCTATATCGTCCCACATAAGAATATAAATGGAGAAGAAACTTTGATGTTACCAATTTGTTTGCCCTCTGAAGATATGAAGAGGTTTGCAAAAGAGTTTGATGAGATGCTTGGTAACCAAAATCATCTTACACCGAGTGCTCCTAGTTTTGTGATGTCTACCTTATAG
Protein sequence

>Msa1038580

MTSSSLMFTVRRCQPELVPPASPTPYEVKLSSDIDDQEGMRFNSPVIFIYRHEPSMVEKDPVKVLRHALSQTLVYYYPLAGRIREGDGRKLMVDRTGEGVMFIEAEADVTLDQFGDALHPPFPCVHQLLYDVTRLKCGGFIVAMNWNHTMGDAAGLRQFMTAWAEMARGAHRPSIQPVWNREILMARDPPRITCNHFEYEQIFSPNTIKEEDTASLVHQSFFFRASDIATLRLLVPFHLRQCTTFDLITSCFWRCRSKALQLEANEEVRMMCIANARSRFNANNSALVGYYGNCFAYPAAVTTAGKLCGNPFGYAVELIRKLKAEVTEEYMHSVADLMVIKERCLFTTVRSCVISDLTRARLSEVNFGWGEGVYGGVAKGGAGTFPGSTYIVPHKNINGEETLMLPICLPSEDMKRFAKEFDEMLGNQNHLTPSAPSFVMSTL*