AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1443440


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1443440 MtrunA17_Chr2g0321551 91.603 262 21 1 1 262 1 261 9.84e-169 466
Msa1443440 MtrunA17_Chr4g0026261 38.961 231 114 8 1 220 1 215 1.06e-33 122
Msa1443440 MtrunA17_Chr7g0273251 38.406 138 78 3 112 247 106 238 3.82e-13 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1443440 AT5G22390.1 33.621 232 93 7 1 221 1 182 1.69e-21 89.7
Msa1443440 AT1G54740.1 33.043 115 74 2 106 219 33 145 7.12e-12 64.7

Find 69 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTCCTGATGATGAGTTTC+TGG 0.094474 tig0030443:+42349 Msa1443440:CDS
GGAAGCCTTGGGTTTATTTC+AGG 0.176058 tig0030443:+42219 Msa1443440:CDS
TTCAGGTCTATTAGGAATAA+TGG 0.250900 tig0030443:+42236 Msa1443440:CDS
TCTTCAAGACATCATTCTTA+TGG 0.257835 tig0030443:+42134 Msa1443440:CDS
GGGTTTATTTCAGGTCTATT+AGG 0.260287 tig0030443:+42228 Msa1443440:CDS
TCCTCCTTTACTGAGATATT+TGG 0.276616 tig0030443:+41804 Msa1443440:CDS
AAGAAGCTGAAGATGGAGTT+TGG 0.330013 tig0030443:-41914 None:intergenic
GATGAAGGAGAGAATGATAT+AGG 0.348515 tig0030443:+42380 Msa1443440:CDS
GAAATAAACCCAAGGCTTCC+CGG 0.351372 tig0030443:-42216 None:intergenic
AGTAAAGGAGGAGGACTCTA+TGG 0.362243 tig0030443:-41793 None:intergenic
CATCTTTGCACCGAAGGTCT+TGG 0.374924 tig0030443:+42017 Msa1443440:CDS
GGTCCTCCCTATGCTTGAAA+TGG 0.394454 tig0030443:-42195 None:intergenic
TAGGGAGGACCGGGAAGCCT+TGG 0.399372 tig0030443:+42207 Msa1443440:CDS
CTGTTGGTATGCCTTGCTAT+TGG 0.401166 tig0030443:-41948 None:intergenic
TATAAGCACGCAGGACCTCC+TGG 0.403062 tig0030443:-42292 None:intergenic
AGGGAGGACCGGGAAGCCTT+GGG 0.431578 tig0030443:+42208 Msa1443440:CDS
TTGATGATGATTCCTTGAAA+TGG 0.433133 tig0030443:-41833 None:intergenic
TCTTCCAGAAACTCATCATC+AGG 0.449345 tig0030443:-42353 None:intergenic
GAAAGGGATTGAAGCAGTGT+TGG 0.454932 tig0030443:-41744 None:intergenic
ATTTGGTGAACTCCATTTCA+AGG 0.460735 tig0030443:+41821 Msa1443440:CDS
TTCAGAATTCAGCCATGAAA+AGG 0.472686 tig0030443:-41988 None:intergenic
AAGACTCAGACTCTTTGATC+TGG 0.478220 tig0030443:-41881 None:intergenic
CAATAGCAAGGCATACCAAC+AGG 0.489567 tig0030443:+41949 Msa1443440:CDS
GTCCTCCCTATGCTTGAAAT+GGG 0.492965 tig0030443:-42194 None:intergenic
CTCCTCCCATTTCAAGCATA+GGG 0.493217 tig0030443:+42189 Msa1443440:CDS
GGGTGTCAAAGATGTGTTGT+AGG 0.504528 tig0030443:-41707 None:intergenic
TAGGCTGTCACAGGTTGCCA+TGG 0.514804 tig0030443:-41688 None:intergenic
CCTCCTCCCATTTCAAGCAT+AGG 0.517066 tig0030443:+42188 Msa1443440:CDS
TCGGTATCCTTACCTCTTCG+AGG 0.517417 tig0030443:-42268 None:intergenic
ATGGAGAATGTAGGAGGTCA+AGG 0.523495 tig0030443:+42153 Msa1443440:CDS
ATTTCAAGCATAGGGAGGAC+CGG 0.525710 tig0030443:+42197 Msa1443440:CDS
TTCACCAAATATCTCAGTAA+AGG 0.527789 tig0030443:-41808 None:intergenic
AGCATGCATCTTTGCACCGA+AGG 0.535589 tig0030443:+42011 Msa1443440:CDS
GAGGACTCTATGGATTTCAC+TGG 0.537192 tig0030443:-41783 None:intergenic
CCTATGCTTGAAATGGGAGG+AGG 0.541240 tig0030443:-42188 None:intergenic
CTGCGTGCTTATAGAGAGGA+TGG 0.545087 tig0030443:+42302 Msa1443440:CDS
GATTTGTCCTCGAAGAGGTA+AGG 0.546648 tig0030443:+42261 Msa1443440:CDS
ATAAGCACGCAGGACCTCCT+GGG 0.552052 tig0030443:-42291 None:intergenic
ACTCTCAAAACCAAGACCTT+CGG 0.553557 tig0030443:-42027 None:intergenic
AGAGGTAAGGATACCGACCC+AGG 0.560235 tig0030443:+42274 Msa1443440:CDS
TTTCAATTACACCAATAGCA+AGG 0.571241 tig0030443:+41937 Msa1443440:CDS
ACCAAATATCTCAGTAAAGG+AGG 0.572346 tig0030443:-41805 None:intergenic
AGAAGACATGGCAAAAGAAG+AGG 0.576952 tig0030443:+42421 Msa1443440:CDS
TGATCTGGTTGAAGTTTGTG+TGG 0.577238 tig0030443:-41866 None:intergenic
ATCATTCTTATGGAGAATGT+AGG 0.580254 tig0030443:+42144 Msa1443440:CDS
TGAGAGTTCAGACGATGTCG+AGG 0.585948 tig0030443:+42043 Msa1443440:CDS
TTTCAAGCATAGGGAGGACC+GGG 0.586404 tig0030443:+42198 Msa1443440:CDS
AAATATCTCAGTAAAGGAGG+AGG 0.599938 tig0030443:-41802 None:intergenic
CTATGCTTGAAATGGGAGGA+GGG 0.601586 tig0030443:-42187 None:intergenic
TTTCTGGAAGATGAGGATGA+AGG 0.603701 tig0030443:+42365 Msa1443440:CDS
AGCTGAGGAAGGAGAAGACA+TGG 0.613301 tig0030443:+42409 Msa1443440:CDS
TCCAGAAACTCATCATCAGG+AGG 0.618671 tig0030443:-42350 None:intergenic
TGGAGAATGTAGGAGGTCAA+GGG 0.619517 tig0030443:+42154 Msa1443440:CDS
GATGTGTTGTAGGCTGTCAC+AGG 0.621992 tig0030443:-41697 None:intergenic
CTCCCTATGCTTGAAATGGG+AGG 0.622171 tig0030443:-42191 None:intergenic
GATGTCGAGGACTCAAAGAG+TGG 0.622521 tig0030443:+42056 Msa1443440:CDS
ATAGGATGCATAGCTGAGGA+AGG 0.625542 tig0030443:+42398 Msa1443440:CDS
ATTCTTATGGAGAATGTAGG+AGG 0.629147 tig0030443:+42147 Msa1443440:CDS
GCACGCAGGACCTCCTGGGT+CGG 0.641235 tig0030443:-42287 None:intergenic
ATAGACCTGAAATAAACCCA+AGG 0.650033 tig0030443:-42224 None:intergenic
TGGAAGATTTGTCCTCGAAG+AGG 0.651915 tig0030443:+42256 Msa1443440:CDS
GTGCTTATAGAGAGGATGGA+AGG 0.652178 tig0030443:+42306 Msa1443440:CDS
CCAGAAACTCATCATCAGGA+GGG 0.654723 tig0030443:-42349 None:intergenic
GGTCCTGCGTGCTTATAGAG+AGG 0.655010 tig0030443:+42298 Msa1443440:CDS
TGATGAGTTTCTGGAAGATG+AGG 0.656575 tig0030443:+42358 Msa1443440:CDS
CTCCCATTTCAAGCATAGGG+AGG 0.670101 tig0030443:+42192 Msa1443440:CDS
TGATATAGGATGCATAGCTG+AGG 0.671509 tig0030443:+42394 Msa1443440:CDS
CATCCTCTCTATAAGCACGC+AGG 0.674324 tig0030443:-42301 None:intergenic
GGTAAGGATACCGACCCAGG+AGG 0.739295 tig0030443:+42277 Msa1443440:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAATTTTGTTAAATGAAA+GGG - tig0030443:41763-41782 None:intergenic 10.0%
!!! TTTAATTTTGTTAAATGAAA+GGG - tig0030443:41763-41782 None:intergenic 10.0%
!!! GTTTAATTTTGTTAAATGAA+AGG - tig0030443:41764-41783 None:intergenic 15.0%
!!! GTTTAATTTTGTTAAATGAA+AGG - tig0030443:41764-41783 None:intergenic 15.0%
TTCACCAAATATCTCAGTAA+AGG - tig0030443:41811-41830 None:intergenic 30.0%
!! TTGATGATGATTCCTTGAAA+TGG - tig0030443:41836-41855 None:intergenic 30.0%
ATTGAAAAAGAAGCTGAAGA+TGG - tig0030443:41924-41943 None:intergenic 30.0%
TTTCAATTACACCAATAGCA+AGG + tig0030443:41937-41956 Msa1443440:CDS 30.0%
TCTTCAAGACATCATTCTTA+TGG + tig0030443:42134-42153 Msa1443440:CDS 30.0%
ATCATTCTTATGGAGAATGT+AGG + tig0030443:42144-42163 Msa1443440:CDS 30.0%
TTCAGGTCTATTAGGAATAA+TGG + tig0030443:42236-42255 Msa1443440:CDS 30.0%
TTCACCAAATATCTCAGTAA+AGG - tig0030443:41811-41830 None:intergenic 30.0%
!! TTGATGATGATTCCTTGAAA+TGG - tig0030443:41836-41855 None:intergenic 30.0%
ATTGAAAAAGAAGCTGAAGA+TGG - tig0030443:41924-41943 None:intergenic 30.0%
TTTCAATTACACCAATAGCA+AGG + tig0030443:41937-41956 Msa1443440:CDS 30.0%
TCTTCAAGACATCATTCTTA+TGG + tig0030443:42134-42153 Msa1443440:CDS 30.0%
ATCATTCTTATGGAGAATGT+AGG + tig0030443:42144-42163 Msa1443440:CDS 30.0%
TTCAGGTCTATTAGGAATAA+TGG + tig0030443:42236-42255 Msa1443440:CDS 30.0%
!! TGTTGGATTTTCTGGCAATA+GGG - tig0030443:41730-41749 None:intergenic 35.0%
AAATATCTCAGTAAAGGAGG+AGG - tig0030443:41805-41824 None:intergenic 35.0%
TCCTCCTTTACTGAGATATT+TGG + tig0030443:41804-41823 Msa1443440:CDS 35.0%
ACCAAATATCTCAGTAAAGG+AGG - tig0030443:41808-41827 None:intergenic 35.0%
! ATTTGGTGAACTCCATTTCA+AGG + tig0030443:41821-41840 Msa1443440:CDS 35.0%
TTCAGAATTCAGCCATGAAA+AGG - tig0030443:41991-42010 None:intergenic 35.0%
ATTCTTATGGAGAATGTAGG+AGG + tig0030443:42147-42166 Msa1443440:CDS 35.0%
ATAGACCTGAAATAAACCCA+AGG - tig0030443:42227-42246 None:intergenic 35.0%
! GGGTTTATTTCAGGTCTATT+AGG + tig0030443:42228-42247 Msa1443440:CDS 35.0%
GATGAAGGAGAGAATGATAT+AGG + tig0030443:42380-42399 Msa1443440:CDS 35.0%
!! TGTTGGATTTTCTGGCAATA+GGG - tig0030443:41730-41749 None:intergenic 35.0%
AAATATCTCAGTAAAGGAGG+AGG - tig0030443:41805-41824 None:intergenic 35.0%
TCCTCCTTTACTGAGATATT+TGG + tig0030443:41804-41823 Msa1443440:CDS 35.0%
ACCAAATATCTCAGTAAAGG+AGG - tig0030443:41808-41827 None:intergenic 35.0%
! ATTTGGTGAACTCCATTTCA+AGG + tig0030443:41821-41840 Msa1443440:CDS 35.0%
TTCAGAATTCAGCCATGAAA+AGG - tig0030443:41991-42010 None:intergenic 35.0%
ATTCTTATGGAGAATGTAGG+AGG + tig0030443:42147-42166 Msa1443440:CDS 35.0%
ATAGACCTGAAATAAACCCA+AGG - tig0030443:42227-42246 None:intergenic 35.0%
! GGGTTTATTTCAGGTCTATT+AGG + tig0030443:42228-42247 Msa1443440:CDS 35.0%
GATGAAGGAGAGAATGATAT+AGG + tig0030443:42380-42399 Msa1443440:CDS 35.0%
!! GTGTTGGATTTTCTGGCAAT+AGG - tig0030443:41731-41750 None:intergenic 40.0%
!! TGAAGCAGTGTTGGATTTTC+TGG - tig0030443:41738-41757 None:intergenic 40.0%
TGATCTGGTTGAAGTTTGTG+TGG - tig0030443:41869-41888 None:intergenic 40.0%
AAGACTCAGACTCTTTGATC+TGG - tig0030443:41884-41903 None:intergenic 40.0%
AAGAAGCTGAAGATGGAGTT+TGG - tig0030443:41917-41936 None:intergenic 40.0%
! AAAGCAGTGACACCTTTTCA+TGG + tig0030443:41976-41995 Msa1443440:CDS 40.0%
ACTCTCAAAACCAAGACCTT+CGG - tig0030443:42030-42049 None:intergenic 40.0%
TCTTCCAGAAACTCATCATC+AGG - tig0030443:42356-42375 None:intergenic 40.0%
! TGATGAGTTTCTGGAAGATG+AGG + tig0030443:42358-42377 Msa1443440:CDS 40.0%
! TTTCTGGAAGATGAGGATGA+AGG + tig0030443:42365-42384 Msa1443440:CDS 40.0%
TGATATAGGATGCATAGCTG+AGG + tig0030443:42394-42413 Msa1443440:CDS 40.0%
AGAAGACATGGCAAAAGAAG+AGG + tig0030443:42421-42440 Msa1443440:CDS 40.0%
!! GTGTTGGATTTTCTGGCAAT+AGG - tig0030443:41731-41750 None:intergenic 40.0%
!! TGAAGCAGTGTTGGATTTTC+TGG - tig0030443:41738-41757 None:intergenic 40.0%
TGATCTGGTTGAAGTTTGTG+TGG - tig0030443:41869-41888 None:intergenic 40.0%
AAGACTCAGACTCTTTGATC+TGG - tig0030443:41884-41903 None:intergenic 40.0%
AAGAAGCTGAAGATGGAGTT+TGG - tig0030443:41917-41936 None:intergenic 40.0%
! AAAGCAGTGACACCTTTTCA+TGG + tig0030443:41976-41995 Msa1443440:CDS 40.0%
ACTCTCAAAACCAAGACCTT+CGG - tig0030443:42030-42049 None:intergenic 40.0%
TCTTCCAGAAACTCATCATC+AGG - tig0030443:42356-42375 None:intergenic 40.0%
! TGATGAGTTTCTGGAAGATG+AGG + tig0030443:42358-42377 Msa1443440:CDS 40.0%
! TTTCTGGAAGATGAGGATGA+AGG + tig0030443:42365-42384 Msa1443440:CDS 40.0%
TGATATAGGATGCATAGCTG+AGG + tig0030443:42394-42413 Msa1443440:CDS 40.0%
AGAAGACATGGCAAAAGAAG+AGG + tig0030443:42421-42440 Msa1443440:CDS 40.0%
GGGTGTCAAAGATGTGTTGT+AGG - tig0030443:41710-41729 None:intergenic 45.0%
GAAAGGGATTGAAGCAGTGT+TGG - tig0030443:41747-41766 None:intergenic 45.0%
GAGGACTCTATGGATTTCAC+TGG - tig0030443:41786-41805 None:intergenic 45.0%
AGTAAAGGAGGAGGACTCTA+TGG - tig0030443:41796-41815 None:intergenic 45.0%
! CTGTTGGTATGCCTTGCTAT+TGG - tig0030443:41951-41970 None:intergenic 45.0%
CAATAGCAAGGCATACCAAC+AGG + tig0030443:41949-41968 Msa1443440:CDS 45.0%
ATGGAGAATGTAGGAGGTCA+AGG + tig0030443:42153-42172 Msa1443440:CDS 45.0%
TGGAGAATGTAGGAGGTCAA+GGG + tig0030443:42154-42173 Msa1443440:CDS 45.0%
CTATGCTTGAAATGGGAGGA+GGG - tig0030443:42190-42209 None:intergenic 45.0%
CTCCTCCCATTTCAAGCATA+GGG + tig0030443:42189-42208 Msa1443440:CDS 45.0%
GTCCTCCCTATGCTTGAAAT+GGG - tig0030443:42197-42216 None:intergenic 45.0%
ATTTCAAGCATAGGGAGGAC+CGG + tig0030443:42197-42216 Msa1443440:CDS 45.0%
GAAATAAACCCAAGGCTTCC+CGG - tig0030443:42219-42238 None:intergenic 45.0%
GGAAGCCTTGGGTTTATTTC+AGG + tig0030443:42219-42238 Msa1443440:CDS 45.0%
TGGAAGATTTGTCCTCGAAG+AGG + tig0030443:42256-42275 Msa1443440:CDS 45.0%
GATTTGTCCTCGAAGAGGTA+AGG + tig0030443:42261-42280 Msa1443440:CDS 45.0%
GTGCTTATAGAGAGGATGGA+AGG + tig0030443:42306-42325 Msa1443440:CDS 45.0%
CCAGAAACTCATCATCAGGA+GGG - tig0030443:42352-42371 None:intergenic 45.0%
TCCAGAAACTCATCATCAGG+AGG - tig0030443:42353-42372 None:intergenic 45.0%
ATAGGATGCATAGCTGAGGA+AGG + tig0030443:42398-42417 Msa1443440:CDS 45.0%
GGGTGTCAAAGATGTGTTGT+AGG - tig0030443:41710-41729 None:intergenic 45.0%
GAAAGGGATTGAAGCAGTGT+TGG - tig0030443:41747-41766 None:intergenic 45.0%
GAGGACTCTATGGATTTCAC+TGG - tig0030443:41786-41805 None:intergenic 45.0%
AGTAAAGGAGGAGGACTCTA+TGG - tig0030443:41796-41815 None:intergenic 45.0%
! CTGTTGGTATGCCTTGCTAT+TGG - tig0030443:41951-41970 None:intergenic 45.0%
CAATAGCAAGGCATACCAAC+AGG + tig0030443:41949-41968 Msa1443440:CDS 45.0%
ATGGAGAATGTAGGAGGTCA+AGG + tig0030443:42153-42172 Msa1443440:CDS 45.0%
TGGAGAATGTAGGAGGTCAA+GGG + tig0030443:42154-42173 Msa1443440:CDS 45.0%
CTATGCTTGAAATGGGAGGA+GGG - tig0030443:42190-42209 None:intergenic 45.0%
CTCCTCCCATTTCAAGCATA+GGG + tig0030443:42189-42208 Msa1443440:CDS 45.0%
GTCCTCCCTATGCTTGAAAT+GGG - tig0030443:42197-42216 None:intergenic 45.0%
ATTTCAAGCATAGGGAGGAC+CGG + tig0030443:42197-42216 Msa1443440:CDS 45.0%
GAAATAAACCCAAGGCTTCC+CGG - tig0030443:42219-42238 None:intergenic 45.0%
GGAAGCCTTGGGTTTATTTC+AGG + tig0030443:42219-42238 Msa1443440:CDS 45.0%
TGGAAGATTTGTCCTCGAAG+AGG + tig0030443:42256-42275 Msa1443440:CDS 45.0%
GATTTGTCCTCGAAGAGGTA+AGG + tig0030443:42261-42280 Msa1443440:CDS 45.0%
GTGCTTATAGAGAGGATGGA+AGG + tig0030443:42306-42325 Msa1443440:CDS 45.0%
CCAGAAACTCATCATCAGGA+GGG - tig0030443:42352-42371 None:intergenic 45.0%
TCCAGAAACTCATCATCAGG+AGG - tig0030443:42353-42372 None:intergenic 45.0%
ATAGGATGCATAGCTGAGGA+AGG + tig0030443:42398-42417 Msa1443440:CDS 45.0%
GATGTGTTGTAGGCTGTCAC+AGG - tig0030443:41700-41719 None:intergenic 50.0%
!! GTCACTGCTTTTGTGCCTGT+TGG - tig0030443:41967-41986 None:intergenic 50.0%
AGCATGCATCTTTGCACCGA+AGG + tig0030443:42011-42030 Msa1443440:CDS 50.0%
CATCTTTGCACCGAAGGTCT+TGG + tig0030443:42017-42036 Msa1443440:CDS 50.0%
TGAGAGTTCAGACGATGTCG+AGG + tig0030443:42043-42062 Msa1443440:CDS 50.0%
GATGTCGAGGACTCAAAGAG+TGG + tig0030443:42056-42075 Msa1443440:CDS 50.0%
CCTATGCTTGAAATGGGAGG+AGG - tig0030443:42191-42210 None:intergenic 50.0%
CCTCCTCCCATTTCAAGCAT+AGG + tig0030443:42188-42207 Msa1443440:CDS 50.0%
CTCCCTATGCTTGAAATGGG+AGG - tig0030443:42194-42213 None:intergenic 50.0%
CTCCCATTTCAAGCATAGGG+AGG + tig0030443:42192-42211 Msa1443440:CDS 50.0%
GGTCCTCCCTATGCTTGAAA+TGG - tig0030443:42198-42217 None:intergenic 50.0%
TTTCAAGCATAGGGAGGACC+GGG + tig0030443:42198-42217 Msa1443440:CDS 50.0%
TCGGTATCCTTACCTCTTCG+AGG - tig0030443:42271-42290 None:intergenic 50.0%
CATCCTCTCTATAAGCACGC+AGG - tig0030443:42304-42323 None:intergenic 50.0%
CTGCGTGCTTATAGAGAGGA+TGG + tig0030443:42302-42321 Msa1443440:CDS 50.0%
! CCCTCCTGATGATGAGTTTC+TGG + tig0030443:42349-42368 Msa1443440:CDS 50.0%
AGCTGAGGAAGGAGAAGACA+TGG + tig0030443:42409-42428 Msa1443440:CDS 50.0%
GATGTGTTGTAGGCTGTCAC+AGG - tig0030443:41700-41719 None:intergenic 50.0%
!! GTCACTGCTTTTGTGCCTGT+TGG - tig0030443:41967-41986 None:intergenic 50.0%
AGCATGCATCTTTGCACCGA+AGG + tig0030443:42011-42030 Msa1443440:CDS 50.0%
CATCTTTGCACCGAAGGTCT+TGG + tig0030443:42017-42036 Msa1443440:CDS 50.0%
TGAGAGTTCAGACGATGTCG+AGG + tig0030443:42043-42062 Msa1443440:CDS 50.0%
GATGTCGAGGACTCAAAGAG+TGG + tig0030443:42056-42075 Msa1443440:CDS 50.0%
CCTATGCTTGAAATGGGAGG+AGG - tig0030443:42191-42210 None:intergenic 50.0%
CCTCCTCCCATTTCAAGCAT+AGG + tig0030443:42188-42207 Msa1443440:CDS 50.0%
CTCCCTATGCTTGAAATGGG+AGG - tig0030443:42194-42213 None:intergenic 50.0%
CTCCCATTTCAAGCATAGGG+AGG + tig0030443:42192-42211 Msa1443440:CDS 50.0%
GGTCCTCCCTATGCTTGAAA+TGG - tig0030443:42198-42217 None:intergenic 50.0%
TTTCAAGCATAGGGAGGACC+GGG + tig0030443:42198-42217 Msa1443440:CDS 50.0%
TCGGTATCCTTACCTCTTCG+AGG - tig0030443:42271-42290 None:intergenic 50.0%
CATCCTCTCTATAAGCACGC+AGG - tig0030443:42304-42323 None:intergenic 50.0%
CTGCGTGCTTATAGAGAGGA+TGG + tig0030443:42302-42321 Msa1443440:CDS 50.0%
! CCCTCCTGATGATGAGTTTC+TGG + tig0030443:42349-42368 Msa1443440:CDS 50.0%
AGCTGAGGAAGGAGAAGACA+TGG + tig0030443:42409-42428 Msa1443440:CDS 50.0%
AGAGGTAAGGATACCGACCC+AGG + tig0030443:42274-42293 Msa1443440:CDS 55.0%
ATAAGCACGCAGGACCTCCT+GGG - tig0030443:42294-42313 None:intergenic 55.0%
TATAAGCACGCAGGACCTCC+TGG - tig0030443:42295-42314 None:intergenic 55.0%
GGTCCTGCGTGCTTATAGAG+AGG + tig0030443:42298-42317 Msa1443440:CDS 55.0%
AGAGGTAAGGATACCGACCC+AGG + tig0030443:42274-42293 Msa1443440:CDS 55.0%
ATAAGCACGCAGGACCTCCT+GGG - tig0030443:42294-42313 None:intergenic 55.0%
TATAAGCACGCAGGACCTCC+TGG - tig0030443:42295-42314 None:intergenic 55.0%
GGTCCTGCGTGCTTATAGAG+AGG + tig0030443:42298-42317 Msa1443440:CDS 55.0%
GGTAAGGATACCGACCCAGG+AGG + tig0030443:42277-42296 Msa1443440:CDS 60.0%
GGTAAGGATACCGACCCAGG+AGG + tig0030443:42277-42296 Msa1443440:CDS 60.0%
TAGGGAGGACCGGGAAGCCT+TGG + tig0030443:42207-42226 Msa1443440:CDS 65.0%
AGGGAGGACCGGGAAGCCTT+GGG + tig0030443:42208-42227 Msa1443440:CDS 65.0%
TAGGGAGGACCGGGAAGCCT+TGG + tig0030443:42207-42226 Msa1443440:CDS 65.0%
AGGGAGGACCGGGAAGCCTT+GGG + tig0030443:42208-42227 Msa1443440:CDS 65.0%
GCACGCAGGACCTCCTGGGT+CGG - tig0030443:42290-42309 None:intergenic 70.0%
GCACGCAGGACCTCCTGGGT+CGG - tig0030443:42290-42309 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0030443 gene 41690 42490 41690 ID=Msa1443440;Name=Msa1443440
tig0030443 mRNA 41690 42490 41690 ID=Msa1443440-mRNA-1;Parent=Msa1443440;Name=Msa1443440-mRNA-1;_AED=0.16;_eAED=0.17;_QI=0|-1|0|1|-1|1|1|0|266
tig0030443 exon 41690 42490 41690 ID=Msa1443440-mRNA-1:exon:13925;Parent=Msa1443440-mRNA-1
tig0030443 CDS 41690 42490 41690 ID=Msa1443440-mRNA-1:cds;Parent=Msa1443440-mRNA-1
Gene Sequence

>Msa1443440

ATGGCAACCTGTGACAGCCTACAACACATCTTTGACACCCTATTGCCAGAAAATCCAACACTGCTTCAATCCCTTTCATTTAACAAAATTAAACCAGTGAAATCCATAGAGTCCTCCTCCTTTACTGAGATATTTGGTGAACTCCATTTCAAGGAATCATCATCAACAGAGATAAACCACACAAACTTCAACCAGATCAAAGAGTCTGAGTCTTTTGACACTATCCAAACTCCATCTTCAGCTTCTTTTTCAATTACACCAATAGCAAGGCATACCAACAGGCACAAAAGCAGTGACACCTTTTCATGGCTGAATTCTGAAAGCATGCATCTTTGCACCGAAGGTCTTGGTTTTGAGAGTTCAGACGATGTCGAGGACTCAAAGAGTGGAGCGAATGAATCTTTACAAATTGATCAAAATGAGAAACGTGTCGAACATCATTTATCTTCAAGACATCATTCTTATGGAGAATGTAGGAGGTCAAGGGTAAGTGAGTACCCTCCTCCCATTTCAAGCATAGGGAGGACCGGGAAGCCTTGGGTTTATTTCAGGTCTATTAGGAATAATGGAAGATTTGTCCTCGAAGAGGTAAGGATACCGACCCAGGAGGTCCTGCGTGCTTATAGAGAGGATGGAAGGCTCAAGCTGCAGTTTGTTCACCCTCCTGATGATGAGTTTCTGGAAGATGAGGATGAAGGAGAGAATGATATAGGATGCATAGCTGAGGAAGGAGAAGACATGGCAAAAGAAGAGGACGATTGTGTAACACATCATTCAAATGACAAAAAAGAGATTGCTTGA

Protein sequence

>Msa1443440

MATCDSLQHIFDTLLPENPTLLQSLSFNKIKPVKSIESSSFTEIFGELHFKESSSTEINHTNFNQIKESESFDTIQTPSSASFSITPIARHTNRHKSSDTFSWLNSESMHLCTEGLGFESSDDVEDSKSGANESLQIDQNEKRVEHHLSSRHHSYGECRRSRVSEYPPPISSIGRTGKPWVYFRSIRNNGRFVLEEVRIPTQEVLRAYREDGRLKLQFVHPPDDEFLEDEDEGENDIGCIAEEGEDMAKEEDDCVTHHSNDKKEIA*