AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0648160


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0648160 MtrunA17_Chr4g0040261 98.558 416 6 0 1 416 34 449 0.0 853
Msa0648160 MtrunA17_Chr4g0040271 92.584 418 30 1 1 418 1 417 0.0 801
Msa0648160 MtrunA17_Chr4g0040251 85.577 416 60 0 1 416 1 416 0.0 751
Msa0648160 MtrunA17_Chr4g0040221 70.238 420 117 4 1 416 1 416 0.0 570
Msa0648160 MtrunA17_Chr4g0040011 65.176 425 141 4 1 419 9 432 0.0 550
Msa0648160 MtrunA17_Chr4g0040001 65.035 429 140 5 1 420 1 428 0.0 547
Msa0648160 MtrunA17_Chr4g0040231 63.615 426 144 4 4 420 5 428 0.0 536
Msa0648160 MtrunA17_Chr7g0217051 61.151 417 161 1 5 420 7 423 0.0 531
Msa0648160 MtrunA17_Chr7g0248011 52.358 424 198 4 2 423 3 424 3.70e-151 437
Msa0648160 MtrunA17_Chr6g0457271 57.735 362 148 4 66 423 5 365 5.70e-145 417
Msa0648160 MtrunA17_Chr6g0457281 55.670 291 123 3 86 371 1 290 4.75e-112 330
Msa0648160 MtrunA17_Chr1g0147071 27.854 438 275 12 9 420 10 432 6.04e-45 162
Msa0648160 MtrunA17_Chr5g0393471 27.778 234 164 4 190 420 65 296 1.26e-19 89.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0648160 AT3G49190.1 29.613 439 273 9 9 420 18 447 2.91e-54 188
Msa0648160 AT5G53390.1 29.412 425 273 9 9 415 15 430 2.06e-53 185
Msa0648160 AT5G16350.3 29.829 409 258 10 9 404 7 399 4.57e-53 184
Msa0648160 AT5G12420.2 29.717 424 257 10 9 404 7 417 8.19e-53 183
Msa0648160 AT5G12420.1 29.717 424 257 10 9 404 7 417 1.04e-52 183
Msa0648160 AT5G16350.1 28.169 426 263 9 9 404 7 419 2.57e-51 180
Msa0648160 AT3G49210.1 28.668 443 275 10 9 415 26 463 7.31e-48 171
Msa0648160 AT5G22490.1 29.452 438 265 15 10 420 12 432 2.94e-47 169
Msa0648160 AT3G49200.1 28.111 434 280 11 9 415 26 454 4.73e-46 166
Msa0648160 AT2G38995.2 29.837 429 271 12 9 420 21 436 1.81e-45 164
Msa0648160 AT5G53380.1 27.752 436 278 11 1 413 1 422 1.81e-44 161
Msa0648160 AT5G16350.2 27.949 390 238 9 9 368 7 383 3.92e-44 159
Msa0648160 AT1G72110.1 27.358 424 281 11 9 416 12 424 2.05e-41 153
Msa0648160 AT5G22490.2 30.052 386 226 15 10 368 12 380 3.29e-40 148
Msa0648160 AT2G38995.4 30.108 372 231 11 65 419 7 366 2.01e-39 145
Msa0648160 AT5G37300.1 29.298 413 260 13 9 404 17 414 4.54e-39 147
Msa0648160 AT5G37300.4 29.298 413 260 13 9 404 35 432 4.86e-39 147
Msa0648160 AT2G38995.3 30.027 373 232 11 65 420 7 367 7.32e-39 145
Msa0648160 AT3G49210.2 28.198 383 234 10 9 355 26 403 9.84e-39 145
Msa0648160 AT1G72110.2 26.526 426 273 12 9 416 12 415 1.03e-36 140
Msa0648160 AT5G37300.2 28.877 374 240 11 9 368 35 396 4.93e-33 129
Msa0648160 AT5G37300.3 30.970 268 170 9 9 270 35 293 6.45e-26 107

Find 104 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAATTCCTTCTCTGATTT+TGG 0.058227 4_3:+54578896 Msa0648160:CDS
CTAACCCCTTAGAGTTTATT+TGG 0.122697 4_3:+54580114 Msa0648160:CDS
ATCTTTAATCATTGAGCTTT+TGG 0.190332 4_3:-54578930 None:intergenic
TGCTTTCCAAATAAACTCTA+AGG 0.205452 4_3:-54580120 None:intergenic
ATTAGTCTCTACTTTATAAT+AGG 0.215084 4_3:+54578135 Msa0648160:five_prime_UTR
CATTGAATGGCTCTTAGATA+TGG 0.311941 4_3:+54580187 Msa0648160:CDS
ATCAGAGAAGGAATTGAAAA+AGG 0.315071 4_3:-54578891 None:intergenic
TTGCTTAGTACTAGGAATAT+TGG 0.315217 4_3:+54579981 Msa0648160:CDS
TTAGTCTCTACTTTATAATA+GGG 0.325163 4_3:+54578136 Msa0648160:five_prime_UTR
TTCCACTGGCCCAATCAAAT+TGG 0.339045 4_3:-54580374 None:intergenic
ACAATAAATGATGTGATTAC+TGG 0.341873 4_3:+54579879 Msa0648160:CDS
TGGCAAAATGAAATGGAAAA+AGG 0.350565 4_3:+54578508 Msa0648160:CDS
CATGCAAGAAATGGACAAAA+AGG 0.359212 4_3:+54579929 Msa0648160:CDS
GGCTGATTCAAAATCTCCTT+GGG 0.370234 4_3:+54580034 Msa0648160:CDS
TTTCATCAAGAGAGAATGAT+AGG 0.372720 4_3:-54579015 None:intergenic
ACACTTATAAAGTACCATTA+TGG 0.373714 4_3:-54578359 None:intergenic
GCAGTTGCTAAACATATCTA+TGG 0.381434 4_3:+54580322 Msa0648160:CDS
TAGACAGGCCTTGCTTAACT+TGG 0.385229 4_3:-54580090 None:intergenic
GGAACGTGCATATGATCTTC+AGG 0.385331 4_3:-54578542 None:intergenic
GTTCCTTCAGCATTGCTTGT+TGG 0.387997 4_3:-54578689 None:intergenic
GTGCATATATAATACTATAA+TGG 0.393680 4_3:+54578165 Msa0648160:exon
TTGTCATTTCTTGAATTGAT+TGG 0.394866 4_3:-54580010 None:intergenic
ACCACAAGACAAACCCCTTT+GGG 0.407424 4_3:+54578646 Msa0648160:CDS
AAGATGACAAGACACCTATA+TGG 0.407784 4_3:+54578948 Msa0648160:CDS
GCCAGTGGAACCTATGGCTT+TGG 0.408139 4_3:+54580387 Msa0648160:CDS
ATACATGTAAGAAAGAAATA+TGG 0.415159 4_3:-54580061 None:intergenic
TATTGTCCACTTGGACTAAC+CGG 0.416633 4_3:-54578211 None:intergenic
ACAAAGATGGCAAAATGAAA+TGG 0.416873 4_3:+54578501 Msa0648160:CDS
TCCACGTTTCTCCTCCATAA+TGG 0.418365 4_3:+54578345 Msa0648160:CDS
AGGCTGATTCAAAATCTCCT+TGG 0.423311 4_3:+54580033 Msa0648160:CDS
CACCACAAGACAAACCCCTT+TGG 0.423718 4_3:+54578645 Msa0648160:CDS
GTTGTCATATCCAATTTGAT+TGG 0.424756 4_3:+54580364 Msa0648160:CDS
CTCTAAGGGGTTAGATAGAC+AGG 0.433414 4_3:-54580105 None:intergenic
GAGGAGAAACGTGGATTGAT+AGG 0.433511 4_3:-54578337 None:intergenic
TTGTCATATCCAATTTGATT+GGG 0.434336 4_3:+54580365 Msa0648160:CDS
TTGTTGGATATTTAATCAAA+TGG 0.434523 4_3:-54578673 None:intergenic
TCCCAAAGGGGTTTGTCTTG+TGG 0.436342 4_3:-54578647 None:intergenic
ATAGTTTGAGAATCATCAAT+TGG 0.437770 4_3:-54578289 None:intergenic
TAGGCTATACATGCAAGAAA+TGG 0.441669 4_3:+54579920 Msa0648160:CDS
CCTTCCTCACCATTCCATAT+AGG 0.442303 4_3:-54578962 None:intergenic
TGGTGATGGTTACTCTCTCA+TGG 0.446072 4_3:+54578739 Msa0648160:CDS
CAATAAATGATGTGATTACT+GGG 0.449069 4_3:+54579880 Msa0648160:CDS
AATCAAATGGATTTCCCAAA+GGG 0.450613 4_3:-54578660 None:intergenic
GATTGGTGTTGCTTAGTACT+AGG 0.452198 4_3:+54579973 Msa0648160:CDS
GGCTTGTACTTTACAATGAC+AGG 0.453421 4_3:+54580427 Msa0648160:CDS
TCCGAAAACATATGAACATA+GGG 0.457117 4_3:-54578248 None:intergenic
GATTGGGCCAGTGGAACCTA+TGG 0.464336 4_3:+54580381 Msa0648160:CDS
GATATGGAGCTGAAATTAAG+AGG 0.473758 4_3:+54580203 Msa0648160:CDS
ACACTTGTTATCTCCAAAGA+AGG 0.477485 4_3:+54578835 Msa0648160:CDS
AGACAGGCCTTGCTTAACTT+GGG 0.483628 4_3:-54580089 None:intergenic
AAAACAATCAAGTCTAAGCT+TGG 0.484750 4_3:+54579040 Msa0648160:CDS
GCTTTCCAAATAAACTCTAA+GGG 0.494104 4_3:-54580119 None:intergenic
GGAAAAGATAGAGGAAGAGA+AGG 0.494447 4_3:-54578797 None:intergenic
AACATCAAATTCCACAGGAT+TGG 0.500187 4_3:+54579956 Msa0648160:CDS
ATAAATATTGAAACTTGTCT+CGG 0.505870 4_3:-54578100 None:intergenic
GCCAAAGCCATAGGTTCCAC+TGG 0.507030 4_3:-54580388 None:intergenic
ATCCAATTTGATTGGGCCAG+TGG 0.512219 4_3:+54580372 Msa0648160:CDS
GGATGGTTTGCCAAAGCCAT+AGG 0.516215 4_3:-54580397 None:intergenic
ATCCGAAAACATATGAACAT+AGG 0.525975 4_3:-54578249 None:intergenic
GTAAAGTACAAGCCTTTCAC+AGG 0.526010 4_3:-54580418 None:intergenic
TTGGCAAACCATCCTGTGAA+AGG 0.530246 4_3:+54580406 Msa0648160:CDS
TTGCGTGAAGGAAAAGATAG+AGG 0.531251 4_3:-54578806 None:intergenic
CTTCATCATGCACTTGGTGA+TGG 0.536861 4_3:+54578725 Msa0648160:CDS
AAAAGGAGAATATGGTTGAA+GGG 0.537806 4_3:-54578874 None:intergenic
TAAATATTGAAACTTGTCTC+GGG 0.538146 4_3:-54578099 None:intergenic
GTTAAGATGATGGTTACCTC+AGG 0.538389 4_3:-54580454 None:intergenic
TTCAAACTTCATCATGCACT+TGG 0.538549 4_3:+54578719 Msa0648160:CDS
TTTGGAGATAACAAGTGTGA+TGG 0.547485 4_3:-54578830 None:intergenic
AGTACAAGCCTTTCACAGGA+TGG 0.556400 4_3:-54580414 None:intergenic
GGTGATGGTTACTCTCTCAT+GGG 0.557425 4_3:+54578740 Msa0648160:CDS
TAATCAAATGGATTTCCCAA+AGG 0.558077 4_3:-54578661 None:intergenic
TTATGTGTCAAAGATTATGA+TGG 0.567297 4_3:+54578616 Msa0648160:CDS
GACAGGCCTTGCTTAACTTG+GGG 0.567657 4_3:-54580088 None:intergenic
AAACTAGAGAGTTAAGATGA+TGG 0.578017 4_3:-54580464 None:intergenic
CACTTGTTATCTCCAAAGAA+GGG 0.584946 4_3:+54578836 Msa0648160:CDS
CTTTCCAAATAAACTCTAAG+GGG 0.586770 4_3:-54580118 None:intergenic
CCTATATGGAATGGTGAGGA+AGG 0.587168 4_3:+54578962 Msa0648160:CDS
GCAAGAACATCAAATTCCAC+AGG 0.588042 4_3:+54579951 Msa0648160:CDS
CTTTGAATATGTAACAGAGC+CGG 0.590117 4_3:+54578192 Msa0648160:CDS
GTGTTAAAGTATTGTCCACT+TGG 0.592800 4_3:-54578220 None:intergenic
TGATAGGTAAGAAGACATGT+TGG 0.596085 4_3:-54578321 None:intergenic
GCTCCATCCAAAATCAGAGA+AGG 0.601636 4_3:-54578903 None:intergenic
GACAAGACACCTATATGGAA+TGG 0.604148 4_3:+54578953 Msa0648160:CDS
TATCCAACAAGCAATGCTGA+AGG 0.616041 4_3:+54578686 Msa0648160:CDS
AAGTGTGATGGTTTGCGTGA+AGG 0.622326 4_3:-54578818 None:intergenic
ACAGAGCCGGTTAGTCCAAG+TGG 0.626388 4_3:+54578205 Msa0648160:CDS
ATCAATCCCCAAGTTAAGCA+AGG 0.627042 4_3:+54580082 Msa0648160:CDS
ATCAATTCAAGAAATGACAA+AGG 0.634277 4_3:+54580013 Msa0648160:CDS
GCTGAAATTAAGAGGACATG+AGG 0.640508 4_3:+54580211 Msa0648160:CDS
TACAATGACAGGTGGACCTG+AGG 0.642479 4_3:+54580438 Msa0648160:CDS
ATCAAATGGATTTCCCAAAG+GGG 0.644210 4_3:-54578659 None:intergenic
CTTATAAAGTACCATTATGG+AGG 0.648669 4_3:-54578356 None:intergenic
AATCAAGTCTAAGCTTGGAG+TGG 0.650359 4_3:+54579045 Msa0648160:CDS
CTGATTCAAAATCTCCTTGG+GGG 0.654193 4_3:+54580036 Msa0648160:CDS
ACCATTATGGAGGAGAAACG+TGG 0.657361 4_3:-54578346 None:intergenic
GCTGATTCAAAATCTCCTTG+GGG 0.657580 4_3:+54580035 Msa0648160:CDS
ATATAGGTGAGAGACAAAGA+TGG 0.658680 4_3:+54578488 Msa0648160:intron
GATAGGTTTGATAGTACACA+AGG 0.661721 4_3:-54578998 None:intergenic
ACTAAGCAACACCAATCCTG+TGG 0.666809 4_3:-54579967 None:intergenic
TTGTACTTTACAATGACAGG+TGG 0.673805 4_3:+54580430 Msa0648160:CDS
GACACCTATATGGAATGGTG+AGG 0.677689 4_3:+54578958 Msa0648160:CDS
CCGAAAACATATGAACATAG+GGG 0.692361 4_3:-54578247 None:intergenic
AAAACATATGAACATAGGGG+TGG 0.715907 4_3:-54578244 None:intergenic
AATAAATGATGTGATTACTG+GGG 0.718291 4_3:+54579881 Msa0648160:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTATTAATGAAACTTTTA+AGG - chr4_3:54578398-54578417 None:intergenic 10.0%
!! TATATTCTACATGTTTATAT+AGG + chr4_3:54578472-54578491 Msa0648160:intron 15.0%
!! CAATTGAAAAATTGTAATTA+AGG - chr4_3:54579797-54579816 None:intergenic 15.0%
!! GAAAAATAAATAAAAGACTT+GGG - chr4_3:54580259-54580278 None:intergenic 15.0%
!! TGAAAAATAAATAAAAGACT+TGG - chr4_3:54580260-54580279 None:intergenic 15.0%
!!! ATTAGTCTCTACTTTATAAT+AGG + chr4_3:54578135-54578154 Msa0648160:five_prime_UTR 20.0%
!! TTAGTCTCTACTTTATAATA+GGG + chr4_3:54578136-54578155 Msa0648160:five_prime_UTR 20.0%
!! GTGCATATATAATACTATAA+TGG + chr4_3:54578165-54578184 Msa0648160:exon 20.0%
!!! TGTACATTTTTTTTTTGTTG+AGG + chr4_3:54578425-54578444 Msa0648160:intron 20.0%
!!! ATTCAATTGATTCACTTTTT+GGG - chr4_3:54578574-54578593 None:intergenic 20.0%
!!! AATTCAATTGATTCACTTTT+TGG - chr4_3:54578575-54578594 None:intergenic 20.0%
!! TTGTTGGATATTTAATCAAA+TGG - chr4_3:54578676-54578695 None:intergenic 20.0%
!! AAAAATTGTAATTAAGGTGT+AGG - chr4_3:54579791-54579810 None:intergenic 20.0%
!! ATACATGTAAGAAAGAAATA+TGG - chr4_3:54580064-54580083 None:intergenic 20.0%
!! TTCATATGTTTTCGGATTTT+TGG + chr4_3:54578255-54578274 Msa0648160:CDS 25.0%
! ATAGTTTGAGAATCATCAAT+TGG - chr4_3:54578292-54578311 None:intergenic 25.0%
!! ACACTTATAAAGTACCATTA+TGG - chr4_3:54578362-54578381 None:intergenic 25.0%
! TTATGTGTCAAAGATTATGA+TGG + chr4_3:54578616-54578635 Msa0648160:CDS 25.0%
!! ATCTTTAATCATTGAGCTTT+TGG - chr4_3:54578933-54578952 None:intergenic 25.0%
! TCTAGCATCTTATCTAATAT+AGG - chr4_3:54579320-54579339 None:intergenic 25.0%
! AAGCTATAAGAGAAACTATT+AGG + chr4_3:54579428-54579447 Msa0648160:intron 25.0%
!! TTTTGACCTTGAAATTCTTT+AGG - chr4_3:54579614-54579633 None:intergenic 25.0%
! ACAATAAATGATGTGATTAC+TGG + chr4_3:54579879-54579898 Msa0648160:CDS 25.0%
! CAATAAATGATGTGATTACT+GGG + chr4_3:54579880-54579899 Msa0648160:CDS 25.0%
! AATAAATGATGTGATTACTG+GGG + chr4_3:54579881-54579900 Msa0648160:CDS 25.0%
!! TTGTCATTTCTTGAATTGAT+TGG - chr4_3:54580013-54580032 None:intergenic 25.0%
! ATCAATTCAAGAAATGACAA+AGG + chr4_3:54580013-54580032 Msa0648160:CDS 25.0%
! AAGCACAAAAAATAATCAAG+AGG + chr4_3:54580138-54580157 Msa0648160:CDS 25.0%
! TTGTCATATCCAATTTGATT+GGG + chr4_3:54580365-54580384 Msa0648160:CDS 25.0%
TCCGAAAACATATGAACATA+GGG - chr4_3:54578251-54578270 None:intergenic 30.0%
ATCCGAAAACATATGAACAT+AGG - chr4_3:54578252-54578271 None:intergenic 30.0%
! CTTATAAAGTACCATTATGG+AGG - chr4_3:54578359-54578378 None:intergenic 30.0%
ACAAAGATGGCAAAATGAAA+TGG + chr4_3:54578501-54578520 Msa0648160:CDS 30.0%
TGGCAAAATGAAATGGAAAA+AGG + chr4_3:54578508-54578527 Msa0648160:CDS 30.0%
AATGAAATGGAAAAAGGTAG+AGG + chr4_3:54578514-54578533 Msa0648160:CDS 30.0%
!!! GATTCACTTTTTGGGAATAT+TGG - chr4_3:54578566-54578585 None:intergenic 30.0%
! AATCAAATGGATTTCCCAAA+GGG - chr4_3:54578663-54578682 None:intergenic 30.0%
! TAATCAAATGGATTTCCCAA+AGG - chr4_3:54578664-54578683 None:intergenic 30.0%
AAAAGGAGAATATGGTTGAA+GGG - chr4_3:54578877-54578896 None:intergenic 30.0%
AAAAAGGAGAATATGGTTGA+AGG - chr4_3:54578878-54578897 None:intergenic 30.0%
GGAATTGAAAAAGGAGAATA+TGG - chr4_3:54578885-54578904 None:intergenic 30.0%
ATCAGAGAAGGAATTGAAAA+AGG - chr4_3:54578894-54578913 None:intergenic 30.0%
! TTCAATTCCTTCTCTGATTT+TGG + chr4_3:54578896-54578915 Msa0648160:CDS 30.0%
TTTCATCAAGAGAGAATGAT+AGG - chr4_3:54579018-54579037 None:intergenic 30.0%
AAAACAATCAAGTCTAAGCT+TGG + chr4_3:54579040-54579059 Msa0648160:CDS 30.0%
TAGAAATGACAACATTAGAG+AGG + chr4_3:54579278-54579297 Msa0648160:intron 30.0%
AGAAATGACAACATTAGAGA+GGG + chr4_3:54579279-54579298 Msa0648160:intron 30.0%
GACTTGTGAATTCTATAGTT+AGG + chr4_3:54579375-54579394 Msa0648160:intron 30.0%
TTAGGAGAGTAAATCAGATA+GGG + chr4_3:54579393-54579412 Msa0648160:intron 30.0%
TAGGCTCAATCTATTAGAAT+AGG + chr4_3:54579569-54579588 Msa0648160:intron 30.0%
TTTCAGTTGTATCAACCATT+AGG - chr4_3:54579668-54579687 None:intergenic 30.0%
TTGCTTAGTACTAGGAATAT+TGG + chr4_3:54579981-54580000 Msa0648160:CDS 30.0%
CTTTCCAAATAAACTCTAAG+GGG - chr4_3:54580121-54580140 None:intergenic 30.0%
GCTTTCCAAATAAACTCTAA+GGG - chr4_3:54580122-54580141 None:intergenic 30.0%
TGCTTTCCAAATAAACTCTA+AGG - chr4_3:54580123-54580142 None:intergenic 30.0%
!! TCACTGTTTTTCTCATTGAA+TGG + chr4_3:54580174-54580193 Msa0648160:CDS 30.0%
GTTGTCATATCCAATTTGAT+TGG + chr4_3:54580364-54580383 Msa0648160:CDS 30.0%
CTTTGAATATGTAACAGAGC+CGG + chr4_3:54578192-54578211 Msa0648160:CDS 35.0%
!! GTGTTAAAGTATTGTCCACT+TGG - chr4_3:54578223-54578242 None:intergenic 35.0%
AAAACATATGAACATAGGGG+TGG - chr4_3:54578247-54578266 None:intergenic 35.0%
CCGAAAACATATGAACATAG+GGG - chr4_3:54578250-54578269 None:intergenic 35.0%
! CCCCTATGTTCATATGTTTT+CGG + chr4_3:54578247-54578266 Msa0648160:CDS 35.0%
TGATAGGTAAGAAGACATGT+TGG - chr4_3:54578324-54578343 None:intergenic 35.0%
ATATAGGTGAGAGACAAAGA+TGG + chr4_3:54578488-54578507 Msa0648160:intron 35.0%
! ATCAAATGGATTTCCCAAAG+GGG - chr4_3:54578662-54578681 None:intergenic 35.0%
TTCAAACTTCATCATGCACT+TGG + chr4_3:54578719-54578738 Msa0648160:CDS 35.0%
TTTGGAGATAACAAGTGTGA+TGG - chr4_3:54578833-54578852 None:intergenic 35.0%
!! ACACTTGTTATCTCCAAAGA+AGG + chr4_3:54578835-54578854 Msa0648160:CDS 35.0%
!! CACTTGTTATCTCCAAAGAA+GGG + chr4_3:54578836-54578855 Msa0648160:CDS 35.0%
! ATTCCTTCTCTGATTTTGGA+TGG + chr4_3:54578900-54578919 Msa0648160:CDS 35.0%
AAGATGACAAGACACCTATA+TGG + chr4_3:54578948-54578967 Msa0648160:CDS 35.0%
! GATAGGTTTGATAGTACACA+AGG - chr4_3:54579001-54579020 None:intergenic 35.0%
TGTTGTACGAGACATAATGT+TGG + chr4_3:54579166-54579185 Msa0648160:intron 35.0%
AAGCAAGCGTAGCAAAAATA+AGG + chr4_3:54579214-54579233 Msa0648160:intron 35.0%
AGATGCTAGAAACTAGACTT+AGG + chr4_3:54579330-54579349 Msa0648160:intron 35.0%
! AAACTAGACTTAGGTGGTTT+TGG + chr4_3:54579339-54579358 Msa0648160:intron 35.0%
GTTAGGAGAGTAAATCAGAT+AGG + chr4_3:54579392-54579411 Msa0648160:intron 35.0%
TAGGAGAGTAAATCAGATAG+GGG + chr4_3:54579394-54579413 Msa0648160:intron 35.0%
!!! GGATAAGGTTGGTTGTTTTT+GGG + chr4_3:54579543-54579562 Msa0648160:intron 35.0%
TCGAAGCCTAAAGAATTTCA+AGG + chr4_3:54579605-54579624 Msa0648160:intron 35.0%
TCCAAGTTCATGCAATTTGT+TGG + chr4_3:54579760-54579779 Msa0648160:intron 35.0%
! CCAAGTTCATGCAATTTGTT+GGG + chr4_3:54579761-54579780 Msa0648160:intron 35.0%
!! CAAGTTCATGCAATTTGTTG+GGG + chr4_3:54579762-54579781 Msa0648160:intron 35.0%
!! ATTACTGGGGTCATTTTCTA+TGG + chr4_3:54579894-54579913 Msa0648160:CDS 35.0%
!! GGGTCATTTTCTATGGAATT+AGG + chr4_3:54579901-54579920 Msa0648160:CDS 35.0%
TAGGCTATACATGCAAGAAA+TGG + chr4_3:54579920-54579939 Msa0648160:CDS 35.0%
CATGCAAGAAATGGACAAAA+AGG + chr4_3:54579929-54579948 Msa0648160:CDS 35.0%
AACATCAAATTCCACAGGAT+TGG + chr4_3:54579956-54579975 Msa0648160:CDS 35.0%
CTAACCCCTTAGAGTTTATT+TGG + chr4_3:54580114-54580133 Msa0648160:CDS 35.0%
CATTGAATGGCTCTTAGATA+TGG + chr4_3:54580187-54580206 Msa0648160:CDS 35.0%
GATATGGAGCTGAAATTAAG+AGG + chr4_3:54580203-54580222 Msa0648160:CDS 35.0%
AAATTAAGAGGACATGAGGT+GGG + chr4_3:54580215-54580234 Msa0648160:intron 35.0%
TTGCTATAAACATGTGTTGC+AGG + chr4_3:54580300-54580319 Msa0648160:intron 35.0%
GCAGTTGCTAAACATATCTA+TGG + chr4_3:54580322-54580341 Msa0648160:CDS 35.0%
TTGTACTTTACAATGACAGG+TGG + chr4_3:54580430-54580449 Msa0648160:CDS 35.0%
TATTGTCCACTTGGACTAAC+CGG - chr4_3:54578214-54578233 None:intergenic 40.0%
TATCCAACAAGCAATGCTGA+AGG + chr4_3:54578686-54578705 Msa0648160:CDS 40.0%
GGAAAAGATAGAGGAAGAGA+AGG - chr4_3:54578800-54578819 None:intergenic 40.0%
TTGCGTGAAGGAAAAGATAG+AGG - chr4_3:54578809-54578828 None:intergenic 40.0%
CACTTGAAAAAGCCCTTCTT+TGG - chr4_3:54578851-54578870 None:intergenic 40.0%
!!! CAAAGAAGGGCTTTTTCAAG+TGG + chr4_3:54578849-54578868 Msa0648160:CDS 40.0%
GACAAGACACCTATATGGAA+TGG + chr4_3:54578953-54578972 Msa0648160:CDS 40.0%
AATCAAGTCTAAGCTTGGAG+TGG + chr4_3:54579045-54579064 Msa0648160:CDS 40.0%
GATCCTCTATCGATGTAGTA+TGG + chr4_3:54579105-54579124 Msa0648160:intron 40.0%
TCACCATACTACATCGATAG+AGG - chr4_3:54579111-54579130 None:intergenic 40.0%
GTACGAGACATAATGTTGGA+CGG + chr4_3:54579170-54579189 Msa0648160:intron 40.0%
CGCTTGCTTTATGTTTGTGT+TGG - chr4_3:54579203-54579222 None:intergenic 40.0%
AGGATGTTGTGTTGAATGTG+TGG + chr4_3:54579234-54579253 Msa0648160:intron 40.0%
AACATTAGAGAGGGAGAGTT+GGG + chr4_3:54579288-54579307 Msa0648160:intron 40.0%
TGCTAGAAACTAGACTTAGG+TGG + chr4_3:54579333-54579352 Msa0648160:intron 40.0%
!! GGGATAAGGTTGGTTGTTTT+TGG + chr4_3:54579542-54579561 Msa0648160:intron 40.0%
!!! GTTGGTTGTTTTTGGGAACT+AGG + chr4_3:54579550-54579569 Msa0648160:intron 40.0%
ATCAACCATTAGGCTTAGAG+AGG - chr4_3:54579658-54579677 None:intergenic 40.0%
GCTGCAAAATCATATTGCAG+CGG + chr4_3:54579730-54579749 Msa0648160:intron 40.0%
AAATCATATTGCAGCGGTAG+AGG + chr4_3:54579736-54579755 Msa0648160:intron 40.0%
CCCAACAAATTGCATGAACT+TGG - chr4_3:54579764-54579783 None:intergenic 40.0%
GCAAGAACATCAAATTCCAC+AGG + chr4_3:54579951-54579970 Msa0648160:CDS 40.0%
!! GATTGGTGTTGCTTAGTACT+AGG + chr4_3:54579973-54579992 Msa0648160:CDS 40.0%
! AGGCTGATTCAAAATCTCCT+TGG + chr4_3:54580033-54580052 Msa0648160:CDS 40.0%
! GGCTGATTCAAAATCTCCTT+GGG + chr4_3:54580034-54580053 Msa0648160:CDS 40.0%
! GCTGATTCAAAATCTCCTTG+GGG + chr4_3:54580035-54580054 Msa0648160:CDS 40.0%
CTGATTCAAAATCTCCTTGG+GGG + chr4_3:54580036-54580055 Msa0648160:CDS 40.0%
AAAGAAATATGGTTCCCCCA+AGG - chr4_3:54580053-54580072 None:intergenic 40.0%
ATCAATCCCCAAGTTAAGCA+AGG + chr4_3:54580082-54580101 Msa0648160:CDS 40.0%
GCTGAAATTAAGAGGACATG+AGG + chr4_3:54580211-54580230 Msa0648160:CDS 40.0%
GAAATTAAGAGGACATGAGG+TGG + chr4_3:54580214-54580233 Msa0648160:intron 40.0%
GTAAAGTACAAGCCTTTCAC+AGG - chr4_3:54580421-54580440 None:intergenic 40.0%
GGCTTGTACTTTACAATGAC+AGG + chr4_3:54580427-54580446 Msa0648160:CDS 40.0%
! GTTAAGATGATGGTTACCTC+AGG - chr4_3:54580457-54580476 None:intergenic 40.0%
! GAGGAGAAACGTGGATTGAT+AGG - chr4_3:54578340-54578359 None:intergenic 45.0%
TCCACGTTTCTCCTCCATAA+TGG + chr4_3:54578345-54578364 Msa0648160:CDS 45.0%
ACCATTATGGAGGAGAAACG+TGG - chr4_3:54578349-54578368 None:intergenic 45.0%
GGAACGTGCATATGATCTTC+AGG - chr4_3:54578545-54578564 None:intergenic 45.0%
ACCACAAGACAAACCCCTTT+GGG + chr4_3:54578646-54578665 Msa0648160:CDS 45.0%
GTTCCTTCAGCATTGCTTGT+TGG - chr4_3:54578692-54578711 None:intergenic 45.0%
! CTTCATCATGCACTTGGTGA+TGG + chr4_3:54578725-54578744 Msa0648160:CDS 45.0%
!! TGGTGATGGTTACTCTCTCA+TGG + chr4_3:54578739-54578758 Msa0648160:CDS 45.0%
! GGTGATGGTTACTCTCTCAT+GGG + chr4_3:54578740-54578759 Msa0648160:CDS 45.0%
! AAGTGTGATGGTTTGCGTGA+AGG - chr4_3:54578821-54578840 None:intergenic 45.0%
GCTCCATCCAAAATCAGAGA+AGG - chr4_3:54578906-54578925 None:intergenic 45.0%
GACACCTATATGGAATGGTG+AGG + chr4_3:54578958-54578977 Msa0648160:CDS 45.0%
CCTTCCTCACCATTCCATAT+AGG - chr4_3:54578965-54578984 None:intergenic 45.0%
CCTATATGGAATGGTGAGGA+AGG + chr4_3:54578962-54578981 Msa0648160:CDS 45.0%
CAACATTAGAGAGGGAGAGT+TGG + chr4_3:54579287-54579306 Msa0648160:intron 45.0%
ACATTAGAGAGGGAGAGTTG+GGG + chr4_3:54579289-54579308 Msa0648160:intron 45.0%
ATGTAACCAACCCCACTTAG+TGG + chr4_3:54579521-54579540 Msa0648160:intron 45.0%
TGTAACCAACCCCACTTAGT+GGG + chr4_3:54579522-54579541 Msa0648160:intron 45.0%
CAACCTTATCCCACTAAGTG+GGG - chr4_3:54579534-54579553 None:intergenic 45.0%
CCAACCTTATCCCACTAAGT+GGG - chr4_3:54579535-54579554 None:intergenic 45.0%
ACCAACCTTATCCCACTAAG+TGG - chr4_3:54579536-54579555 None:intergenic 45.0%
ACTAAGCAACACCAATCCTG+TGG - chr4_3:54579970-54579989 None:intergenic 45.0%
AGACAGGCCTTGCTTAACTT+GGG - chr4_3:54580092-54580111 None:intergenic 45.0%
TAGACAGGCCTTGCTTAACT+TGG - chr4_3:54580093-54580112 None:intergenic 45.0%
! CTCTAAGGGGTTAGATAGAC+AGG - chr4_3:54580108-54580127 None:intergenic 45.0%
ATCCAATTTGATTGGGCCAG+TGG + chr4_3:54580372-54580391 Msa0648160:CDS 45.0%
TTCCACTGGCCCAATCAAAT+TGG - chr4_3:54580377-54580396 None:intergenic 45.0%
TTGGCAAACCATCCTGTGAA+AGG + chr4_3:54580406-54580425 Msa0648160:CDS 45.0%
AGTACAAGCCTTTCACAGGA+TGG - chr4_3:54580417-54580436 None:intergenic 45.0%
CACCACAAGACAAACCCCTT+TGG + chr4_3:54578645-54578664 Msa0648160:CDS 50.0%
TCCCAAAGGGGTTTGTCTTG+TGG - chr4_3:54578650-54578669 None:intergenic 50.0%
CTTATCCCACTAAGTGGGGT+TGG - chr4_3:54579530-54579549 None:intergenic 50.0%
CAACCCCACTTAGTGGGATA+AGG + chr4_3:54579528-54579547 Msa0648160:intron 50.0%
CCCACTTAGTGGGATAAGGT+TGG + chr4_3:54579532-54579551 Msa0648160:intron 50.0%
!!! AGAGAGGACTGGTTTTCGAG+CGG - chr4_3:54579642-54579661 None:intergenic 50.0%
CCATTAGGCTTAGAGAGGAC+TGG - chr4_3:54579653-54579672 None:intergenic 50.0%
CCAGTCCTCTCTAAGCCTAA+TGG + chr4_3:54579650-54579669 Msa0648160:intron 50.0%
! GACAGGCCTTGCTTAACTTG+GGG - chr4_3:54580091-54580110 None:intergenic 50.0%
! GGATGGTTTGCCAAAGCCAT+AGG - chr4_3:54580400-54580419 None:intergenic 50.0%
TACAATGACAGGTGGACCTG+AGG + chr4_3:54580438-54580457 Msa0648160:CDS 50.0%
! ACAGAGCCGGTTAGTCCAAG+TGG + chr4_3:54578205-54578224 Msa0648160:CDS 55.0%
GATTGGGCCAGTGGAACCTA+TGG + chr4_3:54580381-54580400 Msa0648160:CDS 55.0%
GCCAGTGGAACCTATGGCTT+TGG + chr4_3:54580387-54580406 Msa0648160:CDS 55.0%
GCCAAAGCCATAGGTTCCAC+TGG - chr4_3:54580391-54580410 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 54578102 54580483 54578102 ID=Msa0648160;Name=Msa0648160
chr4_3 mRNA 54578102 54580483 54578102 ID=Msa0648160-mRNA-1;Parent=Msa0648160;Name=Msa0648160-mRNA-1;_AED=0.43;_eAED=0.43;_QI=82|1|0.75|1|1|1|4|0|423
chr4_3 exon 54578102 54578366 54578102 ID=Msa0648160-mRNA-1:exon:13851;Parent=Msa0648160-mRNA-1
chr4_3 exon 54578494 54579066 54578494 ID=Msa0648160-mRNA-1:exon:13852;Parent=Msa0648160-mRNA-1
chr4_3 exon 54579879 54580232 54579879 ID=Msa0648160-mRNA-1:exon:13853;Parent=Msa0648160-mRNA-1
chr4_3 exon 54580322 54580483 54580322 ID=Msa0648160-mRNA-1:exon:13854;Parent=Msa0648160-mRNA-1
chr4_3 five_prime_UTR 54578102 54578183 54578102 ID=Msa0648160-mRNA-1:five_prime_utr;Parent=Msa0648160-mRNA-1
chr4_3 CDS 54578184 54578366 54578184 ID=Msa0648160-mRNA-1:cds;Parent=Msa0648160-mRNA-1
chr4_3 CDS 54578494 54579066 54578494 ID=Msa0648160-mRNA-1:cds;Parent=Msa0648160-mRNA-1
chr4_3 CDS 54579879 54580232 54579879 ID=Msa0648160-mRNA-1:cds;Parent=Msa0648160-mRNA-1
chr4_3 CDS 54580322 54580483 54580322 ID=Msa0648160-mRNA-1:cds;Parent=Msa0648160-mRNA-1
Gene Sequence

>Msa0648160

ATGGACAACTTTGAATATGTAACAGAGCCGGTTAGTCCAAGTGGACAATACTTTAACACACCACCCCTATGTTCATATGTTTTCGGATTTTTGGAATCACAAATTCCAATTGATGATTCTCAAACTATGTATTTGTTCCAACATGTCTTCTTACCTATCAATCCACGTTTCTCCTCCATAATGGTGAGAGACAAAGATGGCAAAATGAAATGGAAAAAGGTAGAGGTGAAGCCTGAAGATCATATGCACGTTCCAATATTCCCAAAAAGTGAATCAATTGAATTGTATGATCAATATTTTGATGATTATGTGTCAAAGATTATGATGGAAAGAACACCACAAGACAAACCCCTTTGGGAAATCCATTTGATTAAATATCCAACAAGCAATGCTGAAGGAACTTTGATATTCAAACTTCATCATGCACTTGGTGATGGTTACTCTCTCATGGGTGCTCTTCTATCTTGTCTACAAAGAGCTGATGATCCTTCTCTTCCTCTATCTTTTCCTTCACGCAAACCATCACACTTGTTATCTCCAAAGAAGGGCTTTTTCAAGTGGTTCCCTTCAACCATATTCTCCTTTTTCAATTCCTTCTCTGATTTTGGATGGAGCATAGCCAAAAGCTCAATGATTAAAGATGACAAGACACCTATATGGAATGGTGAGGAAGGAGTTGAGTCTCAGCCTTGTGTACTATCAAACCTATCATTCTCTCTTGATGAAATCAAAACAATCAAGTCTAAGCTTGGAGTGACAATAAATGATGTGATTACTGGGGTCATTTTCTATGGAATTAGGCTATACATGCAAGAAATGGACAAAAAGGCAAGAACATCAAATTCCACAGGATTGGTGTTGCTTAGTACTAGGAATATTGGAAGTTACCAATCAATTCAAGAAATGACAAAGGCTGATTCAAAATCTCCTTGGGGGAACCATATTTCTTTCTTACATGTATCAATCCCCAAGTTAAGCAAGGCCTGTCTATCTAACCCCTTAGAGTTTATTTGGAAAGCACAAAAAATAATCAAGAGGAAGAGAAATACTTTCACTGTTTTTCTCATTGAATGGCTCTTAGATATGGAGCTGAAATTAAGAGGACATGAGGCAGTTGCTAAACATATCTATGGAACATTGAGAAATTCAAGTGTTGTCATATCCAATTTGATTGGGCCAGTGGAACCTATGGCTTTGGCAAACCATCCTGTGAAAGGCTTGTACTTTACAATGACAGGTGGACCTGAGGTAACCATCATCTTAACTCTCTAG

Protein sequence

>Msa0648160

MDNFEYVTEPVSPSGQYFNTPPLCSYVFGFLESQIPIDDSQTMYLFQHVFLPINPRFSSIMVRDKDGKMKWKKVEVKPEDHMHVPIFPKSESIELYDQYFDDYVSKIMMERTPQDKPLWEIHLIKYPTSNAEGTLIFKLHHALGDGYSLMGALLSCLQRADDPSLPLSFPSRKPSHLLSPKKGFFKWFPSTIFSFFNSFSDFGWSIAKSSMIKDDKTPIWNGEEGVESQPCVLSNLSFSLDEIKTIKSKLGVTINDVITGVIFYGIRLYMQEMDKKARTSNSTGLVLLSTRNIGSYQSIQEMTKADSKSPWGNHISFLHVSIPKLSKACLSNPLEFIWKAQKIIKRKRNTFTVFLIEWLLDMELKLRGHEAVAKHIYGTLRNSSVVISNLIGPVEPMALANHPVKGLYFTMTGGPEVTIILTL*