AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0648260


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0648260 MtrunA17_Chr4g0040261 98.558 416 6 0 1 416 34 449 0.0 853
Msa0648260 MtrunA17_Chr4g0040271 92.584 418 30 1 1 418 1 417 0.0 801
Msa0648260 MtrunA17_Chr4g0040251 85.577 416 60 0 1 416 1 416 0.0 751
Msa0648260 MtrunA17_Chr4g0040221 70.238 420 117 4 1 416 1 416 0.0 570
Msa0648260 MtrunA17_Chr4g0040011 65.176 425 141 4 1 419 9 432 0.0 550
Msa0648260 MtrunA17_Chr4g0040001 65.035 429 140 5 1 420 1 428 0.0 547
Msa0648260 MtrunA17_Chr4g0040231 63.615 426 144 4 4 420 5 428 0.0 536
Msa0648260 MtrunA17_Chr7g0217051 61.151 417 161 1 5 420 7 423 0.0 531
Msa0648260 MtrunA17_Chr7g0248011 52.358 424 198 4 2 423 3 424 3.70e-151 437
Msa0648260 MtrunA17_Chr6g0457271 57.735 362 148 4 66 423 5 365 5.70e-145 417
Msa0648260 MtrunA17_Chr6g0457281 55.670 291 123 3 86 371 1 290 4.75e-112 330
Msa0648260 MtrunA17_Chr1g0147071 27.854 438 275 12 9 420 10 432 6.04e-45 162
Msa0648260 MtrunA17_Chr5g0393471 27.778 234 164 4 190 420 65 296 1.26e-19 89.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0648260 AT3G49190.1 29.613 439 273 9 9 420 18 447 2.91e-54 188
Msa0648260 AT5G53390.1 29.412 425 273 9 9 415 15 430 2.06e-53 185
Msa0648260 AT5G16350.3 29.829 409 258 10 9 404 7 399 4.57e-53 184
Msa0648260 AT5G12420.2 29.717 424 257 10 9 404 7 417 8.19e-53 183
Msa0648260 AT5G12420.1 29.717 424 257 10 9 404 7 417 1.04e-52 183
Msa0648260 AT5G16350.1 28.169 426 263 9 9 404 7 419 2.57e-51 180
Msa0648260 AT3G49210.1 28.668 443 275 10 9 415 26 463 7.31e-48 171
Msa0648260 AT5G22490.1 29.452 438 265 15 10 420 12 432 2.94e-47 169
Msa0648260 AT3G49200.1 28.111 434 280 11 9 415 26 454 4.73e-46 166
Msa0648260 AT2G38995.2 29.837 429 271 12 9 420 21 436 1.81e-45 164
Msa0648260 AT5G53380.1 27.752 436 278 11 1 413 1 422 1.81e-44 161
Msa0648260 AT5G16350.2 27.949 390 238 9 9 368 7 383 3.92e-44 159
Msa0648260 AT1G72110.1 27.358 424 281 11 9 416 12 424 2.05e-41 153
Msa0648260 AT5G22490.2 30.052 386 226 15 10 368 12 380 3.29e-40 148
Msa0648260 AT2G38995.4 30.108 372 231 11 65 419 7 366 2.01e-39 145
Msa0648260 AT5G37300.1 29.298 413 260 13 9 404 17 414 4.54e-39 147
Msa0648260 AT5G37300.4 29.298 413 260 13 9 404 35 432 4.86e-39 147
Msa0648260 AT2G38995.3 30.027 373 232 11 65 420 7 367 7.32e-39 145
Msa0648260 AT3G49210.2 28.198 383 234 10 9 355 26 403 9.84e-39 145
Msa0648260 AT1G72110.2 26.526 426 273 12 9 416 12 415 1.03e-36 140
Msa0648260 AT5G37300.2 28.877 374 240 11 9 368 35 396 4.93e-33 129
Msa0648260 AT5G37300.3 30.970 268 170 9 9 270 35 293 6.45e-26 107

Find 104 sgRNAs with CRISPR-Local

Find 347 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAATTCCTTCTCTGATTT+TGG 0.058227 4_3:+54708706 Msa0648260:CDS
CTAACCCCTTAGAGTTTATT+TGG 0.122697 4_3:+54709924 Msa0648260:CDS
ATCTTTAATCATTGAGCTTT+TGG 0.190332 4_3:-54708740 None:intergenic
TGCTTTCCAAATAAACTCTA+AGG 0.205452 4_3:-54709930 None:intergenic
ATTAGTCTCTACTTTATAAT+AGG 0.215084 4_3:+54707945 Msa0648260:five_prime_UTR
CATTGAATGGCTCTTAGATA+TGG 0.311941 4_3:+54709997 Msa0648260:CDS
ATCAGAGAAGGAATTGAAAA+AGG 0.315071 4_3:-54708701 None:intergenic
TTGCTTAGTACTAGGAATAT+TGG 0.315217 4_3:+54709791 Msa0648260:CDS
TTAGTCTCTACTTTATAATA+GGG 0.325163 4_3:+54707946 Msa0648260:five_prime_UTR
TTCCACTGGCCCAATCAAAT+TGG 0.339045 4_3:-54710184 None:intergenic
ACAATAAATGATGTGATTAC+TGG 0.341873 4_3:+54709689 Msa0648260:CDS
TGGCAAAATGAAATGGAAAA+AGG 0.350565 4_3:+54708318 Msa0648260:CDS
CATGCAAGAAATGGACAAAA+AGG 0.359212 4_3:+54709739 Msa0648260:CDS
GGCTGATTCAAAATCTCCTT+GGG 0.370234 4_3:+54709844 Msa0648260:CDS
TTTCATCAAGAGAGAATGAT+AGG 0.372720 4_3:-54708825 None:intergenic
ACACTTATAAAGTACCATTA+TGG 0.373714 4_3:-54708169 None:intergenic
GCAGTTGCTAAACATATCTA+TGG 0.381434 4_3:+54710132 Msa0648260:CDS
TAGACAGGCCTTGCTTAACT+TGG 0.385229 4_3:-54709900 None:intergenic
GGAACGTGCATATGATCTTC+AGG 0.385331 4_3:-54708352 None:intergenic
GTTCCTTCAGCATTGCTTGT+TGG 0.387997 4_3:-54708499 None:intergenic
GTGCATATATAATACTATAA+TGG 0.393680 4_3:+54707975 Msa0648260:exon
TTGTCATTTCTTGAATTGAT+TGG 0.394866 4_3:-54709820 None:intergenic
ACCACAAGACAAACCCCTTT+GGG 0.407424 4_3:+54708456 Msa0648260:CDS
AAGATGACAAGACACCTATA+TGG 0.407784 4_3:+54708758 Msa0648260:CDS
GCCAGTGGAACCTATGGCTT+TGG 0.408139 4_3:+54710197 Msa0648260:CDS
ATACATGTAAGAAAGAAATA+TGG 0.415159 4_3:-54709871 None:intergenic
TATTGTCCACTTGGACTAAC+CGG 0.416633 4_3:-54708021 None:intergenic
ACAAAGATGGCAAAATGAAA+TGG 0.416873 4_3:+54708311 Msa0648260:CDS
TCCACGTTTCTCCTCCATAA+TGG 0.418365 4_3:+54708155 Msa0648260:CDS
AGGCTGATTCAAAATCTCCT+TGG 0.423311 4_3:+54709843 Msa0648260:CDS
CACCACAAGACAAACCCCTT+TGG 0.423718 4_3:+54708455 Msa0648260:CDS
GTTGTCATATCCAATTTGAT+TGG 0.424756 4_3:+54710174 Msa0648260:CDS
CTCTAAGGGGTTAGATAGAC+AGG 0.433414 4_3:-54709915 None:intergenic
GAGGAGAAACGTGGATTGAT+AGG 0.433511 4_3:-54708147 None:intergenic
TTGTCATATCCAATTTGATT+GGG 0.434336 4_3:+54710175 Msa0648260:CDS
TTGTTGGATATTTAATCAAA+TGG 0.434523 4_3:-54708483 None:intergenic
TCCCAAAGGGGTTTGTCTTG+TGG 0.436342 4_3:-54708457 None:intergenic
ATAGTTTGAGAATCATCAAT+TGG 0.437770 4_3:-54708099 None:intergenic
TAGGCTATACATGCAAGAAA+TGG 0.441669 4_3:+54709730 Msa0648260:CDS
CCTTCCTCACCATTCCATAT+AGG 0.442303 4_3:-54708772 None:intergenic
TGGTGATGGTTACTCTCTCA+TGG 0.446072 4_3:+54708549 Msa0648260:CDS
CAATAAATGATGTGATTACT+GGG 0.449069 4_3:+54709690 Msa0648260:CDS
AATCAAATGGATTTCCCAAA+GGG 0.450613 4_3:-54708470 None:intergenic
GATTGGTGTTGCTTAGTACT+AGG 0.452198 4_3:+54709783 Msa0648260:CDS
GGCTTGTACTTTACAATGAC+AGG 0.453421 4_3:+54710237 Msa0648260:CDS
TCCGAAAACATATGAACATA+GGG 0.457117 4_3:-54708058 None:intergenic
GATTGGGCCAGTGGAACCTA+TGG 0.464336 4_3:+54710191 Msa0648260:CDS
GATATGGAGCTGAAATTAAG+AGG 0.473758 4_3:+54710013 Msa0648260:CDS
ACACTTGTTATCTCCAAAGA+AGG 0.477485 4_3:+54708645 Msa0648260:CDS
AGACAGGCCTTGCTTAACTT+GGG 0.483628 4_3:-54709899 None:intergenic
AAAACAATCAAGTCTAAGCT+TGG 0.484750 4_3:+54708850 Msa0648260:CDS
GCTTTCCAAATAAACTCTAA+GGG 0.494104 4_3:-54709929 None:intergenic
GGAAAAGATAGAGGAAGAGA+AGG 0.494447 4_3:-54708607 None:intergenic
AACATCAAATTCCACAGGAT+TGG 0.500187 4_3:+54709766 Msa0648260:CDS
GCCAAAGCCATAGGTTCCAC+TGG 0.507030 4_3:-54710198 None:intergenic
ATCCAATTTGATTGGGCCAG+TGG 0.512219 4_3:+54710182 Msa0648260:CDS
GGATGGTTTGCCAAAGCCAT+AGG 0.516215 4_3:-54710207 None:intergenic
ATCCGAAAACATATGAACAT+AGG 0.525975 4_3:-54708059 None:intergenic
GTAAAGTACAAGCCTTTCAC+AGG 0.526010 4_3:-54710228 None:intergenic
TTGGCAAACCATCCTGTGAA+AGG 0.530246 4_3:+54710216 Msa0648260:CDS
TTGCGTGAAGGAAAAGATAG+AGG 0.531251 4_3:-54708616 None:intergenic
CTTCATCATGCACTTGGTGA+TGG 0.536861 4_3:+54708535 Msa0648260:CDS
AAAAGGAGAATATGGTTGAA+GGG 0.537806 4_3:-54708684 None:intergenic
GTTAAGATGATGGTTACCTC+AGG 0.538389 4_3:-54710264 None:intergenic
TTCAAACTTCATCATGCACT+TGG 0.538549 4_3:+54708529 Msa0648260:CDS
TTTGGAGATAACAAGTGTGA+TGG 0.547485 4_3:-54708640 None:intergenic
AGTACAAGCCTTTCACAGGA+TGG 0.556400 4_3:-54710224 None:intergenic
GGTGATGGTTACTCTCTCAT+GGG 0.557425 4_3:+54708550 Msa0648260:CDS
TAATCAAATGGATTTCCCAA+AGG 0.558077 4_3:-54708471 None:intergenic
TTATGTGTCAAAGATTATGA+TGG 0.567297 4_3:+54708426 Msa0648260:CDS
GACAGGCCTTGCTTAACTTG+GGG 0.567657 4_3:-54709898 None:intergenic
ACAAAGATTGAAACTTGTCT+CGG 0.568625 4_3:-54707910 None:intergenic
CAAAGATTGAAACTTGTCTC+GGG 0.571699 4_3:-54707909 None:intergenic
AAACTAGAGAGTTAAGATGA+TGG 0.578017 4_3:-54710274 None:intergenic
GTGTTGAAGTATTGTCCACT+TGG 0.580390 4_3:-54708030 None:intergenic
CACTTGTTATCTCCAAAGAA+GGG 0.584946 4_3:+54708646 Msa0648260:CDS
CTTTCCAAATAAACTCTAAG+GGG 0.586770 4_3:-54709928 None:intergenic
CCTATATGGAATGGTGAGGA+AGG 0.587168 4_3:+54708772 Msa0648260:CDS
GCAAGAACATCAAATTCCAC+AGG 0.588042 4_3:+54709761 Msa0648260:CDS
CTTTGAATATGTAACAGAGC+CGG 0.590117 4_3:+54708002 Msa0648260:CDS
TGATAGGTAAGAAGACATGT+TGG 0.596085 4_3:-54708131 None:intergenic
GCTCCATCCAAAATCAGAGA+AGG 0.601636 4_3:-54708713 None:intergenic
GACAAGACACCTATATGGAA+TGG 0.604148 4_3:+54708763 Msa0648260:CDS
TATCCAACAAGCAATGCTGA+AGG 0.616041 4_3:+54708496 Msa0648260:CDS
AAGTGTGATGGTTTGCGTGA+AGG 0.622326 4_3:-54708628 None:intergenic
ACAGAGCCGGTTAGTCCAAG+TGG 0.626388 4_3:+54708015 Msa0648260:CDS
ATCAATCCCCAAGTTAAGCA+AGG 0.627042 4_3:+54709892 Msa0648260:CDS
ATCAATTCAAGAAATGACAA+AGG 0.634277 4_3:+54709823 Msa0648260:CDS
GCTGAAATTAAGAGGACATG+AGG 0.640508 4_3:+54710021 Msa0648260:CDS
TACAATGACAGGTGGACCTG+AGG 0.642479 4_3:+54710248 Msa0648260:CDS
ATCAAATGGATTTCCCAAAG+GGG 0.644210 4_3:-54708469 None:intergenic
CTTATAAAGTACCATTATGG+AGG 0.648669 4_3:-54708166 None:intergenic
AATCAAGTCTAAGCTTGGAG+TGG 0.650359 4_3:+54708855 Msa0648260:CDS
CTGATTCAAAATCTCCTTGG+GGG 0.654193 4_3:+54709846 Msa0648260:CDS
ACCATTATGGAGGAGAAACG+TGG 0.657361 4_3:-54708156 None:intergenic
GCTGATTCAAAATCTCCTTG+GGG 0.657580 4_3:+54709845 Msa0648260:CDS
ATATAGGTGAGAGACAAAGA+TGG 0.658680 4_3:+54708298 Msa0648260:intron
GATAGGTTTGATAGTACACA+AGG 0.661721 4_3:-54708808 None:intergenic
ACTAAGCAACACCAATCCTG+TGG 0.666809 4_3:-54709777 None:intergenic
TTGTACTTTACAATGACAGG+TGG 0.673805 4_3:+54710240 Msa0648260:CDS
GACACCTATATGGAATGGTG+AGG 0.677689 4_3:+54708768 Msa0648260:CDS
CCGAAAACATATGAACATAG+GGG 0.692361 4_3:-54708057 None:intergenic
AAAACATATGAACATAGGGG+TGG 0.715907 4_3:-54708054 None:intergenic
AATAAATGATGTGATTACTG+GGG 0.718291 4_3:+54709691 Msa0648260:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTATTAATGAAACTTTTA+AGG - chr4_3:54708208-54708227 None:intergenic 10.0%
!!! ATTTATTAATGAAACTTTTA+AGG - chr4_3:54708208-54708227 None:intergenic 10.0%
!! TATATTCTACATGTTTATAT+AGG + chr4_3:54708282-54708301 Msa0648260:intron 15.0%
!! CAATTGAAAAATTGTAATTA+AGG - chr4_3:54709607-54709626 None:intergenic 15.0%
!! GAAAAATAAATAAAAGACTT+GGG - chr4_3:54710069-54710088 None:intergenic 15.0%
!! TGAAAAATAAATAAAAGACT+TGG - chr4_3:54710070-54710089 None:intergenic 15.0%
!! TATATTCTACATGTTTATAT+AGG + chr4_3:54708282-54708301 Msa0648260:intron 15.0%
!! CAATTGAAAAATTGTAATTA+AGG - chr4_3:54709607-54709626 None:intergenic 15.0%
!! GAAAAATAAATAAAAGACTT+GGG - chr4_3:54710069-54710088 None:intergenic 15.0%
!! TGAAAAATAAATAAAAGACT+TGG - chr4_3:54710070-54710089 None:intergenic 15.0%
!!! ATTAGTCTCTACTTTATAAT+AGG + chr4_3:54707945-54707964 Msa0648260:five_prime_UTR 20.0%
!! TTAGTCTCTACTTTATAATA+GGG + chr4_3:54707946-54707965 Msa0648260:five_prime_UTR 20.0%
!! GTGCATATATAATACTATAA+TGG + chr4_3:54707975-54707994 Msa0648260:exon 20.0%
!!! ATTCAATTGATTCACTTTTT+GGG - chr4_3:54708384-54708403 None:intergenic 20.0%
!!! AATTCAATTGATTCACTTTT+TGG - chr4_3:54708385-54708404 None:intergenic 20.0%
!! TTGTTGGATATTTAATCAAA+TGG - chr4_3:54708486-54708505 None:intergenic 20.0%
!! AAAAATTGTAATTAAGGTGT+AGG - chr4_3:54709601-54709620 None:intergenic 20.0%
!! ATACATGTAAGAAAGAAATA+TGG - chr4_3:54709874-54709893 None:intergenic 20.0%
!!! ATTAGTCTCTACTTTATAAT+AGG + chr4_3:54707945-54707964 Msa0648260:five_prime_UTR 20.0%
!! TTAGTCTCTACTTTATAATA+GGG + chr4_3:54707946-54707965 Msa0648260:five_prime_UTR 20.0%
!! GTGCATATATAATACTATAA+TGG + chr4_3:54707975-54707994 Msa0648260:exon 20.0%
!!! ATTCAATTGATTCACTTTTT+GGG - chr4_3:54708384-54708403 None:intergenic 20.0%
!!! AATTCAATTGATTCACTTTT+TGG - chr4_3:54708385-54708404 None:intergenic 20.0%
!! TTGTTGGATATTTAATCAAA+TGG - chr4_3:54708486-54708505 None:intergenic 20.0%
!! AAAAATTGTAATTAAGGTGT+AGG - chr4_3:54709601-54709620 None:intergenic 20.0%
!! ATACATGTAAGAAAGAAATA+TGG - chr4_3:54709874-54709893 None:intergenic 20.0%
!! TTCATATGTTTTCGGATTTT+TGG + chr4_3:54708065-54708084 Msa0648260:CDS 25.0%
! ATAGTTTGAGAATCATCAAT+TGG - chr4_3:54708102-54708121 None:intergenic 25.0%
!! ACACTTATAAAGTACCATTA+TGG - chr4_3:54708172-54708191 None:intergenic 25.0%
!!! TGTACTTTTTTTTGTTGTTG+AGG + chr4_3:54708235-54708254 Msa0648260:intron 25.0%
! TTATGTGTCAAAGATTATGA+TGG + chr4_3:54708426-54708445 Msa0648260:CDS 25.0%
!! ATCTTTAATCATTGAGCTTT+TGG - chr4_3:54708743-54708762 None:intergenic 25.0%
! TCTAGCATCTTATCTAATAT+AGG - chr4_3:54709130-54709149 None:intergenic 25.0%
! AAGCTATAAGAGAAACTATT+AGG + chr4_3:54709238-54709257 Msa0648260:intron 25.0%
!! TTTTGACCTTGAAATTCTTT+AGG - chr4_3:54709424-54709443 None:intergenic 25.0%
! ACAATAAATGATGTGATTAC+TGG + chr4_3:54709689-54709708 Msa0648260:CDS 25.0%
! CAATAAATGATGTGATTACT+GGG + chr4_3:54709690-54709709 Msa0648260:CDS 25.0%
! AATAAATGATGTGATTACTG+GGG + chr4_3:54709691-54709710 Msa0648260:CDS 25.0%
!! TTGTCATTTCTTGAATTGAT+TGG - chr4_3:54709823-54709842 None:intergenic 25.0%
! ATCAATTCAAGAAATGACAA+AGG + chr4_3:54709823-54709842 Msa0648260:CDS 25.0%
! AAGCACAAAAAATAATCAAG+AGG + chr4_3:54709948-54709967 Msa0648260:CDS 25.0%
! TTGTCATATCCAATTTGATT+GGG + chr4_3:54710175-54710194 Msa0648260:CDS 25.0%
!! TTCATATGTTTTCGGATTTT+TGG + chr4_3:54708065-54708084 Msa0648260:CDS 25.0%
! ATAGTTTGAGAATCATCAAT+TGG - chr4_3:54708102-54708121 None:intergenic 25.0%
!! ACACTTATAAAGTACCATTA+TGG - chr4_3:54708172-54708191 None:intergenic 25.0%
!!! TGTACTTTTTTTTGTTGTTG+AGG + chr4_3:54708235-54708254 Msa0648260:intron 25.0%
! TTATGTGTCAAAGATTATGA+TGG + chr4_3:54708426-54708445 Msa0648260:CDS 25.0%
!! ATCTTTAATCATTGAGCTTT+TGG - chr4_3:54708743-54708762 None:intergenic 25.0%
! TCTAGCATCTTATCTAATAT+AGG - chr4_3:54709130-54709149 None:intergenic 25.0%
! AAGCTATAAGAGAAACTATT+AGG + chr4_3:54709238-54709257 Msa0648260:intron 25.0%
!! TTTTGACCTTGAAATTCTTT+AGG - chr4_3:54709424-54709443 None:intergenic 25.0%
! ACAATAAATGATGTGATTAC+TGG + chr4_3:54709689-54709708 Msa0648260:CDS 25.0%
! CAATAAATGATGTGATTACT+GGG + chr4_3:54709690-54709709 Msa0648260:CDS 25.0%
! AATAAATGATGTGATTACTG+GGG + chr4_3:54709691-54709710 Msa0648260:CDS 25.0%
!! TTGTCATTTCTTGAATTGAT+TGG - chr4_3:54709823-54709842 None:intergenic 25.0%
! ATCAATTCAAGAAATGACAA+AGG + chr4_3:54709823-54709842 Msa0648260:CDS 25.0%
! AAGCACAAAAAATAATCAAG+AGG + chr4_3:54709948-54709967 Msa0648260:CDS 25.0%
! TTGTCATATCCAATTTGATT+GGG + chr4_3:54710175-54710194 Msa0648260:CDS 25.0%
TCCGAAAACATATGAACATA+GGG - chr4_3:54708061-54708080 None:intergenic 30.0%
ATCCGAAAACATATGAACAT+AGG - chr4_3:54708062-54708081 None:intergenic 30.0%
! CTTATAAAGTACCATTATGG+AGG - chr4_3:54708169-54708188 None:intergenic 30.0%
ACAAAGATGGCAAAATGAAA+TGG + chr4_3:54708311-54708330 Msa0648260:CDS 30.0%
TGGCAAAATGAAATGGAAAA+AGG + chr4_3:54708318-54708337 Msa0648260:CDS 30.0%
AATGAAATGGAAAAAGGTAG+AGG + chr4_3:54708324-54708343 Msa0648260:CDS 30.0%
!!! GATTCACTTTTTGGGAATAT+TGG - chr4_3:54708376-54708395 None:intergenic 30.0%
! AATCAAATGGATTTCCCAAA+GGG - chr4_3:54708473-54708492 None:intergenic 30.0%
! TAATCAAATGGATTTCCCAA+AGG - chr4_3:54708474-54708493 None:intergenic 30.0%
AAAAGGAGAATATGGTTGAA+GGG - chr4_3:54708687-54708706 None:intergenic 30.0%
AAAAAGGAGAATATGGTTGA+AGG - chr4_3:54708688-54708707 None:intergenic 30.0%
GGAATTGAAAAAGGAGAATA+TGG - chr4_3:54708695-54708714 None:intergenic 30.0%
ATCAGAGAAGGAATTGAAAA+AGG - chr4_3:54708704-54708723 None:intergenic 30.0%
! TTCAATTCCTTCTCTGATTT+TGG + chr4_3:54708706-54708725 Msa0648260:CDS 30.0%
TTTCATCAAGAGAGAATGAT+AGG - chr4_3:54708828-54708847 None:intergenic 30.0%
AAAACAATCAAGTCTAAGCT+TGG + chr4_3:54708850-54708869 Msa0648260:CDS 30.0%
TAGAAATGACAACATTAGAG+AGG + chr4_3:54709088-54709107 Msa0648260:intron 30.0%
AGAAATGACAACATTAGAGA+GGG + chr4_3:54709089-54709108 Msa0648260:intron 30.0%
GACTTGTGAATTCTATAGTT+AGG + chr4_3:54709185-54709204 Msa0648260:intron 30.0%
TTAGGAGAGTAAATCAGATA+GGG + chr4_3:54709203-54709222 Msa0648260:intron 30.0%
TAGGCTCAATCTATTAGAAT+AGG + chr4_3:54709379-54709398 Msa0648260:intron 30.0%
TTTCAGTTGTATCAACCATT+AGG - chr4_3:54709478-54709497 None:intergenic 30.0%
TTGCTTAGTACTAGGAATAT+TGG + chr4_3:54709791-54709810 Msa0648260:CDS 30.0%
CTTTCCAAATAAACTCTAAG+GGG - chr4_3:54709931-54709950 None:intergenic 30.0%
GCTTTCCAAATAAACTCTAA+GGG - chr4_3:54709932-54709951 None:intergenic 30.0%
TGCTTTCCAAATAAACTCTA+AGG - chr4_3:54709933-54709952 None:intergenic 30.0%
!! TCACTGTTTTTCTCATTGAA+TGG + chr4_3:54709984-54710003 Msa0648260:CDS 30.0%
GTTGTCATATCCAATTTGAT+TGG + chr4_3:54710174-54710193 Msa0648260:CDS 30.0%
TCCGAAAACATATGAACATA+GGG - chr4_3:54708061-54708080 None:intergenic 30.0%
ATCCGAAAACATATGAACAT+AGG - chr4_3:54708062-54708081 None:intergenic 30.0%
! CTTATAAAGTACCATTATGG+AGG - chr4_3:54708169-54708188 None:intergenic 30.0%
ACAAAGATGGCAAAATGAAA+TGG + chr4_3:54708311-54708330 Msa0648260:CDS 30.0%
TGGCAAAATGAAATGGAAAA+AGG + chr4_3:54708318-54708337 Msa0648260:CDS 30.0%
AATGAAATGGAAAAAGGTAG+AGG + chr4_3:54708324-54708343 Msa0648260:CDS 30.0%
!!! GATTCACTTTTTGGGAATAT+TGG - chr4_3:54708376-54708395 None:intergenic 30.0%
! AATCAAATGGATTTCCCAAA+GGG - chr4_3:54708473-54708492 None:intergenic 30.0%
! TAATCAAATGGATTTCCCAA+AGG - chr4_3:54708474-54708493 None:intergenic 30.0%
AAAAGGAGAATATGGTTGAA+GGG - chr4_3:54708687-54708706 None:intergenic 30.0%
AAAAAGGAGAATATGGTTGA+AGG - chr4_3:54708688-54708707 None:intergenic 30.0%
GGAATTGAAAAAGGAGAATA+TGG - chr4_3:54708695-54708714 None:intergenic 30.0%
ATCAGAGAAGGAATTGAAAA+AGG - chr4_3:54708704-54708723 None:intergenic 30.0%
! TTCAATTCCTTCTCTGATTT+TGG + chr4_3:54708706-54708725 Msa0648260:CDS 30.0%
TTTCATCAAGAGAGAATGAT+AGG - chr4_3:54708828-54708847 None:intergenic 30.0%
AAAACAATCAAGTCTAAGCT+TGG + chr4_3:54708850-54708869 Msa0648260:CDS 30.0%
TAGAAATGACAACATTAGAG+AGG + chr4_3:54709088-54709107 Msa0648260:intron 30.0%
AGAAATGACAACATTAGAGA+GGG + chr4_3:54709089-54709108 Msa0648260:intron 30.0%
GACTTGTGAATTCTATAGTT+AGG + chr4_3:54709185-54709204 Msa0648260:intron 30.0%
TTAGGAGAGTAAATCAGATA+GGG + chr4_3:54709203-54709222 Msa0648260:intron 30.0%
TAGGCTCAATCTATTAGAAT+AGG + chr4_3:54709379-54709398 Msa0648260:intron 30.0%
TTTCAGTTGTATCAACCATT+AGG - chr4_3:54709478-54709497 None:intergenic 30.0%
TTGCTTAGTACTAGGAATAT+TGG + chr4_3:54709791-54709810 Msa0648260:CDS 30.0%
CTTTCCAAATAAACTCTAAG+GGG - chr4_3:54709931-54709950 None:intergenic 30.0%
GCTTTCCAAATAAACTCTAA+GGG - chr4_3:54709932-54709951 None:intergenic 30.0%
TGCTTTCCAAATAAACTCTA+AGG - chr4_3:54709933-54709952 None:intergenic 30.0%
!! TCACTGTTTTTCTCATTGAA+TGG + chr4_3:54709984-54710003 Msa0648260:CDS 30.0%
GTTGTCATATCCAATTTGAT+TGG + chr4_3:54710174-54710193 Msa0648260:CDS 30.0%
CTTTGAATATGTAACAGAGC+CGG + chr4_3:54708002-54708021 Msa0648260:CDS 35.0%
AAAACATATGAACATAGGGG+TGG - chr4_3:54708057-54708076 None:intergenic 35.0%
CCGAAAACATATGAACATAG+GGG - chr4_3:54708060-54708079 None:intergenic 35.0%
! CCCCTATGTTCATATGTTTT+CGG + chr4_3:54708057-54708076 Msa0648260:CDS 35.0%
TGATAGGTAAGAAGACATGT+TGG - chr4_3:54708134-54708153 None:intergenic 35.0%
ATATAGGTGAGAGACAAAGA+TGG + chr4_3:54708298-54708317 Msa0648260:intron 35.0%
! ATCAAATGGATTTCCCAAAG+GGG - chr4_3:54708472-54708491 None:intergenic 35.0%
TTCAAACTTCATCATGCACT+TGG + chr4_3:54708529-54708548 Msa0648260:CDS 35.0%
TTTGGAGATAACAAGTGTGA+TGG - chr4_3:54708643-54708662 None:intergenic 35.0%
!! ACACTTGTTATCTCCAAAGA+AGG + chr4_3:54708645-54708664 Msa0648260:CDS 35.0%
!! CACTTGTTATCTCCAAAGAA+GGG + chr4_3:54708646-54708665 Msa0648260:CDS 35.0%
! ATTCCTTCTCTGATTTTGGA+TGG + chr4_3:54708710-54708729 Msa0648260:CDS 35.0%
AAGATGACAAGACACCTATA+TGG + chr4_3:54708758-54708777 Msa0648260:CDS 35.0%
! GATAGGTTTGATAGTACACA+AGG - chr4_3:54708811-54708830 None:intergenic 35.0%
TGTTGTACGAGACATAATGT+TGG + chr4_3:54708976-54708995 Msa0648260:intron 35.0%
AAGCAAGCGTAGCAAAAATA+AGG + chr4_3:54709024-54709043 Msa0648260:intron 35.0%
AGATGCTAGAAACTAGACTT+AGG + chr4_3:54709140-54709159 Msa0648260:intron 35.0%
! AAACTAGACTTAGGTGGTTT+TGG + chr4_3:54709149-54709168 Msa0648260:intron 35.0%
GTTAGGAGAGTAAATCAGAT+AGG + chr4_3:54709202-54709221 Msa0648260:intron 35.0%
TAGGAGAGTAAATCAGATAG+GGG + chr4_3:54709204-54709223 Msa0648260:intron 35.0%
!!! GGATAAGGTTGGTTGTTTTT+GGG + chr4_3:54709353-54709372 Msa0648260:intron 35.0%
TCGAAGCCTAAAGAATTTCA+AGG + chr4_3:54709415-54709434 Msa0648260:intron 35.0%
TCCAAGTTCATGCAATTTGT+TGG + chr4_3:54709570-54709589 Msa0648260:intron 35.0%
! CCAAGTTCATGCAATTTGTT+GGG + chr4_3:54709571-54709590 Msa0648260:intron 35.0%
!! CAAGTTCATGCAATTTGTTG+GGG + chr4_3:54709572-54709591 Msa0648260:intron 35.0%
!! ATTACTGGGGTCATTTTCTA+TGG + chr4_3:54709704-54709723 Msa0648260:CDS 35.0%
!! GGGTCATTTTCTATGGAATT+AGG + chr4_3:54709711-54709730 Msa0648260:CDS 35.0%
TAGGCTATACATGCAAGAAA+TGG + chr4_3:54709730-54709749 Msa0648260:CDS 35.0%
CATGCAAGAAATGGACAAAA+AGG + chr4_3:54709739-54709758 Msa0648260:CDS 35.0%
AACATCAAATTCCACAGGAT+TGG + chr4_3:54709766-54709785 Msa0648260:CDS 35.0%
CTAACCCCTTAGAGTTTATT+TGG + chr4_3:54709924-54709943 Msa0648260:CDS 35.0%
CATTGAATGGCTCTTAGATA+TGG + chr4_3:54709997-54710016 Msa0648260:CDS 35.0%
GATATGGAGCTGAAATTAAG+AGG + chr4_3:54710013-54710032 Msa0648260:CDS 35.0%
AAATTAAGAGGACATGAGGT+GGG + chr4_3:54710025-54710044 Msa0648260:intron 35.0%
TTGCTATAAACATGTGTTGC+AGG + chr4_3:54710110-54710129 Msa0648260:intron 35.0%
GCAGTTGCTAAACATATCTA+TGG + chr4_3:54710132-54710151 Msa0648260:CDS 35.0%
TTGTACTTTACAATGACAGG+TGG + chr4_3:54710240-54710259 Msa0648260:CDS 35.0%
AACCATCATCTTAACTCTCT+AGG + chr4_3:54710272-54710291 Msa0648260:CDS 35.0%
CTTTGAATATGTAACAGAGC+CGG + chr4_3:54708002-54708021 Msa0648260:CDS 35.0%
AAAACATATGAACATAGGGG+TGG - chr4_3:54708057-54708076 None:intergenic 35.0%
CCGAAAACATATGAACATAG+GGG - chr4_3:54708060-54708079 None:intergenic 35.0%
! CCCCTATGTTCATATGTTTT+CGG + chr4_3:54708057-54708076 Msa0648260:CDS 35.0%
TGATAGGTAAGAAGACATGT+TGG - chr4_3:54708134-54708153 None:intergenic 35.0%
ATATAGGTGAGAGACAAAGA+TGG + chr4_3:54708298-54708317 Msa0648260:intron 35.0%
! ATCAAATGGATTTCCCAAAG+GGG - chr4_3:54708472-54708491 None:intergenic 35.0%
TTCAAACTTCATCATGCACT+TGG + chr4_3:54708529-54708548 Msa0648260:CDS 35.0%
TTTGGAGATAACAAGTGTGA+TGG - chr4_3:54708643-54708662 None:intergenic 35.0%
!! ACACTTGTTATCTCCAAAGA+AGG + chr4_3:54708645-54708664 Msa0648260:CDS 35.0%
!! CACTTGTTATCTCCAAAGAA+GGG + chr4_3:54708646-54708665 Msa0648260:CDS 35.0%
! ATTCCTTCTCTGATTTTGGA+TGG + chr4_3:54708710-54708729 Msa0648260:CDS 35.0%
AAGATGACAAGACACCTATA+TGG + chr4_3:54708758-54708777 Msa0648260:CDS 35.0%
! GATAGGTTTGATAGTACACA+AGG - chr4_3:54708811-54708830 None:intergenic 35.0%
TGTTGTACGAGACATAATGT+TGG + chr4_3:54708976-54708995 Msa0648260:intron 35.0%
AAGCAAGCGTAGCAAAAATA+AGG + chr4_3:54709024-54709043 Msa0648260:intron 35.0%
AGATGCTAGAAACTAGACTT+AGG + chr4_3:54709140-54709159 Msa0648260:intron 35.0%
! AAACTAGACTTAGGTGGTTT+TGG + chr4_3:54709149-54709168 Msa0648260:intron 35.0%
GTTAGGAGAGTAAATCAGAT+AGG + chr4_3:54709202-54709221 Msa0648260:intron 35.0%
TAGGAGAGTAAATCAGATAG+GGG + chr4_3:54709204-54709223 Msa0648260:intron 35.0%
!!! GGATAAGGTTGGTTGTTTTT+GGG + chr4_3:54709353-54709372 Msa0648260:intron 35.0%
TCGAAGCCTAAAGAATTTCA+AGG + chr4_3:54709415-54709434 Msa0648260:intron 35.0%
TCCAAGTTCATGCAATTTGT+TGG + chr4_3:54709570-54709589 Msa0648260:intron 35.0%
! CCAAGTTCATGCAATTTGTT+GGG + chr4_3:54709571-54709590 Msa0648260:intron 35.0%
!! CAAGTTCATGCAATTTGTTG+GGG + chr4_3:54709572-54709591 Msa0648260:intron 35.0%
!! ATTACTGGGGTCATTTTCTA+TGG + chr4_3:54709704-54709723 Msa0648260:CDS 35.0%
!! GGGTCATTTTCTATGGAATT+AGG + chr4_3:54709711-54709730 Msa0648260:CDS 35.0%
TAGGCTATACATGCAAGAAA+TGG + chr4_3:54709730-54709749 Msa0648260:CDS 35.0%
CATGCAAGAAATGGACAAAA+AGG + chr4_3:54709739-54709758 Msa0648260:CDS 35.0%
AACATCAAATTCCACAGGAT+TGG + chr4_3:54709766-54709785 Msa0648260:CDS 35.0%
CTAACCCCTTAGAGTTTATT+TGG + chr4_3:54709924-54709943 Msa0648260:CDS 35.0%
CATTGAATGGCTCTTAGATA+TGG + chr4_3:54709997-54710016 Msa0648260:CDS 35.0%
GATATGGAGCTGAAATTAAG+AGG + chr4_3:54710013-54710032 Msa0648260:CDS 35.0%
AAATTAAGAGGACATGAGGT+GGG + chr4_3:54710025-54710044 Msa0648260:intron 35.0%
TTGCTATAAACATGTGTTGC+AGG + chr4_3:54710110-54710129 Msa0648260:intron 35.0%
GCAGTTGCTAAACATATCTA+TGG + chr4_3:54710132-54710151 Msa0648260:CDS 35.0%
TTGTACTTTACAATGACAGG+TGG + chr4_3:54710240-54710259 Msa0648260:CDS 35.0%
TATTGTCCACTTGGACTAAC+CGG - chr4_3:54708024-54708043 None:intergenic 40.0%
!! GTGTTGAAGTATTGTCCACT+TGG - chr4_3:54708033-54708052 None:intergenic 40.0%
TATCCAACAAGCAATGCTGA+AGG + chr4_3:54708496-54708515 Msa0648260:CDS 40.0%
GGAAAAGATAGAGGAAGAGA+AGG - chr4_3:54708610-54708629 None:intergenic 40.0%
TTGCGTGAAGGAAAAGATAG+AGG - chr4_3:54708619-54708638 None:intergenic 40.0%
CACTTGAAAAAGCCCTTCTT+TGG - chr4_3:54708661-54708680 None:intergenic 40.0%
!!! CAAAGAAGGGCTTTTTCAAG+TGG + chr4_3:54708659-54708678 Msa0648260:CDS 40.0%
GACAAGACACCTATATGGAA+TGG + chr4_3:54708763-54708782 Msa0648260:CDS 40.0%
AATCAAGTCTAAGCTTGGAG+TGG + chr4_3:54708855-54708874 Msa0648260:CDS 40.0%
GATCCTCTATCGATGTAGTA+TGG + chr4_3:54708915-54708934 Msa0648260:intron 40.0%
TCACCATACTACATCGATAG+AGG - chr4_3:54708921-54708940 None:intergenic 40.0%
GTACGAGACATAATGTTGGA+CGG + chr4_3:54708980-54708999 Msa0648260:intron 40.0%
CGCTTGCTTTATGTTTGTGT+TGG - chr4_3:54709013-54709032 None:intergenic 40.0%
AGGATGTTGTGTTGAATGTG+TGG + chr4_3:54709044-54709063 Msa0648260:intron 40.0%
AACATTAGAGAGGGAGAGTT+GGG + chr4_3:54709098-54709117 Msa0648260:intron 40.0%
TGCTAGAAACTAGACTTAGG+TGG + chr4_3:54709143-54709162 Msa0648260:intron 40.0%
!! GGGATAAGGTTGGTTGTTTT+TGG + chr4_3:54709352-54709371 Msa0648260:intron 40.0%
!!! GTTGGTTGTTTTTGGGAACT+AGG + chr4_3:54709360-54709379 Msa0648260:intron 40.0%
ATCAACCATTAGGCTTAGAG+AGG - chr4_3:54709468-54709487 None:intergenic 40.0%
GCTGCAAAATCATATTGCAG+CGG + chr4_3:54709540-54709559 Msa0648260:intron 40.0%
AAATCATATTGCAGCGGTAG+AGG + chr4_3:54709546-54709565 Msa0648260:intron 40.0%
CCCAACAAATTGCATGAACT+TGG - chr4_3:54709574-54709593 None:intergenic 40.0%
GCAAGAACATCAAATTCCAC+AGG + chr4_3:54709761-54709780 Msa0648260:CDS 40.0%
!! GATTGGTGTTGCTTAGTACT+AGG + chr4_3:54709783-54709802 Msa0648260:CDS 40.0%
! AGGCTGATTCAAAATCTCCT+TGG + chr4_3:54709843-54709862 Msa0648260:CDS 40.0%
! GGCTGATTCAAAATCTCCTT+GGG + chr4_3:54709844-54709863 Msa0648260:CDS 40.0%
! GCTGATTCAAAATCTCCTTG+GGG + chr4_3:54709845-54709864 Msa0648260:CDS 40.0%
CTGATTCAAAATCTCCTTGG+GGG + chr4_3:54709846-54709865 Msa0648260:CDS 40.0%
AAAGAAATATGGTTCCCCCA+AGG - chr4_3:54709863-54709882 None:intergenic 40.0%
ATCAATCCCCAAGTTAAGCA+AGG + chr4_3:54709892-54709911 Msa0648260:CDS 40.0%
GCTGAAATTAAGAGGACATG+AGG + chr4_3:54710021-54710040 Msa0648260:CDS 40.0%
GAAATTAAGAGGACATGAGG+TGG + chr4_3:54710024-54710043 Msa0648260:intron 40.0%
GTAAAGTACAAGCCTTTCAC+AGG - chr4_3:54710231-54710250 None:intergenic 40.0%
GGCTTGTACTTTACAATGAC+AGG + chr4_3:54710237-54710256 Msa0648260:CDS 40.0%
! GTTAAGATGATGGTTACCTC+AGG - chr4_3:54710267-54710286 None:intergenic 40.0%
TATTGTCCACTTGGACTAAC+CGG - chr4_3:54708024-54708043 None:intergenic 40.0%
!! GTGTTGAAGTATTGTCCACT+TGG - chr4_3:54708033-54708052 None:intergenic 40.0%
TATCCAACAAGCAATGCTGA+AGG + chr4_3:54708496-54708515 Msa0648260:CDS 40.0%
GGAAAAGATAGAGGAAGAGA+AGG - chr4_3:54708610-54708629 None:intergenic 40.0%
TTGCGTGAAGGAAAAGATAG+AGG - chr4_3:54708619-54708638 None:intergenic 40.0%
CACTTGAAAAAGCCCTTCTT+TGG - chr4_3:54708661-54708680 None:intergenic 40.0%
!!! CAAAGAAGGGCTTTTTCAAG+TGG + chr4_3:54708659-54708678 Msa0648260:CDS 40.0%
GACAAGACACCTATATGGAA+TGG + chr4_3:54708763-54708782 Msa0648260:CDS 40.0%
AATCAAGTCTAAGCTTGGAG+TGG + chr4_3:54708855-54708874 Msa0648260:CDS 40.0%
GATCCTCTATCGATGTAGTA+TGG + chr4_3:54708915-54708934 Msa0648260:intron 40.0%
TCACCATACTACATCGATAG+AGG - chr4_3:54708921-54708940 None:intergenic 40.0%
GTACGAGACATAATGTTGGA+CGG + chr4_3:54708980-54708999 Msa0648260:intron 40.0%
CGCTTGCTTTATGTTTGTGT+TGG - chr4_3:54709013-54709032 None:intergenic 40.0%
AGGATGTTGTGTTGAATGTG+TGG + chr4_3:54709044-54709063 Msa0648260:intron 40.0%
AACATTAGAGAGGGAGAGTT+GGG + chr4_3:54709098-54709117 Msa0648260:intron 40.0%
TGCTAGAAACTAGACTTAGG+TGG + chr4_3:54709143-54709162 Msa0648260:intron 40.0%
!! GGGATAAGGTTGGTTGTTTT+TGG + chr4_3:54709352-54709371 Msa0648260:intron 40.0%
!!! GTTGGTTGTTTTTGGGAACT+AGG + chr4_3:54709360-54709379 Msa0648260:intron 40.0%
ATCAACCATTAGGCTTAGAG+AGG - chr4_3:54709468-54709487 None:intergenic 40.0%
GCTGCAAAATCATATTGCAG+CGG + chr4_3:54709540-54709559 Msa0648260:intron 40.0%
AAATCATATTGCAGCGGTAG+AGG + chr4_3:54709546-54709565 Msa0648260:intron 40.0%
CCCAACAAATTGCATGAACT+TGG - chr4_3:54709574-54709593 None:intergenic 40.0%
GCAAGAACATCAAATTCCAC+AGG + chr4_3:54709761-54709780 Msa0648260:CDS 40.0%
!! GATTGGTGTTGCTTAGTACT+AGG + chr4_3:54709783-54709802 Msa0648260:CDS 40.0%
! AGGCTGATTCAAAATCTCCT+TGG + chr4_3:54709843-54709862 Msa0648260:CDS 40.0%
! GGCTGATTCAAAATCTCCTT+GGG + chr4_3:54709844-54709863 Msa0648260:CDS 40.0%
! GCTGATTCAAAATCTCCTTG+GGG + chr4_3:54709845-54709864 Msa0648260:CDS 40.0%
CTGATTCAAAATCTCCTTGG+GGG + chr4_3:54709846-54709865 Msa0648260:CDS 40.0%
AAAGAAATATGGTTCCCCCA+AGG - chr4_3:54709863-54709882 None:intergenic 40.0%
ATCAATCCCCAAGTTAAGCA+AGG + chr4_3:54709892-54709911 Msa0648260:CDS 40.0%
GCTGAAATTAAGAGGACATG+AGG + chr4_3:54710021-54710040 Msa0648260:CDS 40.0%
GAAATTAAGAGGACATGAGG+TGG + chr4_3:54710024-54710043 Msa0648260:intron 40.0%
GTAAAGTACAAGCCTTTCAC+AGG - chr4_3:54710231-54710250 None:intergenic 40.0%
GGCTTGTACTTTACAATGAC+AGG + chr4_3:54710237-54710256 Msa0648260:CDS 40.0%
! GTTAAGATGATGGTTACCTC+AGG - chr4_3:54710267-54710286 None:intergenic 40.0%
! GAGGAGAAACGTGGATTGAT+AGG - chr4_3:54708150-54708169 None:intergenic 45.0%
TCCACGTTTCTCCTCCATAA+TGG + chr4_3:54708155-54708174 Msa0648260:CDS 45.0%
ACCATTATGGAGGAGAAACG+TGG - chr4_3:54708159-54708178 None:intergenic 45.0%
GGAACGTGCATATGATCTTC+AGG - chr4_3:54708355-54708374 None:intergenic 45.0%
ACCACAAGACAAACCCCTTT+GGG + chr4_3:54708456-54708475 Msa0648260:CDS 45.0%
GTTCCTTCAGCATTGCTTGT+TGG - chr4_3:54708502-54708521 None:intergenic 45.0%
! CTTCATCATGCACTTGGTGA+TGG + chr4_3:54708535-54708554 Msa0648260:CDS 45.0%
!! TGGTGATGGTTACTCTCTCA+TGG + chr4_3:54708549-54708568 Msa0648260:CDS 45.0%
! GGTGATGGTTACTCTCTCAT+GGG + chr4_3:54708550-54708569 Msa0648260:CDS 45.0%
! AAGTGTGATGGTTTGCGTGA+AGG - chr4_3:54708631-54708650 None:intergenic 45.0%
GCTCCATCCAAAATCAGAGA+AGG - chr4_3:54708716-54708735 None:intergenic 45.0%
GACACCTATATGGAATGGTG+AGG + chr4_3:54708768-54708787 Msa0648260:CDS 45.0%
CCTTCCTCACCATTCCATAT+AGG - chr4_3:54708775-54708794 None:intergenic 45.0%
CCTATATGGAATGGTGAGGA+AGG + chr4_3:54708772-54708791 Msa0648260:CDS 45.0%
CAACATTAGAGAGGGAGAGT+TGG + chr4_3:54709097-54709116 Msa0648260:intron 45.0%
ACATTAGAGAGGGAGAGTTG+GGG + chr4_3:54709099-54709118 Msa0648260:intron 45.0%
ATGTAACCAACCCCACTTAG+TGG + chr4_3:54709331-54709350 Msa0648260:intron 45.0%
TGTAACCAACCCCACTTAGT+GGG + chr4_3:54709332-54709351 Msa0648260:intron 45.0%
CAACCTTATCCCACTAAGTG+GGG - chr4_3:54709344-54709363 None:intergenic 45.0%
CCAACCTTATCCCACTAAGT+GGG - chr4_3:54709345-54709364 None:intergenic 45.0%
ACCAACCTTATCCCACTAAG+TGG - chr4_3:54709346-54709365 None:intergenic 45.0%
ACTAAGCAACACCAATCCTG+TGG - chr4_3:54709780-54709799 None:intergenic 45.0%
AGACAGGCCTTGCTTAACTT+GGG - chr4_3:54709902-54709921 None:intergenic 45.0%
TAGACAGGCCTTGCTTAACT+TGG - chr4_3:54709903-54709922 None:intergenic 45.0%
! CTCTAAGGGGTTAGATAGAC+AGG - chr4_3:54709918-54709937 None:intergenic 45.0%
ATCCAATTTGATTGGGCCAG+TGG + chr4_3:54710182-54710201 Msa0648260:CDS 45.0%
TTCCACTGGCCCAATCAAAT+TGG - chr4_3:54710187-54710206 None:intergenic 45.0%
TTGGCAAACCATCCTGTGAA+AGG + chr4_3:54710216-54710235 Msa0648260:CDS 45.0%
AGTACAAGCCTTTCACAGGA+TGG - chr4_3:54710227-54710246 None:intergenic 45.0%
! GAGGAGAAACGTGGATTGAT+AGG - chr4_3:54708150-54708169 None:intergenic 45.0%
TCCACGTTTCTCCTCCATAA+TGG + chr4_3:54708155-54708174 Msa0648260:CDS 45.0%
ACCATTATGGAGGAGAAACG+TGG - chr4_3:54708159-54708178 None:intergenic 45.0%
GGAACGTGCATATGATCTTC+AGG - chr4_3:54708355-54708374 None:intergenic 45.0%
ACCACAAGACAAACCCCTTT+GGG + chr4_3:54708456-54708475 Msa0648260:CDS 45.0%
GTTCCTTCAGCATTGCTTGT+TGG - chr4_3:54708502-54708521 None:intergenic 45.0%
! CTTCATCATGCACTTGGTGA+TGG + chr4_3:54708535-54708554 Msa0648260:CDS 45.0%
!! TGGTGATGGTTACTCTCTCA+TGG + chr4_3:54708549-54708568 Msa0648260:CDS 45.0%
! GGTGATGGTTACTCTCTCAT+GGG + chr4_3:54708550-54708569 Msa0648260:CDS 45.0%
! AAGTGTGATGGTTTGCGTGA+AGG - chr4_3:54708631-54708650 None:intergenic 45.0%
GCTCCATCCAAAATCAGAGA+AGG - chr4_3:54708716-54708735 None:intergenic 45.0%
GACACCTATATGGAATGGTG+AGG + chr4_3:54708768-54708787 Msa0648260:CDS 45.0%
CCTTCCTCACCATTCCATAT+AGG - chr4_3:54708775-54708794 None:intergenic 45.0%
CCTATATGGAATGGTGAGGA+AGG + chr4_3:54708772-54708791 Msa0648260:CDS 45.0%
CAACATTAGAGAGGGAGAGT+TGG + chr4_3:54709097-54709116 Msa0648260:intron 45.0%
ACATTAGAGAGGGAGAGTTG+GGG + chr4_3:54709099-54709118 Msa0648260:intron 45.0%
ATGTAACCAACCCCACTTAG+TGG + chr4_3:54709331-54709350 Msa0648260:intron 45.0%
TGTAACCAACCCCACTTAGT+GGG + chr4_3:54709332-54709351 Msa0648260:intron 45.0%
CAACCTTATCCCACTAAGTG+GGG - chr4_3:54709344-54709363 None:intergenic 45.0%
CCAACCTTATCCCACTAAGT+GGG - chr4_3:54709345-54709364 None:intergenic 45.0%
ACCAACCTTATCCCACTAAG+TGG - chr4_3:54709346-54709365 None:intergenic 45.0%
ACTAAGCAACACCAATCCTG+TGG - chr4_3:54709780-54709799 None:intergenic 45.0%
AGACAGGCCTTGCTTAACTT+GGG - chr4_3:54709902-54709921 None:intergenic 45.0%
TAGACAGGCCTTGCTTAACT+TGG - chr4_3:54709903-54709922 None:intergenic 45.0%
! CTCTAAGGGGTTAGATAGAC+AGG - chr4_3:54709918-54709937 None:intergenic 45.0%
ATCCAATTTGATTGGGCCAG+TGG + chr4_3:54710182-54710201 Msa0648260:CDS 45.0%
TTCCACTGGCCCAATCAAAT+TGG - chr4_3:54710187-54710206 None:intergenic 45.0%
TTGGCAAACCATCCTGTGAA+AGG + chr4_3:54710216-54710235 Msa0648260:CDS 45.0%
AGTACAAGCCTTTCACAGGA+TGG - chr4_3:54710227-54710246 None:intergenic 45.0%
CACCACAAGACAAACCCCTT+TGG + chr4_3:54708455-54708474 Msa0648260:CDS 50.0%
TCCCAAAGGGGTTTGTCTTG+TGG - chr4_3:54708460-54708479 None:intergenic 50.0%
CTTATCCCACTAAGTGGGGT+TGG - chr4_3:54709340-54709359 None:intergenic 50.0%
CAACCCCACTTAGTGGGATA+AGG + chr4_3:54709338-54709357 Msa0648260:intron 50.0%
CCCACTTAGTGGGATAAGGT+TGG + chr4_3:54709342-54709361 Msa0648260:intron 50.0%
!!! AGAGAGGACTGGTTTTCGAG+CGG - chr4_3:54709452-54709471 None:intergenic 50.0%
CCATTAGGCTTAGAGAGGAC+TGG - chr4_3:54709463-54709482 None:intergenic 50.0%
CCAGTCCTCTCTAAGCCTAA+TGG + chr4_3:54709460-54709479 Msa0648260:intron 50.0%
! GACAGGCCTTGCTTAACTTG+GGG - chr4_3:54709901-54709920 None:intergenic 50.0%
! GGATGGTTTGCCAAAGCCAT+AGG - chr4_3:54710210-54710229 None:intergenic 50.0%
TACAATGACAGGTGGACCTG+AGG + chr4_3:54710248-54710267 Msa0648260:CDS 50.0%
CACCACAAGACAAACCCCTT+TGG + chr4_3:54708455-54708474 Msa0648260:CDS 50.0%
TCCCAAAGGGGTTTGTCTTG+TGG - chr4_3:54708460-54708479 None:intergenic 50.0%
CTTATCCCACTAAGTGGGGT+TGG - chr4_3:54709340-54709359 None:intergenic 50.0%
CAACCCCACTTAGTGGGATA+AGG + chr4_3:54709338-54709357 Msa0648260:intron 50.0%
CCCACTTAGTGGGATAAGGT+TGG + chr4_3:54709342-54709361 Msa0648260:intron 50.0%
!!! AGAGAGGACTGGTTTTCGAG+CGG - chr4_3:54709452-54709471 None:intergenic 50.0%
CCATTAGGCTTAGAGAGGAC+TGG - chr4_3:54709463-54709482 None:intergenic 50.0%
CCAGTCCTCTCTAAGCCTAA+TGG + chr4_3:54709460-54709479 Msa0648260:intron 50.0%
! GACAGGCCTTGCTTAACTTG+GGG - chr4_3:54709901-54709920 None:intergenic 50.0%
! GGATGGTTTGCCAAAGCCAT+AGG - chr4_3:54710210-54710229 None:intergenic 50.0%
TACAATGACAGGTGGACCTG+AGG + chr4_3:54710248-54710267 Msa0648260:CDS 50.0%
! ACAGAGCCGGTTAGTCCAAG+TGG + chr4_3:54708015-54708034 Msa0648260:CDS 55.0%
GATTGGGCCAGTGGAACCTA+TGG + chr4_3:54710191-54710210 Msa0648260:CDS 55.0%
GCCAGTGGAACCTATGGCTT+TGG + chr4_3:54710197-54710216 Msa0648260:CDS 55.0%
GCCAAAGCCATAGGTTCCAC+TGG - chr4_3:54710201-54710220 None:intergenic 55.0%
! ACAGAGCCGGTTAGTCCAAG+TGG + chr4_3:54708015-54708034 Msa0648260:CDS 55.0%
GATTGGGCCAGTGGAACCTA+TGG + chr4_3:54710191-54710210 Msa0648260:CDS 55.0%
GCCAGTGGAACCTATGGCTT+TGG + chr4_3:54710197-54710216 Msa0648260:CDS 55.0%
GCCAAAGCCATAGGTTCCAC+TGG - chr4_3:54710201-54710220 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 54707912 54710293 54707912 ID=Msa0648260;Name=Msa0648260
chr4_3 mRNA 54707912 54710293 54707912 ID=Msa0648260-mRNA-1;Parent=Msa0648260;Name=Msa0648260-mRNA-1;_AED=0.43;_eAED=0.43;_QI=82|1|0.75|1|1|1|4|0|423
chr4_3 exon 54707912 54708176 54707912 ID=Msa0648260-mRNA-1:exon:13881;Parent=Msa0648260-mRNA-1
chr4_3 exon 54708304 54708876 54708304 ID=Msa0648260-mRNA-1:exon:13882;Parent=Msa0648260-mRNA-1
chr4_3 exon 54709689 54710042 54709689 ID=Msa0648260-mRNA-1:exon:13883;Parent=Msa0648260-mRNA-1
chr4_3 exon 54710132 54710293 54710132 ID=Msa0648260-mRNA-1:exon:13884;Parent=Msa0648260-mRNA-1
chr4_3 five_prime_UTR 54707912 54707993 54707912 ID=Msa0648260-mRNA-1:five_prime_utr;Parent=Msa0648260-mRNA-1
chr4_3 CDS 54707994 54708176 54707994 ID=Msa0648260-mRNA-1:cds;Parent=Msa0648260-mRNA-1
chr4_3 CDS 54708304 54708876 54708304 ID=Msa0648260-mRNA-1:cds;Parent=Msa0648260-mRNA-1
chr4_3 CDS 54709689 54710042 54709689 ID=Msa0648260-mRNA-1:cds;Parent=Msa0648260-mRNA-1
chr4_3 CDS 54710132 54710293 54710132 ID=Msa0648260-mRNA-1:cds;Parent=Msa0648260-mRNA-1
Gene Sequence

>Msa0648260

ATGGACAACTTTGAATATGTAACAGAGCCGGTTAGTCCAAGTGGACAATACTTCAACACACCACCCCTATGTTCATATGTTTTCGGATTTTTGGAATCACAAATTCCAATTGATGATTCTCAAACTATGTATTTGTTCCAACATGTCTTCTTACCTATCAATCCACGTTTCTCCTCCATAATGGTGAGAGACAAAGATGGCAAAATGAAATGGAAAAAGGTAGAGGTGAAGCCTGAAGATCATATGCACGTTCCAATATTCCCAAAAAGTGAATCAATTGAATTGTATGATCAATATTTTGATGATTATGTGTCAAAGATTATGATGGAAAGAACACCACAAGACAAACCCCTTTGGGAAATCCATTTGATTAAATATCCAACAAGCAATGCTGAAGGAACTTTGATATTCAAACTTCATCATGCACTTGGTGATGGTTACTCTCTCATGGGTGCTCTTCTATCTTGTCTACAAAGAGCTGATGATCCTTCTCTTCCTCTATCTTTTCCTTCACGCAAACCATCACACTTGTTATCTCCAAAGAAGGGCTTTTTCAAGTGGTTCCCTTCAACCATATTCTCCTTTTTCAATTCCTTCTCTGATTTTGGATGGAGCATAGCCAAAAGCTCAATGATTAAAGATGACAAGACACCTATATGGAATGGTGAGGAAGGAGTTGAGTCTCAGCCTTGTGTACTATCAAACCTATCATTCTCTCTTGATGAAATCAAAACAATCAAGTCTAAGCTTGGAGTGACAATAAATGATGTGATTACTGGGGTCATTTTCTATGGAATTAGGCTATACATGCAAGAAATGGACAAAAAGGCAAGAACATCAAATTCCACAGGATTGGTGTTGCTTAGTACTAGGAATATTGGAAGTTACCAATCAATTCAAGAAATGACAAAGGCTGATTCAAAATCTCCTTGGGGGAACCATATTTCTTTCTTACATGTATCAATCCCCAAGTTAAGCAAGGCCTGTCTATCTAACCCCTTAGAGTTTATTTGGAAAGCACAAAAAATAATCAAGAGGAAGAGAAATACTTTCACTGTTTTTCTCATTGAATGGCTCTTAGATATGGAGCTGAAATTAAGAGGACATGAGGCAGTTGCTAAACATATCTATGGAACATTGAGAAATTCAAGTGTTGTCATATCCAATTTGATTGGGCCAGTGGAACCTATGGCTTTGGCAAACCATCCTGTGAAAGGCTTGTACTTTACAATGACAGGTGGACCTGAGGTAACCATCATCTTAACTCTCTAG

Protein sequence

>Msa0648260

MDNFEYVTEPVSPSGQYFNTPPLCSYVFGFLESQIPIDDSQTMYLFQHVFLPINPRFSSIMVRDKDGKMKWKKVEVKPEDHMHVPIFPKSESIELYDQYFDDYVSKIMMERTPQDKPLWEIHLIKYPTSNAEGTLIFKLHHALGDGYSLMGALLSCLQRADDPSLPLSFPSRKPSHLLSPKKGFFKWFPSTIFSFFNSFSDFGWSIAKSSMIKDDKTPIWNGEEGVESQPCVLSNLSFSLDEIKTIKSKLGVTINDVITGVIFYGIRLYMQEMDKKARTSNSTGLVLLSTRNIGSYQSIQEMTKADSKSPWGNHISFLHVSIPKLSKACLSNPLEFIWKAQKIIKRKRNTFTVFLIEWLLDMELKLRGHEAVAKHIYGTLRNSSVVISNLIGPVEPMALANHPVKGLYFTMTGGPEVTIILTL*