AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0109270

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0109270 MtrunA17_Chr1g0166281 100.000 150 0 0 1 150 1 150 4.78e-105 296
Msa0109270 MtrunA17_Chr1g0188171 86.577 149 20 0 1 149 1 149 1.25e-91 262
Msa0109270 MtrunA17_Chr3g0093271 78.912 147 31 0 1 147 52 198 8.03e-84 244
Msa0109270 MtrunA17_Chr3g0093271 47.692 65 34 0 12 76 136 200 1.02e-11 60.1
Msa0109270 MtrunA17_Chr6g0460211 78.378 148 32 0 1 148 1 148 2.68e-83 241
Msa0109270 MtrunA17_Chr6g0460211 47.692 65 34 0 12 76 85 149 4.14e-12 60.1
Msa0109270 MtrunA17_Chr5g0440931 77.703 148 33 0 1 148 1 148 1.42e-82 239
Msa0109270 MtrunA17_Chr5g0440931 47.692 65 34 0 12 76 85 149 4.19e-12 60.1
Msa0109270 MtrunA17_Chr7g0254731 77.027 148 34 0 1 148 1 148 1.26e-81 237
Msa0109270 MtrunA17_Chr7g0254731 47.692 65 34 0 12 76 85 149 3.29e-12 60.5
Msa0109270 MtrunA17_Chr7g0274101 67.114 149 49 0 1 149 1 149 6.31e-61 184
Msa0109270 MtrunA17_Chr1g0185001 61.905 147 55 1 1 147 1 146 2.20e-60 183
Msa0109270 MtrunA17_Chr5g0398751 42.568 148 83 1 1 148 1 146 3.52e-40 132
Msa0109270 MtrunA17_Chr8g0366401 43.537 147 80 1 5 148 10 156 4.02e-40 132
Msa0109270 MtrunA17_Chr3g0100541 48.667 150 62 1 1 150 41 175 1.35e-38 129
Msa0109270 MtrunA17_Chr7g0245231 45.205 146 80 0 5 150 23 168 9.43e-38 126
Msa0109270 MtrunA17_Chr1g0161211 49.265 136 69 0 12 147 46 181 3.47e-36 123
Msa0109270 MtrunA17_Chr1g0161211 42.857 77 44 0 69 145 30 106 6.67e-15 68.6
Msa0109270 MtrunA17_Chr4g0062221 42.553 141 79 1 8 146 7 147 1.59e-34 118
Msa0109270 MtrunA17_Chr4g0062221 43.421 76 39 2 2 76 78 150 2.48e-12 61.2
Msa0109270 MtrunA17_Chr6g0450921 45.185 135 74 0 12 146 29 163 1.78e-34 118
Msa0109270 MtrunA17_Chr6g0450921 44.444 63 35 0 84 146 28 90 4.16e-11 57.8
Msa0109270 MtrunA17_Chr8g0392951 46.667 135 71 1 12 146 24 157 1.16e-32 113
Msa0109270 MtrunA17_Chr8g0368681 41.216 148 85 1 1 146 1 148 3.79e-32 112
Msa0109270 MtrunA17_Chr8g0368681 38.356 73 42 1 4 76 82 151 6.90e-11 57.0
Msa0109270 MtrunA17_Chr8g0391691 47.328 131 69 0 12 142 36 166 5.99e-32 112
Msa0109270 MtrunA17_Chr8g0391691 51.515 66 31 1 5 69 101 166 1.01e-13 65.1
Msa0109270 MtrunA17_Chr3g0100511 43.448 145 67 1 1 145 41 170 1.84e-31 110
Msa0109270 MtrunA17_Chr5g0434951 42.222 135 77 1 12 146 4 137 2.46e-30 107
Msa0109270 MtrunA17_Chr4g0033601 42.553 141 79 1 12 150 5 145 9.38e-30 105
Msa0109270 MtrunA17_Chr3g0100561 42.069 145 69 1 1 145 41 170 6.90e-29 104
Msa0109270 MtrunA17_Chr6g0482731 45.255 137 71 3 12 146 26 160 7.14e-29 104
Msa0109270 MtrunA17_Chr6g0482731 38.667 75 46 0 13 87 100 174 9.06e-11 57.0
Msa0109270 MtrunA17_Chr1g0169581 40.876 137 79 1 12 146 4 140 1.64e-28 102
Msa0109270 MtrunA17_Chr3g0111371 44.444 135 71 2 12 146 5 135 2.16e-27 99.4
Msa0109270 MtrunA17_Chr5g0397101 37.838 148 86 3 1 146 360 503 2.67e-26 103
Msa0109270 MtrunA17_Chr7g0256701 41.844 141 77 3 11 146 72 212 4.83e-26 98.2
Msa0109270 MtrunA17_Chr4g0074811 37.584 149 89 3 1 148 385 530 7.05e-26 102
Msa0109270 MtrunA17_Chr5g0444171 38.255 149 88 3 1 148 386 531 1.80e-25 100
Msa0109270 MtrunA17_Chr4g0059951 39.333 150 86 4 1 148 367 513 3.32e-25 100
Msa0109270 MtrunA17_Chr8g0387671 37.162 148 87 3 1 146 360 503 2.40e-24 97.4
Msa0109270 MtrunA17_Chr7g0256171 45.255 137 73 1 12 146 5 141 3.50e-24 91.7
Msa0109270 MtrunA17_Chr8g0351681 41.497 147 77 4 12 150 49 194 4.42e-24 92.4
Msa0109270 MtrunA17_Chr7g0242561 36.486 148 93 1 1 148 350 496 4.80e-24 96.7
Msa0109270 MtrunA17_Chr1g0200601 40.541 148 81 3 1 146 324 466 6.28e-24 96.3
Msa0109270 MtrunA17_Chr3g0098951 37.013 154 90 3 1 148 377 529 6.62e-24 96.3
Msa0109270 MtrunA17_Chr4g0064231 40.127 157 76 3 12 150 64 220 8.27e-24 92.4
Msa0109270 MtrunA17_Chr1g0176751 35.616 146 91 2 1 146 418 560 1.16e-23 95.9
Msa0109270 MtrunA17_Chr8g0385341 36.986 146 89 2 1 146 324 466 3.29e-23 94.4
Msa0109270 MtrunA17_Chr3g0100471 56.338 71 31 0 5 75 45 115 3.43e-23 87.8
Msa0109270 MtrunA17_Chr1g0157131 35.135 148 90 3 1 146 368 511 4.94e-23 94.0
Msa0109270 MtrunA17_Chr7g0267751 37.671 146 88 2 1 146 429 571 5.63e-23 94.0
Msa0109270 MtrunA17_Chr7g0245911 38.356 146 81 3 12 148 47 192 6.96e-23 89.4
Msa0109270 MtrunA17_Chr3g0131181 36.301 146 90 2 1 146 323 465 7.68e-23 93.2
Msa0109270 MtrunA17_Chr1g0169621 34.756 164 80 3 12 148 4 167 1.65e-22 87.8
Msa0109270 MtrunA17_Chr7g0225921 33.333 141 92 2 8 147 2 141 9.34e-22 85.1
Msa0109270 MtrunA17_Chr0c02g0489761 35.135 148 90 3 1 146 372 515 1.40e-21 89.7
Msa0109270 MtrunA17_Chr5g0441691 34.459 148 91 3 1 146 362 505 3.15e-21 88.6
Msa0109270 MtrunA17_Chr3g0116141 35.433 127 81 1 20 146 13 138 4.82e-21 83.2
Msa0109270 MtrunA17_Chr3g0116151 35.433 127 81 1 20 146 14 139 4.94e-21 83.2
Msa0109270 MtrunA17_Chr5g0402331 35.762 151 89 3 2 148 38 184 1.01e-20 83.6
Msa0109270 MtrunA17_Chr7g0245371 37.333 150 82 2 11 148 23 172 1.65e-20 82.8
Msa0109270 MtrunA17_Chr5g0448721 34.247 146 93 2 1 146 390 532 2.35e-20 86.3
Msa0109270 MtrunA17_Chr4g0033371 37.086 151 91 3 1 150 366 513 2.39e-20 86.3
Msa0109270 MtrunA17_Chr1g0170281 34.247 146 93 2 1 146 412 554 3.33e-20 85.9
Msa0109270 MtrunA17_Chr4g0044961 36.296 135 84 1 12 146 57 189 3.96e-20 82.0
Msa0109270 MtrunA17_Chr4g0057641 35.294 136 87 1 11 146 5 139 4.53e-20 80.5
Msa0109270 MtrunA17_Chr5g0402361 37.143 140 81 2 12 148 48 183 4.54e-20 84.7
Msa0109270 MtrunA17_Chr5g0402361 35.762 151 89 3 2 148 210 356 1.22e-19 83.6
Msa0109270 MtrunA17_Chr5g0402361 30.061 163 86 3 12 146 120 282 5.82e-14 67.8
Msa0109270 MtrunA17_Chr4g0057651 34.559 136 88 1 11 146 5 139 1.04e-19 79.7
Msa0109270 MtrunA17_Chr6g0459231 32.143 140 94 1 8 147 4 142 1.92e-19 79.0
Msa0109270 MtrunA17_Chr8g0373691 35.915 142 88 3 6 146 48 187 2.64e-19 79.7
Msa0109270 MtrunA17_Chr8g0373691 42.254 71 38 1 79 146 44 114 6.77e-11 57.8
Msa0109270 MtrunA17_Chr2g0329371 38.129 139 82 2 12 146 64 202 4.25e-19 79.7
Msa0109270 MtrunA17_Chr5g0409441 31.852 135 92 0 8 142 18 152 5.20e-19 78.6
Msa0109270 MtrunA17_Chr3g0100461 61.111 54 21 0 93 146 53 106 5.46e-19 77.0
Msa0109270 MtrunA17_Chr3g0100461 50.000 56 28 0 20 75 53 108 1.14e-11 58.2
Msa0109270 MtrunA17_Chr4g0057661 33.824 136 89 1 11 146 5 139 3.11e-18 75.9
Msa0109270 MtrunA17_Chr4g0074791 32.653 147 84 5 1 146 390 522 8.66e-18 79.0
Msa0109270 MtrunA17_Chr7g0257751 30.822 146 100 1 1 146 352 496 1.29e-17 78.6
Msa0109270 MtrunA17_Chr3g0100501 51.613 62 30 0 83 144 70 131 1.67e-17 73.9
Msa0109270 MtrunA17_Chr5g0405421 29.870 154 96 5 1 148 395 542 2.88e-17 77.4
Msa0109270 MtrunA17_Chr1g0173541 28.767 146 103 1 1 146 346 490 2.14e-16 75.1
Msa0109270 MtrunA17_Chr1g0176421 33.094 139 90 2 1 139 455 590 1.91e-15 72.4
Msa0109270 MtrunA17_Chr3g0121191 33.088 136 81 1 12 147 93 218 7.08e-15 68.9
Msa0109270 MtrunA17_Chr3g0121191 41.176 68 40 0 6 73 150 217 8.22e-11 58.2
Msa0109270 MtrunA17_Chr5g0396261 34.513 113 70 3 36 145 1 112 2.03e-14 65.5
Msa0109270 MtrunA17_Chr3g0125311 32.394 142 78 5 21 147 22 160 1.67e-12 61.6
Msa0109270 MtrunA17_Chr7g0252401 25.532 141 99 1 7 147 30 164 3.94e-12 62.8
Msa0109270 MtrunA17_Chr4g0068501 27.273 143 94 3 11 146 15 154 1.29e-11 59.3
Msa0109270 MtrunA17_Chr2g0333301 26.797 153 98 5 3 150 22 165 1.70e-11 58.9
Msa0109270 MtrunA17_Chr1g0160151 31.429 140 76 4 20 147 30 161 2.90e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0109270 AT3G22930.1 84.247 146 23 0 5 150 28 173 7.45e-88 254
Msa0109270 AT4G14640.1 83.448 145 24 0 5 149 6 150 1.24e-86 250
Msa0109270 AT2G27030.3 79.054 148 31 0 1 148 1 148 1.11e-83 244
Msa0109270 AT2G27030.3 46.269 67 36 0 12 78 85 151 5.36e-12 60.8
Msa0109270 AT3G56800.1 79.054 148 31 0 1 148 1 148 2.52e-83 241
Msa0109270 AT3G56800.1 47.692 65 34 0 12 76 85 149 6.91e-12 60.1
Msa0109270 AT2G41110.1 79.054 148 31 0 1 148 1 148 2.52e-83 241
Msa0109270 AT2G41110.1 47.692 65 34 0 12 76 85 149 6.91e-12 60.1
Msa0109270 AT2G27030.1 79.054 148 31 0 1 148 1 148 2.52e-83 241
Msa0109270 AT2G27030.1 47.692 65 34 0 12 76 85 149 6.91e-12 60.1
Msa0109270 AT3G43810.1 78.378 148 32 0 1 148 1 148 3.70e-83 241
Msa0109270 AT3G43810.1 47.692 65 34 0 12 76 85 149 5.72e-12 60.1
Msa0109270 AT3G43810.2 78.378 148 32 0 1 148 1 148 9.33e-83 243
Msa0109270 AT5G21274.1 77.703 148 33 0 1 148 1 148 1.35e-82 239
Msa0109270 AT5G21274.1 46.154 65 35 0 12 76 85 149 1.69e-11 58.9
Msa0109270 AT1G66410.1 77.703 148 33 0 1 148 1 148 4.61e-82 238
Msa0109270 AT1G66410.1 47.692 65 34 0 12 76 85 149 2.15e-12 61.2
Msa0109270 AT5G37780.1 77.703 148 33 0 1 148 1 148 4.61e-82 238
Msa0109270 AT5G37780.1 47.692 65 34 0 12 76 85 149 2.15e-12 61.2
Msa0109270 AT2G41110.2 73.125 160 31 1 1 148 1 160 9.26e-80 233
Msa0109270 AT2G41110.2 47.692 65 34 0 12 76 97 161 9.19e-12 59.7
Msa0109270 AT5G37780.2 70.552 163 33 1 1 148 1 163 1.55e-77 228
Msa0109270 AT5G37780.2 47.692 65 34 0 12 76 100 164 4.28e-12 60.8
Msa0109270 AT5G37780.3 66.092 174 33 1 1 148 1 174 6.24e-76 224
Msa0109270 AT5G37780.3 47.692 65 34 0 12 76 111 175 4.91e-12 60.8
Msa0109270 AT1G66410.2 72.785 158 33 1 1 148 1 158 1.73e-73 217
Msa0109270 AT1G66410.2 47.692 65 34 0 12 76 95 159 4.35e-12 60.8
Msa0109270 AT4G14640.2 83.871 124 20 0 26 149 9 132 1.85e-73 216
Msa0109270 AT4G14640.2 45.161 62 34 0 12 73 68 129 2.32e-11 58.2
Msa0109270 AT5G37780.4 79.675 123 25 0 26 148 13 135 1.58e-69 206
Msa0109270 AT5G37780.4 47.692 65 34 0 12 76 72 136 3.05e-12 60.5
Msa0109270 AT3G43810.4 80.357 112 22 0 37 148 1 112 1.79e-63 190
Msa0109270 AT3G43810.4 47.692 65 34 0 12 76 49 113 1.73e-12 60.5
Msa0109270 AT3G43810.3 80.357 112 22 0 37 148 1 112 1.79e-63 190
Msa0109270 AT3G43810.3 47.692 65 34 0 12 76 49 113 1.73e-12 60.5
Msa0109270 AT1G66410.4 80.357 112 22 0 37 148 1 112 3.95e-63 189
Msa0109270 AT1G66410.4 47.692 65 34 0 12 76 49 113 6.49e-13 61.6
Msa0109270 AT1G66410.3 80.357 112 22 0 37 148 1 112 3.95e-63 189
Msa0109270 AT1G66410.3 47.692 65 34 0 12 76 49 113 6.49e-13 61.6
Msa0109270 AT4G14640.3 81.553 103 19 0 5 107 6 108 1.16e-58 178
Msa0109270 AT3G22930.2 79.808 104 21 0 5 108 28 131 2.56e-57 175
Msa0109270 AT2G41090.1 53.061 147 66 1 1 147 1 144 2.77e-48 154
Msa0109270 AT2G41100.7 50.920 163 63 2 1 146 55 217 3.99e-44 147
Msa0109270 AT2G41100.7 40.945 127 59 2 36 146 1 127 2.29e-25 98.2
Msa0109270 AT2G41100.7 52.688 93 41 1 5 97 149 238 2.87e-24 95.5
Msa0109270 AT2G41100.6 50.920 163 63 2 1 146 55 217 3.99e-44 147
Msa0109270 AT2G41100.6 40.945 127 59 2 36 146 1 127 2.29e-25 98.2
Msa0109270 AT2G41100.6 52.688 93 41 1 5 97 149 238 2.87e-24 95.5
Msa0109270 AT2G41100.3 50.920 163 63 2 1 146 55 217 3.99e-44 147
Msa0109270 AT2G41100.3 40.945 127 59 2 36 146 1 127 2.29e-25 98.2
Msa0109270 AT2G41100.3 52.688 93 41 1 5 97 149 238 2.87e-24 95.5
Msa0109270 AT3G51920.1 48.649 148 76 0 1 148 1 148 7.72e-44 142
Msa0109270 AT2G41100.4 50.920 163 63 2 1 146 90 252 8.87e-44 147
Msa0109270 AT2G41100.4 45.062 162 73 2 1 146 1 162 4.21e-41 140
Msa0109270 AT2G41100.4 52.688 93 41 1 5 97 184 273 5.04e-24 95.5
Msa0109270 AT2G41100.1 50.920 163 63 2 1 146 90 252 8.87e-44 147
Msa0109270 AT2G41100.1 45.062 162 73 2 1 146 1 162 4.21e-41 140
Msa0109270 AT2G41100.1 52.688 93 41 1 5 97 184 273 5.04e-24 95.5
Msa0109270 AT1G62820.1 42.361 144 81 1 5 148 6 147 6.42e-39 129
Msa0109270 AT1G12310.1 41.667 144 82 1 5 148 6 147 3.15e-38 127
Msa0109270 AT3G50360.1 47.407 135 71 0 12 146 27 161 1.24e-37 126
Msa0109270 AT3G50360.1 44.776 67 37 0 80 146 22 88 3.60e-12 61.2
Msa0109270 AT1G32250.1 41.892 148 80 2 5 146 9 156 1.95e-36 123
Msa0109270 AT1G66400.1 48.227 141 71 1 12 150 15 155 7.61e-36 121
Msa0109270 AT1G66400.1 41.176 68 40 0 6 73 84 151 2.82e-11 58.5
Msa0109270 AT1G18530.1 42.254 142 80 1 7 146 2 143 6.56e-34 117
Msa0109270 AT1G18530.1 43.836 73 38 1 4 76 77 146 1.05e-12 62.4
Msa0109270 AT5G37770.1 46.853 143 72 1 12 150 17 159 6.81e-34 117
Msa0109270 AT5G37770.2 46.853 143 72 1 12 150 17 159 6.81e-34 117
Msa0109270 AT4G37010.1 44.444 135 75 0 12 146 27 161 2.36e-33 115
Msa0109270 AT4G37010.2 44.444 135 75 0 12 146 31 165 2.39e-33 115
Msa0109270 AT1G24620.1 45.775 142 76 1 9 150 34 174 1.03e-32 114
Msa0109270 AT3G03000.1 43.448 145 81 1 5 148 13 157 1.12e-32 114
Msa0109270 AT3G25600.1 39.189 148 88 1 1 146 1 148 1.68e-30 108
Msa0109270 AT3G25600.1 41.096 73 40 1 4 76 82 151 3.43e-12 60.8
Msa0109270 AT1G18210.2 42.963 135 73 1 12 146 23 153 2.30e-29 105
Msa0109270 AT1G18210.1 42.963 135 73 1 12 146 23 153 2.30e-29 105
Msa0109270 AT2G41100.2 48.800 125 47 2 39 146 3 127 7.27e-29 105
Msa0109270 AT2G41100.2 52.688 93 41 1 5 97 59 148 3.65e-25 95.9
Msa0109270 AT1G73630.1 41.304 138 77 1 11 148 19 152 1.73e-28 103
Msa0109270 AT1G05990.1 43.165 139 76 2 11 146 4 142 1.28e-27 100
Msa0109270 AT2G43290.1 41.549 142 76 2 12 146 65 206 1.65e-27 102
Msa0109270 AT1G76040.1 38.356 146 88 2 1 146 167 310 4.55e-27 103
Msa0109270 AT1G76040.4 38.356 146 88 2 1 146 167 310 4.55e-27 103
Msa0109270 AT2G41100.5 52.577 97 43 1 1 97 1 94 4.78e-27 99.0
Msa0109270 AT2G41100.5 47.297 74 38 1 73 146 1 73 3.23e-15 68.6
Msa0109270 AT3G10190.1 40.541 148 85 3 1 146 59 205 7.74e-27 100
Msa0109270 AT2G15680.1 36.806 144 89 1 5 148 43 184 1.81e-26 98.6
Msa0109270 AT1G76040.2 38.356 146 88 2 1 146 405 548 3.05e-26 103
Msa0109270 AT4G04720.2 39.597 149 86 3 1 148 373 518 5.37e-26 102
Msa0109270 AT4G04720.1 39.597 149 86 3 1 148 373 518 5.37e-26 102
Msa0109270 AT3G59440.1 40.714 140 80 2 11 148 50 188 2.96e-25 95.9
Msa0109270 AT3G59440.1 45.946 74 38 1 2 73 113 186 2.51e-11 59.3
Msa0109270 AT4G21940.1 38.255 149 88 3 1 148 395 540 4.53e-25 100
Msa0109270 AT4G21940.2 38.255 149 88 3 1 148 395 540 5.12e-25 100
Msa0109270 AT1G35670.1 39.726 146 85 2 1 146 320 462 5.69e-25 99.8
Msa0109270 AT4G23650.1 37.162 148 87 3 1 146 372 515 5.96e-25 99.8
Msa0109270 AT4G03290.1 40.426 141 79 2 11 146 4 144 9.36e-25 93.6
Msa0109270 AT4G03290.1 49.231 65 31 1 13 75 82 146 8.53e-13 62.4
Msa0109270 AT5G23580.1 39.726 146 85 2 1 146 316 458 1.09e-24 99.0
Msa0109270 AT5G17470.1 40.580 138 80 1 11 146 1 138 1.10e-24 93.2
Msa0109270 AT3G50770.1 38.571 140 81 2 12 146 64 203 1.56e-24 94.4
Msa0109270 AT3G50770.1 43.077 65 37 0 82 146 61 125 1.96e-11 59.7
Msa0109270 AT4G09570.1 40.541 148 81 3 1 146 319 461 1.78e-24 98.2
Msa0109270 AT5G19360.1 38.776 147 86 3 1 146 362 505 5.79e-24 97.1
Msa0109270 AT4G12860.1 40.426 141 82 1 12 150 5 145 1.47e-23 90.1
Msa0109270 AT4G04740.4 38.462 143 84 3 5 146 366 505 1.64e-23 95.5
Msa0109270 AT4G04740.6 38.462 143 84 3 5 146 366 505 1.64e-23 95.5
Msa0109270 AT4G04740.5 38.462 143 84 3 5 146 366 505 1.64e-23 95.5
Msa0109270 AT4G04740.3 38.462 143 84 3 5 146 366 505 1.64e-23 95.5
Msa0109270 AT4G04740.1 38.462 143 84 3 5 146 366 505 1.64e-23 95.5
Msa0109270 AT4G04740.7 38.462 143 84 3 5 146 366 505 1.64e-23 95.5
Msa0109270 AT5G12180.1 38.095 147 87 3 1 146 367 510 2.20e-23 95.1
Msa0109270 AT4G04700.1 40.268 149 85 3 1 148 325 470 4.05e-23 94.4
Msa0109270 AT4G04695.1 38.255 149 88 3 1 148 325 470 4.50e-23 94.4
Msa0109270 AT3G07490.1 41.304 138 79 1 11 146 4 141 5.32e-23 89.0
Msa0109270 AT1G61950.1 34.667 150 92 3 1 148 393 538 1.58e-22 92.8
Msa0109270 AT2G36180.1 43.796 137 74 2 13 146 1 137 1.68e-22 87.4
Msa0109270 AT3G20410.2 33.784 148 96 2 1 148 385 530 2.37e-22 92.4
Msa0109270 AT3G20410.1 33.784 148 96 2 1 148 385 530 2.37e-22 92.4
Msa0109270 AT2G41410.1 38.194 144 86 3 8 148 66 209 4.05e-22 88.2
Msa0109270 AT4G38230.1 35.616 146 91 2 1 146 174 316 4.86e-22 90.1
Msa0109270 AT4G38230.2 35.616 146 91 2 1 146 348 490 1.06e-21 90.5
Msa0109270 AT4G38230.4 35.616 146 91 2 1 146 318 460 1.28e-21 90.1
Msa0109270 AT4G38230.3 35.616 146 91 2 1 146 318 460 1.28e-21 90.1
Msa0109270 AT2G17290.1 35.616 146 91 2 1 146 379 521 1.81e-21 89.7
Msa0109270 AT2G17290.2 35.616 146 91 2 1 146 379 521 1.81e-21 89.7
Msa0109270 AT1G50700.1 32.432 148 98 2 1 148 367 512 1.95e-21 89.7
Msa0109270 AT3G51850.1 35.135 148 95 1 1 148 348 494 2.56e-21 89.4
Msa0109270 AT3G03400.1 35.878 131 82 1 11 139 4 134 5.15e-21 83.2
Msa0109270 AT2G38910.1 34.000 150 96 2 1 150 428 574 1.67e-20 87.0
Msa0109270 AT3G10660.2 32.877 146 95 2 1 146 480 622 1.74e-20 87.0
Msa0109270 AT3G10660.1 32.877 146 95 2 1 146 480 622 1.74e-20 87.0
Msa0109270 AT5G04870.1 33.562 146 94 2 1 146 444 586 2.32e-20 86.7
Msa0109270 AT1G74740.1 35.374 147 92 3 1 146 353 497 7.87e-20 85.1
Msa0109270 AT5G12480.2 35.374 147 93 2 1 146 259 404 8.63e-20 84.7
Msa0109270 AT4G35310.2 32.877 146 95 2 1 146 391 533 1.05e-19 84.7
Msa0109270 AT4G35310.1 32.877 146 95 2 1 146 391 533 1.05e-19 84.7
Msa0109270 AT5G12480.1 35.374 147 93 2 1 146 353 498 1.30e-19 84.7
Msa0109270 AT3G03410.1 36.496 137 76 2 14 150 4 129 3.11e-19 78.6
Msa0109270 AT4G04710.3 35.374 147 91 3 1 146 312 455 5.09e-19 82.8
Msa0109270 AT4G04710.2 35.374 147 91 3 1 146 326 469 5.47e-19 82.8
Msa0109270 AT4G20780.1 34.591 159 84 2 11 149 28 186 5.98e-19 79.3
Msa0109270 AT4G04710.1 35.374 147 91 3 1 146 339 482 6.02e-19 82.8
Msa0109270 AT3G57530.1 34.228 149 94 3 1 148 357 502 6.50e-19 82.4
Msa0109270 AT1G18890.1 36.486 148 89 4 1 146 357 501 3.73e-18 80.5
Msa0109270 AT5G19450.2 34.014 147 95 2 1 146 351 496 7.58e-18 79.3
Msa0109270 AT5G19450.1 34.014 147 95 2 1 146 351 496 7.58e-18 79.3
Msa0109270 AT4G04710.4 35.570 149 90 4 1 146 339 484 8.31e-18 79.3
Msa0109270 AT5G42380.1 34.058 138 90 1 10 146 47 184 8.45e-18 76.3
Msa0109270 AT1G50700.2 28.161 174 97 3 1 148 367 538 5.82e-17 77.0
Msa0109270 AT5G44460.1 34.868 152 85 3 11 149 27 177 7.77e-17 73.6
Msa0109270 AT4G04740.2 35.659 129 79 3 5 132 366 491 1.63e-16 75.9
Msa0109270 AT2G31500.1 32.450 151 98 3 1 148 360 509 1.94e-16 75.5
Msa0109270 AT2G41860.2 31.081 148 101 1 1 148 348 494 5.03e-16 74.3
Msa0109270 AT2G41860.1 31.081 148 101 1 1 148 348 494 5.44e-16 74.3
Msa0109270 AT5G66210.1 27.922 154 99 5 1 148 358 505 6.08e-16 73.9
Msa0109270 AT5G66210.2 27.922 154 99 5 1 148 358 505 6.08e-16 73.9
Msa0109270 AT3G51850.2 37.736 106 65 1 1 106 348 452 1.07e-15 73.2
Msa0109270 AT2G17890.1 26.623 154 101 5 1 148 404 551 4.24e-15 71.6
Msa0109270 AT4G21940.3 38.384 99 60 1 1 99 395 492 6.02e-15 71.2
Msa0109270 AT1G76040.3 35.644 101 64 1 1 101 405 504 5.17e-14 68.6
Msa0109270 AT1G76640.1 28.873 142 99 1 7 146 17 158 9.15e-14 65.1
Msa0109270 AT1G76650.1 32.143 140 94 1 7 146 38 176 1.03e-13 65.5
Msa0109270 AT1G76650.3 32.143 140 94 1 7 146 38 176 1.03e-13 65.5
Msa0109270 AT1G21550.1 32.877 146 90 3 12 149 10 155 3.44e-13 63.5
Msa0109270 AT1G50700.3 33.333 99 65 1 1 99 367 464 2.79e-12 63.5
Msa0109270 AT5G66210.3 26.718 131 90 3 1 125 358 488 1.16e-11 61.6
Msa0109270 AT4G36070.1 25.974 154 102 5 1 148 367 514 1.91e-11 61.2
Msa0109270 AT4G36070.2 25.974 154 102 5 1 148 367 514 1.98e-11 61.2
Msa0109270 AT5G49480.1 31.429 140 90 3 13 146 19 158 2.34e-11 58.9

Find 39 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTATTCAAATTTGTTAATT+TGG 0.116892 1_3:+21214634 Msa0109270:three_prime_UTR
TGTTGAGTTCTTGAACTTAA+TGG 0.156792 1_3:+21213190 Msa0109270:CDS
CAACCTCGTTTATCATTTCT+TGG 0.231199 1_3:-21213139 None:intergenic
GAGACACGTTATGATCAATT+TGG 0.239118 1_3:+21214460 Msa0109270:CDS
CTTCTTTGATCTCAACAATT+TGG 0.239416 1_3:-21212784 None:intergenic
TGAAAGAGGATGAGATTAAT+AGG 0.303679 1_3:-21214659 None:intergenic
GATGATTAAAGAAGCAGATT+TGG 0.325770 1_3:+21214514 Msa0109270:CDS
CTTGGAGCTCTTCCTCTGTT+GGG 0.341743 1_3:-21213121 None:intergenic
TCTTGGAGCTCTTCCTCTGT+TGG 0.366378 1_3:-21213122 None:intergenic
TGCAACTGTAATTAGGTCAT+TGG 0.376466 1_3:+21213091 Msa0109270:CDS
AGACACGTTATGATCAATTT+GGG 0.383512 1_3:+21214461 Msa0109270:CDS
AGATCTCAAAGAGGCTTTCA+AGG 0.399505 1_3:+21213335 Msa0109270:CDS
AAGAACTTGCAACTGTAATT+AGG 0.411307 1_3:+21213084 Msa0109270:CDS
TGGGTGGGATGTCACTCTAA+TGG 0.423891 1_3:-21214762 None:intergenic
GAGGTTGATGCAGATGGAAA+TGG 0.427391 1_3:+21213155 Msa0109270:CDS
CATTTATTATTTCTTGAAAG+AGG 0.434761 1_3:-21214673 None:intergenic
CAAGAACTCAACAAATTCAA+TGG 0.441259 1_3:-21213180 None:intergenic
GGGTGGGATGTCACTCTAAT+GGG 0.445878 1_3:-21214761 None:intergenic
ATCTTTGTCAAACAAGCAAA+AGG 0.476240 1_3:-21212807 None:intergenic
GGATAGTTTATTTCATCCAA+TGG 0.496741 1_3:-21214585 None:intergenic
TTTCAAACTTCAAAGAGTGT+TGG 0.497299 1_3:+21212699 Msa0109270:five_prime_UTR
GTTAAGATGATGATGACCAT+TGG 0.525117 1_3:+21214569 Msa0109270:CDS
GAAGCAGATTTGGACGGTGA+TGG 0.535179 1_3:+21214524 Msa0109270:CDS
GGGATGTCACTCTAATGGGT+TGG 0.547301 1_3:-21214757 None:intergenic
ATAAACGAGGTTGATGCAGA+TGG 0.548616 1_3:+21213149 Msa0109270:CDS
AAATGATATATGTTAAATTG+TGG 0.554936 1_3:-21214606 None:intergenic
TTTAATAGGTTGCATTACTG+TGG 0.584530 1_3:+21213061 Msa0109270:intron
TGGTTATATTTCCGCTAGTG+AGG 0.592900 1_3:+21213377 Msa0109270:CDS
GTTGAACAAATCAAATGATG+TGG 0.593439 1_3:-21214782 None:intergenic
AAAATTAACTGATGAAGAGG+TGG 0.600647 1_3:+21214487 Msa0109270:CDS
ATTAAAGAAGCAGATTTGGA+CGG 0.618310 1_3:+21214518 Msa0109270:CDS
TTGTTTGACAAAGATGGAGA+TGG 0.622259 1_3:+21212815 Msa0109270:CDS
AACAAATCAAATGATGTGGG+TGG 0.623765 1_3:-21214778 None:intergenic
TGCAGATGAAGATCTCAAAG+AGG 0.636781 1_3:+21213326 Msa0109270:CDS
ACAAATCAAATGATGTGGGT+GGG 0.653799 1_3:-21214777 None:intergenic
TTGAACAAATCAAATGATGT+GGG 0.659925 1_3:-21214781 None:intergenic
ATATTTATATACCTCACTAG+CGG 0.685027 1_3:-21213388 None:intergenic
ATTGGATCAAAACCCAACAG+AGG 0.719116 1_3:+21213109 Msa0109270:CDS
GCTCCAAGAAATGATAAACG+AGG 0.724641 1_3:+21213136 Msa0109270:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATAATTGAAATGAAATA+TGG - chr1_3:21212876-21212895 None:intergenic 10.0%
!!! TATAATAAAACAATTTTTTG+AGG + chr1_3:21213953-21213972 Msa0109270:intron 10.0%
!!! ATAATAAAACAATTTTTTGA+GGG + chr1_3:21213954-21213973 Msa0109270:intron 10.0%
!!! AATTTTTTTCATAGTTTTAA+TGG - chr1_3:21214047-21214066 None:intergenic 10.0%
!! TATATAATTGAAATGAAATA+TGG - chr1_3:21212876-21212895 None:intergenic 10.0%
!!! TATAATAAAACAATTTTTTG+AGG + chr1_3:21213953-21213972 Msa0109270:intron 10.0%
!!! ATAATAAAACAATTTTTTGA+GGG + chr1_3:21213954-21213973 Msa0109270:intron 10.0%
!!! AATTTTTTTCATAGTTTTAA+TGG - chr1_3:21214047-21214066 None:intergenic 10.0%
!!! CAATTTTATCATATAGTATA+AGG - chr1_3:21212975-21212994 None:intergenic 15.0%
!! CTTTATGATTAATCTTTAAT+AGG + chr1_3:21213047-21213066 Msa0109270:intron 15.0%
!!! AATAATTACTTTCATTTTCT+TGG - chr1_3:21213216-21213235 None:intergenic 15.0%
!!! AACAATTTTTTTCTTGTATA+TGG + chr1_3:21213677-21213696 Msa0109270:intron 15.0%
!! ATAACAAAGAAGTTAAATAA+GGG - chr1_3:21213781-21213800 None:intergenic 15.0%
!! TATAACAAAGAAGTTAAATA+AGG - chr1_3:21213782-21213801 None:intergenic 15.0%
!!! TTATTTAACTTCTTTGTTAT+AGG + chr1_3:21213781-21213800 Msa0109270:intron 15.0%
!! AAATGATATATGTTAAATTG+TGG - chr1_3:21214609-21214628 None:intergenic 15.0%
!!! GTTATTCAAATTTGTTAATT+TGG + chr1_3:21214634-21214653 Msa0109270:three_prime_UTR 15.0%
!!! GTTTTATTATTTATTGTTTG+TGG + chr1_3:21214695-21214714 Msa0109270:three_prime_UTR 15.0%
!!! CAATTTTATCATATAGTATA+AGG - chr1_3:21212975-21212994 None:intergenic 15.0%
!! CTTTATGATTAATCTTTAAT+AGG + chr1_3:21213047-21213066 Msa0109270:intron 15.0%
!!! AATAATTACTTTCATTTTCT+TGG - chr1_3:21213216-21213235 None:intergenic 15.0%
!!! AACAATTTTTTTCTTGTATA+TGG + chr1_3:21213677-21213696 Msa0109270:intron 15.0%
!! ATAACAAAGAAGTTAAATAA+GGG - chr1_3:21213781-21213800 None:intergenic 15.0%
!! TATAACAAAGAAGTTAAATA+AGG - chr1_3:21213782-21213801 None:intergenic 15.0%
!!! TTATTTAACTTCTTTGTTAT+AGG + chr1_3:21213781-21213800 Msa0109270:intron 15.0%
!! AAATGATATATGTTAAATTG+TGG - chr1_3:21214609-21214628 None:intergenic 15.0%
!!! GTTATTCAAATTTGTTAATT+TGG + chr1_3:21214634-21214653 Msa0109270:three_prime_UTR 15.0%
!!! GTTTTATTATTTATTGTTTG+TGG + chr1_3:21214695-21214714 Msa0109270:three_prime_UTR 15.0%
!! TGAAAAACAAGCATATAAAA+TGG + chr1_3:21212742-21212761 Msa0109270:exon 20.0%
!! CATTATTGTAAGAAATGAAA+AGG - chr1_3:21213243-21213262 None:intergenic 20.0%
!!! GTTTTTGATAAAGATCAAAA+TGG + chr1_3:21213357-21213376 Msa0109270:CDS 20.0%
!!! TATATAAATATTTTCCTCTC+CGG + chr1_3:21213400-21213419 Msa0109270:intron 20.0%
!! AATAACTGTATAAGTGTAAT+GGG - chr1_3:21213649-21213668 None:intergenic 20.0%
!! TAATAACTGTATAAGTGTAA+TGG - chr1_3:21213650-21213669 None:intergenic 20.0%
!! ACACTTATACAGTTATTAAA+TGG + chr1_3:21213652-21213671 Msa0109270:intron 20.0%
!!! TTTTCTTGTATATGGAAAAA+AGG + chr1_3:21213685-21213704 Msa0109270:intron 20.0%
!! ATGTATTATGATAGATTTCA+TGG + chr1_3:21213715-21213734 Msa0109270:intron 20.0%
!!! TTTTTTTGTTGAATGAATGA+GGG - chr1_3:21213743-21213762 None:intergenic 20.0%
!!! TTTTTTTTGTTGAATGAATG+AGG - chr1_3:21213744-21213763 None:intergenic 20.0%
!! CAACAAAAAAAAAAACTTCA+TGG + chr1_3:21213752-21213771 Msa0109270:intron 20.0%
!! TAACAAAGAAGTTAAATAAG+GGG - chr1_3:21213780-21213799 None:intergenic 20.0%
!! AAAAATTTATTGAAGCATAG+AGG + chr1_3:21214060-21214079 Msa0109270:intron 20.0%
!!! CATTTATTATTTCTTGAAAG+AGG - chr1_3:21214676-21214695 None:intergenic 20.0%
!! TGAAAAACAAGCATATAAAA+TGG + chr1_3:21212742-21212761 Msa0109270:exon 20.0%
!! CATTATTGTAAGAAATGAAA+AGG - chr1_3:21213243-21213262 None:intergenic 20.0%
!!! GTTTTTGATAAAGATCAAAA+TGG + chr1_3:21213357-21213376 Msa0109270:CDS 20.0%
!!! TATATAAATATTTTCCTCTC+CGG + chr1_3:21213400-21213419 Msa0109270:intron 20.0%
!! AATAACTGTATAAGTGTAAT+GGG - chr1_3:21213649-21213668 None:intergenic 20.0%
!! TAATAACTGTATAAGTGTAA+TGG - chr1_3:21213650-21213669 None:intergenic 20.0%
!! ACACTTATACAGTTATTAAA+TGG + chr1_3:21213652-21213671 Msa0109270:intron 20.0%
!!! TTTTCTTGTATATGGAAAAA+AGG + chr1_3:21213685-21213704 Msa0109270:intron 20.0%
!! ATGTATTATGATAGATTTCA+TGG + chr1_3:21213715-21213734 Msa0109270:intron 20.0%
!!! TTTTTTTGTTGAATGAATGA+GGG - chr1_3:21213743-21213762 None:intergenic 20.0%
!!! TTTTTTTTGTTGAATGAATG+AGG - chr1_3:21213744-21213763 None:intergenic 20.0%
!! CAACAAAAAAAAAAACTTCA+TGG + chr1_3:21213752-21213771 Msa0109270:intron 20.0%
!! TAACAAAGAAGTTAAATAAG+GGG - chr1_3:21213780-21213799 None:intergenic 20.0%
!! AAAAATTTATTGAAGCATAG+AGG + chr1_3:21214060-21214079 Msa0109270:intron 20.0%
!!! CATTTATTATTTCTTGAAAG+AGG - chr1_3:21214676-21214695 None:intergenic 20.0%
! ATATTGTCAACAATCAAAGA+AGG - chr1_3:21212909-21212928 None:intergenic 25.0%
! ATATTTATATACCTCACTAG+CGG - chr1_3:21213391-21213410 None:intergenic 25.0%
! TAATCTAAACATGCATTAAC+CGG - chr1_3:21213422-21213441 None:intergenic 25.0%
! AACAAAGAAGTTAAATAAGG+GGG - chr1_3:21213779-21213798 None:intergenic 25.0%
!! TAACTTCTTTGTTATAGGAT+TGG + chr1_3:21213786-21213805 Msa0109270:intron 25.0%
! AAAAAATCTCTTGCAACAAA+AGG - chr1_3:21214113-21214132 None:intergenic 25.0%
! GAAAAACATTCAACTTCTAT+AGG - chr1_3:21214138-21214157 None:intergenic 25.0%
!! CTATTATTATTCATCGATTG+CGG - chr1_3:21214286-21214305 None:intergenic 25.0%
! TGAAAAATTAACTGATGAAG+AGG + chr1_3:21214484-21214503 Msa0109270:CDS 25.0%
! ATATTGTCAACAATCAAAGA+AGG - chr1_3:21212909-21212928 None:intergenic 25.0%
! ATATTTATATACCTCACTAG+CGG - chr1_3:21213391-21213410 None:intergenic 25.0%
! TAATCTAAACATGCATTAAC+CGG - chr1_3:21213422-21213441 None:intergenic 25.0%
! AACAAAGAAGTTAAATAAGG+GGG - chr1_3:21213779-21213798 None:intergenic 25.0%
!! TAACTTCTTTGTTATAGGAT+TGG + chr1_3:21213786-21213805 Msa0109270:intron 25.0%
! AAAAAATCTCTTGCAACAAA+AGG - chr1_3:21214113-21214132 None:intergenic 25.0%
! GAAAAACATTCAACTTCTAT+AGG - chr1_3:21214138-21214157 None:intergenic 25.0%
!! CTATTATTATTCATCGATTG+CGG - chr1_3:21214286-21214305 None:intergenic 25.0%
! TGAAAAATTAACTGATGAAG+AGG + chr1_3:21214484-21214503 Msa0109270:CDS 25.0%
! TTTCAAACTTCAAAGAGTGT+TGG + chr1_3:21212699-21212718 Msa0109270:five_prime_UTR 30.0%
CTTCTTTGATCTCAACAATT+TGG - chr1_3:21212787-21212806 None:intergenic 30.0%
ATCTTTGTCAAACAAGCAAA+AGG - chr1_3:21212810-21212829 None:intergenic 30.0%
! TTTTGCTTGTTTGACAAAGA+TGG + chr1_3:21212809-21212828 Msa0109270:CDS 30.0%
CACATACACACATAATAAGT+TGG + chr1_3:21212999-21213018 Msa0109270:intron 30.0%
TTTAATAGGTTGCATTACTG+TGG + chr1_3:21213061-21213080 Msa0109270:intron 30.0%
AAGAACTTGCAACTGTAATT+AGG + chr1_3:21213084-21213103 Msa0109270:CDS 30.0%
CAAGAACTCAACAAATTCAA+TGG - chr1_3:21213183-21213202 None:intergenic 30.0%
TGTTGAGTTCTTGAACTTAA+TGG + chr1_3:21213190-21213209 Msa0109270:CDS 30.0%
CAACGAGTTTCACATAATTA+CGG - chr1_3:21213511-21213530 None:intergenic 30.0%
! AAGAAAAAAGTGTGATGGAA+AGG - chr1_3:21213615-21213634 None:intergenic 30.0%
! CACTTAAGAAAAAAGTGTGA+TGG - chr1_3:21213620-21213639 None:intergenic 30.0%
ACAAAGAAGTTAAATAAGGG+GGG - chr1_3:21213778-21213797 None:intergenic 30.0%
ATGCACATTAATTTCACACA+TGG + chr1_3:21214192-21214211 Msa0109270:intron 30.0%
AGACACGTTATGATCAATTT+GGG + chr1_3:21214461-21214480 Msa0109270:CDS 30.0%
AAAATTAACTGATGAAGAGG+TGG + chr1_3:21214487-21214506 Msa0109270:CDS 30.0%
GATGATTAAAGAAGCAGATT+TGG + chr1_3:21214514-21214533 Msa0109270:CDS 30.0%
ATTAAAGAAGCAGATTTGGA+CGG + chr1_3:21214518-21214537 Msa0109270:CDS 30.0%
GGATAGTTTATTTCATCCAA+TGG - chr1_3:21214588-21214607 None:intergenic 30.0%
TGAAAGAGGATGAGATTAAT+AGG - chr1_3:21214662-21214681 None:intergenic 30.0%
! TTTCAAACTTCAAAGAGTGT+TGG + chr1_3:21212699-21212718 Msa0109270:five_prime_UTR 30.0%
CTTCTTTGATCTCAACAATT+TGG - chr1_3:21212787-21212806 None:intergenic 30.0%
ATCTTTGTCAAACAAGCAAA+AGG - chr1_3:21212810-21212829 None:intergenic 30.0%
! TTTTGCTTGTTTGACAAAGA+TGG + chr1_3:21212809-21212828 Msa0109270:CDS 30.0%
CACATACACACATAATAAGT+TGG + chr1_3:21212999-21213018 Msa0109270:intron 30.0%
TTTAATAGGTTGCATTACTG+TGG + chr1_3:21213061-21213080 Msa0109270:intron 30.0%
AAGAACTTGCAACTGTAATT+AGG + chr1_3:21213084-21213103 Msa0109270:CDS 30.0%
CAAGAACTCAACAAATTCAA+TGG - chr1_3:21213183-21213202 None:intergenic 30.0%
TGTTGAGTTCTTGAACTTAA+TGG + chr1_3:21213190-21213209 Msa0109270:CDS 30.0%
CAACGAGTTTCACATAATTA+CGG - chr1_3:21213511-21213530 None:intergenic 30.0%
! AAGAAAAAAGTGTGATGGAA+AGG - chr1_3:21213615-21213634 None:intergenic 30.0%
! CACTTAAGAAAAAAGTGTGA+TGG - chr1_3:21213620-21213639 None:intergenic 30.0%
ACAAAGAAGTTAAATAAGGG+GGG - chr1_3:21213778-21213797 None:intergenic 30.0%
ATGCACATTAATTTCACACA+TGG + chr1_3:21214192-21214211 Msa0109270:intron 30.0%
AGACACGTTATGATCAATTT+GGG + chr1_3:21214461-21214480 Msa0109270:CDS 30.0%
AAAATTAACTGATGAAGAGG+TGG + chr1_3:21214487-21214506 Msa0109270:CDS 30.0%
GATGATTAAAGAAGCAGATT+TGG + chr1_3:21214514-21214533 Msa0109270:CDS 30.0%
ATTAAAGAAGCAGATTTGGA+CGG + chr1_3:21214518-21214537 Msa0109270:CDS 30.0%
GGATAGTTTATTTCATCCAA+TGG - chr1_3:21214588-21214607 None:intergenic 30.0%
TGAAAGAGGATGAGATTAAT+AGG - chr1_3:21214662-21214681 None:intergenic 30.0%
TTGTTTGACAAAGATGGAGA+TGG + chr1_3:21212815-21212834 Msa0109270:CDS 35.0%
TGCAACTGTAATTAGGTCAT+TGG + chr1_3:21213091-21213110 Msa0109270:CDS 35.0%
CAACCTCGTTTATCATTTCT+TGG - chr1_3:21213142-21213161 None:intergenic 35.0%
TGCATCAGTTTCCTAAATGA+GGG - chr1_3:21213310-21213329 None:intergenic 35.0%
ACACTTCTTCAATCAACTAG+AGG + chr1_3:21214242-21214261 Msa0109270:intron 35.0%
! ATTATTCATCGATTGCGGAA+AGG - chr1_3:21214281-21214300 None:intergenic 35.0%
GAGACACGTTATGATCAATT+TGG + chr1_3:21214460-21214479 Msa0109270:CDS 35.0%
! GTTAAGATGATGATGACCAT+TGG + chr1_3:21214569-21214588 Msa0109270:CDS 35.0%
ACAAATCAAATGATGTGGGT+GGG - chr1_3:21214780-21214799 None:intergenic 35.0%
AACAAATCAAATGATGTGGG+TGG - chr1_3:21214781-21214800 None:intergenic 35.0%
TTGTTTGACAAAGATGGAGA+TGG + chr1_3:21212815-21212834 Msa0109270:CDS 35.0%
TGCAACTGTAATTAGGTCAT+TGG + chr1_3:21213091-21213110 Msa0109270:CDS 35.0%
CAACCTCGTTTATCATTTCT+TGG - chr1_3:21213142-21213161 None:intergenic 35.0%
TGCATCAGTTTCCTAAATGA+GGG - chr1_3:21213310-21213329 None:intergenic 35.0%
ACACTTCTTCAATCAACTAG+AGG + chr1_3:21214242-21214261 Msa0109270:intron 35.0%
! ATTATTCATCGATTGCGGAA+AGG - chr1_3:21214281-21214300 None:intergenic 35.0%
GAGACACGTTATGATCAATT+TGG + chr1_3:21214460-21214479 Msa0109270:CDS 35.0%
! GTTAAGATGATGATGACCAT+TGG + chr1_3:21214569-21214588 Msa0109270:CDS 35.0%
ACAAATCAAATGATGTGGGT+GGG - chr1_3:21214780-21214799 None:intergenic 35.0%
AACAAATCAAATGATGTGGG+TGG - chr1_3:21214781-21214800 None:intergenic 35.0%
ATTGGATCAAAACCCAACAG+AGG + chr1_3:21213109-21213128 Msa0109270:CDS 40.0%
GCTCCAAGAAATGATAAACG+AGG + chr1_3:21213136-21213155 Msa0109270:CDS 40.0%
!! ATAAACGAGGTTGATGCAGA+TGG + chr1_3:21213149-21213168 Msa0109270:CDS 40.0%
!! CTATTTTTCCCCCCTCATTT+AGG + chr1_3:21213296-21213315 Msa0109270:intron 40.0%
ATCAGTTTCCTAAATGAGGG+GGG - chr1_3:21213307-21213326 None:intergenic 40.0%
CATCAGTTTCCTAAATGAGG+GGG - chr1_3:21213308-21213327 None:intergenic 40.0%
GCATCAGTTTCCTAAATGAG+GGG - chr1_3:21213309-21213328 None:intergenic 40.0%
CTGCATCAGTTTCCTAAATG+AGG - chr1_3:21213311-21213330 None:intergenic 40.0%
TGCAGATGAAGATCTCAAAG+AGG + chr1_3:21213326-21213345 Msa0109270:CDS 40.0%
AGATCTCAAAGAGGCTTTCA+AGG + chr1_3:21213335-21213354 Msa0109270:CDS 40.0%
TGGTTATATTTCCGCTAGTG+AGG + chr1_3:21213377-21213396 Msa0109270:CDS 40.0%
TAAACATGCATTAACCGGAG+AGG - chr1_3:21213417-21213436 None:intergenic 40.0%
TCGTTGTCATGCAATTGTGT+AGG + chr1_3:21213525-21213544 Msa0109270:intron 40.0%
TCTCTTGCAACAAAAGGAAC+AGG - chr1_3:21214107-21214126 None:intergenic 40.0%
ATTGGATCAAAACCCAACAG+AGG + chr1_3:21213109-21213128 Msa0109270:CDS 40.0%
GCTCCAAGAAATGATAAACG+AGG + chr1_3:21213136-21213155 Msa0109270:CDS 40.0%
!! ATAAACGAGGTTGATGCAGA+TGG + chr1_3:21213149-21213168 Msa0109270:CDS 40.0%
!! CTATTTTTCCCCCCTCATTT+AGG + chr1_3:21213296-21213315 Msa0109270:intron 40.0%
ATCAGTTTCCTAAATGAGGG+GGG - chr1_3:21213307-21213326 None:intergenic 40.0%
CATCAGTTTCCTAAATGAGG+GGG - chr1_3:21213308-21213327 None:intergenic 40.0%
GCATCAGTTTCCTAAATGAG+GGG - chr1_3:21213309-21213328 None:intergenic 40.0%
CTGCATCAGTTTCCTAAATG+AGG - chr1_3:21213311-21213330 None:intergenic 40.0%
TGCAGATGAAGATCTCAAAG+AGG + chr1_3:21213326-21213345 Msa0109270:CDS 40.0%
AGATCTCAAAGAGGCTTTCA+AGG + chr1_3:21213335-21213354 Msa0109270:CDS 40.0%
TGGTTATATTTCCGCTAGTG+AGG + chr1_3:21213377-21213396 Msa0109270:CDS 40.0%
TAAACATGCATTAACCGGAG+AGG - chr1_3:21213417-21213436 None:intergenic 40.0%
TCGTTGTCATGCAATTGTGT+AGG + chr1_3:21213525-21213544 Msa0109270:intron 40.0%
TCTCTTGCAACAAAAGGAAC+AGG - chr1_3:21214107-21214126 None:intergenic 40.0%
TGAAAGCAGAGAGAGAGAGA+GGG - chr1_3:21212684-21212703 None:intergenic 45.0%
TTGAAAGCAGAGAGAGAGAG+AGG - chr1_3:21212685-21212704 None:intergenic 45.0%
!! GAGGTTGATGCAGATGGAAA+TGG + chr1_3:21213155-21213174 Msa0109270:CDS 45.0%
TGAAAGCAGAGAGAGAGAGA+GGG - chr1_3:21212684-21212703 None:intergenic 45.0%
TTGAAAGCAGAGAGAGAGAG+AGG - chr1_3:21212685-21212704 None:intergenic 45.0%
!! GAGGTTGATGCAGATGGAAA+TGG + chr1_3:21213155-21213174 Msa0109270:CDS 45.0%
AAAGCAGAGAGAGAGAGAGG+GGG - chr1_3:21212682-21212701 None:intergenic 50.0%
GAAAGCAGAGAGAGAGAGAG+GGG - chr1_3:21212683-21212702 None:intergenic 50.0%
CTTGGAGCTCTTCCTCTGTT+GGG - chr1_3:21213124-21213143 None:intergenic 50.0%
TCTTGGAGCTCTTCCTCTGT+TGG - chr1_3:21213125-21213144 None:intergenic 50.0%
GAAGCAGATTTGGACGGTGA+TGG + chr1_3:21214524-21214543 Msa0109270:CDS 50.0%
! GGGATGTCACTCTAATGGGT+TGG - chr1_3:21214760-21214779 None:intergenic 50.0%
GGGTGGGATGTCACTCTAAT+GGG - chr1_3:21214764-21214783 None:intergenic 50.0%
TGGGTGGGATGTCACTCTAA+TGG - chr1_3:21214765-21214784 None:intergenic 50.0%
AAAGCAGAGAGAGAGAGAGG+GGG - chr1_3:21212682-21212701 None:intergenic 50.0%
GAAAGCAGAGAGAGAGAGAG+GGG - chr1_3:21212683-21212702 None:intergenic 50.0%
CTTGGAGCTCTTCCTCTGTT+GGG - chr1_3:21213124-21213143 None:intergenic 50.0%
TCTTGGAGCTCTTCCTCTGT+TGG - chr1_3:21213125-21213144 None:intergenic 50.0%
GAAGCAGATTTGGACGGTGA+TGG + chr1_3:21214524-21214543 Msa0109270:CDS 50.0%
! GGGATGTCACTCTAATGGGT+TGG - chr1_3:21214760-21214779 None:intergenic 50.0%
GGGTGGGATGTCACTCTAAT+GGG - chr1_3:21214764-21214783 None:intergenic 50.0%
TGGGTGGGATGTCACTCTAA+TGG - chr1_3:21214765-21214784 None:intergenic 50.0%
AAGCAGAGAGAGAGAGAGGG+GGG - chr1_3:21212681-21212700 None:intergenic 55.0%
AAGCAGAGAGAGAGAGAGGG+GGG - chr1_3:21212681-21212700 None:intergenic 55.0%
AGCAGAGAGAGAGAGAGGGG+GGG - chr1_3:21212680-21212699 None:intergenic 60.0%
AGCAGAGAGAGAGAGAGGGG+GGG - chr1_3:21212680-21212699 None:intergenic 60.0%
AGAGAGAGAGAGAGGGGGGG+GGG - chr1_3:21212677-21212696 None:intergenic 65.0%
CAGAGAGAGAGAGAGGGGGG+GGG - chr1_3:21212678-21212697 None:intergenic 65.0%
GCAGAGAGAGAGAGAGGGGG+GGG - chr1_3:21212679-21212698 None:intergenic 65.0%
AGAGAGAGAGAGAGGGGGGG+GGG - chr1_3:21212677-21212696 None:intergenic 65.0%
CAGAGAGAGAGAGAGGGGGG+GGG - chr1_3:21212678-21212697 None:intergenic 65.0%
GCAGAGAGAGAGAGAGGGGG+GGG - chr1_3:21212679-21212698 None:intergenic 65.0%
AGAGAGAGAGAGGGGGGGGG+GGG - chr1_3:21212675-21212694 None:intergenic 70.0%
GAGAGAGAGAGAGGGGGGGG+GGG - chr1_3:21212676-21212695 None:intergenic 70.0%
AGAGAGAGAGAGGGGGGGGG+GGG - chr1_3:21212675-21212694 None:intergenic 70.0%
GAGAGAGAGAGAGGGGGGGG+GGG - chr1_3:21212676-21212695 None:intergenic 70.0%
GAGAGAGAGAGGGGGGGGGG+GGG - chr1_3:21212674-21212693 None:intergenic 75.0%
AGAGAGAGAGGGGGGGGGGG+GGG - chr1_3:21212673-21212692 None:intergenic 75.0%
GAGAGAGAGAGGGGGGGGGG+GGG - chr1_3:21212674-21212693 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 21212671 21214801 21212671 ID=Msa0109270;Name=Msa0109270
chr1_3 mRNA 21212671 21214801 21212671 ID=Msa0109270-mRNA-1;Parent=Msa0109270;Name=Msa0109270-mRNA-1;_AED=0.03;_eAED=0.03;_QI=90|1|1|1|1|1|4|206|150
chr1_3 exon 21212671 21212836 21212671 ID=Msa0109270-mRNA-1:exon:7591;Parent=Msa0109270-mRNA-1
chr1_3 exon 21213069 21213226 21213069 ID=Msa0109270-mRNA-1:exon:7592;Parent=Msa0109270-mRNA-1
chr1_3 exon 21213318 21213398 21213318 ID=Msa0109270-mRNA-1:exon:7593;Parent=Msa0109270-mRNA-1
chr1_3 exon 21214458 21214801 21214458 ID=Msa0109270-mRNA-1:exon:7594;Parent=Msa0109270-mRNA-1
chr1_3 five_prime_UTR 21212671 21212760 21212671 ID=Msa0109270-mRNA-1:five_prime_utr;Parent=Msa0109270-mRNA-1
chr1_3 CDS 21212761 21212836 21212761 ID=Msa0109270-mRNA-1:cds;Parent=Msa0109270-mRNA-1
chr1_3 CDS 21213069 21213226 21213069 ID=Msa0109270-mRNA-1:cds;Parent=Msa0109270-mRNA-1
chr1_3 CDS 21213318 21213398 21213318 ID=Msa0109270-mRNA-1:cds;Parent=Msa0109270-mRNA-1
chr1_3 CDS 21214458 21214595 21214458 ID=Msa0109270-mRNA-1:cds;Parent=Msa0109270-mRNA-1
chr1_3 three_prime_UTR 21214596 21214801 21214596 ID=Msa0109270-mRNA-1:three_prime_utr;Parent=Msa0109270-mRNA-1
Gene Sequence

>Msa0109270

ATGGCAGAAATTTTGAATGAAGACCAAATTGTTGAGATCAAAGAAGCCTTTTGCTTGTTTGACAAAGATGGAGATGGTTGCATTACTGTGGAAGAACTTGCAACTGTAATTAGGTCATTGGATCAAAACCCAACAGAGGAAGAGCTCCAAGAAATGATAAACGAGGTTGATGCAGATGGAAATGGAACCATTGAATTTGTTGAGTTCTTGAACTTAATGGCCAAGAAAATGAAAGAAACTGATGCAGATGAAGATCTCAAAGAGGCTTTCAAGGTTTTTGATAAAGATCAAAATGGTTATATTTCCGCTAGTGAGTTGAGACACGTTATGATCAATTTGGGTGAAAAATTAACTGATGAAGAGGTGGATCAGATGATTAAAGAAGCAGATTTGGACGGTGATGGACAAGTGAACTTTGAAGAGTTTGTTAAGATGATGATGACCATTGGATGA
Protein sequence

>Msa0109270

MAEILNEDQIVEIKEAFCLFDKDGDGCITVEELATVIRSLDQNPTEEELQEMINEVDADGNGTIEFVEFLNLMAKKMKETDADEDLKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVDQMIKEADLDGDGQVNFEEFVKMMMTIG*