AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1263120


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1263120 MtrunA17_Chr4g0076051 96.742 399 13 0 1 399 1 399 0.0 801
Msa1263120 MtrunA17_Chr2g0278181 97.419 310 8 0 90 399 1 310 0.0 626
Msa1263120 MtrunA17_Chr2g0290131 69.786 374 109 3 25 396 29 400 0.0 530
Msa1263120 MtrunA17_Chr7g0234191 42.448 384 196 8 15 389 66 433 5.13e-97 296
Msa1263120 MtrunA17_Chr3g0101961 41.713 362 196 8 25 381 26 377 7.34e-87 268
Msa1263120 MtrunA17_Chr5g0447771 33.854 384 229 8 25 393 60 433 2.22e-65 214
Msa1263120 MtrunA17_Chr5g0444651 32.558 387 228 11 6 372 13 386 7.15e-59 197
Msa1263120 MtrunA17_Chr8g0347591 37.234 188 105 5 188 371 199 377 1.09e-31 124
Msa1263120 MtrunA17_Chr8g0338731 34.021 194 121 5 1 194 8 194 1.38e-25 103
Msa1263120 MtrunA17_Chr7g0275621 28.289 304 193 9 87 384 101 385 1.36e-24 104
Msa1263120 MtrunA17_Chr7g0261921 36.220 127 78 1 90 213 1 127 3.27e-19 84.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1263120 AT5G47530.1 53.281 381 162 7 14 388 16 386 3.51e-136 395
Msa1263120 AT4G17280.1 50.508 394 174 7 1 386 10 390 4.44e-131 382
Msa1263120 AT5G35735.1 46.766 402 191 8 5 395 9 398 8.21e-118 348
Msa1263120 AT3G25290.1 44.267 375 189 8 15 378 18 383 9.47e-105 315
Msa1263120 AT3G25290.2 44.267 375 189 8 15 378 18 383 9.47e-105 315
Msa1263120 AT4G12980.1 44.020 393 198 8 2 382 6 388 6.18e-100 303
Msa1263120 AT3G59070.1 41.161 379 197 11 3 367 6 372 6.00e-84 264
Msa1263120 AT2G04850.1 35.263 380 221 9 29 392 27 397 1.62e-68 222
Msa1263120 AT5G48750.1 43.404 235 123 5 17 247 26 254 1.33e-57 189
Msa1263120 AT3G07570.1 29.888 358 190 13 4 333 9 333 2.64e-30 120
Msa1263120 AT3G61750.2 33.871 186 115 4 167 352 100 277 1.90e-28 114
Msa1263120 AT3G61750.1 33.871 186 115 4 167 352 177 354 3.79e-28 114
Msa1263120 AT3G07390.1 33.679 193 117 6 9 199 36 219 2.11e-23 99.0
Msa1263120 AT3G07390.2 38.182 110 63 3 15 123 40 145 7.53e-16 75.1
Msa1263120 AT5G54830.1 26.768 198 128 7 153 342 635 823 3.13e-11 65.9

Find 120 sgRNAs with CRISPR-Local

Find 339 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAGACCCCTTTGTATATTT+TGG 0.071146 8_2:+66233767 Msa1263120:three_prime_UTR
TCCATTAGTTATCCTGTTTC+TGG 0.137764 8_2:+66232320 Msa1263120:CDS
CATGCTTACATTGGTATTAT+TGG 0.155934 8_2:+66233541 Msa1263120:CDS
CTATACTTACTATGGCTTAA+AGG 0.171632 8_2:-66233687 None:intergenic
GAAGTCTTGGATCTTGTTTC+TGG 0.179617 8_2:+66232503 Msa1263120:CDS
GCCTACATAGTTGGATTATC+TGG 0.214774 8_2:+66233250 Msa1263120:CDS
CATTGGTATTATTGGTGCTT+TGG 0.218211 8_2:+66233549 Msa1263120:CDS
CCAAGACTTCCTTAGAGTTT+TGG 0.257990 8_2:-66232490 None:intergenic
ATCATTATTGTAACGTTCTC+TGG 0.273084 8_2:+66233970 Msa1263120:three_prime_UTR
GTTTGTAATGCTAATGCTTA+TGG 0.273236 8_2:-66233458 None:intergenic
ATGTTTGAAGTATATGCTTT+TGG 0.274313 8_2:-66232266 None:intergenic
ATTGGTATTATTGGTGCTTT+GGG 0.280623 8_2:+66233550 Msa1263120:CDS
CATCATTCCTATACTTACTA+TGG 0.303608 8_2:-66233695 None:intergenic
ATTCTTCAATGGGTTGCTTT+TGG 0.313612 8_2:-66231885 None:intergenic
TCCAAATGGAACAACCTCTT+TGG 0.315874 8_2:+66232397 Msa1263120:CDS
AAGACTTCAGATGGTGTTAA+TGG 0.319234 8_2:+66233640 Msa1263120:CDS
CTGGAATAACTGCAACAAAT+AGG 0.325023 8_2:+66232150 Msa1263120:CDS
TATACTTACTATGGCTTAAA+GGG 0.330924 8_2:-66233686 None:intergenic
CTTTGTTGTTTGAGAATGTT+TGG 0.332596 8_2:-66232031 None:intergenic
GCCAATCCCACTTGCAGCTT+GGG 0.336349 8_2:-66232531 None:intergenic
ATAGTTGGATTATCTGGTTT+TGG 0.338557 8_2:+66233256 Msa1263120:CDS
CTCAACTTATGGTCTTTGTT+TGG 0.344950 8_2:-66233394 None:intergenic
TCCAGTAAAATCTCAACTTA+TGG 0.345086 8_2:-66233405 None:intergenic
CAACAAATAGGTGGGTTGCT+TGG 0.346817 8_2:+66232162 Msa1263120:CDS
AAGGGTGCTGCTTGGATTGA+TGG 0.347392 8_2:-66232186 None:intergenic
ACCAAAGAGGTTGTTCCATT+TGG 0.348727 8_2:-66232398 None:intergenic
GCTTGTGCTCCGATCATGGC+TGG 0.356922 8_2:-66232212 None:intergenic
TAGGGGATCGTTACAAGAAC+TGG 0.360418 8_2:+66233515 Msa1263120:CDS
AACAAATAGGTGGGTTGCTT+GGG 0.381341 8_2:+66232163 Msa1263120:CDS
GCTTTATGTAAATTCTTCAA+TGG 0.381557 8_2:-66231896 None:intergenic
CAACACCTTTCTTCGGTTTG+TGG 0.386786 8_2:+66233996 Msa1263120:three_prime_UTR
TAATGATATTTGAAACTTCA+AGG 0.391491 8_2:-66233954 None:intergenic
CTGGGAGCAACACCTTTCTT+CGG 0.393940 8_2:+66233989 Msa1263120:three_prime_UTR
CAAGTCTCTGCCTACATAGT+TGG 0.397780 8_2:+66233241 Msa1263120:CDS
AATATCTACCACCACGTTGT+AGG 0.399297 8_2:+66233427 Msa1263120:CDS
AATTCTAAATGCAATAAGTT+GGG 0.400187 8_2:+66233126 Msa1263120:CDS
TTTCAAAGGGTTTGAAGCAT+TGG 0.401125 8_2:+66233483 Msa1263120:CDS
TGGTTCATGTATGGCAAGAT+GGG 0.403428 8_2:+66232417 Msa1263120:CDS
TTGGTTCATGTATGGCAAGA+TGG 0.409548 8_2:+66232416 Msa1263120:CDS
ATCTTCTCACCAAAACTCTA+AGG 0.410472 8_2:+66232481 Msa1263120:CDS
TTCAAAGGGTTTGAAGCATT+GGG 0.410583 8_2:+66233484 Msa1263120:CDS
CAACCTCTTTGGTTCATGTA+TGG 0.419802 8_2:+66232408 Msa1263120:CDS
CTTTATGTAAATTCTTCAAT+GGG 0.423723 8_2:-66231895 None:intergenic
TTTGGGCTTCCACTGGCTTG+TGG 0.428919 8_2:-66232248 None:intergenic
TGCTATTGTTCTTGTAACCT+TGG 0.433426 8_2:+66233339 Msa1263120:CDS
ACCAGAAACAGGATAACTAA+TGG 0.433626 8_2:-66232321 None:intergenic
CCAAAACTCTAAGGAAGTCT+TGG 0.434557 8_2:+66232490 Msa1263120:CDS
CAAAGCTTGTGCTCCGATCA+TGG 0.437700 8_2:-66232216 None:intergenic
GAATTCTAAATGCAATAAGT+TGG 0.439356 8_2:+66233125 Msa1263120:CDS
TGGGGAATCTTGATGCCAAC+AGG 0.450699 8_2:+66233145 Msa1263120:CDS
TCCCAAGCTGCAAGTGGGAT+TGG 0.452511 8_2:+66232530 Msa1263120:CDS
GCTGGGTCAAGGGTGCTGCT+TGG 0.458703 8_2:-66232194 None:intergenic
TGGTATTATTGGTGCTTTGG+GGG 0.460113 8_2:+66233552 Msa1263120:CDS
GTGGCAGACAAACCAGAAAC+AGG 0.463187 8_2:-66232332 None:intergenic
GCTACTTTGACCCTTCCAAA+TGG 0.468426 8_2:+66232383 Msa1263120:CDS
CATGATCGGAGCACAAGCTT+TGG 0.470343 8_2:+66232217 Msa1263120:CDS
CTTTAAGCCATAGTAAGTAT+AGG 0.474144 8_2:+66233688 Msa1263120:exon
ATATCTACCACCACGTTGTA+GGG 0.487362 8_2:+66233428 Msa1263120:CDS
TCCGATCATGGCTGGGTCAA+GGG 0.488469 8_2:-66232204 None:intergenic
CTCCGATCATGGCTGGGTCA+AGG 0.489759 8_2:-66232205 None:intergenic
GGTATTATTGGTGCTTTGGG+GGG 0.491041 8_2:+66233553 Msa1263120:CDS
TCAAATCCGCAGACCCTGCT+TGG 0.493088 8_2:+66233197 Msa1263120:CDS
ACCCTTGACCCAGCCATGAT+CGG 0.495736 8_2:+66232203 Msa1263120:CDS
AAGAGGTTGTTCCATTTGGA+AGG 0.497441 8_2:-66232394 None:intergenic
GATCGGAGCACAAGCTTTGG+TGG 0.497818 8_2:+66232220 Msa1263120:CDS
GAGTACCCAAAATATACAAA+GGG 0.515639 8_2:-66233773 None:intergenic
TTGGTATTATTGGTGCTTTG+GGG 0.518620 8_2:+66233551 Msa1263120:CDS
ATGTGAAGATAGAACCAAGC+AGG 0.523540 8_2:-66233211 None:intergenic
TCATTATTGTAACGTTCTCT+GGG 0.531140 8_2:+66233971 Msa1263120:three_prime_UTR
TTTGGTACTGGTCTCAAACT+CGG 0.532870 8_2:+66233274 Msa1263120:CDS
TTTGGAAGCTTACACGTGGA+TGG 0.533911 8_2:+66233588 Msa1263120:CDS
AGTTAACCTCGTACCTCCAC+TGG 0.539955 8_2:+66232081 Msa1263120:CDS
TCCACGTGTAAGCTTCCAAA+AGG 0.545026 8_2:-66233585 None:intergenic
CTTGTGCTCCGATCATGGCT+GGG 0.548227 8_2:-66232211 None:intergenic
GAATAACTGCAACAAATAGG+TGG 0.552346 8_2:+66232153 Msa1263120:CDS
AGTAATAGCAAGGTATATGA+AGG 0.552758 8_2:+66233171 Msa1263120:CDS
CAACGTAAGCCTCAACATGA+TGG 0.558574 8_2:-66231946 None:intergenic
CTTGCTATTACTGCTCCTGT+TGG 0.560569 8_2:-66233160 None:intergenic
GATTCATGGCTATGTTCTTG+AGG 0.562296 8_2:-66232461 None:intergenic
GTTAATGGAGCAAATAGCTA+TGG 0.568663 8_2:+66233655 Msa1263120:CDS
AACTGGAAGCATGCTTACAT+TGG 0.570819 8_2:+66233532 Msa1263120:CDS
GGTTCATGTATGGCAAGATG+GGG 0.572736 8_2:+66232418 Msa1263120:CDS
ACCAGATAATCCAACTATGT+AGG 0.573850 8_2:-66233251 None:intergenic
ATTCTAAATGCAATAAGTTG+GGG 0.575819 8_2:+66233127 Msa1263120:CDS
AGAGTACCCAAAATATACAA+AGG 0.577577 8_2:-66233774 None:intergenic
AGAGGTTGTTCCATTTGGAA+GGG 0.580852 8_2:-66232393 None:intergenic
GCAGAGAACAAGACTTCAGA+TGG 0.581792 8_2:+66233631 Msa1263120:CDS
CAAACTCGGTAGTGATTCAG+AGG 0.584270 8_2:+66233288 Msa1263120:CDS
AATCCCACTTGCAGCTTGGG+AGG 0.585410 8_2:-66232528 None:intergenic
TACATAAAGCAAAGAGAAGG+AGG 0.587618 8_2:+66231909 Msa1263120:five_prime_UTR
CATCATGTTGAGGCTTACGT+TGG 0.594673 8_2:+66231947 Msa1263120:exon
TTAGTTTAATACAATATGAG+AGG 0.595901 8_2:-66231779 None:intergenic
GGTACCTCCCAAGCTGCAAG+TGG 0.604136 8_2:+66232524 Msa1263120:CDS
GTGGCTATTCCACAAGCCAG+TGG 0.609291 8_2:+66232239 Msa1263120:CDS
AATAACTGCAACAAATAGGT+GGG 0.611835 8_2:+66232154 Msa1263120:CDS
ATTTACATAAAGCAAAGAGA+AGG 0.614377 8_2:+66231906 Msa1263120:five_prime_UTR
TTGTTTCATCGTATGACCAG+TGG 0.615698 8_2:-66232097 None:intergenic
ACAAGCACACGGTTGCAAGA+AGG 0.618408 8_2:+66232296 Msa1263120:CDS
GACATAGCATACATACACAC+TGG 0.619673 8_2:+66232131 Msa1263120:CDS
TAGTTTAATACAATATGAGA+GGG 0.623159 8_2:-66231778 None:intergenic
AAACACTTGAAGAGTTGCCA+AGG 0.625483 8_2:-66233356 None:intergenic
TTGCCATACATGAACCAAAG+AGG 0.632447 8_2:-66232411 None:intergenic
CAACAGGAGCAGTAATAGCA+AGG 0.639419 8_2:+66233161 Msa1263120:CDS
ATACAATATGAGAGGGACAG+AGG 0.641017 8_2:-66231771 None:intergenic
TTTCATCGTATGACCAGTGG+AGG 0.641448 8_2:-66232094 None:intergenic
TGTGAAGATAGAACCAAGCA+GGG 0.656540 8_2:-66233210 None:intergenic
ATAGAACCAAGCAGGGTCTG+CGG 0.662307 8_2:-66233203 None:intergenic
AACCTCATTATTCTGATACG+TGG 0.667735 8_2:-66232351 None:intergenic
GTACCTCCCAAGCTGCAAGT+GGG 0.668450 8_2:+66232525 Msa1263120:CDS
TGGAGGTACGAGGTTAACTG+TGG 0.671548 8_2:-66232077 None:intergenic
TGGTCATACGATGAAACAAG+TGG 0.675142 8_2:+66232101 Msa1263120:CDS
TGCCACGTATCAGAATAATG+AGG 0.677711 8_2:+66232349 Msa1263120:CDS
ACATTGTAGACACAAGCACA+CGG 0.692248 8_2:+66232285 Msa1263120:CDS
ACATGATTGAGTTTGAGCTG+AGG 0.702084 8_2:-66232003 None:intergenic
TATGCTACTCAAAACACACA+AGG 0.702224 8_2:-66231970 None:intergenic
GTATGACCAGTGGAGGTACG+AGG 0.705546 8_2:-66232087 None:intergenic
AAACTCGGTAGTGATTCAGA+GGG 0.706199 8_2:+66233289 Msa1263120:CDS
AGTACCCAAAATATACAAAG+GGG 0.710749 8_2:-66233772 None:intergenic
TAACATACCCTACAACGTGG+TGG 0.753877 8_2:-66233435 None:intergenic
TGGTAACATACCCTACAACG+TGG 0.797593 8_2:-66233438 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTTAAATAAAGTTCT+AGG - chr8_2:66232846-66232865 None:intergenic 10.0%
!!! AATTTTTTAAATAAAGTTCT+AGG - chr8_2:66232846-66232865 None:intergenic 10.0%
!! AAATATTTATAATGATCCAA+CGG - chr8_2:66232641-66232660 None:intergenic 15.0%
!! AAATATTTATAATGATCCAA+CGG - chr8_2:66232641-66232660 None:intergenic 15.0%
!! TAGTTTAATACAATATGAGA+GGG - chr8_2:66231781-66231800 None:intergenic 20.0%
!! TTAGTTTAATACAATATGAG+AGG - chr8_2:66231782-66231801 None:intergenic 20.0%
!!! TTTTTGAGAACAAATTCAAA+GGG - chr8_2:66231852-66231871 None:intergenic 20.0%
!! CTTTATGTAAATTCTTCAAT+GGG - chr8_2:66231898-66231917 None:intergenic 20.0%
!! CACGACATAATTTATAAAAT+TGG - chr8_2:66233022-66233041 None:intergenic 20.0%
!! GTGTTAGTACTTTATAATTA+GGG + chr8_2:66233039-66233058 Msa1263120:intron 20.0%
!! AATTCTAAATGCAATAAGTT+GGG + chr8_2:66233126-66233145 Msa1263120:CDS 20.0%
!!! TAATGATATTTGAAACTTCA+AGG - chr8_2:66233957-66233976 None:intergenic 20.0%
!! TAGTTTAATACAATATGAGA+GGG - chr8_2:66231781-66231800 None:intergenic 20.0%
!! TTAGTTTAATACAATATGAG+AGG - chr8_2:66231782-66231801 None:intergenic 20.0%
!!! TTTTTGAGAACAAATTCAAA+GGG - chr8_2:66231852-66231871 None:intergenic 20.0%
!! CTTTATGTAAATTCTTCAAT+GGG - chr8_2:66231898-66231917 None:intergenic 20.0%
!! CACGACATAATTTATAAAAT+TGG - chr8_2:66233022-66233041 None:intergenic 20.0%
!! GTGTTAGTACTTTATAATTA+GGG + chr8_2:66233039-66233058 Msa1263120:intron 20.0%
!! AATTCTAAATGCAATAAGTT+GGG + chr8_2:66233126-66233145 Msa1263120:CDS 20.0%
!!! TAATGATATTTGAAACTTCA+AGG - chr8_2:66233957-66233976 None:intergenic 20.0%
!!! GTTTTTGAGAACAAATTCAA+AGG - chr8_2:66231853-66231872 None:intergenic 25.0%
! TTCTCAAAAACCCATTAATT+TGG + chr8_2:66231862-66231881 Msa1263120:five_prime_UTR 25.0%
! GCTTTATGTAAATTCTTCAA+TGG - chr8_2:66231899-66231918 None:intergenic 25.0%
! ATTTACATAAAGCAAAGAGA+AGG + chr8_2:66231906-66231925 Msa1263120:five_prime_UTR 25.0%
!!! TGTTTGAAGTATATGCTTTT+GGG - chr8_2:66232268-66232287 None:intergenic 25.0%
!!! ATGTTTGAAGTATATGCTTT+TGG - chr8_2:66232269-66232288 None:intergenic 25.0%
!! TGTAAGTTCATACTGTTTTA+AGG + chr8_2:66232574-66232593 Msa1263120:intron 25.0%
! ACTCTCTATTATCAAGAATT+TGG - chr8_2:66232766-66232785 None:intergenic 25.0%
! AACAGGATAATACAATCATA+TGG - chr8_2:66232894-66232913 None:intergenic 25.0%
! TATGATTGTATTATCCTGTT+TGG + chr8_2:66232894-66232913 Msa1263120:intron 25.0%
! CGTGTTAGTACTTTATAATT+AGG + chr8_2:66233038-66233057 Msa1263120:intron 25.0%
!! ATTCTTAATTTTCAGACACA+TGG + chr8_2:66233103-66233122 Msa1263120:intron 25.0%
! GAATTCTAAATGCAATAAGT+TGG + chr8_2:66233125-66233144 Msa1263120:CDS 25.0%
! ATTCTAAATGCAATAAGTTG+GGG + chr8_2:66233127-66233146 Msa1263120:CDS 25.0%
! TATACTTACTATGGCTTAAA+GGG - chr8_2:66233689-66233708 None:intergenic 25.0%
!!! GTTTTTGAGAACAAATTCAA+AGG - chr8_2:66231853-66231872 None:intergenic 25.0%
! TTCTCAAAAACCCATTAATT+TGG + chr8_2:66231862-66231881 Msa1263120:five_prime_UTR 25.0%
! GCTTTATGTAAATTCTTCAA+TGG - chr8_2:66231899-66231918 None:intergenic 25.0%
! ATTTACATAAAGCAAAGAGA+AGG + chr8_2:66231906-66231925 Msa1263120:five_prime_UTR 25.0%
!!! TGTTTGAAGTATATGCTTTT+GGG - chr8_2:66232268-66232287 None:intergenic 25.0%
!!! ATGTTTGAAGTATATGCTTT+TGG - chr8_2:66232269-66232288 None:intergenic 25.0%
!! TGTAAGTTCATACTGTTTTA+AGG + chr8_2:66232574-66232593 Msa1263120:intron 25.0%
! ACTCTCTATTATCAAGAATT+TGG - chr8_2:66232766-66232785 None:intergenic 25.0%
! AACAGGATAATACAATCATA+TGG - chr8_2:66232894-66232913 None:intergenic 25.0%
! TATGATTGTATTATCCTGTT+TGG + chr8_2:66232894-66232913 Msa1263120:intron 25.0%
! CGTGTTAGTACTTTATAATT+AGG + chr8_2:66233038-66233057 Msa1263120:intron 25.0%
!! ATTCTTAATTTTCAGACACA+TGG + chr8_2:66233103-66233122 Msa1263120:intron 25.0%
! GAATTCTAAATGCAATAAGT+TGG + chr8_2:66233125-66233144 Msa1263120:CDS 25.0%
! ATTCTAAATGCAATAAGTTG+GGG + chr8_2:66233127-66233146 Msa1263120:CDS 25.0%
! TATACTTACTATGGCTTAAA+GGG - chr8_2:66233689-66233708 None:intergenic 25.0%
!! TTGCTTTTGGCCAAATTAAT+GGG - chr8_2:66231875-66231894 None:intergenic 30.0%
!! CTTTGTTGTTTGAGAATGTT+TGG - chr8_2:66232034-66232053 None:intergenic 30.0%
AATAACTGCAACAAATAGGT+GGG + chr8_2:66232154-66232173 Msa1263120:CDS 30.0%
! GAATTTTTACACAAAACCGT+TGG + chr8_2:66232622-66232641 Msa1263120:intron 30.0%
!! TCATTATGTTGTTTCGATTG+TGG + chr8_2:66232787-66232806 Msa1263120:intron 30.0%
TGGTCATAATGTAATTGCAT+AGG + chr8_2:66232807-66232826 Msa1263120:intron 30.0%
!! AAAGTTCTAGGATTGTGATA+TGG - chr8_2:66232834-66232853 None:intergenic 30.0%
! ACACCTCAAATTTAAAGTGT+CGG - chr8_2:66232933-66232952 None:intergenic 30.0%
AGTAATAGCAAGGTATATGA+AGG + chr8_2:66233171-66233190 Msa1263120:CDS 30.0%
!! ATAGTTGGATTATCTGGTTT+TGG + chr8_2:66233256-66233275 Msa1263120:CDS 30.0%
!!! AAGTGTTTGCTCTATTTTTG+AGG + chr8_2:66233371-66233390 Msa1263120:CDS 30.0%
!! ACCATAAGTTGAGATTTTAC+TGG + chr8_2:66233404-66233423 Msa1263120:CDS 30.0%
TCCAGTAAAATCTCAACTTA+TGG - chr8_2:66233408-66233427 None:intergenic 30.0%
GTTTGTAATGCTAATGCTTA+TGG - chr8_2:66233461-66233480 None:intergenic 30.0%
! AGCATTACAAACGTTTTCAA+AGG + chr8_2:66233469-66233488 Msa1263120:CDS 30.0%
! GCATTACAAACGTTTTCAAA+GGG + chr8_2:66233470-66233489 Msa1263120:CDS 30.0%
CATGCTTACATTGGTATTAT+TGG + chr8_2:66233541-66233560 Msa1263120:CDS 30.0%
! ATTGGTATTATTGGTGCTTT+GGG + chr8_2:66233550-66233569 Msa1263120:CDS 30.0%
CTATACTTACTATGGCTTAA+AGG - chr8_2:66233690-66233709 None:intergenic 30.0%
CTTTAAGCCATAGTAAGTAT+AGG + chr8_2:66233688-66233707 Msa1263120:exon 30.0%
CATCATTCCTATACTTACTA+TGG - chr8_2:66233698-66233717 None:intergenic 30.0%
! TTAGACCCCTTTGTATATTT+TGG + chr8_2:66233767-66233786 Msa1263120:three_prime_UTR 30.0%
! TAGACCCCTTTGTATATTTT+GGG + chr8_2:66233768-66233787 Msa1263120:three_prime_UTR 30.0%
AGTACCCAAAATATACAAAG+GGG - chr8_2:66233775-66233794 None:intergenic 30.0%
GAGTACCCAAAATATACAAA+GGG - chr8_2:66233776-66233795 None:intergenic 30.0%
! AGAGTACCCAAAATATACAA+AGG - chr8_2:66233777-66233796 None:intergenic 30.0%
!!! AGTCTTAGTTTTGACTTTTG+AGG + chr8_2:66233812-66233831 Msa1263120:three_prime_UTR 30.0%
!!! TTTTGAGGTAATTCTTTCAC+AGG + chr8_2:66233827-66233846 Msa1263120:three_prime_UTR 30.0%
!! TTCACAGGATACTTACTTTT+AGG + chr8_2:66233842-66233861 Msa1263120:three_prime_UTR 30.0%
!! TCACAGGATACTTACTTTTA+GGG + chr8_2:66233843-66233862 Msa1263120:three_prime_UTR 30.0%
ATCATTATTGTAACGTTCTC+TGG + chr8_2:66233970-66233989 Msa1263120:three_prime_UTR 30.0%
TCATTATTGTAACGTTCTCT+GGG + chr8_2:66233971-66233990 Msa1263120:three_prime_UTR 30.0%
!! TTGCTTTTGGCCAAATTAAT+GGG - chr8_2:66231875-66231894 None:intergenic 30.0%
!! CTTTGTTGTTTGAGAATGTT+TGG - chr8_2:66232034-66232053 None:intergenic 30.0%
AATAACTGCAACAAATAGGT+GGG + chr8_2:66232154-66232173 Msa1263120:CDS 30.0%
! GAATTTTTACACAAAACCGT+TGG + chr8_2:66232622-66232641 Msa1263120:intron 30.0%
!! TCATTATGTTGTTTCGATTG+TGG + chr8_2:66232787-66232806 Msa1263120:intron 30.0%
TGGTCATAATGTAATTGCAT+AGG + chr8_2:66232807-66232826 Msa1263120:intron 30.0%
!! AAAGTTCTAGGATTGTGATA+TGG - chr8_2:66232834-66232853 None:intergenic 30.0%
! ACACCTCAAATTTAAAGTGT+CGG - chr8_2:66232933-66232952 None:intergenic 30.0%
AGTAATAGCAAGGTATATGA+AGG + chr8_2:66233171-66233190 Msa1263120:CDS 30.0%
!! ATAGTTGGATTATCTGGTTT+TGG + chr8_2:66233256-66233275 Msa1263120:CDS 30.0%
!!! AAGTGTTTGCTCTATTTTTG+AGG + chr8_2:66233371-66233390 Msa1263120:CDS 30.0%
!! ACCATAAGTTGAGATTTTAC+TGG + chr8_2:66233404-66233423 Msa1263120:CDS 30.0%
TCCAGTAAAATCTCAACTTA+TGG - chr8_2:66233408-66233427 None:intergenic 30.0%
GTTTGTAATGCTAATGCTTA+TGG - chr8_2:66233461-66233480 None:intergenic 30.0%
! AGCATTACAAACGTTTTCAA+AGG + chr8_2:66233469-66233488 Msa1263120:CDS 30.0%
! GCATTACAAACGTTTTCAAA+GGG + chr8_2:66233470-66233489 Msa1263120:CDS 30.0%
CATGCTTACATTGGTATTAT+TGG + chr8_2:66233541-66233560 Msa1263120:CDS 30.0%
! ATTGGTATTATTGGTGCTTT+GGG + chr8_2:66233550-66233569 Msa1263120:CDS 30.0%
CTATACTTACTATGGCTTAA+AGG - chr8_2:66233690-66233709 None:intergenic 30.0%
CTTTAAGCCATAGTAAGTAT+AGG + chr8_2:66233688-66233707 Msa1263120:exon 30.0%
CATCATTCCTATACTTACTA+TGG - chr8_2:66233698-66233717 None:intergenic 30.0%
! TTAGACCCCTTTGTATATTT+TGG + chr8_2:66233767-66233786 Msa1263120:three_prime_UTR 30.0%
! TAGACCCCTTTGTATATTTT+GGG + chr8_2:66233768-66233787 Msa1263120:three_prime_UTR 30.0%
AGTACCCAAAATATACAAAG+GGG - chr8_2:66233775-66233794 None:intergenic 30.0%
GAGTACCCAAAATATACAAA+GGG - chr8_2:66233776-66233795 None:intergenic 30.0%
! AGAGTACCCAAAATATACAA+AGG - chr8_2:66233777-66233796 None:intergenic 30.0%
!!! AGTCTTAGTTTTGACTTTTG+AGG + chr8_2:66233812-66233831 Msa1263120:three_prime_UTR 30.0%
!!! TTTTGAGGTAATTCTTTCAC+AGG + chr8_2:66233827-66233846 Msa1263120:three_prime_UTR 30.0%
!! TTCACAGGATACTTACTTTT+AGG + chr8_2:66233842-66233861 Msa1263120:three_prime_UTR 30.0%
!! TCACAGGATACTTACTTTTA+GGG + chr8_2:66233843-66233862 Msa1263120:three_prime_UTR 30.0%
ATCATTATTGTAACGTTCTC+TGG + chr8_2:66233970-66233989 Msa1263120:three_prime_UTR 30.0%
TCATTATTGTAACGTTCTCT+GGG + chr8_2:66233971-66233990 Msa1263120:three_prime_UTR 30.0%
!!! GTTGCTTTTGGCCAAATTAA+TGG - chr8_2:66231876-66231895 None:intergenic 35.0%
!!! ATTCTTCAATGGGTTGCTTT+TGG - chr8_2:66231888-66231907 None:intergenic 35.0%
TACATAAAGCAAAGAGAAGG+AGG + chr8_2:66231909-66231928 Msa1263120:five_prime_UTR 35.0%
!! ATTTTAGCACCATCATGTTG+AGG + chr8_2:66231937-66231956 Msa1263120:exon 35.0%
TATGCTACTCAAAACACACA+AGG - chr8_2:66231973-66231992 None:intergenic 35.0%
CTGGAATAACTGCAACAAAT+AGG + chr8_2:66232150-66232169 Msa1263120:CDS 35.0%
GAATAACTGCAACAAATAGG+TGG + chr8_2:66232153-66232172 Msa1263120:CDS 35.0%
TCCATTAGTTATCCTGTTTC+TGG + chr8_2:66232320-66232339 Msa1263120:CDS 35.0%
ACCAGAAACAGGATAACTAA+TGG - chr8_2:66232324-66232343 None:intergenic 35.0%
AACCTCATTATTCTGATACG+TGG - chr8_2:66232354-66232373 None:intergenic 35.0%
!! AGTTTTGGTGAGAAGATTCA+TGG - chr8_2:66232478-66232497 None:intergenic 35.0%
ATCTTCTCACCAAAACTCTA+AGG + chr8_2:66232481-66232500 Msa1263120:CDS 35.0%
ACACCGACACTTTAAATTTG+AGG + chr8_2:66232927-66232946 Msa1263120:intron 35.0%
ACCAGATAATCCAACTATGT+AGG - chr8_2:66233254-66233273 None:intergenic 35.0%
TGCTATTGTTCTTGTAACCT+TGG + chr8_2:66233339-66233358 Msa1263120:CDS 35.0%
CTCAACTTATGGTCTTTGTT+TGG - chr8_2:66233397-66233416 None:intergenic 35.0%
! TTTCAAAGGGTTTGAAGCAT+TGG + chr8_2:66233483-66233502 Msa1263120:CDS 35.0%
! TTCAAAGGGTTTGAAGCATT+GGG + chr8_2:66233484-66233503 Msa1263120:CDS 35.0%
!!! AAGCATTGGGAGATTTTGTA+GGG + chr8_2:66233497-66233516 Msa1263120:CDS 35.0%
! CATTGGTATTATTGGTGCTT+TGG + chr8_2:66233549-66233568 Msa1263120:CDS 35.0%
! TTGGTATTATTGGTGCTTTG+GGG + chr8_2:66233551-66233570 Msa1263120:CDS 35.0%
! AAGACTTCAGATGGTGTTAA+TGG + chr8_2:66233640-66233659 Msa1263120:CDS 35.0%
GTTAATGGAGCAAATAGCTA+TGG + chr8_2:66233655-66233674 Msa1263120:CDS 35.0%
!! CACAGGATACTTACTTTTAG+GGG + chr8_2:66233844-66233863 Msa1263120:three_prime_UTR 35.0%
TAATACAATATGAGAGGGAC+AGG - chr8_2:66231776-66231795 None:intergenic 35.0%
!!! GTTGCTTTTGGCCAAATTAA+TGG - chr8_2:66231876-66231895 None:intergenic 35.0%
!!! ATTCTTCAATGGGTTGCTTT+TGG - chr8_2:66231888-66231907 None:intergenic 35.0%
TACATAAAGCAAAGAGAAGG+AGG + chr8_2:66231909-66231928 Msa1263120:five_prime_UTR 35.0%
!! ATTTTAGCACCATCATGTTG+AGG + chr8_2:66231937-66231956 Msa1263120:exon 35.0%
TATGCTACTCAAAACACACA+AGG - chr8_2:66231973-66231992 None:intergenic 35.0%
CTGGAATAACTGCAACAAAT+AGG + chr8_2:66232150-66232169 Msa1263120:CDS 35.0%
GAATAACTGCAACAAATAGG+TGG + chr8_2:66232153-66232172 Msa1263120:CDS 35.0%
TCCATTAGTTATCCTGTTTC+TGG + chr8_2:66232320-66232339 Msa1263120:CDS 35.0%
ACCAGAAACAGGATAACTAA+TGG - chr8_2:66232324-66232343 None:intergenic 35.0%
AACCTCATTATTCTGATACG+TGG - chr8_2:66232354-66232373 None:intergenic 35.0%
!! AGTTTTGGTGAGAAGATTCA+TGG - chr8_2:66232478-66232497 None:intergenic 35.0%
ATCTTCTCACCAAAACTCTA+AGG + chr8_2:66232481-66232500 Msa1263120:CDS 35.0%
ACACCGACACTTTAAATTTG+AGG + chr8_2:66232927-66232946 Msa1263120:intron 35.0%
ACCAGATAATCCAACTATGT+AGG - chr8_2:66233254-66233273 None:intergenic 35.0%
TGCTATTGTTCTTGTAACCT+TGG + chr8_2:66233339-66233358 Msa1263120:CDS 35.0%
CTCAACTTATGGTCTTTGTT+TGG - chr8_2:66233397-66233416 None:intergenic 35.0%
! TTTCAAAGGGTTTGAAGCAT+TGG + chr8_2:66233483-66233502 Msa1263120:CDS 35.0%
! TTCAAAGGGTTTGAAGCATT+GGG + chr8_2:66233484-66233503 Msa1263120:CDS 35.0%
!!! AAGCATTGGGAGATTTTGTA+GGG + chr8_2:66233497-66233516 Msa1263120:CDS 35.0%
! CATTGGTATTATTGGTGCTT+TGG + chr8_2:66233549-66233568 Msa1263120:CDS 35.0%
! TTGGTATTATTGGTGCTTTG+GGG + chr8_2:66233551-66233570 Msa1263120:CDS 35.0%
! AAGACTTCAGATGGTGTTAA+TGG + chr8_2:66233640-66233659 Msa1263120:CDS 35.0%
GTTAATGGAGCAAATAGCTA+TGG + chr8_2:66233655-66233674 Msa1263120:CDS 35.0%
!! CACAGGATACTTACTTTTAG+GGG + chr8_2:66233844-66233863 Msa1263120:three_prime_UTR 35.0%
ACATGATTGAGTTTGAGCTG+AGG - chr8_2:66232006-66232025 None:intergenic 40.0%
TTGTTTCATCGTATGACCAG+TGG - chr8_2:66232100-66232119 None:intergenic 40.0%
TGGTCATACGATGAAACAAG+TGG + chr8_2:66232101-66232120 Msa1263120:CDS 40.0%
GACATAGCATACATACACAC+TGG + chr8_2:66232131-66232150 Msa1263120:CDS 40.0%
!! AACAAATAGGTGGGTTGCTT+GGG + chr8_2:66232163-66232182 Msa1263120:CDS 40.0%
ACATTGTAGACACAAGCACA+CGG + chr8_2:66232285-66232304 Msa1263120:CDS 40.0%
TGCCACGTATCAGAATAATG+AGG + chr8_2:66232349-66232368 Msa1263120:CDS 40.0%
AGAGGTTGTTCCATTTGGAA+GGG - chr8_2:66232396-66232415 None:intergenic 40.0%
AAGAGGTTGTTCCATTTGGA+AGG - chr8_2:66232397-66232416 None:intergenic 40.0%
TCCAAATGGAACAACCTCTT+TGG + chr8_2:66232397-66232416 Msa1263120:CDS 40.0%
ACCAAAGAGGTTGTTCCATT+TGG - chr8_2:66232401-66232420 None:intergenic 40.0%
! CAACCTCTTTGGTTCATGTA+TGG + chr8_2:66232408-66232427 Msa1263120:CDS 40.0%
TTGCCATACATGAACCAAAG+AGG - chr8_2:66232414-66232433 None:intergenic 40.0%
TTGGTTCATGTATGGCAAGA+TGG + chr8_2:66232416-66232435 Msa1263120:CDS 40.0%
TGGTTCATGTATGGCAAGAT+GGG + chr8_2:66232417-66232436 Msa1263120:CDS 40.0%
GATTCATGGCTATGTTCTTG+AGG - chr8_2:66232464-66232483 None:intergenic 40.0%
! CCAAGACTTCCTTAGAGTTT+TGG - chr8_2:66232493-66232512 None:intergenic 40.0%
! CCAAAACTCTAAGGAAGTCT+TGG + chr8_2:66232490-66232509 Msa1263120:CDS 40.0%
! GAAGTCTTGGATCTTGTTTC+TGG + chr8_2:66232503-66232522 Msa1263120:CDS 40.0%
!! CACATATGTAAGTACCGAGT+TGG - chr8_2:66232995-66233014 None:intergenic 40.0%
CAACTCGGTACTTACATATG+TGG + chr8_2:66232993-66233012 Msa1263120:intron 40.0%
! AGGGACGATTCTTGTTTGAT+TGG + chr8_2:66233058-66233077 Msa1263120:intron 40.0%
TGTGAAGATAGAACCAAGCA+GGG - chr8_2:66233213-66233232 None:intergenic 40.0%
ATGTGAAGATAGAACCAAGC+AGG - chr8_2:66233214-66233233 None:intergenic 40.0%
GCCTACATAGTTGGATTATC+TGG + chr8_2:66233250-66233269 Msa1263120:CDS 40.0%
!!! GGATTATCTGGTTTTGGTAC+TGG + chr8_2:66233262-66233281 Msa1263120:CDS 40.0%
!! TTTGGTACTGGTCTCAAACT+CGG + chr8_2:66233274-66233293 Msa1263120:CDS 40.0%
AAACTCGGTAGTGATTCAGA+GGG + chr8_2:66233289-66233308 Msa1263120:CDS 40.0%
AAACACTTGAAGAGTTGCCA+AGG - chr8_2:66233359-66233378 None:intergenic 40.0%
AATATCTACCACCACGTTGT+AGG + chr8_2:66233427-66233446 Msa1263120:CDS 40.0%
ATATCTACCACCACGTTGTA+GGG + chr8_2:66233428-66233447 Msa1263120:CDS 40.0%
!!! GAAGCATTGGGAGATTTTGT+AGG + chr8_2:66233496-66233515 Msa1263120:CDS 40.0%
!! AGCATTGGGAGATTTTGTAG+GGG + chr8_2:66233498-66233517 Msa1263120:CDS 40.0%
! AACTGGAAGCATGCTTACAT+TGG + chr8_2:66233532-66233551 Msa1263120:CDS 40.0%
! TGGTATTATTGGTGCTTTGG+GGG + chr8_2:66233552-66233571 Msa1263120:CDS 40.0%
ACATGATTGAGTTTGAGCTG+AGG - chr8_2:66232006-66232025 None:intergenic 40.0%
TTGTTTCATCGTATGACCAG+TGG - chr8_2:66232100-66232119 None:intergenic 40.0%
TGGTCATACGATGAAACAAG+TGG + chr8_2:66232101-66232120 Msa1263120:CDS 40.0%
GACATAGCATACATACACAC+TGG + chr8_2:66232131-66232150 Msa1263120:CDS 40.0%
!! AACAAATAGGTGGGTTGCTT+GGG + chr8_2:66232163-66232182 Msa1263120:CDS 40.0%
ACATTGTAGACACAAGCACA+CGG + chr8_2:66232285-66232304 Msa1263120:CDS 40.0%
TGCCACGTATCAGAATAATG+AGG + chr8_2:66232349-66232368 Msa1263120:CDS 40.0%
AGAGGTTGTTCCATTTGGAA+GGG - chr8_2:66232396-66232415 None:intergenic 40.0%
AAGAGGTTGTTCCATTTGGA+AGG - chr8_2:66232397-66232416 None:intergenic 40.0%
TCCAAATGGAACAACCTCTT+TGG + chr8_2:66232397-66232416 Msa1263120:CDS 40.0%
ACCAAAGAGGTTGTTCCATT+TGG - chr8_2:66232401-66232420 None:intergenic 40.0%
! CAACCTCTTTGGTTCATGTA+TGG + chr8_2:66232408-66232427 Msa1263120:CDS 40.0%
TTGCCATACATGAACCAAAG+AGG - chr8_2:66232414-66232433 None:intergenic 40.0%
TTGGTTCATGTATGGCAAGA+TGG + chr8_2:66232416-66232435 Msa1263120:CDS 40.0%
TGGTTCATGTATGGCAAGAT+GGG + chr8_2:66232417-66232436 Msa1263120:CDS 40.0%
GATTCATGGCTATGTTCTTG+AGG - chr8_2:66232464-66232483 None:intergenic 40.0%
! CCAAGACTTCCTTAGAGTTT+TGG - chr8_2:66232493-66232512 None:intergenic 40.0%
! CCAAAACTCTAAGGAAGTCT+TGG + chr8_2:66232490-66232509 Msa1263120:CDS 40.0%
! GAAGTCTTGGATCTTGTTTC+TGG + chr8_2:66232503-66232522 Msa1263120:CDS 40.0%
!! CACATATGTAAGTACCGAGT+TGG - chr8_2:66232995-66233014 None:intergenic 40.0%
CAACTCGGTACTTACATATG+TGG + chr8_2:66232993-66233012 Msa1263120:intron 40.0%
! AGGGACGATTCTTGTTTGAT+TGG + chr8_2:66233058-66233077 Msa1263120:intron 40.0%
TGTGAAGATAGAACCAAGCA+GGG - chr8_2:66233213-66233232 None:intergenic 40.0%
ATGTGAAGATAGAACCAAGC+AGG - chr8_2:66233214-66233233 None:intergenic 40.0%
GCCTACATAGTTGGATTATC+TGG + chr8_2:66233250-66233269 Msa1263120:CDS 40.0%
!!! GGATTATCTGGTTTTGGTAC+TGG + chr8_2:66233262-66233281 Msa1263120:CDS 40.0%
!! TTTGGTACTGGTCTCAAACT+CGG + chr8_2:66233274-66233293 Msa1263120:CDS 40.0%
AAACTCGGTAGTGATTCAGA+GGG + chr8_2:66233289-66233308 Msa1263120:CDS 40.0%
AAACACTTGAAGAGTTGCCA+AGG - chr8_2:66233359-66233378 None:intergenic 40.0%
AATATCTACCACCACGTTGT+AGG + chr8_2:66233427-66233446 Msa1263120:CDS 40.0%
ATATCTACCACCACGTTGTA+GGG + chr8_2:66233428-66233447 Msa1263120:CDS 40.0%
!!! GAAGCATTGGGAGATTTTGT+AGG + chr8_2:66233496-66233515 Msa1263120:CDS 40.0%
!! AGCATTGGGAGATTTTGTAG+GGG + chr8_2:66233498-66233517 Msa1263120:CDS 40.0%
! AACTGGAAGCATGCTTACAT+TGG + chr8_2:66233532-66233551 Msa1263120:CDS 40.0%
! TGGTATTATTGGTGCTTTGG+GGG + chr8_2:66233552-66233571 Msa1263120:CDS 40.0%
CAACGTAAGCCTCAACATGA+TGG - chr8_2:66231949-66231968 None:intergenic 45.0%
CATCATGTTGAGGCTTACGT+TGG + chr8_2:66231947-66231966 Msa1263120:exon 45.0%
TTTCATCGTATGACCAGTGG+AGG - chr8_2:66232097-66232116 None:intergenic 45.0%
!! CAACAAATAGGTGGGTTGCT+TGG + chr8_2:66232162-66232181 Msa1263120:CDS 45.0%
! ATATGCTTTTGGGCTTCCAC+TGG - chr8_2:66232258-66232277 None:intergenic 45.0%
! GCTACTTTGACCCTTCCAAA+TGG + chr8_2:66232383-66232402 Msa1263120:CDS 45.0%
GGTTCATGTATGGCAAGATG+GGG + chr8_2:66232418-66232437 Msa1263120:CDS 45.0%
GTGTCGCATAGATACCAAAC+AGG - chr8_2:66232911-66232930 None:intergenic 45.0%
!! TGTAAGTACCGAGTTGGTGT+TGG - chr8_2:66232989-66233008 None:intergenic 45.0%
!! CTTGCTATTACTGCTCCTGT+TGG - chr8_2:66233163-66233182 None:intergenic 45.0%
CAACAGGAGCAGTAATAGCA+AGG + chr8_2:66233161-66233180 Msa1263120:CDS 45.0%
CAAGTCTCTGCCTACATAGT+TGG + chr8_2:66233241-66233260 Msa1263120:CDS 45.0%
CAAACTCGGTAGTGATTCAG+AGG + chr8_2:66233288-66233307 Msa1263120:CDS 45.0%
TAACATACCCTACAACGTGG+TGG - chr8_2:66233438-66233457 None:intergenic 45.0%
TGGTAACATACCCTACAACG+TGG - chr8_2:66233441-66233460 None:intergenic 45.0%
TAGGGGATCGTTACAAGAAC+TGG + chr8_2:66233515-66233534 Msa1263120:CDS 45.0%
! GGTATTATTGGTGCTTTGGG+GGG + chr8_2:66233553-66233572 Msa1263120:CDS 45.0%
!! TCCTTTTGGAAGCTTACACG+TGG + chr8_2:66233584-66233603 Msa1263120:CDS 45.0%
TCCACGTGTAAGCTTCCAAA+AGG - chr8_2:66233588-66233607 None:intergenic 45.0%
TTTGGAAGCTTACACGTGGA+TGG + chr8_2:66233588-66233607 Msa1263120:CDS 45.0%
GCAGAGAACAAGACTTCAGA+TGG + chr8_2:66233631-66233650 Msa1263120:CDS 45.0%
! CAACACCTTTCTTCGGTTTG+TGG + chr8_2:66233996-66234015 Msa1263120:three_prime_UTR 45.0%
CAACGTAAGCCTCAACATGA+TGG - chr8_2:66231949-66231968 None:intergenic 45.0%
CATCATGTTGAGGCTTACGT+TGG + chr8_2:66231947-66231966 Msa1263120:exon 45.0%
TTTCATCGTATGACCAGTGG+AGG - chr8_2:66232097-66232116 None:intergenic 45.0%
!! CAACAAATAGGTGGGTTGCT+TGG + chr8_2:66232162-66232181 Msa1263120:CDS 45.0%
! ATATGCTTTTGGGCTTCCAC+TGG - chr8_2:66232258-66232277 None:intergenic 45.0%
! GCTACTTTGACCCTTCCAAA+TGG + chr8_2:66232383-66232402 Msa1263120:CDS 45.0%
GGTTCATGTATGGCAAGATG+GGG + chr8_2:66232418-66232437 Msa1263120:CDS 45.0%
GTGTCGCATAGATACCAAAC+AGG - chr8_2:66232911-66232930 None:intergenic 45.0%
!! TGTAAGTACCGAGTTGGTGT+TGG - chr8_2:66232989-66233008 None:intergenic 45.0%
!! CTTGCTATTACTGCTCCTGT+TGG - chr8_2:66233163-66233182 None:intergenic 45.0%
CAACAGGAGCAGTAATAGCA+AGG + chr8_2:66233161-66233180 Msa1263120:CDS 45.0%
CAAGTCTCTGCCTACATAGT+TGG + chr8_2:66233241-66233260 Msa1263120:CDS 45.0%
CAAACTCGGTAGTGATTCAG+AGG + chr8_2:66233288-66233307 Msa1263120:CDS 45.0%
TAACATACCCTACAACGTGG+TGG - chr8_2:66233438-66233457 None:intergenic 45.0%
TGGTAACATACCCTACAACG+TGG - chr8_2:66233441-66233460 None:intergenic 45.0%
TAGGGGATCGTTACAAGAAC+TGG + chr8_2:66233515-66233534 Msa1263120:CDS 45.0%
! GGTATTATTGGTGCTTTGGG+GGG + chr8_2:66233553-66233572 Msa1263120:CDS 45.0%
!! TCCTTTTGGAAGCTTACACG+TGG + chr8_2:66233584-66233603 Msa1263120:CDS 45.0%
TCCACGTGTAAGCTTCCAAA+AGG - chr8_2:66233588-66233607 None:intergenic 45.0%
TTTGGAAGCTTACACGTGGA+TGG + chr8_2:66233588-66233607 Msa1263120:CDS 45.0%
GCAGAGAACAAGACTTCAGA+TGG + chr8_2:66233631-66233650 Msa1263120:CDS 45.0%
! CAACACCTTTCTTCGGTTTG+TGG + chr8_2:66233996-66234015 Msa1263120:three_prime_UTR 45.0%
! TGGAGGTACGAGGTTAACTG+TGG - chr8_2:66232080-66232099 None:intergenic 50.0%
AGTTAACCTCGTACCTCCAC+TGG + chr8_2:66232081-66232100 Msa1263120:CDS 50.0%
!! AAGGGTGCTGCTTGGATTGA+TGG - chr8_2:66232189-66232208 None:intergenic 50.0%
CAAAGCTTGTGCTCCGATCA+TGG - chr8_2:66232219-66232238 None:intergenic 50.0%
CATGATCGGAGCACAAGCTT+TGG + chr8_2:66232217-66232236 Msa1263120:CDS 50.0%
ACAAGCACACGGTTGCAAGA+AGG + chr8_2:66232296-66232315 Msa1263120:CDS 50.0%
GTGGCAGACAAACCAGAAAC+AGG - chr8_2:66232335-66232354 None:intergenic 50.0%
CGGACTACACTAACACGTGT+TGG - chr8_2:66232965-66232984 None:intergenic 50.0%
TAGTCCGACCAACACCAACT+CGG + chr8_2:66232978-66232997 Msa1263120:intron 50.0%
!! AGTACCGAGTTGGTGTTGGT+CGG - chr8_2:66232985-66233004 None:intergenic 50.0%
TGGGGAATCTTGATGCCAAC+AGG + chr8_2:66233145-66233164 Msa1263120:CDS 50.0%
ATAGAACCAAGCAGGGTCTG+CGG - chr8_2:66233206-66233225 None:intergenic 50.0%
CTGGGAGCAACACCTTTCTT+CGG + chr8_2:66233989-66234008 Msa1263120:three_prime_UTR 50.0%
! TGGAGGTACGAGGTTAACTG+TGG - chr8_2:66232080-66232099 None:intergenic 50.0%
AGTTAACCTCGTACCTCCAC+TGG + chr8_2:66232081-66232100 Msa1263120:CDS 50.0%
!! AAGGGTGCTGCTTGGATTGA+TGG - chr8_2:66232189-66232208 None:intergenic 50.0%
CAAAGCTTGTGCTCCGATCA+TGG - chr8_2:66232219-66232238 None:intergenic 50.0%
CATGATCGGAGCACAAGCTT+TGG + chr8_2:66232217-66232236 Msa1263120:CDS 50.0%
ACAAGCACACGGTTGCAAGA+AGG + chr8_2:66232296-66232315 Msa1263120:CDS 50.0%
GTGGCAGACAAACCAGAAAC+AGG - chr8_2:66232335-66232354 None:intergenic 50.0%
CGGACTACACTAACACGTGT+TGG - chr8_2:66232965-66232984 None:intergenic 50.0%
TAGTCCGACCAACACCAACT+CGG + chr8_2:66232978-66232997 Msa1263120:intron 50.0%
!! AGTACCGAGTTGGTGTTGGT+CGG - chr8_2:66232985-66233004 None:intergenic 50.0%
TGGGGAATCTTGATGCCAAC+AGG + chr8_2:66233145-66233164 Msa1263120:CDS 50.0%
ATAGAACCAAGCAGGGTCTG+CGG - chr8_2:66233206-66233225 None:intergenic 50.0%
CTGGGAGCAACACCTTTCTT+CGG + chr8_2:66233989-66234008 Msa1263120:three_prime_UTR 50.0%
! GTATGACCAGTGGAGGTACG+AGG - chr8_2:66232090-66232109 None:intergenic 55.0%
ACCCTTGACCCAGCCATGAT+CGG + chr8_2:66232203-66232222 Msa1263120:CDS 55.0%
TCCGATCATGGCTGGGTCAA+GGG - chr8_2:66232207-66232226 None:intergenic 55.0%
CTTGTGCTCCGATCATGGCT+GGG - chr8_2:66232214-66232233 None:intergenic 55.0%
! GATCGGAGCACAAGCTTTGG+TGG + chr8_2:66232220-66232239 Msa1263120:CDS 55.0%
GTGGCTATTCCACAAGCCAG+TGG + chr8_2:66232239-66232258 Msa1263120:CDS 55.0%
!! TTTGGGCTTCCACTGGCTTG+TGG - chr8_2:66232251-66232270 None:intergenic 55.0%
GTACCTCCCAAGCTGCAAGT+GGG + chr8_2:66232525-66232544 Msa1263120:CDS 55.0%
AATCCCACTTGCAGCTTGGG+AGG - chr8_2:66232531-66232550 None:intergenic 55.0%
TCCCAAGCTGCAAGTGGGAT+TGG + chr8_2:66232530-66232549 Msa1263120:CDS 55.0%
GCCAATCCCACTTGCAGCTT+GGG - chr8_2:66232534-66232553 None:intergenic 55.0%
AGCCAATCCCACTTGCAGCT+TGG - chr8_2:66232535-66232554 None:intergenic 55.0%
TCAAATCCGCAGACCCTGCT+TGG + chr8_2:66233197-66233216 Msa1263120:CDS 55.0%
! GTATGACCAGTGGAGGTACG+AGG - chr8_2:66232090-66232109 None:intergenic 55.0%
ACCCTTGACCCAGCCATGAT+CGG + chr8_2:66232203-66232222 Msa1263120:CDS 55.0%
TCCGATCATGGCTGGGTCAA+GGG - chr8_2:66232207-66232226 None:intergenic 55.0%
CTTGTGCTCCGATCATGGCT+GGG - chr8_2:66232214-66232233 None:intergenic 55.0%
! GATCGGAGCACAAGCTTTGG+TGG + chr8_2:66232220-66232239 Msa1263120:CDS 55.0%
GTGGCTATTCCACAAGCCAG+TGG + chr8_2:66232239-66232258 Msa1263120:CDS 55.0%
!! TTTGGGCTTCCACTGGCTTG+TGG - chr8_2:66232251-66232270 None:intergenic 55.0%
GTACCTCCCAAGCTGCAAGT+GGG + chr8_2:66232525-66232544 Msa1263120:CDS 55.0%
AATCCCACTTGCAGCTTGGG+AGG - chr8_2:66232531-66232550 None:intergenic 55.0%
TCCCAAGCTGCAAGTGGGAT+TGG + chr8_2:66232530-66232549 Msa1263120:CDS 55.0%
GCCAATCCCACTTGCAGCTT+GGG - chr8_2:66232534-66232553 None:intergenic 55.0%
AGCCAATCCCACTTGCAGCT+TGG - chr8_2:66232535-66232554 None:intergenic 55.0%
TCAAATCCGCAGACCCTGCT+TGG + chr8_2:66233197-66233216 Msa1263120:CDS 55.0%
CTCCGATCATGGCTGGGTCA+AGG - chr8_2:66232208-66232227 None:intergenic 60.0%
GCTTGTGCTCCGATCATGGC+TGG - chr8_2:66232215-66232234 None:intergenic 60.0%
GGTACCTCCCAAGCTGCAAG+TGG + chr8_2:66232524-66232543 Msa1263120:CDS 60.0%
!!! GGGGGGCATTGCTGTCCTTT+TGG + chr8_2:66233570-66233589 Msa1263120:CDS 60.0%
CTCCGATCATGGCTGGGTCA+AGG - chr8_2:66232208-66232227 None:intergenic 60.0%
GCTTGTGCTCCGATCATGGC+TGG - chr8_2:66232215-66232234 None:intergenic 60.0%
GGTACCTCCCAAGCTGCAAG+TGG + chr8_2:66232524-66232543 Msa1263120:CDS 60.0%
!!! GGGGGGCATTGCTGTCCTTT+TGG + chr8_2:66233570-66233589 Msa1263120:CDS 60.0%
!! GCTGGGTCAAGGGTGCTGCT+TGG - chr8_2:66232197-66232216 None:intergenic 65.0%
!! GCTGGGTCAAGGGTGCTGCT+TGG - chr8_2:66232197-66232216 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 66231774 66234019 66231774 ID=Msa1263120;Name=Msa1263120
chr8_2 mRNA 66231774 66234019 66231774 ID=Msa1263120-mRNA-1;Parent=Msa1263120;Name=Msa1263120-mRNA-1;_AED=0.00;_eAED=0.00;_QI=177|1|1|1|1|1|2|326|399
chr8_2 exon 66231774 66232574 66231774 ID=Msa1263120-mRNA-1:exon:21570;Parent=Msa1263120-mRNA-1
chr8_2 exon 66233118 66234019 66233118 ID=Msa1263120-mRNA-1:exon:21571;Parent=Msa1263120-mRNA-1
chr8_2 five_prime_UTR 66231774 66231950 66231774 ID=Msa1263120-mRNA-1:five_prime_utr;Parent=Msa1263120-mRNA-1
chr8_2 CDS 66231951 66232574 66231951 ID=Msa1263120-mRNA-1:cds;Parent=Msa1263120-mRNA-1
chr8_2 CDS 66233118 66233693 66233118 ID=Msa1263120-mRNA-1:cds;Parent=Msa1263120-mRNA-1
chr8_2 three_prime_UTR 66233694 66234019 66233694 ID=Msa1263120-mRNA-1:three_prime_utr;Parent=Msa1263120-mRNA-1
Gene Sequence

>Msa1263120

ATGTTGAGGCTTACGTTGGCCTTGTGTGTTTTGAGTAGCATAATTTTGACATCCTCAGCTCAAACTCAATCATGTAAAAACCAAACATTCTCAAACAACAAAGCATTCACAACATGTCGTGATCTTCCACAGTTAACCTCGTACCTCCACTGGTCATACGATGAAACAAGTGGCAAATTAGACATAGCATACATACACACTGGAATAACTGCAACAAATAGGTGGGTTGCTTGGGCCATCAATCCAAGCAGCACCCTTGACCCAGCCATGATCGGAGCACAAGCTTTGGTGGCTATTCCACAAGCCAGTGGAAGCCCAAAAGCATATACTTCAAACATTGTAGACACAAGCACACGGTTGCAAGAAGGATCCATTAGTTATCCTGTTTCTGGTTTGTCTGCCACGTATCAGAATAATGAGGTTACTATTTTTGCTACTTTGACCCTTCCAAATGGAACAACCTCTTTGGTTCATGTATGGCAAGATGGGGTTCTCTCTTCTGATTCTACTCCTCAAGAACATAGCCATGAATCTTCTCACCAAAACTCTAAGGAAGTCTTGGATCTTGTTTCTGGTACCTCCCAAGCTGCAAGTGGGATTGGCTCGCGTCAAAGAAGAAGAAATACACATGGAATTCTAAATGCAATAAGTTGGGGAATCTTGATGCCAACAGGAGCAGTAATAGCAAGGTATATGAAGGTGTTCAAATCCGCAGACCCTGCTTGGTTCTATCTTCACATAACTTGTCAAGTCTCTGCCTACATAGTTGGATTATCTGGTTTTGGTACTGGTCTCAAACTCGGTAGTGATTCAGAGGGTATTACATACGACACTCATAGAGCACTTGCTATTGTTCTTGTAACCTTGGCAACTCTTCAAGTGTTTGCTCTATTTTTGAGGCCAAACAAAGACCATAAGTTGAGATTTTACTGGAATATCTACCACCACGTTGTAGGGTATGTTACCATAAGCATTAGCATTACAAACGTTTTCAAAGGGTTTGAAGCATTGGGAGATTTTGTAGGGGATCGTTACAAGAACTGGAAGCATGCTTACATTGGTATTATTGGTGCTTTGGGGGGCATTGCTGTCCTTTTGGAAGCTTACACGTGGATGGTGTGCATGAAGAGAAAGAAAGCAGAGAACAAGACTTCAGATGGTGTTAATGGAGCAAATAGCTATGGTTCTTCTACCCTTTAA

Protein sequence

>Msa1263120

MLRLTLALCVLSSIILTSSAQTQSCKNQTFSNNKAFTTCRDLPQLTSYLHWSYDETSGKLDIAYIHTGITATNRWVAWAINPSSTLDPAMIGAQALVAIPQASGSPKAYTSNIVDTSTRLQEGSISYPVSGLSATYQNNEVTIFATLTLPNGTTSLVHVWQDGVLSSDSTPQEHSHESSHQNSKEVLDLVSGTSQAASGIGSRQRRRNTHGILNAISWGILMPTGAVIARYMKVFKSADPAWFYLHITCQVSAYIVGLSGFGTGLKLGSDSEGITYDTHRALAIVLVTLATLQVFALFLRPNKDHKLRFYWNIYHHVVGYVTISISITNVFKGFEALGDFVGDRYKNWKHAYIGIIGALGGIAVLLEAYTWMVCMKRKKAENKTSDGVNGANSYGSSTL*