AlfalfaGEDB | Msa0219210

M. sativa cultivar zhongmu-4 / Msa0219210

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0007043 GO:0008150 GO:0009505 GO:0009531 GO:0009987 GO:0016020 GO:0016043 GO:0022607 GO:0030312 GO:0034329 GO:0034330 GO:0042545 GO:0042802 GO:0042803 GO:0044085 GO:0044426 GO:0044462 GO:0044464 GO:0045216 GO:0045229 GO:0046983 GO:0048037 GO:0048226 GO:0051536 GO:0051540 GO:0071554 GO:0071555 GO:0071840 GO:0071944
PFAM: PF04535.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0219210	XP_003596846.1	96.818	220	7	0	1	220	1	220	1.83e-153	434

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0219210	sp\|G7IHF9\|CASP4_MEDTR	96.818	220	7	0	1	220	1	220	2.29e-156	434

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0219210	A0A396JB04	96.818	220	7	0	1	220	1	220	8.74e-154	434

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004580	Msa0219210	0.851165	1.060240e-60	-8.615850e-47
Msa0004590	Msa0219210	0.804235	2.381569e-49	-8.615850e-47
Msa0024280	Msa0219210	0.826567	2.527872e-54	-8.615850e-47
Msa0024290	Msa0219210	0.808910	2.455797e-50	-8.615850e-47
Msa0032130	Msa0219210	0.803529	3.337995e-49	-8.615850e-47
Msa0048950	Msa0219210	0.867624	1.192955e-65	-8.615850e-47
Msa0057870	Msa0219210	0.823672	1.221248e-53	-8.615850e-47
Msa0059880	Msa0219210	0.867060	1.807652e-65	-8.615850e-47
Msa0072030	Msa0219210	0.831854	1.318575e-55	-8.615850e-47
Msa0074620	Msa0219210	0.815116	1.090307e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0219210	MtrunA17_Chr2g0321671	96.818	220	7	0	1	220	1	220	1.68e-157	434
Msa0219210	MtrunA17_Chr1g0178161	59.064	171	70	0	49	219	25	195	3.24e-61	190
Msa0219210	MtrunA17_Chr1g0178181	59.538	173	70	0	47	219	22	194	1.60e-57	180
Msa0219210	MtrunA17_Chr1g0178191	56.725	171	74	0	49	219	23	193	2.58e-55	175
Msa0219210	MtrunA17_Chr7g0217691	48.276	174	90	0	46	219	12	185	1.11e-50	162
Msa0219210	MtrunA17_Chr4g0042551	43.243	185	99	1	42	220	33	217	9.46e-47	154
Msa0219210	MtrunA17_Chr5g0417761	43.590	195	100	1	26	220	2	186	3.23e-42	141
Msa0219210	MtrunA17_Chr7g0251531	33.094	139	90	2	65	202	33	169	2.95e-16	73.9
Msa0219210	MtrunA17_Chr4g0021111	34.899	149	84	4	55	201	1	138	4.77e-16	72.8
Msa0219210	MtrunA17_Chr7g0268681	28.877	187	115	5	24	206	3	175	3.41e-15	71.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0219210	AT2G27370.1	49.091	220	103	4	3	220	8	220	3.69e-64	198
Msa0219210	AT2G36100.1	54.762	168	76	0	52	219	38	205	9.78e-59	184
Msa0219210	AT5G06200.1	60.479	167	66	0	53	219	35	201	4.06e-54	172
Msa0219210	AT5G15290.1	49.686	159	79	1	43	200	8	166	1.58e-51	165
Msa0219210	AT3G11550.1	59.880	167	67	0	53	219	37	203	7.10e-50	161
Msa0219210	AT1G14160.1	43.030	165	94	0	55	219	44	208	2.84e-42	142
Msa0219210	AT1G17200.1	29.193	161	105	3	58	217	29	181	2.83e-15	72.0
Msa0219210	AT3G06390.1	28.161	174	104	4	24	190	11	170	3.35e-15	71.6
Msa0219210	AT5G44550.1	30.247	162	101	4	66	219	22	179	6.08e-12	62.8
Msa0219210	AT1G03700.1	32.000	150	80	5	65	206	12	147	3.01e-11	60.1

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Find 48 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCTACTCCAATCCAAAA+AGG	0.350579	2_1:+66714608	Msa0219210:CDS
AACATGCAGGTTCTTTGTGG+TGG	0.566783	2_1:+66715360	Msa0219210:intron
AATCCGTGGACCAGCTGCAA+GGG	0.560165	2_1:-66715449	None:intergenic
ACAACAGTTGCAGCATGTGG+AGG	0.650553	2_1:-66714578	None:intergenic
ACAATGCAGACAATTGAGAA+TGG	0.577153	2_1:-66715421	None:intergenic
ACACCACAACCAAACAAGAT+AGG	0.440488	2_1:-66715781	None:intergenic
ACATGAACTTACTTAAACAT+TGG	0.425523	2_1:-66714785	None:intergenic
ACGATGACAAGTAGAATCCG+TGG	0.676654	2_1:-66715463	None:intergenic
AGAACAAGAAGCAATGGAAA+AGG	0.427010	2_1:+66714530	Msa0219210:CDS
AGCACCAAGAGTAGCACCAA+TGG	0.630653	2_1:-66714681	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATCTACTCCAATCCAAAA+AGG	+	chr2_1:66714608-66714627	Msa0219210:CDS	30.0%
CAAAAAGGTGGAATGAAAAA+GGG	+	chr2_1:66714623-66714642	Msa0219210:CDS	30.0%
TGTGTTTCAGTTAAAATAGG+AGG	-	chr2_1:66714934-66714953	None:intergenic	30.0%
AACATGTCACGTCATAAAAT+AGG	-	chr2_1:66715037-66715056	None:intergenic	30.0%
GCATGTTTAGATCCATAAAA+AGG	-	chr2_1:66715347-66715366	None:intergenic	30.0%
TACCTAATTGCAGGTATTAA+TGG	+	chr2_1:66715601-66715620	Msa0219210:intron	30.0%
AAATCTACTCCAATCCAAAA+AGG	+	chr2_1:66714608-66714627	Msa0219210:CDS	30.0%
CAAAAAGGTGGAATGAAAAA+GGG	+	chr2_1:66714623-66714642	Msa0219210:CDS	30.0%
TGTGTTTCAGTTAAAATAGG+AGG	-	chr2_1:66714934-66714953	None:intergenic	30.0%
AACATGTCACGTCATAAAAT+AGG	-	chr2_1:66715037-66715056	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	66714473	66715829	66714473	ID=Msa0219210;Name=Msa0219210
chr2_1	mRNA	66714473	66715829	66714473	ID=Msa0219210-mRNA-1;Parent=Msa0219210;Name=Msa0219210-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0\|0\|0\|1\|1\|1\|3\|0\|220
chr2_1	exon	66714473	66714795	66714473	ID=Msa0219210-mRNA-1:exon:18820;Parent=Msa0219210-mRNA-1
chr2_1	exon	66715369	66715492	66715369	ID=Msa0219210-mRNA-1:exon:18821;Parent=Msa0219210-mRNA-1
chr2_1	exon	66715614	66715829	66715614	ID=Msa0219210-mRNA-1:exon:18822;Parent=Msa0219210-mRNA-1
chr2_1	CDS	66714473	66714795	66714473	ID=Msa0219210-mRNA-1:cds;Parent=Msa0219210-mRNA-1
chr2_1	CDS	66715369	66715492	66715369	ID=Msa0219210-mRNA-1:cds;Parent=Msa0219210-mRNA-1
chr2_1	CDS	66715614	66715829	66715614	ID=Msa0219210-mRNA-1:cds;Parent=Msa0219210-mRNA-1

Gene Sequence

>Msa0219210

ATGGACTCAAGAAGAGAAGTTGAGGAATCATCAACAGCTCCCATCCTAGAATCCAAGAGAACAAGAAGCAATGGAAAAGGGAAATCCATTGATGGAGATCATTCTCCTCCACATGCTGCAACTGTTGTTACAACAAAATCTACTCCAATCCAAAAAGGTGGAATGAAAAAGGGAATTGCAATCTTAGACTTCATTTTAAGGCTTGGTGCCATTGGTGCTACTCTTGGTGCTTCTGTCATTATGGGGACTAATGAACAAATACTTCCTTTCTTTACTCAGTTCCTTCAGTTTCATGCTCAATGGGATGATTTTCCAATGTTTAAGTTCTTTGTGGTGGCAAATGGAGCAGCAGCTGGATTTCTCATCCTCTCCTTACCATTCTCAATTGTCTGCATTGTTAGACCCCTTGCAGCTGGTCCACGGATTCTACTTGTCATCGTTGATTTAGTATTAATGGCCTTAGTGGTTGCAGCTGCTTCATCTGCTGCAGCTGTTGTGTACTTAGCACACAATGGGAGTCAAGATGCAAACTGGAATGCTATTTGTCAGCAGTTCACTGATTTTTGCCAAGGTTCAAGTTTGGCTGTGGTTGTTTCTTTCGTTGCGTCGGTTTTCCTATCTTGTTTGGTTGTGGTGTCTTCTGTAGCTCTCAAAAGGACTTAA

Protein sequence

>Msa0219210

MDSRREVEESSTAPILESKRTRSNGKGKSIDGDHSPPHAATVVTTKSTPIQKGGMKKGIAILDFILRLGAIGATLGASVIMGTNEQILPFFTQFLQFHAQWDDFPMFKFFVVANGAAAGFLILSLPFSIVCIVRPLAAGPRILLVIVDLVLMALVVAAASSAAAVVYLAHNGSQDANWNAICQQFTDFCQGSSLAVVVSFVASVFLSCLVVVSSVALKRT*