Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0624050 | XP_003605789.2 | 92.746 | 386 | 12 | 1 | 1 | 386 | 1 | 370 | 0.0 | 728 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004580 | Msa0624050 | 0.809840 | 1.551062e-50 | -8.615850e-47 |
| Msa0004590 | Msa0624050 | 0.831183 | 1.928360e-55 | -8.615850e-47 |
| Msa0025700 | Msa0624050 | 0.819079 | 1.402008e-52 | -8.615850e-47 |
| Msa0033120 | Msa0624050 | 0.800144 | 1.654292e-48 | -8.615850e-47 |
| Msa0038010 | Msa0624050 | 0.802643 | 5.089887e-49 | -8.615850e-47 |
| Msa0043840 | Msa0624050 | 0.818567 | 1.832524e-52 | -8.615850e-47 |
| Msa0045620 | Msa0624050 | 0.801530 | 8.621070e-49 | -8.615850e-47 |
| Msa0048950 | Msa0624050 | 0.855599 | 5.661563e-62 | -8.615850e-47 |
| Msa0057860 | Msa0624050 | 0.810380 | 1.186174e-50 | -8.615850e-47 |
| Msa0059880 | Msa0624050 | 0.842466 | 2.541906e-58 | -8.615850e-47 |
| Msa0072030 | Msa0624050 | 0.802263 | 6.094576e-49 | -8.615850e-47 |
| Msa0073270 | Msa0624050 | 0.811412 | 7.092829e-51 | -8.615850e-47 |
| Msa0078160 | Msa0624050 | -0.806899 | 6.573812e-50 | -8.615850e-47 |
| Msa0090500 | Msa0624050 | 0.814302 | 1.650811e-51 | -8.615850e-47 |
| Msa0102920 | Msa0624050 | 0.831044 | 2.085872e-55 | -8.615850e-47 |
| Msa0112640 | Msa0624050 | 0.802678 | 5.004930e-49 | -8.615850e-47 |
| Msa0603950 | Msa0624050 | 0.819363 | 1.208043e-52 | -8.615850e-47 |
| Msa0605350 | Msa0624050 | 0.802533 | 5.363222e-49 | -8.615850e-47 |
| Msa0605410 | Msa0624050 | 0.804259 | 2.353623e-49 | -8.615850e-47 |
| Msa0605470 | Msa0624050 | 0.812971 | 3.241277e-51 | -8.615850e-47 |
| Msa0610190 | Msa0624050 | 0.822548 | 2.233310e-53 | -8.615850e-47 |
| Msa0623310 | Msa0624050 | 0.806090 | 9.736602e-50 | -8.615850e-47 |
| Msa0623980 | Msa0624050 | 0.835460 | 1.656260e-56 | -8.615850e-47 |
| Msa0624050 | Msa0624930 | 0.815767 | 7.810648e-52 | -8.615850e-47 |
| Msa0624050 | Msa0626980 | 0.821237 | 4.493275e-53 | -8.615850e-47 |
| Msa0624050 | Msa0627360 | 0.827749 | 1.317554e-54 | -8.615850e-47 |
| Msa0624050 | Msa0651090 | 0.812054 | 5.140930e-51 | -8.615850e-47 |
| Msa0624050 | Msa0655370 | 0.808095 | 3.664577e-50 | -8.615850e-47 |
| Msa0624050 | Msa0660070 | -0.804547 | 2.050400e-49 | -8.615850e-47 |
| Msa0624050 | Msa0667600 | 0.805848 | 1.094744e-49 | -8.615850e-47 |
| Msa0624050 | Msa0670360 | 0.815414 | 9.360938e-52 | -8.615850e-47 |
| Msa0624050 | Msa0671400 | 0.803130 | 4.038234e-49 | -8.615850e-47 |
| Msa0624050 | Msa0673940 | 0.841823 | 3.760794e-58 | -8.615850e-47 |
| Msa0624050 | Msa0676140 | 0.938283 | 8.686794e-99 | -8.615850e-47 |
| Msa0624050 | Msa0676190 | 0.943469 | 1.137675e-102 | -8.615850e-47 |
| Msa0624050 | Msa0676200 | 0.858462 | 8.101860e-63 | -8.615850e-47 |
| Msa0624050 | Msa0678620 | 0.824319 | 8.607165e-54 | -8.615850e-47 |
| Msa0624050 | Msa0705810 | -0.802972 | 4.351907e-49 | -8.615850e-47 |
| Msa0624050 | Msa0715510 | 0.807342 | 5.298455e-50 | -8.615850e-47 |
| Msa0624050 | Msa0716700 | 0.800744 | 1.248454e-48 | -8.615850e-47 |
| Msa0624050 | Msa0716980 | 0.816947 | 4.252531e-52 | -8.615850e-47 |
| Msa0624050 | Msa0727480 | 0.811335 | 7.369132e-51 | -8.615850e-47 |
| Msa0624050 | Msa0735340 | 0.817495 | 3.202162e-52 | -8.615850e-47 |
| Msa0624050 | Msa0738410 | 0.804029 | 2.628484e-49 | -8.615850e-47 |
| Msa0624050 | Msa0758000 | 0.807894 | 4.044925e-50 | -8.615850e-47 |
| Msa0624050 | Msa0761830 | 0.803489 | 3.402778e-49 | -8.615850e-47 |
| Msa0624050 | Msa0768670 | 0.814981 | 1.168195e-51 | -8.615850e-47 |
| Msa0624050 | Msa0768720 | 0.817352 | 3.447576e-52 | -8.615850e-47 |
| Msa0624050 | Msa0777210 | 0.808654 | 2.785419e-50 | -8.615850e-47 |
| Msa0624050 | Msa0791300 | 0.861161 | 1.246390e-63 | -8.615850e-47 |
| Msa0624050 | Msa0804170 | 0.815863 | 7.434755e-52 | -8.615850e-47 |
| Msa0624050 | Msa0813840 | 0.804930 | 1.705328e-49 | -8.615850e-47 |
| Msa0624050 | Msa0822740 | 0.800022 | 1.751445e-48 | -8.615850e-47 |
| Msa0624050 | Msa0847140 | 0.807983 | 3.870940e-50 | -8.615850e-47 |
| Msa0624050 | Msa0864160 | 0.803052 | 4.190287e-49 | -8.615850e-47 |
| Msa0624050 | Msa0871420 | 0.809487 | 1.846455e-50 | -8.615850e-47 |
| Msa0624050 | Msa0883640 | 0.847079 | 1.451178e-59 | -8.615850e-47 |
| Msa0624050 | Msa0893840 | 0.802343 | 5.870003e-49 | -8.615850e-47 |
| Msa0624050 | Msa0902340 | 0.835112 | 2.027907e-56 | -8.615850e-47 |
| Msa0624050 | Msa0910590 | 0.800842 | 1.191896e-48 | -8.615850e-47 |
| Msa0624050 | Msa0910830 | 0.845871 | 3.099517e-59 | -8.615850e-47 |
| Msa0624050 | Msa0931370 | 0.807258 | 5.518363e-50 | -8.615850e-47 |
| Msa0624050 | Msa0932150 | 0.814057 | 1.869853e-51 | -8.615850e-47 |
| Msa0624050 | Msa0936630 | 0.801975 | 6.987409e-49 | -8.615850e-47 |
| Msa0624050 | Msa0960090 | 0.849123 | 3.956964e-60 | -8.615850e-47 |
| Msa0624050 | Msa0973770 | 0.807746 | 4.348468e-50 | -8.615850e-47 |
| Msa0624050 | Msa0973890 | -0.811748 | 5.993625e-51 | -8.615850e-47 |
| Msa0624050 | Msa0985700 | 0.847694 | 9.833237e-60 | -8.615850e-47 |
| Msa0624050 | Msa0993450 | 0.808358 | 3.221846e-50 | -8.615850e-47 |
| Msa0624050 | Msa1003110 | 0.805401 | 1.358976e-49 | -8.615850e-47 |
| Msa0624050 | Msa1021620 | 0.826469 | 2.667544e-54 | -8.615850e-47 |
| Msa0624050 | Msa1026050 | 0.806485 | 8.039732e-50 | -8.615850e-47 |
| Msa0624050 | Msa1036020 | 0.810148 | 1.331379e-50 | -8.615850e-47 |
| Msa0624050 | Msa1040330 | 0.807155 | 5.802185e-50 | -8.615850e-47 |
| Msa0624050 | Msa1061670 | 0.825056 | 5.771162e-54 | -8.615850e-47 |
| Msa0624050 | Msa1076830 | 0.834629 | 2.683756e-56 | -8.615850e-47 |
| Msa0624050 | Msa1078300 | 0.812264 | 4.627399e-51 | -8.615850e-47 |
| Msa0624050 | Msa1078600 | -0.802976 | 4.343870e-49 | -8.615850e-47 |
| Msa0624050 | Msa1085560 | 0.806180 | 9.324269e-50 | -8.615850e-47 |
| Msa0624050 | Msa1106960 | 0.812290 | 4.567945e-51 | -8.615850e-47 |
| Msa0624050 | Msa1109880 | 0.818789 | 1.631794e-52 | -8.615850e-47 |
| Msa0624050 | Msa1109890 | 0.845481 | 3.954179e-59 | -8.615850e-47 |
| Msa0624050 | Msa1130770 | 0.833427 | 5.366739e-56 | -8.615850e-47 |
| Msa0624050 | Msa1133860 | 0.803805 | 2.925341e-49 | -8.615850e-47 |
| Msa0624050 | Msa1149020 | 0.806318 | 8.718371e-50 | -8.615850e-47 |
| Msa0624050 | Msa1170320 | 0.825452 | 4.651413e-54 | -8.615850e-47 |
| Msa0624050 | Msa1187900 | 0.814323 | 1.633774e-51 | -8.615850e-47 |
| Msa0624050 | Msa1214960 | 0.819253 | 1.280022e-52 | -8.615850e-47 |
| Msa0624050 | Msa1216600 | 0.806005 | 1.014745e-49 | -8.615850e-47 |
| Msa0624050 | Msa1217890 | 0.802402 | 5.707758e-49 | -8.615850e-47 |
| Msa0624050 | Msa1220720 | 0.823434 | 1.388338e-53 | -8.615850e-47 |
| Msa0624050 | Msa1255710 | 0.805533 | 1.275334e-49 | -8.615850e-47 |
| Msa0624050 | Msa1265570 | 0.819735 | 9.937506e-53 | -8.615850e-47 |
| Msa0624050 | Msa1286420 | 0.815042 | 1.132257e-51 | -8.615850e-47 |
| Msa0624050 | Msa1288970 | -0.827420 | 1.580214e-54 | -8.615850e-47 |
| Msa0624050 | Msa1300610 | 0.806086 | 9.758125e-50 | -8.615850e-47 |
| Msa0624050 | Msa1323030 | 0.822453 | 2.349891e-53 | -8.615850e-47 |
| Msa0624050 | Msa1323120 | 0.802871 | 4.568065e-49 | -8.615850e-47 |
| Msa0624050 | Msa1329740 | 0.808754 | 2.651822e-50 | -8.615850e-47 |
| Msa0624050 | Msa1334670 | 0.819782 | 9.692295e-53 | -8.615850e-47 |
| Msa0624050 | Msa1335500 | 0.805951 | 1.041657e-49 | -8.615850e-47 |
| Msa0624050 | Msa1349420 | 0.800688 | 1.281382e-48 | -8.615850e-47 |
| Msa0624050 | Msa1357490 | 0.825124 | 5.562358e-54 | -8.615850e-47 |
| Msa0624050 | Msa1357860 | 0.820319 | 7.303614e-53 | -8.615850e-47 |
| Msa0624050 | Msa1362590 | 0.814815 | 1.271046e-51 | -8.615850e-47 |
| Msa0624050 | Msa1363690 | 0.800694 | 1.277832e-48 | -8.615850e-47 |
| Msa0624050 | Msa1365230 | 0.819939 | 8.926435e-53 | -8.615850e-47 |
| Msa0624050 | Msa1365850 | 0.813494 | 2.487970e-51 | -8.615850e-47 |
| Msa0624050 | Msa1369180 | -0.803979 | 2.691510e-49 | -8.615850e-47 |
| Msa0624050 | Msa1371800 | 0.811157 | 8.056231e-51 | -8.615850e-47 |
| Msa0624050 | Msa1373560 | 0.822098 | 2.841175e-53 | -8.615850e-47 |
| Msa0624050 | Msa1376070 | 0.836915 | 7.072573e-57 | -8.615850e-47 |
| Msa0624050 | Msa1376310 | 0.804298 | 2.309783e-49 | -8.615850e-47 |
| Msa0624050 | Msa1377460 | 0.803049 | 4.195568e-49 | -8.615850e-47 |
| Msa0624050 | Msa1377520 | 0.806848 | 6.739664e-50 | -8.615850e-47 |
| Msa0624050 | Msa1378400 | 0.965804 | 4.403142e-125 | -8.615850e-47 |
| Msa0624050 | Msa1396550 | 0.805180 | 1.511932e-49 | -8.615850e-47 |
| Msa0624050 | Msa1407670 | 0.832611 | 8.564995e-56 | -8.615850e-47 |
| Msa0624050 | Msa1409600 | 0.800987 | 1.113603e-48 | -8.615850e-47 |
| Msa0624050 | Msa1413020 | 0.819659 | 1.034245e-52 | -8.615850e-47 |
| Msa0624050 | Msa1414650 | 0.802179 | 6.344537e-49 | -8.615850e-47 |
| Msa0624050 | Msa1417220 | 0.811116 | 8.221576e-51 | -8.615850e-47 |
| Msa0624050 | Msa1417950 | 0.803372 | 3.597695e-49 | -8.615850e-47 |
| Msa0624050 | Msa1420020 | 0.808226 | 3.437314e-50 | -8.615850e-47 |
| Msa0624050 | Msa1421120 | 0.860057 | 2.693211e-63 | -8.615850e-47 |
| Msa0624050 | Msa1421130 | 0.804560 | 2.037583e-49 | -8.615850e-47 |
| Msa0624050 | Msa1421540 | 0.803000 | 4.294407e-49 | -8.615850e-47 |
| Msa0624050 | Msa1434700 | 0.807351 | 5.274900e-50 | -8.615850e-47 |
| Msa0624050 | Msa1447900 | 0.828975 | 6.666857e-55 | -8.615850e-47 |
| Msa0624050 | Msa1449770 | 0.838095 | 3.523971e-57 | -8.615850e-47 |
| Msa0624050 | Msa1459610 | 0.812416 | 4.285688e-51 | -8.615850e-47 |
| Msa0128340 | Msa0624050 | 0.804103 | 2.536147e-49 | -8.615850e-47 |
| Msa0128740 | Msa0624050 | 0.809326 | 1.999947e-50 | -8.615850e-47 |
| Msa0129270 | Msa0624050 | 0.806070 | 9.832974e-50 | -8.615850e-47 |
| Msa0131460 | Msa0624050 | 0.811626 | 6.373517e-51 | -8.615850e-47 |
| Msa0137970 | Msa0624050 | 0.815105 | 1.096137e-51 | -8.615850e-47 |
| Msa0140270 | Msa0624050 | 0.806581 | 7.673148e-50 | -8.615850e-47 |
| Msa0147670 | Msa0624050 | 0.834621 | 2.696462e-56 | -8.615850e-47 |
| Msa0147680 | Msa0624050 | 0.825598 | 4.295538e-54 | -8.615850e-47 |
| Msa0150910 | Msa0624050 | 0.818544 | 1.854532e-52 | -8.615850e-47 |
| Msa0190670 | Msa0624050 | 0.800905 | 1.157379e-48 | -8.615850e-47 |
| Msa0190890 | Msa0624050 | 0.805103 | 1.569051e-49 | -8.615850e-47 |
| Msa0210790 | Msa0624050 | 0.821059 | 4.938313e-53 | -8.615850e-47 |
| Msa0210850 | Msa0624050 | 0.834108 | 3.626622e-56 | -8.615850e-47 |
| Msa0212550 | Msa0624050 | 0.804543 | 2.053522e-49 | -8.615850e-47 |
| Msa0219210 | Msa0624050 | 0.807251 | 5.538268e-50 | -8.615850e-47 |
| Msa0235080 | Msa0624050 | 0.812545 | 4.017118e-51 | -8.615850e-47 |
| Msa0238110 | Msa0624050 | 0.802686 | 4.987623e-49 | -8.615850e-47 |
| Msa0374130 | Msa0624050 | 0.820580 | 6.362335e-53 | -8.615850e-47 |
| Msa0430460 | Msa0624050 | 0.806365 | 8.521077e-50 | -8.615850e-47 |
| Msa0444200 | Msa0624050 | 0.839652 | 1.394390e-57 | -8.615850e-47 |
| Msa0469550 | Msa0624050 | 0.813957 | 1.967442e-51 | -8.615850e-47 |
| Msa0251120 | Msa0624050 | 0.808589 | 2.875580e-50 | -8.615850e-47 |
| Msa0259300 | Msa0624050 | 0.807025 | 6.184106e-50 | -8.615850e-47 |
| Msa0260980 | Msa0624050 | 0.815880 | 7.369258e-52 | -8.615850e-47 |
| Msa0261400 | Msa0624050 | 0.800881 | 1.170411e-48 | -8.615850e-47 |
| Msa0273360 | Msa0624050 | 0.816627 | 5.017031e-52 | -8.615850e-47 |
| Msa0275570 | Msa0624050 | 0.806505 | 7.963178e-50 | -8.615850e-47 |
| Msa0278480 | Msa0624050 | 0.815332 | 9.762489e-52 | -8.615850e-47 |
| Msa0278940 | Msa0624050 | 0.810711 | 1.006444e-50 | -8.615850e-47 |
| Msa0278950 | Msa0624050 | 0.804262 | 2.350283e-49 | -8.615850e-47 |
| Msa0298270 | Msa0624050 | 0.818803 | 1.619697e-52 | -8.615850e-47 |
| Msa0327890 | Msa0624050 | 0.823190 | 1.582941e-53 | -8.615850e-47 |
| Msa0336430 | Msa0624050 | 0.810507 | 1.113502e-50 | -8.615850e-47 |
| Msa0336460 | Msa0624050 | 0.802655 | 5.059967e-49 | -8.615850e-47 |
| Msa0336520 | Msa0624050 | 0.831151 | 1.963258e-55 | -8.615850e-47 |
| Msa0349930 | Msa0624050 | 0.804507 | 2.089637e-49 | -8.615850e-47 |
| Msa0491760 | Msa0624050 | 0.859639 | 3.598431e-63 | -8.615850e-47 |
| Msa0491770 | Msa0624050 | 0.818285 | 2.122688e-52 | -8.615850e-47 |
| Msa0515260 | Msa0624050 | 0.809575 | 1.768642e-50 | -8.615850e-47 |
| Msa0529360 | Msa0624050 | 0.820576 | 6.375363e-53 | -8.615850e-47 |
| Msa0530660 | Msa0624050 | 0.825659 | 4.155188e-54 | -8.615850e-47 |
| Msa0548970 | Msa0624050 | 0.801676 | 8.045468e-49 | -8.615850e-47 |
| Msa0549870 | Msa0624050 | 0.807283 | 5.451248e-50 | -8.615850e-47 |
| Msa0577050 | Msa0624050 | -0.809603 | 1.743669e-50 | -8.615850e-47 |
| Msa0584970 | Msa0624050 | 0.833386 | 5.494392e-56 | -8.615850e-47 |
| Msa0587180 | Msa0624050 | 0.845435 | 4.068840e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0624050 | MtrunA17_Chr4g0019571 | 92.746 | 386 | 12 | 1 | 1 | 386 | 1 | 370 | 0.0 | 728 |
| Msa0624050 | MtrunA17_Chr4g0019601 | 83.679 | 386 | 47 | 1 | 1 | 386 | 1 | 370 | 0.0 | 672 |
| Msa0624050 | MtrunA17_Chr4g0019581 | 82.946 | 387 | 49 | 2 | 1 | 386 | 69 | 439 | 0.0 | 665 |
| Msa0624050 | MtrunA17_Chr3g0089391 | 77.807 | 383 | 69 | 1 | 4 | 386 | 1 | 367 | 0.0 | 603 |
| Msa0624050 | MtrunA17_Chr1g0149051 | 52.023 | 346 | 148 | 3 | 37 | 380 | 39 | 368 | 6.31e-127 | 370 |
| Msa0624050 | MtrunA17_Chr2g0332541 | 45.714 | 350 | 168 | 3 | 37 | 380 | 28 | 361 | 2.75e-107 | 320 |
| Msa0624050 | MtrunA17_Chr2g0286051 | 41.449 | 345 | 185 | 2 | 37 | 380 | 35 | 363 | 9.84e-93 | 283 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0624050 | AT3G08030.1 | 65.169 | 356 | 107 | 2 | 32 | 386 | 26 | 365 | 5.25e-172 | 484 |
| Msa0624050 | AT3G08030.2 | 65.782 | 339 | 99 | 2 | 49 | 386 | 1 | 323 | 1.70e-165 | 466 |
| Msa0624050 | AT2G41800.1 | 57.759 | 348 | 130 | 2 | 37 | 383 | 36 | 367 | 1.91e-146 | 420 |
| Msa0624050 | AT2G41810.1 | 55.882 | 374 | 142 | 4 | 14 | 380 | 7 | 364 | 2.35e-146 | 419 |
| Msa0624050 | AT5G11420.1 | 53.043 | 345 | 145 | 2 | 37 | 380 | 30 | 358 | 7.03e-131 | 380 |
| Msa0624050 | AT5G25460.1 | 50.000 | 378 | 171 | 3 | 4 | 380 | 1 | 361 | 3.07e-130 | 379 |
| Msa0624050 | AT4G32460.2 | 51.304 | 345 | 151 | 2 | 37 | 380 | 29 | 357 | 3.85e-127 | 370 |
| Msa0624050 | AT4G32460.1 | 51.304 | 345 | 151 | 2 | 37 | 380 | 29 | 357 | 3.85e-127 | 370 |
| Msa0624050 | AT4G32460.4 | 51.652 | 333 | 144 | 2 | 49 | 380 | 1 | 317 | 6.36e-125 | 363 |
| Msa0624050 | AT4G32460.3 | 51.652 | 333 | 144 | 2 | 49 | 380 | 1 | 317 | 6.36e-125 | 363 |
| Msa0624050 | AT1G80240.1 | 47.826 | 345 | 163 | 2 | 37 | 380 | 32 | 360 | 3.79e-110 | 327 |
| Msa0624050 | AT1G29980.2 | 40.678 | 354 | 184 | 3 | 37 | 380 | 7 | 344 | 5.27e-93 | 283 |
| Msa0624050 | AT1G29980.1 | 40.678 | 354 | 184 | 3 | 37 | 380 | 43 | 380 | 2.21e-92 | 283 |
| Msa0624050 | AT2G34510.1 | 40.857 | 350 | 185 | 3 | 37 | 380 | 43 | 376 | 7.05e-91 | 279 |
| Msa0624050 | AT2G34510.2 | 41.830 | 306 | 156 | 3 | 81 | 380 | 1 | 290 | 4.34e-81 | 251 |
| Msa0624050 | AT5G14150.2 | 26.667 | 390 | 233 | 12 | 14 | 386 | 8 | 361 | 2.05e-29 | 117 |
| Msa0624050 | AT5G14150.1 | 26.667 | 390 | 233 | 12 | 14 | 386 | 8 | 361 | 2.05e-29 | 117 |
Find 105 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTTGTTGTGTTGAAAAT+AGG | 0.118027 | 4_3:+1882640 | None:intergenic |
| CTTTGAATCAATAAATTTAA+TGG | 0.130784 | 4_3:+1882546 | None:intergenic |
| GCCTATATTTGCAGATAATT+TGG | 0.140639 | 4_3:-1882695 | Msa0624050:intron |
| CTTAAAGTTTACTTCCAAAA+TGG | 0.175065 | 4_3:-1884163 | Msa0624050:intron |
| CTTGTTTCCTTTATGAATCT+TGG | 0.194424 | 4_3:+1884118 | None:intergenic |
| ATGAACAATGTCCATTTATC+TGG | 0.248484 | 4_3:-1883658 | Msa0624050:CDS |
| TCCTACTTGTGGTCCACTTT+TGG | 0.248583 | 4_3:-1883729 | Msa0624050:CDS |
| TCTCTTCAAAGTTCCCATTT+TGG | 0.257255 | 4_3:+1884149 | None:intergenic |
| TTCATATTGTAGACTTTGTT+TGG | 0.283032 | 4_3:+1882439 | None:intergenic |
| CATTTGTTGTGTTGAAAATA+GGG | 0.295242 | 4_3:+1882641 | None:intergenic |
| CATACAAGGATTGATGATAT+TGG | 0.295621 | 4_3:-1882235 | Msa0624050:CDS |
| TCCTTTATGAATCTTGGGTT+TGG | 0.305420 | 4_3:+1884124 | None:intergenic |
| CAATGGTATGCTCTAATATT+AGG | 0.315217 | 4_3:-1883926 | Msa0624050:CDS |
| CAGGTTTGACCTTGATGGTT+TGG | 0.315262 | 4_3:+1883951 | None:intergenic |
| AAAGTTCCTTTCAAATCTTT+AGG | 0.319577 | 4_3:-1882340 | Msa0624050:CDS |
| TAGACCATTGATTTCCCATT+TGG | 0.321175 | 4_3:+1884072 | None:intergenic |
| AATAAATTTAATGGCTTTGA+GGG | 0.322824 | 4_3:+1882555 | None:intergenic |
| CTTCTTGCATACCAGGGTTA+TGG | 0.328613 | 4_3:+1883753 | None:intergenic |
| CTGCAGAGAATCCAGATAAA+TGG | 0.332225 | 4_3:+1883647 | None:intergenic |
| TTGTTTCCTTTATGAATCTT+GGG | 0.332661 | 4_3:+1884119 | None:intergenic |
| CAATGGTGATGTTATTGCTT+GGG | 0.353561 | 4_3:-1883813 | Msa0624050:CDS |
| AAGAATTTCCAAGTGCCATT+TGG | 0.355884 | 4_3:-1882526 | Msa0624050:CDS |
| AGGTTTGACCTTGATGGTTT+GGG | 0.356574 | 4_3:+1883952 | None:intergenic |
| TTGACCAGGTTTGACCTTGA+TGG | 0.371778 | 4_3:+1883946 | None:intergenic |
| GACACAAGATCTTGTTGCTT+TGG | 0.386124 | 4_3:+1882604 | None:intergenic |
| GAAAACATTCACTTCCCAAA+TGG | 0.392506 | 4_3:-1884087 | Msa0624050:CDS |
| GGAGCAGTGGAGCTTGTTGC+AGG | 0.392515 | 4_3:-1882499 | Msa0624050:CDS |
| TTGTGTCACCACTCCCTGGC+TGG | 0.399232 | 4_3:-1882588 | Msa0624050:CDS |
| TTAAAGTTTACTTCCAAAAT+GGG | 0.399296 | 4_3:-1884162 | Msa0624050:intron |
| CAATAAATTTAATGGCTTTG+AGG | 0.405241 | 4_3:+1882554 | None:intergenic |
| CAAACACTTTATAGCCTCAA+TGG | 0.405480 | 4_3:-1883830 | Msa0624050:CDS |
| TGTTATTGCTTGGGGATTCA+AGG | 0.409886 | 4_3:-1883804 | Msa0624050:CDS |
| AACATTACCTTCTGGTGACC+TGG | 0.416189 | 4_3:+1884727 | None:intergenic |
| ATCTCAGTGCCTCCACAATC+TGG | 0.419190 | 4_3:-1883866 | Msa0624050:CDS |
| GCCAAACCCAAGATTCATAA+AGG | 0.423787 | 4_3:-1884125 | Msa0624050:CDS |
| TACAATATGAAATTCACAAT+TGG | 0.427534 | 4_3:-1882427 | Msa0624050:CDS |
| GACCTTGATGGTTTGGGAGA+TGG | 0.428706 | 4_3:+1883958 | None:intergenic |
| ATAAAGGAAACAAGACTCAT+TGG | 0.440193 | 4_3:-1884109 | Msa0624050:CDS |
| AGACCATTGATTTCCCATTT+GGG | 0.443676 | 4_3:+1884073 | None:intergenic |
| TTCCAAGTGCCATTTGGAAA+AGG | 0.444677 | 4_3:-1882520 | Msa0624050:CDS |
| AAAACATTCACTTCCCAAAT+GGG | 0.451562 | 4_3:-1884086 | Msa0624050:CDS |
| CATTGTTCATTACCTCTTGT+CGG | 0.452200 | 4_3:+1883671 | None:intergenic |
| ACAAGATCTTGTTGCTTTGG+AGG | 0.453040 | 4_3:+1882607 | None:intergenic |
| AAGAACATGCCTCCAGGTTG+TGG | 0.457371 | 4_3:+1884028 | None:intergenic |
| CCTTTCAAATCTTTAGGAAA+GGG | 0.458801 | 4_3:-1882334 | Msa0624050:CDS |
| GTAGGATCTTCTTGCATACC+AGG | 0.469875 | 4_3:+1883746 | None:intergenic |
| AGAAGGAGAGTCTAAGCAAC+AGG | 0.470064 | 4_3:+1882172 | None:intergenic |
| TTACCTCTTGTCGGCATCGG+AGG | 0.472016 | 4_3:+1883680 | None:intergenic |
| ATCTCTGGAGGTCCACAACC+TGG | 0.483993 | 4_3:-1884040 | Msa0624050:CDS |
| TCATTACCTCTTGTCGGCAT+CGG | 0.487489 | 4_3:+1883677 | None:intergenic |
| GCATGAACTCCATGTGACAC+TGG | 0.490852 | 4_3:+1884004 | None:intergenic |
| GGTCTAGTAGAATATATCTC+TGG | 0.497686 | 4_3:-1884055 | Msa0624050:CDS |
| ATGAAATTCACAATTGGAGA+TGG | 0.502014 | 4_3:-1882421 | Msa0624050:CDS |
| AATGGACCCTCTTCAAAGCC+AGG | 0.508731 | 4_3:+1882664 | None:intergenic |
| TCCTTTCAAATCTTTAGGAA+AGG | 0.509600 | 4_3:-1882335 | Msa0624050:CDS |
| AGTGGAGCTTGTTGCAGGTA+GGG | 0.513407 | 4_3:-1882494 | Msa0624050:CDS |
| AAGAAACCCTGGCTTTGAAG+AGG | 0.516304 | 4_3:-1882671 | Msa0624050:CDS |
| CAAACCATCAAGGTCAAACC+TGG | 0.519771 | 4_3:-1883950 | Msa0624050:CDS |
| TCAATAATCCAGCCAGGGAG+TGG | 0.521095 | 4_3:+1882580 | None:intergenic |
| ATTCTCTGCAGTCATGCAAA+AGG | 0.521317 | 4_3:-1883635 | Msa0624050:intron |
| AGGGATTCAATAATCCAGCC+AGG | 0.524844 | 4_3:+1882574 | None:intergenic |
| ATAGCTCTTTCTATCATACA+AGG | 0.527718 | 4_3:-1882249 | Msa0624050:CDS |
| GATAATTTGGTAAGAAACCC+TGG | 0.527834 | 4_3:-1882682 | Msa0624050:CDS |
| GGAGTTCATGCAGTTAGACT+TGG | 0.527950 | 4_3:-1883992 | Msa0624050:CDS |
| TCAAGGTCAAACCTGGTCAA+TGG | 0.528995 | 4_3:-1883943 | Msa0624050:CDS |
| CCCTTTCCTAAAGATTTGAA+AGG | 0.532370 | 4_3:+1882334 | None:intergenic |
| AATGGTGATGTTATTGCTTG+GGG | 0.532837 | 4_3:-1883812 | Msa0624050:CDS |
| GCTATAACTTGATCAAGGAC+AGG | 0.534900 | 4_3:+1882199 | None:intergenic |
| CTTCCCAAATGGGAAATCAA+TGG | 0.542169 | 4_3:-1884076 | Msa0624050:CDS |
| GATCTTGTGTCACCACTCCC+TGG | 0.543570 | 4_3:-1882592 | Msa0624050:CDS |
| TACCTCTTGTCGGCATCGGA+GGG | 0.555604 | 4_3:+1883681 | None:intergenic |
| GTTGTGTTGAAAATAGGGAA+TGG | 0.558649 | 4_3:+1882646 | None:intergenic |
| CTCCATCTCCCAAACCATCA+AGG | 0.560309 | 4_3:-1883960 | Msa0624050:CDS |
| ATAGCAACAGCATCCAAAAG+TGG | 0.564034 | 4_3:+1883716 | None:intergenic |
| ACTGGGAAGAACATGCCTCC+AGG | 0.567603 | 4_3:+1884022 | None:intergenic |
| CTCTAATATTAGGAGCGTCT+AGG | 0.567931 | 4_3:-1883916 | Msa0624050:CDS |
| CATGAACTCCATGTGACACT+GGG | 0.571284 | 4_3:+1884005 | None:intergenic |
| GTGATGCTATAACTTGATCA+AGG | 0.574591 | 4_3:+1882194 | None:intergenic |
| ATTAGAGCATACCATTGACC+AGG | 0.578535 | 4_3:+1883932 | None:intergenic |
| TCAATGGTGATGTTATTGCT+TGG | 0.581184 | 4_3:-1883814 | Msa0624050:CDS |
| TACCCTCCGATGCCGACAAG+AGG | 0.581876 | 4_3:-1883683 | Msa0624050:CDS |
| ACATTACCTTCTGGTGACCT+GGG | 0.583918 | 4_3:+1884728 | None:intergenic |
| TGTTCTTAGAATTTGTGCAA+TGG | 0.591903 | 4_3:+1882465 | None:intergenic |
| CAGTGGAGCTTGTTGCAGGT+AGG | 0.597409 | 4_3:-1882495 | Msa0624050:CDS |
| AGGCTATAAAGTGTTTGCAA+AGG | 0.598543 | 4_3:+1883836 | None:intergenic |
| GCCATTTGGAAAAGGAGCAG+TGG | 0.599196 | 4_3:-1882512 | Msa0624050:CDS |
| CTTGATGGTTTGGGAGATGG+AGG | 0.600334 | 4_3:+1883961 | None:intergenic |
| ATGGACCCTCTTCAAAGCCA+GGG | 0.606005 | 4_3:+1882665 | None:intergenic |
| AGAAACCCTGGCTTTGAAGA+GGG | 0.606940 | 4_3:-1882670 | Msa0624050:CDS |
| TATTTGCTAATGTTCATCCC+AGG | 0.608084 | 4_3:-1884745 | Msa0624050:CDS |
| AAGCAATAACATCACCATTG+AGG | 0.621145 | 4_3:+1883816 | None:intergenic |
| ATGTTCTTCCCAGTGTCACA+TGG | 0.627696 | 4_3:-1884013 | Msa0624050:CDS |
| AAAGTTACATTCCATAACCC+TGG | 0.629174 | 4_3:-1883764 | Msa0624050:CDS |
| CTATAACTTGATCAAGGACA+GGG | 0.632443 | 4_3:+1882200 | None:intergenic |
| CTAGTAGAATATATCTCTGG+AGG | 0.635119 | 4_3:-1884052 | Msa0624050:CDS |
| TCCAAAAGTGGACCACAAGT+AGG | 0.642666 | 4_3:+1883728 | None:intergenic |
| TAGGATCTTCTTGCATACCA+GGG | 0.643241 | 4_3:+1883747 | None:intergenic |
| GATGATATTGGATCTATGTG+TGG | 0.643357 | 4_3:-1882223 | Msa0624050:CDS |
| AAAGGAACATCACCAGATTG+TGG | 0.644013 | 4_3:+1883854 | None:intergenic |
| TGGTTGTCATGGATCAATGA+TGG | 0.645175 | 4_3:-1882392 | Msa0624050:CDS |
| ATGCAAGAAGATCCTACTTG+TGG | 0.646402 | 4_3:-1883740 | Msa0624050:CDS |
| GTTCATCCCAGGTCACCAGA+AGG | 0.652959 | 4_3:-1884734 | Msa0624050:intron |
| GGGATTCAATAATCCAGCCA+GGG | 0.660484 | 4_3:+1882575 | None:intergenic |
| TCTGGAGGTCCACAACCTGG+AGG | 0.689197 | 4_3:-1884037 | Msa0624050:CDS |
| GGAACATCACCAGATTGTGG+AGG | 0.701281 | 4_3:+1883857 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTCTTTTTTTTTTTG+TGG | + | chr4_3:1883866-1883885 | None:intergenic | 10.0% |
| !! | GTTATGTACAAAAAATATAT+TGG | + | chr4_3:1882758-1882777 | None:intergenic | 15.0% |
| !!! | ATTAAGTGCTTAATTTTTAT+AGG | - | chr4_3:1883983-1884002 | Msa0624050:CDS | 15.0% |
| !!! | CTTGATAATTTTTTGAAAAT+TGG | + | chr4_3:1884250-1884269 | None:intergenic | 15.0% |
| !! | CTTTGAATCAATAAATTTAA+TGG | + | chr4_3:1884438-1884457 | None:intergenic | 15.0% |
| !! | GTACAAAAAATATATTGGAA+AGG | + | chr4_3:1882753-1882772 | None:intergenic | 20.0% |
| !! | TAAGGGAAAAACAAAAAATA+GGG | + | chr4_3:1882802-1882821 | None:intergenic | 20.0% |
| !! | TTAAGGGAAAAACAAAAAAT+AGG | + | chr4_3:1882803-1882822 | None:intergenic | 20.0% |
| !!! | ATTTTGGAAGTAAACTTTAA+GGG | + | chr4_3:1882819-1882838 | None:intergenic | 20.0% |
| !! | TTAAAGTTTACTTCCAAAAT+GGG | - | chr4_3:1882819-1882838 | Msa0624050:intron | 20.0% |
| !! | CTAAATAATATTTCATGTAG+AGG | + | chr4_3:1883490-1883509 | None:intergenic | 20.0% |
| !!! | TTTTCTTTTTTTTTTTGTGG+TGG | + | chr4_3:1883863-1883882 | None:intergenic | 20.0% |
| !! | ATTTCCCTCAAAAAAAATAA+CGG | - | chr4_3:1883937-1883956 | Msa0624050:CDS | 20.0% |
| !!! | AATTCCGTTATTTTTTTTGA+GGG | + | chr4_3:1883944-1883963 | None:intergenic | 20.0% |
| !!! | TAATTCCGTTATTTTTTTTG+AGG | + | chr4_3:1883945-1883964 | None:intergenic | 20.0% |
| !!! | ATTAAGCACTTAATTTTCAA+AGG | + | chr4_3:1883977-1883996 | None:intergenic | 20.0% |
| !!! | TAAATAGAGCAATTTTGAAT+TGG | + | chr4_3:1884107-1884126 | None:intergenic | 20.0% |
| !! | AATTCAAAATTGCTCTATTT+AGG | - | chr4_3:1884106-1884125 | Msa0624050:CDS | 20.0% |
| !! | AATTAACCTATTTACTTTCT+TGG | - | chr4_3:1884196-1884215 | Msa0624050:intron | 20.0% |
| !! | ATTAACCTATTTACTTTCTT+GGG | - | chr4_3:1884197-1884216 | Msa0624050:intron | 20.0% |
| !!! | AATAAATTTAATGGCTTTGA+GGG | + | chr4_3:1884429-1884448 | None:intergenic | 20.0% |
| !! | TACAATATGAAATTCACAAT+TGG | - | chr4_3:1884554-1884573 | Msa0624050:intron | 20.0% |
| ! | TACCAGTAACAAATATGAAT+TGG | + | chr4_3:1882294-1882313 | None:intergenic | 25.0% |
| ! | TTGTAAGTTTAGCAAAATCA+TGG | - | chr4_3:1882611-1882630 | Msa0624050:CDS | 25.0% |
| ! | AATGTCTTGAATATTATGCT+TGG | + | chr4_3:1882725-1882744 | None:intergenic | 25.0% |
| ! | GATCAGAAATTCAGAATATA+AGG | + | chr4_3:1882780-1882799 | None:intergenic | 25.0% |
| !!! | CATTTTGGAAGTAAACTTTA+AGG | + | chr4_3:1882820-1882839 | None:intergenic | 25.0% |
| ! | CTTAAAGTTTACTTCCAAAA+TGG | - | chr4_3:1882818-1882837 | Msa0624050:intron | 25.0% |
| ! | TTGTTTCCTTTATGAATCTT+GGG | + | chr4_3:1882865-1882884 | None:intergenic | 25.0% |
| ! | TAATGTTGAATTGTTGTGAT+TGG | - | chr4_3:1883401-1883420 | Msa0624050:intron | 25.0% |
| ! | AATACTGTTGAAGATTATGA+TGG | - | chr4_3:1883586-1883605 | Msa0624050:intron | 25.0% |
| ! | ATACTGTTGAAGATTATGAT+GGG | - | chr4_3:1883587-1883606 | Msa0624050:intron | 25.0% |
| ! | AGTGATAAGTACAAAAAAAC+TGG | + | chr4_3:1883644-1883663 | None:intergenic | 25.0% |
| !!! | ACATGACCCATTTTTATATA+AGG | - | chr4_3:1884161-1884180 | Msa0624050:intron | 25.0% |
| ! | GTAGCTCCTTATATAAAAAT+GGG | + | chr4_3:1884170-1884189 | None:intergenic | 25.0% |
| ! | TGTAGCTCCTTATATAAAAA+TGG | + | chr4_3:1884171-1884190 | None:intergenic | 25.0% |
| ! | ACCAAATTATCTGCAAATAT+AGG | + | chr4_3:1884290-1884309 | None:intergenic | 25.0% |
| !!! | CATTTGTTGTGTTGAAAATA+GGG | + | chr4_3:1884343-1884362 | None:intergenic | 25.0% |
| !! | CAATAAATTTAATGGCTTTG+AGG | + | chr4_3:1884430-1884449 | None:intergenic | 25.0% |
| ! | TTCATATTGTAGACTTTGTT+TGG | + | chr4_3:1884545-1884564 | None:intergenic | 25.0% |
| ! | AAAGTTCCTTTCAAATCTTT+AGG | - | chr4_3:1884641-1884660 | Msa0624050:intron | 25.0% |
| ! | TGCCAATTCATATTTGTTAC+TGG | - | chr4_3:1882289-1882308 | Msa0624050:CDS | 30.0% |
| CAATGTAATCAGATTTGTGA+CGG | + | chr4_3:1882491-1882510 | None:intergenic | 30.0% | |
| TAAGTTTAGCAAAATCATGG+TGG | - | chr4_3:1882614-1882633 | Msa0624050:CDS | 30.0% | |
| ! | AGTTTTTGCCAAAATGATAG+TGG | - | chr4_3:1882667-1882686 | Msa0624050:CDS | 30.0% |
| CTTGAATATTATGCTTGGAT+TGG | + | chr4_3:1882720-1882739 | None:intergenic | 30.0% | |
| CTTGTTTCCTTTATGAATCT+TGG | + | chr4_3:1882866-1882885 | None:intergenic | 30.0% | |
| ATAAAGGAAACAAGACTCAT+TGG | - | chr4_3:1882872-1882891 | Msa0624050:intron | 30.0% | |
| AAAACATTCACTTCCCAAAT+GGG | - | chr4_3:1882895-1882914 | Msa0624050:intron | 30.0% | |
| CAATGGTATGCTCTAATATT+AGG | - | chr4_3:1883055-1883074 | Msa0624050:intron | 30.0% | |
| ATGAACAATGTCCATTTATC+TGG | - | chr4_3:1883323-1883342 | Msa0624050:intron | 30.0% | |
| CGAATAGAGTGTATTAACAT+TGG | - | chr4_3:1883549-1883568 | Msa0624050:intron | 30.0% | |
| ATAAGTACAAAAAAACTGGC+GGG | + | chr4_3:1883640-1883659 | None:intergenic | 30.0% | |
| GATAAGTACAAAAAAACTGG+CGG | + | chr4_3:1883641-1883660 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTTTTGTGGTGGTC+GGG | + | chr4_3:1883858-1883877 | None:intergenic | 30.0% |
| !!! | CTTTTTTTTTTTGTGGTGGT+CGG | + | chr4_3:1883859-1883878 | None:intergenic | 30.0% |
| GCCTATATTTGCAGATAATT+TGG | - | chr4_3:1884286-1884305 | Msa0624050:intron | 30.0% | |
| !! | CCATTTGTTGTGTTGAAAAT+AGG | + | chr4_3:1884344-1884363 | None:intergenic | 30.0% |
| ! | CCTATTTTCAACACAACAAA+TGG | - | chr4_3:1884341-1884360 | Msa0624050:intron | 30.0% |
| TGTTCTTAGAATTTGTGCAA+TGG | + | chr4_3:1884519-1884538 | None:intergenic | 30.0% | |
| ATGAAATTCACAATTGGAGA+TGG | - | chr4_3:1884560-1884579 | Msa0624050:intron | 30.0% | |
| ACAATTGGAGATGGAAAAAA+TGG | - | chr4_3:1884569-1884588 | Msa0624050:intron | 30.0% | |
| ! | TCCTTTCAAATCTTTAGGAA+AGG | - | chr4_3:1884646-1884665 | Msa0624050:intron | 30.0% |
| ! | CCTTTCAAATCTTTAGGAAA+GGG | - | chr4_3:1884647-1884666 | Msa0624050:intron | 30.0% |
| ATAGCTCTTTCTATCATACA+AGG | - | chr4_3:1884732-1884751 | Msa0624050:intron | 30.0% | |
| ! | CATACAAGGATTGATGATAT+TGG | - | chr4_3:1884746-1884765 | Msa0624050:CDS | 30.0% |
| ! | TATTTGCTAATGTTCATCCC+AGG | - | chr4_3:1882236-1882255 | Msa0624050:CDS | 35.0% |
| TAGAGTTGAACATTACCTTC+TGG | + | chr4_3:1882265-1882284 | None:intergenic | 35.0% | |
| ACACTTCATATCAGACATGT+CGG | - | chr4_3:1882445-1882464 | Msa0624050:CDS | 35.0% | |
| ! | ACAGTGAACCACTATCATTT+TGG | + | chr4_3:1882678-1882697 | None:intergenic | 35.0% |
| ! | GAATATTATGCTTGGATTGG+AGG | + | chr4_3:1882717-1882736 | None:intergenic | 35.0% |
| ! | TCTCTTCAAAGTTCCCATTT+TGG | + | chr4_3:1882835-1882854 | None:intergenic | 35.0% |
| TCCTTTATGAATCTTGGGTT+TGG | + | chr4_3:1882860-1882879 | None:intergenic | 35.0% | |
| GAAAACATTCACTTCCCAAA+TGG | - | chr4_3:1882894-1882913 | Msa0624050:intron | 35.0% | |
| !! | AGACCATTGATTTCCCATTT+GGG | + | chr4_3:1882911-1882930 | None:intergenic | 35.0% |
| !! | TAGACCATTGATTTCCCATT+TGG | + | chr4_3:1882912-1882931 | None:intergenic | 35.0% |
| GGTCTAGTAGAATATATCTC+TGG | - | chr4_3:1882926-1882945 | Msa0624050:intron | 35.0% | |
| CTAGTAGAATATATCTCTGG+AGG | - | chr4_3:1882929-1882948 | Msa0624050:intron | 35.0% | |
| ! | AGGCTATAAAGTGTTTGCAA+AGG | + | chr4_3:1883148-1883167 | None:intergenic | 35.0% |
| CAAACACTTTATAGCCTCAA+TGG | - | chr4_3:1883151-1883170 | Msa0624050:intron | 35.0% | |
| AAGCAATAACATCACCATTG+AGG | + | chr4_3:1883168-1883187 | None:intergenic | 35.0% | |
| ! | TCAATGGTGATGTTATTGCT+TGG | - | chr4_3:1883167-1883186 | Msa0624050:intron | 35.0% |
| ! | CAATGGTGATGTTATTGCTT+GGG | - | chr4_3:1883168-1883187 | Msa0624050:intron | 35.0% |
| ! | AATGGTGATGTTATTGCTTG+GGG | - | chr4_3:1883169-1883188 | Msa0624050:intron | 35.0% |
| AAAGTTACATTCCATAACCC+TGG | - | chr4_3:1883217-1883236 | Msa0624050:intron | 35.0% | |
| CATTGTTCATTACCTCTTGT+CGG | + | chr4_3:1883313-1883332 | None:intergenic | 35.0% | |
| !! | ACAAGCTGATTTGTTGAGAT+TGG | + | chr4_3:1883378-1883397 | None:intergenic | 35.0% |
| !!! | TTTTTTTTTTGTGGTGGTCG+GGG | + | chr4_3:1883857-1883876 | None:intergenic | 35.0% |
| GACTTCCCAAGAAAGTAAAT+AGG | + | chr4_3:1884205-1884224 | None:intergenic | 35.0% | |
| GATAATTTGGTAAGAAACCC+TGG | - | chr4_3:1884299-1884318 | Msa0624050:intron | 35.0% | |
| GTTGTGTTGAAAATAGGGAA+TGG | + | chr4_3:1884338-1884357 | None:intergenic | 35.0% | |
| ! | AAGAATTTCCAAGTGCCATT+TGG | - | chr4_3:1884455-1884474 | Msa0624050:intron | 35.0% |
| GATGGAAAAAATGGTTGTCA+TGG | - | chr4_3:1884578-1884597 | Msa0624050:intron | 35.0% | |
| CCCTTTCCTAAAGATTTGAA+AGG | + | chr4_3:1884650-1884669 | None:intergenic | 35.0% | |
| GATGATATTGGATCTATGTG+TGG | - | chr4_3:1884758-1884777 | Msa0624050:CDS | 35.0% | |
| CTATAACTTGATCAAGGACA+GGG | + | chr4_3:1884784-1884803 | None:intergenic | 35.0% | |
| GTGATGCTATAACTTGATCA+AGG | + | chr4_3:1884790-1884809 | None:intergenic | 35.0% | |
| GCCAAACCCAAGATTCATAA+AGG | - | chr4_3:1882856-1882875 | Msa0624050:intron | 40.0% | |
| CTTCCCAAATGGGAAATCAA+TGG | - | chr4_3:1882905-1882924 | Msa0624050:intron | 40.0% | |
| ! | AGGTTTGACCTTGATGGTTT+GGG | + | chr4_3:1883032-1883051 | None:intergenic | 40.0% |
| ATTAGAGCATACCATTGACC+AGG | + | chr4_3:1883052-1883071 | None:intergenic | 40.0% | |
| !! | CTCTAATATTAGGAGCGTCT+AGG | - | chr4_3:1883065-1883084 | Msa0624050:intron | 40.0% |
| AAAGGAACATCACCAGATTG+TGG | + | chr4_3:1883130-1883149 | None:intergenic | 40.0% | |
| TGTTATTGCTTGGGGATTCA+AGG | - | chr4_3:1883177-1883196 | Msa0624050:intron | 40.0% | |
| TAGGATCTTCTTGCATACCA+GGG | + | chr4_3:1883237-1883256 | None:intergenic | 40.0% | |
| ATGCAAGAAGATCCTACTTG+TGG | - | chr4_3:1883241-1883260 | Msa0624050:intron | 40.0% | |
| ATAGCAACAGCATCCAAAAG+TGG | + | chr4_3:1883268-1883287 | None:intergenic | 40.0% | |
| CTGCAGAGAATCCAGATAAA+TGG | + | chr4_3:1883337-1883356 | None:intergenic | 40.0% | |
| ATTCTCTGCAGTCATGCAAA+AGG | - | chr4_3:1883346-1883365 | Msa0624050:intron | 40.0% | |
| ! | TGAGCTTATCTCAGTTGGTA+AGG | - | chr4_3:1883818-1883837 | Msa0624050:CDS | 40.0% |
| TTGCTTAACATGTGCCCTAA+GGG | - | chr4_3:1884129-1884148 | Msa0624050:CDS | 40.0% | |
| !! | CATGTTAACTTGTGCCCTTA+GGG | + | chr4_3:1884146-1884165 | None:intergenic | 40.0% |
| !! | TCATGTTAACTTGTGCCCTT+AGG | + | chr4_3:1884147-1884166 | None:intergenic | 40.0% |
| !! | ACAAGATCTTGTTGCTTTGG+AGG | + | chr4_3:1884377-1884396 | None:intergenic | 40.0% |
| ! | GACACAAGATCTTGTTGCTT+TGG | + | chr4_3:1884380-1884399 | None:intergenic | 40.0% |
| !! | TTCCAAGTGCCATTTGGAAA+AGG | - | chr4_3:1884461-1884480 | Msa0624050:intron | 40.0% |
| TGGTTGTCATGGATCAATGA+TGG | - | chr4_3:1884589-1884608 | Msa0624050:intron | 40.0% | |
| GCTATAACTTGATCAAGGAC+AGG | + | chr4_3:1884785-1884804 | None:intergenic | 40.0% | |
| ACATTACCTTCTGGTGACCT+GGG | + | chr4_3:1882256-1882275 | None:intergenic | 45.0% | |
| AACATTACCTTCTGGTGACC+TGG | + | chr4_3:1882257-1882276 | None:intergenic | 45.0% | |
| ! | ATGAAGTGTTCGTGCTACAG+AGG | + | chr4_3:1882434-1882453 | None:intergenic | 45.0% |
| ATGTTCTTCCCAGTGTCACA+TGG | - | chr4_3:1882968-1882987 | Msa0624050:intron | 45.0% | |
| CATGAACTCCATGTGACACT+GGG | + | chr4_3:1882979-1882998 | None:intergenic | 45.0% | |
| GGAGTTCATGCAGTTAGACT+TGG | - | chr4_3:1882989-1883008 | Msa0624050:intron | 45.0% | |
| ! | CAGGTTTGACCTTGATGGTT+TGG | + | chr4_3:1883033-1883052 | None:intergenic | 45.0% |
| CAAACCATCAAGGTCAAACC+TGG | - | chr4_3:1883031-1883050 | Msa0624050:intron | 45.0% | |
| TTGACCAGGTTTGACCTTGA+TGG | + | chr4_3:1883038-1883057 | None:intergenic | 45.0% | |
| TCAAGGTCAAACCTGGTCAA+TGG | - | chr4_3:1883038-1883057 | Msa0624050:intron | 45.0% | |
| CTTCTTGCATACCAGGGTTA+TGG | + | chr4_3:1883231-1883250 | None:intergenic | 45.0% | |
| GTAGGATCTTCTTGCATACC+AGG | + | chr4_3:1883238-1883257 | None:intergenic | 45.0% | |
| ! | TCCTACTTGTGGTCCACTTT+TGG | - | chr4_3:1883252-1883271 | Msa0624050:intron | 45.0% |
| TCCAAAAGTGGACCACAAGT+AGG | + | chr4_3:1883256-1883275 | None:intergenic | 45.0% | |
| TCATTACCTCTTGTCGGCAT+CGG | + | chr4_3:1883307-1883326 | None:intergenic | 45.0% | |
| CCAACTGAGATAAGCTCATG+AGG | + | chr4_3:1883816-1883835 | None:intergenic | 45.0% | |
| CCTCATGAGCTTATCTCAGT+TGG | - | chr4_3:1883813-1883832 | Msa0624050:CDS | 45.0% | |
| GTTGCTTAACATGTGCCCTA+AGG | - | chr4_3:1884128-1884147 | Msa0624050:CDS | 45.0% | |
| !! | AAGAAACCCTGGCTTTGAAG+AGG | - | chr4_3:1884310-1884329 | Msa0624050:intron | 45.0% |
| !! | AGAAACCCTGGCTTTGAAGA+GGG | - | chr4_3:1884311-1884330 | Msa0624050:intron | 45.0% |
| GGGATTCAATAATCCAGCCA+GGG | + | chr4_3:1884409-1884428 | None:intergenic | 45.0% | |
| AGGGATTCAATAATCCAGCC+AGG | + | chr4_3:1884410-1884429 | None:intergenic | 45.0% | |
| ! | CTCCTTTTCCAAATGGCACT+TGG | + | chr4_3:1884466-1884485 | None:intergenic | 45.0% |
| ! | TCCACTGCTCCTTTTCCAAA+TGG | + | chr4_3:1884473-1884492 | None:intergenic | 45.0% |
| AGAAGGAGAGTCTAAGCAAC+AGG | + | chr4_3:1884812-1884831 | None:intergenic | 45.0% | |
| !!! | TATTTTTTTCAAATTATTAT+TGG | - | chr4_3:1882519-1882538 | Msa0624050:CDS | 5.0% |
| !! | AAAAAAATAATAAATAGTTA+AGG | - | chr4_3:1883765-1883784 | Msa0624050:CDS | 5.0% |
| !! | AAAAAATAATAAATAGTTAA+GGG | - | chr4_3:1883766-1883785 | Msa0624050:CDS | 5.0% |
| AGACATGTCAGTGTCGTGTC+TGG | - | chr4_3:1882545-1882564 | Msa0624050:CDS | 50.0% | |
| AAGAACATGCCTCCAGGTTG+TGG | + | chr4_3:1882956-1882975 | None:intergenic | 50.0% | |
| GCATGAACTCCATGTGACAC+TGG | + | chr4_3:1882980-1882999 | None:intergenic | 50.0% | |
| ! | CTTGATGGTTTGGGAGATGG+AGG | + | chr4_3:1883023-1883042 | None:intergenic | 50.0% |
| CTCCATCTCCCAAACCATCA+AGG | - | chr4_3:1883021-1883040 | Msa0624050:intron | 50.0% | |
| ! | GACCTTGATGGTTTGGGAGA+TGG | + | chr4_3:1883026-1883045 | None:intergenic | 50.0% |
| ATCTCAGTGCCTCCACAATC+TGG | - | chr4_3:1883115-1883134 | Msa0624050:intron | 50.0% | |
| GGAACATCACCAGATTGTGG+AGG | + | chr4_3:1883127-1883146 | None:intergenic | 50.0% | |
| ATGGACCCTCTTCAAAGCCA+GGG | + | chr4_3:1884319-1884338 | None:intergenic | 50.0% | |
| AATGGACCCTCTTCAAAGCC+AGG | + | chr4_3:1884320-1884339 | None:intergenic | 50.0% | |
| TCAATAATCCAGCCAGGGAG+TGG | + | chr4_3:1884404-1884423 | None:intergenic | 50.0% | |
| GCCATTTGGAAAAGGAGCAG+TGG | - | chr4_3:1884469-1884488 | Msa0624050:intron | 50.0% | |
| !! | AGTGGAGCTTGTTGCAGGTA+GGG | - | chr4_3:1884487-1884506 | Msa0624050:intron | 50.0% |
| GTTCATCCCAGGTCACCAGA+AGG | - | chr4_3:1882247-1882266 | Msa0624050:CDS | 55.0% | |
| ! | ATCTCTGGAGGTCCACAACC+TGG | - | chr4_3:1882941-1882960 | Msa0624050:intron | 55.0% |
| ACTGGGAAGAACATGCCTCC+AGG | + | chr4_3:1882962-1882981 | None:intergenic | 55.0% | |
| ! | TACCTCTTGTCGGCATCGGA+GGG | + | chr4_3:1883303-1883322 | None:intergenic | 55.0% |
| ! | TTACCTCTTGTCGGCATCGG+AGG | + | chr4_3:1883304-1883323 | None:intergenic | 55.0% |
| GATCTTGTGTCACCACTCCC+TGG | - | chr4_3:1884389-1884408 | Msa0624050:intron | 55.0% | |
| !! | CAGTGGAGCTTGTTGCAGGT+AGG | - | chr4_3:1884486-1884505 | Msa0624050:intron | 55.0% |
| TCTGGAGGTCCACAACCTGG+AGG | - | chr4_3:1882944-1882963 | Msa0624050:intron | 60.0% | |
| TACCCTCCGATGCCGACAAG+AGG | - | chr4_3:1883298-1883317 | Msa0624050:intron | 60.0% | |
| TTGTGTCACCACTCCCTGGC+TGG | - | chr4_3:1884393-1884412 | Msa0624050:intron | 60.0% | |
| !! | GGAGCAGTGGAGCTTGTTGC+AGG | - | chr4_3:1884482-1884501 | Msa0624050:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 1882172 | 1884831 | 1882172 | ID=Msa0624050;Name=Msa0624050 |
| chr4_3 | mRNA | 1882172 | 1884831 | 1882172 | ID=Msa0624050-mRNA-1;Parent=Msa0624050;Name=Msa0624050-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0.33|1|1|1|3|11|386 |
| chr4_3 | exon | 1882172 | 1882703 | 1882172 | ID=Msa0624050-mRNA-1:exon:508;Parent=Msa0624050-mRNA-1 |
| chr4_3 | exon | 1883636 | 1884178 | 1883636 | ID=Msa0624050-mRNA-1:exon:507;Parent=Msa0624050-mRNA-1 |
| chr4_3 | exon | 1884735 | 1884831 | 1884735 | ID=Msa0624050-mRNA-1:exon:506;Parent=Msa0624050-mRNA-1 |
| chr4_3 | CDS | 1884735 | 1884831 | 1884735 | ID=Msa0624050-mRNA-1:cds;Parent=Msa0624050-mRNA-1 |
| chr4_3 | CDS | 1883636 | 1884178 | 1883636 | ID=Msa0624050-mRNA-1:cds;Parent=Msa0624050-mRNA-1 |
| chr4_3 | CDS | 1882183 | 1882703 | 1882183 | ID=Msa0624050-mRNA-1:cds;Parent=Msa0624050-mRNA-1 |
| chr4_3 | three_prime_UTR | 1882172 | 1882182 | 1882172 | ID=Msa0624050-mRNA-1:three_prime_utr;Parent=Msa0624050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
