Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0164720 | KEH38070.1 | 100.000 | 173 | 0 | 0 | 1 | 173 | 74 | 246 | 1.80e-122 | 355 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0164720 | sp|Q6K669|AMPL2_ORYSJ | 88.439 | 173 | 20 | 0 | 1 | 173 | 426 | 598 | 9.09e-110 | 328 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0164720 | A0A072VIT3 | 100.000 | 173 | 0 | 0 | 1 | 173 | 74 | 246 | 8.60e-123 | 355 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024320 | Msa0164720 | 0.800836 | 1.195426e-48 | -8.615850e-47 |
| Msa0064310 | Msa0164720 | 0.803829 | 2.892164e-49 | -8.615850e-47 |
| Msa0067370 | Msa0164720 | 0.810347 | 1.206187e-50 | -8.615850e-47 |
| Msa0067750 | Msa0164720 | 0.817276 | 3.586267e-52 | -8.615850e-47 |
| Msa0076100 | Msa0164720 | 0.805664 | 1.197014e-49 | -8.615850e-47 |
| Msa0133390 | Msa0164720 | 0.806442 | 8.209604e-50 | -8.615850e-47 |
| Msa0163400 | Msa0164720 | 0.804004 | 2.659650e-49 | -8.615850e-47 |
| Msa0164580 | Msa0164720 | 0.806962 | 6.376379e-50 | -8.615850e-47 |
| Msa0164720 | Msa0181560 | 0.805521 | 1.282229e-49 | -8.615850e-47 |
| Msa0164720 | Msa0184800 | 0.803577 | 3.262791e-49 | -8.615850e-47 |
| Msa0164720 | Msa0184900 | 0.809402 | 1.926131e-50 | -8.615850e-47 |
| Msa0164720 | Msa0234400 | 0.964521 | 1.972113e-123 | -8.615850e-47 |
| Msa0164720 | Msa0318280 | 0.812838 | 3.465830e-51 | -8.615850e-47 |
| Msa0164720 | Msa0318320 | 0.808946 | 2.412083e-50 | -8.615850e-47 |
| Msa0164720 | Msa0326630 | 0.807737 | 4.367528e-50 | -8.615850e-47 |
| Msa0164720 | Msa0389890 | 0.808995 | 2.354391e-50 | -8.615850e-47 |
| Msa0164720 | Msa0554700 | 0.820434 | 6.872292e-53 | -8.615850e-47 |
| Msa0164720 | Msa0659360 | 0.805873 | 1.081883e-49 | -8.615850e-47 |
| Msa0164720 | Msa0798500 | 0.803399 | 3.552152e-49 | -8.615850e-47 |
| Msa0164720 | Msa0803220 | 0.813148 | 2.964028e-51 | -8.615850e-47 |
| Msa0164720 | Msa0929440 | 0.815397 | 9.441972e-52 | -8.615850e-47 |
| Msa0164720 | Msa0975260 | 0.808995 | 2.354391e-50 | -8.615850e-47 |
| Msa0164720 | Msa1156120 | 0.801808 | 7.559740e-49 | -8.615850e-47 |
| Msa0164720 | Msa1159420 | 0.804245 | 2.369218e-49 | -8.615850e-47 |
| Msa0164720 | Msa1161060 | 0.802530 | 5.370672e-49 | -8.615850e-47 |
| Msa0164720 | Msa1293040 | 0.810459 | 1.140821e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0164720 | MtrunA17_Chr2g0305841 | 100.000 | 173 | 0 | 0 | 1 | 173 | 411 | 583 | 6.89e-125 | 363 |
| Msa0164720 | MtrunA17_Chr4g0073971 | 84.971 | 173 | 26 | 0 | 1 | 173 | 395 | 567 | 2.91e-109 | 322 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0164720 | AT2G24200.3 | 82.659 | 173 | 30 | 0 | 1 | 173 | 311 | 483 | 3.45e-105 | 310 |
| Msa0164720 | AT2G24200.2 | 82.659 | 173 | 30 | 0 | 1 | 173 | 347 | 519 | 7.17e-105 | 310 |
| Msa0164720 | AT2G24200.1 | 82.659 | 173 | 30 | 0 | 1 | 173 | 347 | 519 | 7.17e-105 | 310 |
| Msa0164720 | AT4G30920.1 | 82.081 | 173 | 31 | 0 | 1 | 173 | 410 | 582 | 7.08e-102 | 304 |
| Msa0164720 | AT4G30910.1 | 78.035 | 173 | 38 | 0 | 1 | 173 | 409 | 581 | 4.36e-97 | 292 |
| Msa0164720 | AT4G30910.2 | 68.878 | 196 | 38 | 1 | 1 | 173 | 409 | 604 | 6.28e-92 | 279 |
Find 71 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATTTCAATAAAACAAAAT+TGG | 0.165279 | 1_4:+44499710 | Msa0164720:three_prime_UTR |
| ATTGACCTGGCAACATTAAC+TGG | 0.335424 | 1_4:+44498191 | Msa0164720:CDS |
| GAAAAGCAGCGTTGTGCAAC+TGG | 0.335946 | 1_4:+44499546 | Msa0164720:CDS |
| CAGCGTTGTGCAACTGGATT+TGG | 0.359763 | 1_4:+44499552 | Msa0164720:CDS |
| TGTATTTGTTAAGCAGCGTT+TGG | 0.360841 | 1_4:+44499662 | Msa0164720:three_prime_UTR |
| TGCCAATGGAAGAAAGTTAC+TGG | 0.367635 | 1_4:+44498886 | Msa0164720:CDS |
| TCAATGGATGCATATTGATT+TGG | 0.374105 | 1_4:+44499506 | Msa0164720:CDS |
| AATAAAACAAAATTGGGTTT+CGG | 0.376843 | 1_4:+44499717 | Msa0164720:three_prime_UTR |
| ATTTGGTGTATCAACTTTAG+TGG | 0.377388 | 1_4:+44499569 | Msa0164720:CDS |
| GCTTACTCTGGCTGATGCTC+TGG | 0.377964 | 1_4:+44497818 | Msa0164720:CDS |
| AATTTCAATAAAACAAAATT+GGG | 0.383091 | 1_4:+44499711 | Msa0164720:three_prime_UTR |
| GTATTTGTTAAGCAGCGTTT+GGG | 0.384225 | 1_4:+44499663 | Msa0164720:three_prime_UTR |
| ATGTGAGCGGGGAGAAACTA+TGG | 0.394427 | 1_4:+44498859 | Msa0164720:CDS |
| AGGACGCGCGAGAACCTCAT+AGG | 0.412273 | 1_4:-44499808 | None:intergenic |
| TACTGGGAATCAATGAAATC+AGG | 0.419927 | 1_4:+44498903 | Msa0164720:CDS |
| CTCATAATTACCTGCGATTG+AGG | 0.421437 | 1_4:-44498237 | None:intergenic |
| ATCTTCCTCCACCAATGTTA+TGG | 0.427294 | 1_4:+44496843 | Msa0164720:five_prime_UTR |
| GTGTATCAACTTTAGTGGAA+TGG | 0.429941 | 1_4:+44499574 | Msa0164720:CDS |
| TCCCAGTAACTTTCTTCCAT+TGG | 0.430091 | 1_4:-44498888 | None:intergenic |
| GAGAATATGATAAGTGGAAC+AGG | 0.431241 | 1_4:+44496936 | Msa0164720:exon |
| ACCAAATACACCAAAACAAT+CGG | 0.432353 | 1_4:-44496791 | None:intergenic |
| GCAGTTTATGCCGATTGTTT+TGG | 0.444185 | 1_4:+44496781 | Msa0164720:five_prime_UTR |
| TGTATCAACTTTAGTGGAAT+GGG | 0.444480 | 1_4:+44499575 | Msa0164720:CDS |
| TGCTGAGGGCAGGCTTACTC+TGG | 0.447381 | 1_4:+44497806 | Msa0164720:CDS |
| GGAAGCTGTGACAATGTCTC+CGG | 0.456666 | 1_4:-44496967 | None:intergenic |
| CTCCACCAATGTTATGGATA+GGG | 0.456881 | 1_4:+44496849 | Msa0164720:five_prime_UTR |
| TTTGCAGTTTGTTGACGAAA+AGG | 0.458709 | 1_4:+44499482 | Msa0164720:intron |
| TTGTAACCAAGGTGTGGATA+AGG | 0.461972 | 1_4:+44497848 | Msa0164720:CDS |
| TTCTTTAGCCAGGTCATCAC+TGG | 0.471955 | 1_4:-44498820 | None:intergenic |
| TCATAATTACCTGCGATTGA+GGG | 0.483444 | 1_4:-44498236 | None:intergenic |
| CCTCCACCAATGTTATGGAT+AGG | 0.484962 | 1_4:+44496848 | Msa0164720:five_prime_UTR |
| TTGTTGACGAAAAGGTTCAA+TGG | 0.490475 | 1_4:+44499490 | Msa0164720:CDS |
| CTTTAGTGGAATGGGTATTG+AGG | 0.496078 | 1_4:+44499583 | Msa0164720:CDS |
| ATGCACCAGTTAATGTTGCC+AGG | 0.529940 | 1_4:-44498196 | None:intergenic |
| AGCACCACCTTGACGACCAC+CGG | 0.532762 | 1_4:-44498946 | None:intergenic |
| TGATAAGTGGAACAGGTATG+AGG | 0.535456 | 1_4:+44496943 | Msa0164720:CDS |
| TTGATGCTTCTGATGTGAGC+GGG | 0.535615 | 1_4:+44498847 | Msa0164720:CDS |
| AACCCTATCCATAACATTGG+TGG | 0.545763 | 1_4:-44496851 | None:intergenic |
| GGTGCATGTATAATTGCTCT+AGG | 0.548072 | 1_4:+44498212 | Msa0164720:CDS |
| GCTCTAGGACCCTCAATCGC+AGG | 0.553111 | 1_4:+44498227 | Msa0164720:CDS |
| GAAGCTGTGACAATGTCTCC+GGG | 0.558603 | 1_4:-44496966 | None:intergenic |
| TGGATGCATATTGATTTGGC+TGG | 0.565101 | 1_4:+44499510 | Msa0164720:CDS |
| CGCGCGAGAACCTCATAGGG+TGG | 0.569254 | 1_4:-44499804 | None:intergenic |
| AGTGGAACAGGTATGAGGCC+CGG | 0.569603 | 1_4:+44496948 | Msa0164720:CDS |
| TGCATACCTTATCCACACCT+TGG | 0.582813 | 1_4:-44497854 | None:intergenic |
| GCTTGTGAGAATATGATAAG+TGG | 0.585466 | 1_4:+44496930 | Msa0164720:exon |
| ACAACACAGATGCTGAGGGC+AGG | 0.586240 | 1_4:+44497796 | Msa0164720:CDS |
| TTGAACACCGGTGGTCGTCA+AGG | 0.590796 | 1_4:+44498939 | Msa0164720:CDS |
| TCATAGGGTGGGAAAAGTAA+TGG | 0.591325 | 1_4:-44499792 | None:intergenic |
| GAAGATGCACTATACAACAT+AGG | 0.596301 | 1_4:-44496826 | None:intergenic |
| CCTATCCATAACATTGGTGG+AGG | 0.598399 | 1_4:-44496848 | None:intergenic |
| GGACGCGCGAGAACCTCATA+GGG | 0.601049 | 1_4:-44499807 | None:intergenic |
| AACAACCCTATCCATAACAT+TGG | 0.601284 | 1_4:-44496854 | None:intergenic |
| ATTTACAACCAGTGATGACC+TGG | 0.603884 | 1_4:+44498812 | Msa0164720:CDS |
| GAAACTATGGAGGATGCCAA+TGG | 0.604081 | 1_4:+44498872 | Msa0164720:CDS |
| GCGCGAGAACCTCATAGGGT+GGG | 0.605334 | 1_4:-44499803 | None:intergenic |
| GACATTGTCACAGCTTCCAA+CGG | 0.618318 | 1_4:+44496972 | Msa0164720:CDS |
| GGTTAACAACACAGATGCTG+AGG | 0.618987 | 1_4:+44497791 | Msa0164720:intron |
| TTGATTTGGCTGGTCCTGTG+TGG | 0.624990 | 1_4:+44499520 | Msa0164720:CDS |
| GCCAATGGAAGAAAGTTACT+GGG | 0.626087 | 1_4:+44498887 | Msa0164720:CDS |
| TCAAAATGTTGTGCATGTGA+AGG | 0.640371 | 1_4:+44496890 | Msa0164720:five_prime_UTR |
| TTTGATGCTTCTGATGTGAG+CGG | 0.646083 | 1_4:+44498846 | Msa0164720:CDS |
| AACACCGGTGGTCGTCAAGG+TGG | 0.652566 | 1_4:+44498942 | Msa0164720:CDS |
| GTTAACAACACAGATGCTGA+GGG | 0.671100 | 1_4:+44497792 | Msa0164720:CDS |
| TGATGCTTCTGATGTGAGCG+GGG | 0.674520 | 1_4:+44498848 | Msa0164720:CDS |
| GTATACTTGTAACCAAGGTG+TGG | 0.674878 | 1_4:+44497842 | Msa0164720:CDS |
| CTGGTGTATACTTGTAACCA+AGG | 0.676497 | 1_4:+44497837 | Msa0164720:CDS |
| TATTTGTTAAGCAGCGTTTG+GGG | 0.691488 | 1_4:+44499664 | Msa0164720:three_prime_UTR |
| TGAGCGGGGAGAAACTATGG+AGG | 0.700569 | 1_4:+44498862 | Msa0164720:CDS |
| GCTGATATGTTGAACACCGG+TGG | 0.717740 | 1_4:+44498930 | Msa0164720:CDS |
| GTTGCTGATATGTTGAACAC+CGG | 0.743602 | 1_4:+44498927 | Msa0164720:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATACTTAAAATGTATTTT+TGG | - | chr1_4:44499342-44499361 | None:intergenic | 10.0% |
| !! | AAATTTCAATAAAACAAAAT+TGG | + | chr1_4:44499710-44499729 | Msa0164720:three_prime_UTR | 10.0% |
| !! | AATTTCAATAAAACAAAATT+GGG | + | chr1_4:44499711-44499730 | Msa0164720:three_prime_UTR | 10.0% |
| !! | TCATAATTAGTAATTACATT+TGG | - | chr1_4:44497341-44497360 | None:intergenic | 15.0% |
| !!! | TATTAATTTTTGAAAAGACT+CGG | + | chr1_4:44497487-44497506 | Msa0164720:intron | 15.0% |
| !! | AATCAAGTCAAATAAAAAAA+CGG | - | chr1_4:44497521-44497540 | None:intergenic | 15.0% |
| !!! | ATATGAATGAACTAAAATTT+TGG | + | chr1_4:44497720-44497739 | Msa0164720:intron | 15.0% |
| !!! | TTTCATTTTTATTTAAGAGT+TGG | + | chr1_4:44497971-44497990 | Msa0164720:intron | 15.0% |
| !!! | ATTTTTATGTTCTAATAGTT+TGG | - | chr1_4:44498618-44498637 | None:intergenic | 15.0% |
| !! | TAAAAAATACTCAATTATAG+TGG | + | chr1_4:44498687-44498706 | Msa0164720:intron | 15.0% |
| !! | AGGGTTTATGTTTATATTTA+TGG | + | chr1_4:44497011-44497030 | Msa0164720:intron | 20.0% |
| !!! | AGTATATGAAAGTATATATC+AGG | - | chr1_4:44497213-44497232 | None:intergenic | 20.0% |
| !! | GTATGAATCAATTATTCTAA+TGG | - | chr1_4:44497282-44497301 | None:intergenic | 20.0% |
| !! | AATTATATTGTTTGTAACAG+AGG | + | chr1_4:44497372-44497391 | Msa0164720:intron | 20.0% |
| !! | TTTCAAAAATTAATACATCC+TGG | - | chr1_4:44497482-44497501 | None:intergenic | 20.0% |
| !!! | ATTAATTTTTGAAAAGACTC+GGG | + | chr1_4:44497488-44497507 | Msa0164720:intron | 20.0% |
| !! | TATCACATGTTTGATAAATT+TGG | + | chr1_4:44497938-44497957 | Msa0164720:intron | 20.0% |
| !!! | CAAAGTATAAGTTTTATGTA+TGG | + | chr1_4:44498263-44498282 | Msa0164720:intron | 20.0% |
| !!! | ATAAAGTCACATGATTTTTT+TGG | + | chr1_4:44498534-44498553 | Msa0164720:intron | 20.0% |
| !! | ACATAAAAATTGTAATCTCT+TGG | + | chr1_4:44498628-44498647 | Msa0164720:intron | 20.0% |
| !! | CATAAAAATTGTAATCTCTT+GGG | + | chr1_4:44498629-44498648 | Msa0164720:intron | 20.0% |
| !! | ATAAAAATTGTAATCTCTTG+GGG | + | chr1_4:44498630-44498649 | Msa0164720:intron | 20.0% |
| !! | CATAAACCAATAAAAGTAAA+CGG | - | chr1_4:44499282-44499301 | None:intergenic | 20.0% |
| !!! | ATTGGTTTATGTTTTCATTT+TGG | + | chr1_4:44499291-44499310 | Msa0164720:intron | 20.0% |
| !!! | AAATAGTGAGAATATCTTTT+TGG | - | chr1_4:44499365-44499384 | None:intergenic | 20.0% |
| !! | AATAAAACAAAATTGGGTTT+CGG | + | chr1_4:44499717-44499736 | Msa0164720:three_prime_UTR | 20.0% |
| !! | AGCACAAAAAAATATTGAAA+AGG | - | chr1_4:44499754-44499773 | None:intergenic | 20.0% |
| ! | AAACAAATATGATGACAGAA+AGG | + | chr1_4:44497129-44497148 | Msa0164720:intron | 25.0% |
| ! | AGTATATATCAGGTGAAATT+GGG | - | chr1_4:44497203-44497222 | None:intergenic | 25.0% |
| ! | AAGTATATATCAGGTGAAAT+TGG | - | chr1_4:44497204-44497223 | None:intergenic | 25.0% |
| ! | ACTTATACAAAAAGATGTGT+GGG | - | chr1_4:44497436-44497455 | None:intergenic | 25.0% |
| !!! | TTAATTTTTGAAAAGACTCG+GGG | + | chr1_4:44497489-44497508 | Msa0164720:intron | 25.0% |
| ! | TAATTGTAACAAACAAAGCA+AGG | - | chr1_4:44497746-44497765 | None:intergenic | 25.0% |
| ! | GAATATTAGAAAGATGTAGA+AGG | - | chr1_4:44497885-44497904 | None:intergenic | 25.0% |
| ! | TCATTCATGATTTGATCATA+TGG | - | chr1_4:44498501-44498520 | None:intergenic | 25.0% |
| ! | CAGTCATAATTATTCTTCTA+TGG | + | chr1_4:44498583-44498602 | Msa0164720:intron | 25.0% |
| ! | AATGAAACAGTTCATTGAAT+GGG | - | chr1_4:44498751-44498770 | None:intergenic | 25.0% |
| ! | AAATGAAACAGTTCATTGAA+TGG | - | chr1_4:44498752-44498771 | None:intergenic | 25.0% |
| !! | AATGCTAACTATGTTTCTAA+AGG | + | chr1_4:44498786-44498805 | Msa0164720:intron | 25.0% |
| ! | AAGATATTCTCACTATTTAG+TGG | + | chr1_4:44499367-44499386 | Msa0164720:intron | 25.0% |
| !! | TATGGTATTGAAAATGTTTC+TGG | + | chr1_4:44499415-44499434 | Msa0164720:intron | 25.0% |
| !!! | GTGCTTTTCAGTTTATTTTT+AGG | + | chr1_4:44499769-44499788 | Msa0164720:three_prime_UTR | 25.0% |
| ACCAAATACACCAAAACAAT+CGG | - | chr1_4:44496794-44496813 | None:intergenic | 30.0% | |
| TACTGTCTGATCTTATGATA+AGG | + | chr1_4:44497083-44497102 | Msa0164720:intron | 30.0% | |
| !! | ATGATAAGGTTTGTTGATAC+AGG | + | chr1_4:44497097-44497116 | Msa0164720:intron | 30.0% |
| ! | GAAATTGGGTTTAAGGTTTA+GGG | - | chr1_4:44497189-44497208 | None:intergenic | 30.0% |
| ! | TGAAATTGGGTTTAAGGTTT+AGG | - | chr1_4:44497190-44497209 | None:intergenic | 30.0% |
| GACTTATACAAAAAGATGTG+TGG | - | chr1_4:44497437-44497456 | None:intergenic | 30.0% | |
| !! | TAATTTTTGAAAAGACTCGG+GGG | + | chr1_4:44497490-44497509 | Msa0164720:intron | 30.0% |
| TAGATATGCAGTTATACACT+TGG | - | chr1_4:44497616-44497635 | None:intergenic | 30.0% | |
| ATTAGAAAGATGTAGAAGGA+TGG | - | chr1_4:44497881-44497900 | None:intergenic | 30.0% | |
| ! | ACCAATCAATCAAGACTTTT+GGG | - | chr1_4:44497907-44497926 | None:intergenic | 30.0% |
| ! | AACCAATCAATCAAGACTTT+TGG | - | chr1_4:44497908-44497927 | None:intergenic | 30.0% |
| TTTAATTCAGCAGGACAAAT+TGG | - | chr1_4:44498017-44498036 | None:intergenic | 30.0% | |
| ATTTGTCCTGCTGAATTAAA+AGG | + | chr1_4:44498017-44498036 | Msa0164720:intron | 30.0% | |
| !! | ATTCTTCCTTTTAATTCAGC+AGG | - | chr1_4:44498026-44498045 | None:intergenic | 30.0% |
| GCTGAATTAAAAGGAAGAAT+CGG | + | chr1_4:44498026-44498045 | Msa0164720:intron | 30.0% | |
| ACACAACAAATACTGACATT+TGG | + | chr1_4:44498080-44498099 | Msa0164720:intron | 30.0% | |
| !!! | AAGTCACATGATTTTTTTGG+TGG | + | chr1_4:44498537-44498556 | Msa0164720:intron | 30.0% |
| !!! | TGATTTTTTTGGTGGTCAAA+TGG | + | chr1_4:44498545-44498564 | Msa0164720:intron | 30.0% |
| !! | TTAGGACCGTTTACTTTTAT+TGG | + | chr1_4:44499273-44499292 | Msa0164720:intron | 30.0% |
| ! | TCAATGGATGCATATTGATT+TGG | + | chr1_4:44499506-44499525 | Msa0164720:CDS | 30.0% |
| !! | ATTTGGTGTATCAACTTTAG+TGG | + | chr1_4:44499569-44499588 | Msa0164720:CDS | 30.0% |
| TGTATCAACTTTAGTGGAAT+GGG | + | chr1_4:44499575-44499594 | Msa0164720:CDS | 30.0% | |
| GAAGATGCACTATACAACAT+AGG | - | chr1_4:44496829-44496848 | None:intergenic | 35.0% | |
| AACAACCCTATCCATAACAT+TGG | - | chr1_4:44496857-44496876 | None:intergenic | 35.0% | |
| ! | CATGCACAACATTTTGAACA+TGG | - | chr1_4:44496887-44496906 | None:intergenic | 35.0% |
| TCAAAATGTTGTGCATGTGA+AGG | + | chr1_4:44496890-44496909 | Msa0164720:five_prime_UTR | 35.0% | |
| GCTTGTGAGAATATGATAAG+TGG | + | chr1_4:44496930-44496949 | Msa0164720:exon | 35.0% | |
| GAGAATATGATAAGTGGAAC+AGG | + | chr1_4:44496936-44496955 | Msa0164720:exon | 35.0% | |
| TTCCAACGGAAAAACTATAG+AGG | + | chr1_4:44496986-44497005 | Msa0164720:CDS | 35.0% | |
| !! | ATAAGGTTTGTTGATACAGG+AGG | + | chr1_4:44497100-44497119 | Msa0164720:intron | 35.0% |
| !! | TAAGGTTTGTTGATACAGGA+GGG | + | chr1_4:44497101-44497120 | Msa0164720:intron | 35.0% |
| GTCAGTGTAAATAAGATCAG+TGG | - | chr1_4:44497160-44497179 | None:intergenic | 35.0% | |
| ATCAGGTGAAATTGGGTTTA+AGG | - | chr1_4:44497196-44497215 | None:intergenic | 35.0% | |
| !! | AAGCTTGACAGCATTTTAGT+AGG | - | chr1_4:44497579-44497598 | None:intergenic | 35.0% |
| TCCCAAAAGTCTTGATTGAT+TGG | + | chr1_4:44497903-44497922 | Msa0164720:intron | 35.0% | |
| ! | CCTTTTAAACAGAACTGAAC+TGG | - | chr1_4:44498056-44498075 | None:intergenic | 35.0% |
| CCAGTTCAGTTCTGTTTAAA+AGG | + | chr1_4:44498053-44498072 | Msa0164720:intron | 35.0% | |
| AAAACCATAGCAGTAGATAG+AGG | - | chr1_4:44498132-44498151 | None:intergenic | 35.0% | |
| TTAGAACTCTGCTAACAGAT+TGG | + | chr1_4:44498150-44498169 | Msa0164720:intron | 35.0% | |
| ! | TGCTTTTCAGATAATTGACC+TGG | + | chr1_4:44498178-44498197 | Msa0164720:intron | 35.0% |
| TCATAATTACCTGCGATTGA+GGG | - | chr1_4:44498239-44498258 | None:intergenic | 35.0% | |
| ! | CACGTACTAATGACACTTTT+CGG | - | chr1_4:44498306-44498325 | None:intergenic | 35.0% |
| AATCTTGACCATAGATCCAT+GGG | - | chr1_4:44498358-44498377 | None:intergenic | 35.0% | |
| TAATCTTGACCATAGATCCA+TGG | - | chr1_4:44498359-44498378 | None:intergenic | 35.0% | |
| CACCAATTCCATTTCCAATA+CGG | + | chr1_4:44498392-44498411 | Msa0164720:intron | 35.0% | |
| AACCGTATTGGAAATGGAAT+TGG | - | chr1_4:44498397-44498416 | None:intergenic | 35.0% | |
| ! | TATAGTGGCTTTTCCACTAT+TGG | + | chr1_4:44498702-44498721 | Msa0164720:intron | 35.0% |
| ! | ATAGTGGCTTTTCCACTATT+GGG | + | chr1_4:44498703-44498722 | Msa0164720:intron | 35.0% |
| TAAAACCAAAGTCCCAATAG+TGG | - | chr1_4:44498718-44498737 | None:intergenic | 35.0% | |
| CATCAAAAACTTCTTTAGCC+AGG | - | chr1_4:44498833-44498852 | None:intergenic | 35.0% | |
| TACTGGGAATCAATGAAATC+AGG | + | chr1_4:44498903-44498922 | Msa0164720:CDS | 35.0% | |
| TTATTATGTGTAGCACTACC+TGG | - | chr1_4:44499053-44499072 | None:intergenic | 35.0% | |
| ATACTATGTGCTTAGTTGCT+TGG | + | chr1_4:44499217-44499236 | Msa0164720:intron | 35.0% | |
| TACTATGTGCTTAGTTGCTT+GGG | + | chr1_4:44499218-44499237 | Msa0164720:intron | 35.0% | |
| TATCTTCTTTGTCACAGACA+TGG | + | chr1_4:44499392-44499411 | Msa0164720:intron | 35.0% | |
| !! | GGTATTGAAAATGTTTCTGG+AGG | + | chr1_4:44499418-44499437 | Msa0164720:intron | 35.0% |
| !! | TTTGCAGTTTGTTGACGAAA+AGG | + | chr1_4:44499482-44499501 | Msa0164720:intron | 35.0% |
| TTGTTGACGAAAAGGTTCAA+TGG | + | chr1_4:44499490-44499509 | Msa0164720:CDS | 35.0% | |
| GTGTATCAACTTTAGTGGAA+TGG | + | chr1_4:44499574-44499593 | Msa0164720:CDS | 35.0% | |
| ! | TGTATTTGTTAAGCAGCGTT+TGG | + | chr1_4:44499662-44499681 | Msa0164720:three_prime_UTR | 35.0% |
| ! | GTATTTGTTAAGCAGCGTTT+GGG | + | chr1_4:44499663-44499682 | Msa0164720:three_prime_UTR | 35.0% |
| ! | TATTTGTTAAGCAGCGTTTG+GGG | + | chr1_4:44499664-44499683 | Msa0164720:three_prime_UTR | 35.0% |
| !! | GCAGTTTATGCCGATTGTTT+TGG | + | chr1_4:44496781-44496800 | Msa0164720:five_prime_UTR | 40.0% |
| !!! | GCCGATTGTTTTGGTGTATT+TGG | + | chr1_4:44496790-44496809 | Msa0164720:five_prime_UTR | 40.0% |
| ATCTTCCTCCACCAATGTTA+TGG | + | chr1_4:44496843-44496862 | Msa0164720:five_prime_UTR | 40.0% | |
| CTCCACCAATGTTATGGATA+GGG | + | chr1_4:44496849-44496868 | Msa0164720:five_prime_UTR | 40.0% | |
| AACCCTATCCATAACATTGG+TGG | - | chr1_4:44496854-44496873 | None:intergenic | 40.0% | |
| TGATAAGTGGAACAGGTATG+AGG | + | chr1_4:44496943-44496962 | Msa0164720:CDS | 40.0% | |
| ! | CACCTCTATAGTTTTTCCGT+TGG | - | chr1_4:44496991-44497010 | None:intergenic | 40.0% |
| ACGGAAAAACTATAGAGGTG+AGG | + | chr1_4:44496991-44497010 | Msa0164720:intron | 40.0% | |
| CGGAAAAACTATAGAGGTGA+GGG | + | chr1_4:44496992-44497011 | Msa0164720:intron | 40.0% | |
| !! | CAGAGGTATTGTACTGTTCA+TGG | + | chr1_4:44497389-44497408 | Msa0164720:intron | 40.0% |
| TGGACATTGACAACGATACT+TGG | - | chr1_4:44497462-44497481 | None:intergenic | 40.0% | |
| ! | AAGTATCGTTGTCAATGTCC+AGG | + | chr1_4:44497461-44497480 | Msa0164720:intron | 40.0% |
| ! | GTGTTGTTAACCTAGACAGT+AGG | - | chr1_4:44497783-44497802 | None:intergenic | 40.0% |
| GTTAACAACACAGATGCTGA+GGG | + | chr1_4:44497792-44497811 | Msa0164720:CDS | 40.0% | |
| CTGGTGTATACTTGTAACCA+AGG | + | chr1_4:44497837-44497856 | Msa0164720:CDS | 40.0% | |
| GTATACTTGTAACCAAGGTG+TGG | + | chr1_4:44497842-44497861 | Msa0164720:CDS | 40.0% | |
| TTGTAACCAAGGTGTGGATA+AGG | + | chr1_4:44497848-44497867 | Msa0164720:CDS | 40.0% | |
| TTCAGCAGGACAAATTGGAT+TGG | - | chr1_4:44498012-44498031 | None:intergenic | 40.0% | |
| ATTGACCTGGCAACATTAAC+TGG | + | chr1_4:44498191-44498210 | Msa0164720:CDS | 40.0% | |
| GGTGCATGTATAATTGCTCT+AGG | + | chr1_4:44498212-44498231 | Msa0164720:CDS | 40.0% | |
| CTCATAATTACCTGCGATTG+AGG | - | chr1_4:44498240-44498259 | None:intergenic | 40.0% | |
| !! | ATTAGTACGTGAGAGTACCA+GGG | + | chr1_4:44498315-44498334 | Msa0164720:intron | 40.0% |
| ATTCTTGACCCATGGATCTA+TGG | + | chr1_4:44498347-44498366 | Msa0164720:intron | 40.0% | |
| CAGACAAACCGTATTGGAAA+TGG | - | chr1_4:44498403-44498422 | None:intergenic | 40.0% | |
| CTTGAACAGACAAACCGTAT+TGG | - | chr1_4:44498409-44498428 | None:intergenic | 40.0% | |
| ! | CTTTTCCACTATTGGGACTT+TGG | + | chr1_4:44498710-44498729 | Msa0164720:intron | 40.0% |
| ATTTACAACCAGTGATGACC+TGG | + | chr1_4:44498812-44498831 | Msa0164720:CDS | 40.0% | |
| TTTGATGCTTCTGATGTGAG+CGG | + | chr1_4:44498846-44498865 | Msa0164720:CDS | 40.0% | |
| TGCCAATGGAAGAAAGTTAC+TGG | + | chr1_4:44498886-44498905 | Msa0164720:CDS | 40.0% | |
| GCCAATGGAAGAAAGTTACT+GGG | + | chr1_4:44498887-44498906 | Msa0164720:CDS | 40.0% | |
| TCCCAGTAACTTTCTTCCAT+TGG | - | chr1_4:44498891-44498910 | None:intergenic | 40.0% | |
| GTTGCTGATATGTTGAACAC+CGG | + | chr1_4:44498927-44498946 | Msa0164720:CDS | 40.0% | |
| ! | TGCTGCTCTTTTCTTAAAGC+AGG | + | chr1_4:44498974-44498993 | Msa0164720:CDS | 40.0% |
| ACTATGTGCTTAGTTGCTTG+GGG | + | chr1_4:44499219-44499238 | Msa0164720:intron | 40.0% | |
| TCTTTGTCACAGACATGGTA+TGG | + | chr1_4:44499397-44499416 | Msa0164720:intron | 40.0% | |
| !! | TGGATGCATATTGATTTGGC+TGG | + | chr1_4:44499510-44499529 | Msa0164720:CDS | 40.0% |
| ! | CTTTAGTGGAATGGGTATTG+AGG | + | chr1_4:44499583-44499602 | Msa0164720:CDS | 40.0% |
| TCATAGGGTGGGAAAAGTAA+TGG | - | chr1_4:44499795-44499814 | None:intergenic | 40.0% | |
| !! | ATTACTTTTCCCACCCTATG+AGG | + | chr1_4:44499794-44499813 | Msa0164720:three_prime_UTR | 40.0% |
| CCTATCCATAACATTGGTGG+AGG | - | chr1_4:44496851-44496870 | None:intergenic | 45.0% | |
| CCTCCACCAATGTTATGGAT+AGG | + | chr1_4:44496848-44496867 | Msa0164720:five_prime_UTR | 45.0% | |
| GACATTGTCACAGCTTCCAA+CGG | + | chr1_4:44496972-44496991 | Msa0164720:CDS | 45.0% | |
| GTCAGCATATCCTACTGTCT+AGG | + | chr1_4:44497770-44497789 | Msa0164720:intron | 45.0% | |
| GGTTAACAACACAGATGCTG+AGG | + | chr1_4:44497791-44497810 | Msa0164720:intron | 45.0% | |
| TGCATACCTTATCCACACCT+TGG | - | chr1_4:44497857-44497876 | None:intergenic | 45.0% | |
| AGTGCCTCTATCTACTGCTA+TGG | + | chr1_4:44498125-44498144 | Msa0164720:intron | 45.0% | |
| ATGCACCAGTTAATGTTGCC+AGG | - | chr1_4:44498199-44498218 | None:intergenic | 45.0% | |
| !! | CATTAGTACGTGAGAGTACC+AGG | + | chr1_4:44498314-44498333 | Msa0164720:intron | 45.0% |
| CTCCATTATGTGAGAGTGAG+CGG | - | chr1_4:44498439-44498458 | None:intergenic | 45.0% | |
| ! | CTCACTCTCACATAATGGAG+AGG | + | chr1_4:44498439-44498458 | Msa0164720:intron | 45.0% |
| GAAAGACAAGACCTAAGCTC+TGG | + | chr1_4:44498652-44498671 | Msa0164720:intron | 45.0% | |
| TTCTTTAGCCAGGTCATCAC+TGG | - | chr1_4:44498823-44498842 | None:intergenic | 45.0% | |
| TTGATGCTTCTGATGTGAGC+GGG | + | chr1_4:44498847-44498866 | Msa0164720:CDS | 45.0% | |
| GAAACTATGGAGGATGCCAA+TGG | + | chr1_4:44498872-44498891 | Msa0164720:CDS | 45.0% | |
| AACAATGCTCCATTGCAACC+AGG | + | chr1_4:44499032-44499051 | Msa0164720:intron | 45.0% | |
| TCCACGTGTAACACAGTAGA+GGG | - | chr1_4:44499126-44499145 | None:intergenic | 45.0% | |
| ATCCACGTGTAACACAGTAG+AGG | - | chr1_4:44499127-44499146 | None:intergenic | 45.0% | |
| CTACTGTGTTACACGTGGAT+TGG | + | chr1_4:44499127-44499146 | Msa0164720:intron | 45.0% | |
| !! | GTGTTACACGTGGATTGGAT+TGG | + | chr1_4:44499132-44499151 | Msa0164720:intron | 45.0% |
| !! | ACACGTGGATTGGATTGGAT+TGG | + | chr1_4:44499137-44499156 | Msa0164720:intron | 45.0% |
| TGTAGTCCTGCTGCACATTT+AGG | + | chr1_4:44499249-44499268 | Msa0164720:intron | 45.0% | |
| CCTAATCCTAAATGTGCAGC+AGG | - | chr1_4:44499258-44499277 | None:intergenic | 45.0% | |
| ! | CCTGCTGCACATTTAGGATT+AGG | + | chr1_4:44499255-44499274 | Msa0164720:intron | 45.0% |
| GAAGCTGTGACAATGTCTCC+GGG | - | chr1_4:44496969-44496988 | None:intergenic | 50.0% | |
| GGAAGCTGTGACAATGTCTC+CGG | - | chr1_4:44496970-44496989 | None:intergenic | 50.0% | |
| TCAAGAATAACCCTGCACCC+TGG | - | chr1_4:44498335-44498354 | None:intergenic | 50.0% | |
| GCAGGGTTATTCTTGACCCA+TGG | + | chr1_4:44498339-44498358 | Msa0164720:intron | 50.0% | |
| CTCCGCTCACTCTCACATAA+TGG | + | chr1_4:44498434-44498453 | Msa0164720:intron | 50.0% | |
| AGACGTCTCTTCCAGAGCTT+AGG | - | chr1_4:44498666-44498685 | None:intergenic | 50.0% | |
| TGATGCTTCTGATGTGAGCG+GGG | + | chr1_4:44498848-44498867 | Msa0164720:CDS | 50.0% | |
| ATGTGAGCGGGGAGAAACTA+TGG | + | chr1_4:44498859-44498878 | Msa0164720:CDS | 50.0% | |
| GCTGATATGTTGAACACCGG+TGG | + | chr1_4:44498930-44498949 | Msa0164720:CDS | 50.0% | |
| GTAGCACTACCTGGTTGCAA+TGG | - | chr1_4:44499044-44499063 | None:intergenic | 50.0% | |
| CCACGTGTAACACAGTAGAG+GGG | - | chr1_4:44499125-44499144 | None:intergenic | 50.0% | |
| !! | TTGATTTGGCTGGTCCTGTG+TGG | + | chr1_4:44499520-44499539 | Msa0164720:CDS | 50.0% |
| !!! | CGCTGCTTTTCATTCCACAC+AGG | - | chr1_4:44499537-44499556 | None:intergenic | 50.0% |
| GAAAAGCAGCGTTGTGCAAC+TGG | + | chr1_4:44499546-44499565 | Msa0164720:CDS | 50.0% | |
| CAGCGTTGTGCAACTGGATT+TGG | + | chr1_4:44499552-44499571 | Msa0164720:CDS | 50.0% | |
| AGTGGAACAGGTATGAGGCC+CGG | + | chr1_4:44496948-44496967 | Msa0164720:CDS | 55.0% | |
| ACAACACAGATGCTGAGGGC+AGG | + | chr1_4:44497796-44497815 | Msa0164720:CDS | 55.0% | |
| GCTTACTCTGGCTGATGCTC+TGG | + | chr1_4:44497818-44497837 | Msa0164720:CDS | 55.0% | |
| TGAGCGGGGAGAAACTATGG+AGG | + | chr1_4:44498862-44498881 | Msa0164720:CDS | 55.0% | |
| TTGAACACCGGTGGTCGTCA+AGG | + | chr1_4:44498939-44498958 | Msa0164720:CDS | 55.0% | |
| CCCCTCTACTGTGTTACACG+TGG | + | chr1_4:44499122-44499141 | Msa0164720:intron | 55.0% | |
| TGCTGAGGGCAGGCTTACTC+TGG | + | chr1_4:44497806-44497825 | Msa0164720:CDS | 60.0% | |
| !! | GCTCTAGGACCCTCAATCGC+AGG | + | chr1_4:44498227-44498246 | Msa0164720:CDS | 60.0% |
| !! | ACGTGAGAGTACCAGGGTGC+AGG | + | chr1_4:44498321-44498340 | Msa0164720:intron | 60.0% |
| !! | CGTGAGAGTACCAGGGTGCA+GGG | + | chr1_4:44498322-44498341 | Msa0164720:intron | 60.0% |
| AACACCGGTGGTCGTCAAGG+TGG | + | chr1_4:44498942-44498961 | Msa0164720:CDS | 60.0% | |
| AGCACCACCTTGACGACCAC+CGG | - | chr1_4:44498949-44498968 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 44496751 | 44499823 | 44496751 | ID=Msa0164720;Name=Msa0164720 |
| chr1_4 | mRNA | 44496751 | 44499823 | 44496751 | ID=Msa0164720-mRNA-1;Parent=Msa0164720;Name=Msa0164720-mRNA-1;_AED=0.02;_eAED=0.02;_QI=191|1|1|1|1|1|5|206|173 |
| chr1_4 | exon | 44496751 | 44497007 | 44496751 | ID=Msa0164720-mRNA-1:exon:12749;Parent=Msa0164720-mRNA-1 |
| chr1_4 | exon | 44497792 | 44497869 | 44497792 | ID=Msa0164720-mRNA-1:exon:12750;Parent=Msa0164720-mRNA-1 |
| chr1_4 | exon | 44498188 | 44498248 | 44498188 | ID=Msa0164720-mRNA-1:exon:12751;Parent=Msa0164720-mRNA-1 |
| chr1_4 | exon | 44498808 | 44498995 | 44498808 | ID=Msa0164720-mRNA-1:exon:12752;Parent=Msa0164720-mRNA-1 |
| chr1_4 | exon | 44499489 | 44499823 | 44499489 | ID=Msa0164720-mRNA-1:exon:12753;Parent=Msa0164720-mRNA-1 |
| chr1_4 | five_prime_UTR | 44496751 | 44496941 | 44496751 | ID=Msa0164720-mRNA-1:five_prime_utr;Parent=Msa0164720-mRNA-1 |
| chr1_4 | CDS | 44496942 | 44497007 | 44496942 | ID=Msa0164720-mRNA-1:cds;Parent=Msa0164720-mRNA-1 |
| chr1_4 | CDS | 44497792 | 44497869 | 44497792 | ID=Msa0164720-mRNA-1:cds;Parent=Msa0164720-mRNA-1 |
| chr1_4 | CDS | 44498188 | 44498248 | 44498188 | ID=Msa0164720-mRNA-1:cds;Parent=Msa0164720-mRNA-1 |
| chr1_4 | CDS | 44498808 | 44498995 | 44498808 | ID=Msa0164720-mRNA-1:cds;Parent=Msa0164720-mRNA-1 |
| chr1_4 | CDS | 44499489 | 44499617 | 44499489 | ID=Msa0164720-mRNA-1:cds;Parent=Msa0164720-mRNA-1 |
| chr1_4 | three_prime_UTR | 44499618 | 44499823 | 44499618 | ID=Msa0164720-mRNA-1:three_prime_utr;Parent=Msa0164720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
