AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0234400


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0234400 MtrunA17_Chr2g0305841 100.000 173 0 0 1 173 411 583 6.89e-125 363
Msa0234400 MtrunA17_Chr4g0073971 84.971 173 26 0 1 173 395 567 2.91e-109 322
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0234400 AT2G24200.3 82.659 173 30 0 1 173 311 483 3.45e-105 310
Msa0234400 AT2G24200.2 82.659 173 30 0 1 173 347 519 7.17e-105 310
Msa0234400 AT2G24200.1 82.659 173 30 0 1 173 347 519 7.17e-105 310
Msa0234400 AT4G30920.1 82.081 173 31 0 1 173 410 582 7.08e-102 304
Msa0234400 AT4G30910.1 78.035 173 38 0 1 173 409 581 4.36e-97 292
Msa0234400 AT4G30910.2 68.878 196 38 1 1 173 409 604 6.28e-92 279

Find 72 sgRNAs with CRISPR-Local

Find 368 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATTTCAATAAAACAAAAT+TGG 0.165279 2_2:-7140034 Msa0234400:three_prime_UTR
ATTGACCTGGCAACATTAAC+TGG 0.335424 2_2:-7145413 Msa0234400:CDS
GAAAAGCAGCGTTGTGCAAC+TGG 0.335946 2_2:-7140198 Msa0234400:CDS
CAGCGTTGTGCAACTGGATT+TGG 0.359763 2_2:-7140192 Msa0234400:CDS
TGTATTTGTTAAGCAGCGTT+TGG 0.360841 2_2:-7140082 Msa0234400:three_prime_UTR
TGCCAATGGAAGAAAGTTAC+TGG 0.367635 2_2:-7144718 Msa0234400:CDS
TCAATGGATGCATATTGATT+TGG 0.374105 2_2:-7140238 Msa0234400:CDS
AATAAAACAAAATTGGGTTT+CGG 0.376843 2_2:-7140027 Msa0234400:three_prime_UTR
ATTTGGTGTATCAACTTTAG+TGG 0.377388 2_2:-7140175 Msa0234400:CDS
GCTTACTCTGGCTGATGCTC+TGG 0.377964 2_2:-7145786 Msa0234400:CDS
AATTTCAATAAAACAAAATT+GGG 0.383091 2_2:-7140033 Msa0234400:three_prime_UTR
GTATTTGTTAAGCAGCGTTT+GGG 0.384225 2_2:-7140081 Msa0234400:three_prime_UTR
ATGTGAGCGGGGAGAAACTA+TGG 0.394427 2_2:-7144745 Msa0234400:CDS
AGGACGCGCGAGAACCTCAT+AGG 0.412273 2_2:+7139936 None:intergenic
TACTGGGAATCAATGAAATC+AGG 0.419927 2_2:-7144701 Msa0234400:CDS
CTCATAATTACCTGCGATTG+AGG 0.421437 2_2:+7145367 None:intergenic
ATCTTCCTCCACCAATGTTA+TGG 0.427294 2_2:-7146762 Msa0234400:five_prime_UTR
GTGTATCAACTTTAGTGGAA+TGG 0.429941 2_2:-7140170 Msa0234400:CDS
TCCCAGTAACTTTCTTCCAT+TGG 0.430091 2_2:+7144716 None:intergenic
GAGAATATGATAAGTGGAAC+AGG 0.431241 2_2:-7146669 Msa0234400:exon
ACCAAATACACCAAAACAAT+CGG 0.432353 2_2:+7146814 None:intergenic
GCAGTTTATGCCGATTGTTT+TGG 0.444185 2_2:-7146824 Msa0234400:five_prime_UTR
TGTATCAACTTTAGTGGAAT+GGG 0.444480 2_2:-7140169 Msa0234400:CDS
TGCTGAGGGCAGGCTTACTC+TGG 0.447381 2_2:-7145798 Msa0234400:CDS
GGAAGCTGTGACAATGTCTC+CGG 0.456666 2_2:+7146638 None:intergenic
CTCCACCAATGTTATGGATA+GGG 0.456881 2_2:-7146756 Msa0234400:five_prime_UTR
TTTGCAGTTTGTTGACGAAA+AGG 0.458709 2_2:-7140262 Msa0234400:intron
TTGTAACCAAGGTGTGGATA+AGG 0.461972 2_2:-7145756 Msa0234400:intron
TTCTTTAGCCAGGTCATCAC+TGG 0.471955 2_2:+7144784 None:intergenic
TCATAATTACCTGCGATTGA+GGG 0.483444 2_2:+7145368 None:intergenic
CCTCCACCAATGTTATGGAT+AGG 0.484962 2_2:-7146757 Msa0234400:five_prime_UTR
TTGTTGACGAAAAGGTTCAA+TGG 0.490475 2_2:-7140254 Msa0234400:CDS
CTTTAGTGGAATGGGTATTG+AGG 0.496078 2_2:-7140161 Msa0234400:CDS
ATGCACCAGTTAATGTTGCC+AGG 0.529940 2_2:+7145408 None:intergenic
AGCACCACCTTGACGACCAC+CGG 0.532762 2_2:+7144658 None:intergenic
TGATAAGTGGAACAGGTATG+AGG 0.535456 2_2:-7146662 Msa0234400:CDS
TTGATGCTTCTGATGTGAGC+GGG 0.535615 2_2:-7144757 Msa0234400:CDS
TGCTCTTCAGATAATTGACC+TGG 0.541191 2_2:-7145426 Msa0234400:intron
AACCCTATCCATAACATTGG+TGG 0.545763 2_2:+7146754 None:intergenic
GGTGCATGTATAATTGCTCT+AGG 0.548072 2_2:-7145392 Msa0234400:CDS
GCTCTAGGACCCTCAATCGC+AGG 0.553111 2_2:-7145377 Msa0234400:intron
GAAGCTGTGACAATGTCTCC+GGG 0.558603 2_2:+7146639 None:intergenic
TGGATGCATATTGATTTGGC+TGG 0.565101 2_2:-7140234 Msa0234400:CDS
CGCGCGAGAACCTCATAGGG+TGG 0.569254 2_2:+7139940 None:intergenic
AGTGGAACAGGTATGAGGCC+CGG 0.569603 2_2:-7146657 Msa0234400:CDS
TGCATACCTTATCCACACCT+TGG 0.582813 2_2:+7145750 None:intergenic
GCTTGTGAGAATATGATAAG+TGG 0.585466 2_2:-7146675 Msa0234400:exon
ACAACACAGATGCTGAGGGC+AGG 0.586240 2_2:-7145808 Msa0234400:CDS
TTGAACACCGGTGGTCGTCA+AGG 0.590796 2_2:-7144665 Msa0234400:CDS
TCATAGGGTGGGAAAAGTAA+TGG 0.591325 2_2:+7139952 None:intergenic
GAAGATGCACTATACAACAT+AGG 0.596301 2_2:+7146779 None:intergenic
CCTATCCATAACATTGGTGG+AGG 0.598399 2_2:+7146757 None:intergenic
GGACGCGCGAGAACCTCATA+GGG 0.601049 2_2:+7139937 None:intergenic
AACAACCCTATCCATAACAT+TGG 0.601284 2_2:+7146751 None:intergenic
ATTTACAACCAGTGATGACC+TGG 0.603884 2_2:-7144792 Msa0234400:CDS
GAAACTATGGAGGATGCCAA+TGG 0.604081 2_2:-7144732 Msa0234400:CDS
GCGCGAGAACCTCATAGGGT+GGG 0.605334 2_2:+7139941 None:intergenic
GACATTGTCACAGCTTCCAA+CGG 0.618318 2_2:-7146633 Msa0234400:CDS
GGTTAACAACACAGATGCTG+AGG 0.618987 2_2:-7145813 Msa0234400:CDS
TTGATTTGGCTGGTCCTGTG+TGG 0.624990 2_2:-7140224 Msa0234400:CDS
GCCAATGGAAGAAAGTTACT+GGG 0.626087 2_2:-7144717 Msa0234400:CDS
TCAAAATGTTGTGCATGTGA+AGG 0.640371 2_2:-7146715 Msa0234400:five_prime_UTR
TTTGATGCTTCTGATGTGAG+CGG 0.646083 2_2:-7144758 Msa0234400:CDS
AACACCGGTGGTCGTCAAGG+TGG 0.652566 2_2:-7144662 Msa0234400:CDS
GTTAACAACACAGATGCTGA+GGG 0.671100 2_2:-7145812 Msa0234400:CDS
TGATGCTTCTGATGTGAGCG+GGG 0.674520 2_2:-7144756 Msa0234400:CDS
GTATACTTGTAACCAAGGTG+TGG 0.674878 2_2:-7145762 Msa0234400:CDS
CTGGTGTATACTTGTAACCA+AGG 0.676497 2_2:-7145767 Msa0234400:CDS
TATTTGTTAAGCAGCGTTTG+GGG 0.691488 2_2:-7140080 Msa0234400:three_prime_UTR
TGAGCGGGGAGAAACTATGG+AGG 0.700569 2_2:-7144742 Msa0234400:CDS
GCTGATATGTTGAACACCGG+TGG 0.717740 2_2:-7144674 Msa0234400:CDS
GTTGCTGATATGTTGAACAC+CGG 0.743602 2_2:-7144677 Msa0234400:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATACTTAAAATGTATTTT+TGG + chr2_2:7142535-7142554 None:intergenic 10.0%
!! CAAAATTATTATATTATAAC+AGG - chr2_2:7142822-7142841 Msa0234400:intron 10.0%
!!! CTATAATTTTTTTTATAACT+CGG + chr2_2:7142946-7142965 None:intergenic 10.0%
!! ATAGAAAAAAAATTTGTAAA+AGG - chr2_2:7143212-7143231 Msa0234400:intron 10.0%
!!! TTATTTTGTGTATAAAAAAA+AGG - chr2_2:7143527-7143546 Msa0234400:intron 10.0%
!!! TATTTTGTGTATAAAAAAAA+GGG - chr2_2:7143528-7143547 Msa0234400:intron 10.0%
!! ATATATATATATATATAGAG+GGG + chr2_2:7143755-7143774 None:intergenic 10.0%
!!! ATTATTTTCAAAAACAAAAA+AGG - chr2_2:7144619-7144638 Msa0234400:intron 10.0%
!!! TTTTATGAAAAAAAATACAT+GGG + chr2_2:7145468-7145487 None:intergenic 10.0%
!!! TTTTATAAAATAAATACATG+GGG + chr2_2:7145574-7145593 None:intergenic 10.0%
!! AAATTTCAATAAAACAAAAT+TGG - chr2_2:7146763-7146782 Msa0234400:five_prime_UTR 10.0%
!! AATTTCAATAAAACAAAATT+GGG - chr2_2:7146764-7146783 Msa0234400:five_prime_UTR 10.0%
!! TCATAATTAGTAATTACATT+TGG + chr2_2:7140534-7140553 None:intergenic 15.0%
!!! TATTAATTTTTGAAAAGACT+CGG - chr2_2:7140680-7140699 Msa0234400:intron 15.0%
!! AATCAAGTCAAATAAAAAAA+CGG + chr2_2:7140714-7140733 None:intergenic 15.0%
!!! ATATGAATGAACTAAAATTT+TGG - chr2_2:7140913-7140932 Msa0234400:intron 15.0%
!!! TTTCATTTTTATTTAAGAGT+TGG - chr2_2:7141164-7141183 Msa0234400:intron 15.0%
!!! ATTTTTATGTTCTAATAGTT+TGG + chr2_2:7141811-7141830 None:intergenic 15.0%
!! TAAAAAATACTCAATTATAG+TGG - chr2_2:7141880-7141899 Msa0234400:intron 15.0%
!! AAAAATTATAGTATTAGCTA+AGG - chr2_2:7142955-7142974 Msa0234400:intron 15.0%
!! ATTAGATTAGTGTTTAAATT+GGG - chr2_2:7143027-7143046 Msa0234400:intron 15.0%
!! TACAAAAAAAAAAGAGTAAA+GGG + chr2_2:7143189-7143208 None:intergenic 15.0%
!! ATACAAAAAAAAAAGAGTAA+AGG + chr2_2:7143190-7143209 None:intergenic 15.0%
!! AATAGAAATATATAGGAAAT+TGG + chr2_2:7143345-7143364 None:intergenic 15.0%
!!! TAGATAATTATTTTTTCTGT+TGG + chr2_2:7143419-7143438 None:intergenic 15.0%
!!! ATTTTGTGTATAAAAAAAAG+GGG - chr2_2:7143529-7143548 Msa0234400:intron 15.0%
!!! AACAATTAATGACTTTTAAT+TGG + chr2_2:7143573-7143592 None:intergenic 15.0%
!!! TTAATTGATAATAGGATTAA+AGG - chr2_2:7143680-7143699 Msa0234400:intron 15.0%
!! TATATATATATATATAGAGG+GGG + chr2_2:7143754-7143773 None:intergenic 15.0%
!! TATTTGATTATTCCAAAAAA+TGG - chr2_2:7143836-7143855 Msa0234400:intron 15.0%
!! ATATTTAATAACATATGTAG+TGG + chr2_2:7144142-7144161 None:intergenic 15.0%
!! CTTATCACAAATTAAATAAT+GGG + chr2_2:7144905-7144924 None:intergenic 15.0%
!! ACTTATCACAAATTAAATAA+TGG + chr2_2:7144906-7144925 None:intergenic 15.0%
!!! TTCTTTTGATGAAAATAAAA+AGG - chr2_2:7145335-7145354 Msa0234400:intron 15.0%
!! TTTATGAAAAAAAATACATG+GGG + chr2_2:7145467-7145486 None:intergenic 15.0%
!!! CTTTTATGAAAAAAAATACA+TGG + chr2_2:7145469-7145488 None:intergenic 15.0%
!!! TTTTATGTAATTTATTTTGC+TGG + chr2_2:7145520-7145539 None:intergenic 15.0%
!! ACAGAAATGAAAAAAAAAAA+TGG - chr2_2:7145905-7145924 Msa0234400:intron 15.0%
!!! TTTTTTAACTTTACAACTTT+TGG + chr2_2:7146253-7146272 None:intergenic 15.0%
!! AAGTTGTAAAGTTAAAAAAA+TGG - chr2_2:7146254-7146273 Msa0234400:intron 15.0%
!!! AAATTGATGACTATTTTAAA+GGG + chr2_2:7146428-7146447 None:intergenic 15.0%
!!! AAAATTGATGACTATTTTAA+AGG + chr2_2:7146429-7146448 None:intergenic 15.0%
!!! AAATAGTCATCAATTTTTTT+TGG - chr2_2:7146432-7146451 Msa0234400:intron 15.0%
!! AGGGTTTATGTTTATATTTA+TGG - chr2_2:7140203-7140222 Msa0234400:CDS 20.0%
!!! AGTATATGAAAGTATATATC+AGG + chr2_2:7140405-7140424 None:intergenic 20.0%
!! GTATGAATCAATTATTCTAA+TGG + chr2_2:7140474-7140493 None:intergenic 20.0%
!! AATTATATTGTTTGTAACAG+AGG - chr2_2:7140565-7140584 Msa0234400:intron 20.0%
!! TTTCAAAAATTAATACATCC+TGG + chr2_2:7140675-7140694 None:intergenic 20.0%
!!! ATTAATTTTTGAAAAGACTC+GGG - chr2_2:7140681-7140700 Msa0234400:intron 20.0%
!! TATCACATGTTTGATAAATT+TGG - chr2_2:7141131-7141150 Msa0234400:intron 20.0%
!!! CAAAGTATAAGTTTTATGTA+TGG - chr2_2:7141456-7141475 Msa0234400:intron 20.0%
!!! ATAAAGTCACATGATTTTTT+TGG - chr2_2:7141727-7141746 Msa0234400:intron 20.0%
!! ACATAAAAATTGTAATCTCT+TGG - chr2_2:7141821-7141840 Msa0234400:intron 20.0%
!! CATAAAAATTGTAATCTCTT+GGG - chr2_2:7141822-7141841 Msa0234400:intron 20.0%
!! ATAAAAATTGTAATCTCTTG+GGG - chr2_2:7141823-7141842 Msa0234400:intron 20.0%
!! CATAAACCAATAAAAGTAAA+CGG + chr2_2:7142475-7142494 None:intergenic 20.0%
!!! ATTGGTTTATGTTTTCATTT+TGG - chr2_2:7142484-7142503 Msa0234400:intron 20.0%
!!! TAATTTTGTCACTACATAAT+TGG + chr2_2:7142810-7142829 None:intergenic 20.0%
!! CATTAGATTAGTGTTTAAAT+TGG - chr2_2:7143026-7143045 Msa0234400:intron 20.0%
!!! ACCTTTTAGTTCATTTTAAT+TGG - chr2_2:7143144-7143163 Msa0234400:intron 20.0%
!! ACCAATTAAAATGAACTAAA+AGG + chr2_2:7143148-7143167 None:intergenic 20.0%
!! AGCATGAAATAGAAATATAT+AGG + chr2_2:7143352-7143371 None:intergenic 20.0%
!!! CTAAGTCATTAATTGATAAT+AGG - chr2_2:7143672-7143691 Msa0234400:intron 20.0%
!! ATATATATATATATAGAGGG+GGG + chr2_2:7143753-7143772 None:intergenic 20.0%
!!! TCAATTTTTGCTTACATTTT+GGG + chr2_2:7144219-7144238 None:intergenic 20.0%
!!! ATCAATTTTTGCTTACATTT+TGG + chr2_2:7144220-7144239 None:intergenic 20.0%
!!! ACATAATTTTGCTTACATTT+TGG - chr2_2:7144296-7144315 Msa0234400:intron 20.0%
!!! CATAATTTTGCTTACATTTT+GGG - chr2_2:7144297-7144316 Msa0234400:intron 20.0%
!! TTTCTGATGTAATATTTAAC+AGG + chr2_2:7144957-7144976 None:intergenic 20.0%
!!! GTAAATATTAGATCTGATTT+TGG - chr2_2:7145174-7145193 Msa0234400:intron 20.0%
!!! AATAAAAAGGACTTTTTTGT+TGG - chr2_2:7145348-7145367 Msa0234400:intron 20.0%
!!! TATGTTTTTCCTTTCAAAAA+AGG + chr2_2:7145623-7145642 None:intergenic 20.0%
!! ATGGTGATTAATAATTAAAC+AGG + chr2_2:7145810-7145829 None:intergenic 20.0%
!! TTCTATAGGAAAAAAATCAT+TGG - chr2_2:7145861-7145880 Msa0234400:intron 20.0%
!! CAAAGATCAATAACAAATTA+TGG + chr2_2:7145955-7145974 None:intergenic 20.0%
!!! ATTCCAACTTTTATATTGAA+GGG + chr2_2:7146324-7146343 None:intergenic 20.0%
!!! TATTCCAACTTTTATATTGA+AGG + chr2_2:7146325-7146344 None:intergenic 20.0%
!! TATAAAAGTTGGAATAACAT+TGG - chr2_2:7146329-7146348 Msa0234400:intron 20.0%
!! ATAAAAGTTGGAATAACATT+GGG - chr2_2:7146330-7146349 Msa0234400:intron 20.0%
!!! ACTATTTTAAAGGGTAATAT+TGG + chr2_2:7146419-7146438 None:intergenic 20.0%
!!! ATCAATTTTTTTTGGAAACA+GGG - chr2_2:7146440-7146459 Msa0234400:intron 20.0%
!! AATAAAACAAAATTGGGTTT+CGG - chr2_2:7146770-7146789 Msa0234400:five_prime_UTR 20.0%
!! AGCACAAAAAAATATTGAAA+AGG + chr2_2:7146807-7146826 None:intergenic 20.0%
! AAACAAATATGATGACAGAA+AGG - chr2_2:7140321-7140340 Msa0234400:intron 25.0%
! AGTATATATCAGGTGAAATT+GGG + chr2_2:7140395-7140414 None:intergenic 25.0%
! AAGTATATATCAGGTGAAAT+TGG + chr2_2:7140396-7140415 None:intergenic 25.0%
! ACTTATACAAAAAGATGTGT+GGG + chr2_2:7140629-7140648 None:intergenic 25.0%
!!! TTAATTTTTGAAAAGACTCG+GGG - chr2_2:7140682-7140701 Msa0234400:intron 25.0%
! TAATTGTAACAAACAAAGCA+AGG + chr2_2:7140939-7140958 None:intergenic 25.0%
! GAATATTAGAAAGATGTAGA+AGG + chr2_2:7141078-7141097 None:intergenic 25.0%
! TTTAATTCAACAGGACAAAT+TGG + chr2_2:7141210-7141229 None:intergenic 25.0%
! ATTTGTCCTGTTGAATTAAA+AGG - chr2_2:7141210-7141229 Msa0234400:intron 25.0%
!!! ATTCTTCCTTTTAATTCAAC+AGG + chr2_2:7141219-7141238 None:intergenic 25.0%
! GTTGAATTAAAAGGAAGAAT+CGG - chr2_2:7141219-7141238 Msa0234400:intron 25.0%
! TCATTCATGATTTGATCATA+TGG + chr2_2:7141694-7141713 None:intergenic 25.0%
! CAGTCATAATTATTCTTCTA+TGG - chr2_2:7141776-7141795 Msa0234400:intron 25.0%
! AATGAAACAGTTCATTGAAT+GGG + chr2_2:7141944-7141963 None:intergenic 25.0%
! AAATGAAACAGTTCATTGAA+TGG + chr2_2:7141945-7141964 None:intergenic 25.0%
!! AATGCTAACTATGTTTCTAA+AGG - chr2_2:7141979-7141998 Msa0234400:intron 25.0%
!! AAATAGTGAGAATGTCTTTT+TGG + chr2_2:7142558-7142577 None:intergenic 25.0%
!! TATGGTATTGAAAATGTTTC+TGG - chr2_2:7142608-7142627 Msa0234400:intron 25.0%
! GTACTAAACAATGCTATAAT+AGG - chr2_2:7142762-7142781 Msa0234400:intron 25.0%
!! TTATAACAGGTGAGTAATTT+TGG - chr2_2:7142835-7142854 Msa0234400:intron 25.0%
!! TATAACAGGTGAGTAATTTT+GGG - chr2_2:7142836-7142855 Msa0234400:intron 25.0%
! TAAGGACTATAAAGTAACTT+TGG - chr2_2:7142973-7142992 Msa0234400:intron 25.0%
! AAGCATGTATAATTGATACA+CGG + chr2_2:7143055-7143074 None:intergenic 25.0%
! TGTATCAATTATACATGCTT+TGG - chr2_2:7143055-7143074 Msa0234400:intron 25.0%
!!! ATACATGCTTTGGATAATTT+TGG - chr2_2:7143065-7143084 Msa0234400:intron 25.0%
!!! TTGGTAGTAGCAATTTTATA+TGG - chr2_2:7143084-7143103 Msa0234400:intron 25.0%
! ACAATATGTAAAACTCAGAT+GGG - chr2_2:7143267-7143286 Msa0234400:intron 25.0%
! AAGCATACGTGTAAAATAAA+AGG + chr2_2:7143320-7143339 None:intergenic 25.0%
! TAACATTCTTCATCTCAAAA+TGG + chr2_2:7143599-7143618 None:intergenic 25.0%
!! GCTTTAAGTTTCTTCTTTAT+TGG + chr2_2:7143625-7143644 None:intergenic 25.0%
! TAAGTAAACAAACTTACTCT+TGG - chr2_2:7143716-7143735 Msa0234400:intron 25.0%
!!! TTTTTTCGGATGTTTTTGAA+AGG + chr2_2:7143868-7143887 None:intergenic 25.0%
! TCAAAAACATCCGAAAAAAT+TGG - chr2_2:7143869-7143888 Msa0234400:intron 25.0%
! AGAGACTCTAAATAATATAG+TGG - chr2_2:7144048-7144067 Msa0234400:intron 25.0%
! GGGTCTATATAATTTATGAA+TGG + chr2_2:7144476-7144495 None:intergenic 25.0%
! AGAGAAGAAATTTGATAGAT+GGG + chr2_2:7144496-7144515 None:intergenic 25.0%
! TAGAGAAGAAATTTGATAGA+TGG + chr2_2:7144497-7144516 None:intergenic 25.0%
!!! TTAAATAATGGGTTTTGTAG+AGG + chr2_2:7144894-7144913 None:intergenic 25.0%
!!! CATGATTATCCTTTTTTGAA+AGG - chr2_2:7145611-7145630 Msa0234400:intron 25.0%
! CTTCATCAAACATACAAATA+TGG + chr2_2:7145724-7145743 None:intergenic 25.0%
! TCAATTTCTACTCTTTCTAT+AGG - chr2_2:7145847-7145866 Msa0234400:intron 25.0%
! AATAACAAATTATGGCATCA+AGG + chr2_2:7145947-7145966 None:intergenic 25.0%
! AATAGAAAGAGAAGTAAAAG+AGG - chr2_2:7146144-7146163 Msa0234400:intron 25.0%
! ATAGAAAGAGAAGTAAAAGA+GGG - chr2_2:7146145-7146164 Msa0234400:intron 25.0%
!!! CATCAATTTTTTTTGGAAAC+AGG - chr2_2:7146439-7146458 Msa0234400:intron 25.0%
!!! GACAGTTATATAATTTTGGT+AGG - chr2_2:7146462-7146481 Msa0234400:intron 25.0%
!!! GTGCTTTTCAGTTTATTTTT+AGG - chr2_2:7146822-7146841 Msa0234400:five_prime_UTR 25.0%
ACCAAATACACCAAAACAAT+CGG + chr2_2:7139986-7140005 None:intergenic 30.0%
TACTGTCTGATCTTATGATA+AGG - chr2_2:7140275-7140294 Msa0234400:intron 30.0%
!! ATGATAAGGTTTGTTGATAC+AGG - chr2_2:7140289-7140308 Msa0234400:intron 30.0%
! GAAATTGGGTTTAAGGTTTA+GGG + chr2_2:7140381-7140400 None:intergenic 30.0%
! TGAAATTGGGTTTAAGGTTT+AGG + chr2_2:7140382-7140401 None:intergenic 30.0%
GACTTATACAAAAAGATGTG+TGG + chr2_2:7140630-7140649 None:intergenic 30.0%
!! TAATTTTTGAAAAGACTCGG+GGG - chr2_2:7140683-7140702 Msa0234400:intron 30.0%
TAGATATGCAGTTATACACT+TGG + chr2_2:7140809-7140828 None:intergenic 30.0%
AAACATGTATTCATGCGATA+GGG + chr2_2:7140850-7140869 None:intergenic 30.0%
TAAACATGTATTCATGCGAT+AGG + chr2_2:7140851-7140870 None:intergenic 30.0%
ATTAGAAAGATGTAGAAGGA+TGG + chr2_2:7141074-7141093 None:intergenic 30.0%
! ACCAATCAATCAAGACTTTT+GGG + chr2_2:7141100-7141119 None:intergenic 30.0%
! AACCAATCAATCAAGACTTT+TGG + chr2_2:7141101-7141120 None:intergenic 30.0%
ACACAACAAATACTGACATT+TGG - chr2_2:7141273-7141292 Msa0234400:intron 30.0%
! CACATACTAATGACACTTTT+CGG + chr2_2:7141499-7141518 None:intergenic 30.0%
!!! AAGTCACATGATTTTTTTGG+TGG - chr2_2:7141730-7141749 Msa0234400:intron 30.0%
!!! TGATTTTTTTGGTGGTCAAA+TGG - chr2_2:7141738-7141757 Msa0234400:intron 30.0%
!! TTAGGACCGTTTACTTTTAT+TGG - chr2_2:7142466-7142485 Msa0234400:intron 30.0%
AAGACATTCTCACTATTTAG+TGG - chr2_2:7142560-7142579 Msa0234400:intron 30.0%
AGCATGTATAATTGATACAC+GGG + chr2_2:7143054-7143073 None:intergenic 30.0%
TTTACATATTGTGCACTTGT+GGG + chr2_2:7143259-7143278 None:intergenic 30.0%
! TTTTACATATTGTGCACTTG+TGG + chr2_2:7143260-7143279 None:intergenic 30.0%
CACAATATGTAAAACTCAGA+TGG - chr2_2:7143266-7143285 Msa0234400:intron 30.0%
TAGGATTAAAGGCTAAGATT+TGG - chr2_2:7143691-7143710 Msa0234400:intron 30.0%
!!! CTCTATCGTTCCAATTTTTT+CGG + chr2_2:7143882-7143901 None:intergenic 30.0%
TCACGAATAAGTGAAATGTT+TGG - chr2_2:7144103-7144122 Msa0234400:intron 30.0%
!! TTTTTGCTTACATTTTGGGA+CGG + chr2_2:7144215-7144234 None:intergenic 30.0%
! ACAATTTCGACATTTTTGCT+CGG - chr2_2:7144418-7144437 Msa0234400:intron 30.0%
AAAAAATGAAGAGTGAAGGT+GGG + chr2_2:7144814-7144833 None:intergenic 30.0%
TTGCAAAAAATGAAGAGTGA+AGG + chr2_2:7144818-7144837 None:intergenic 30.0%
!!! TCTTCATTTTTTGCAAACTC+AGG - chr2_2:7144822-7144841 Msa0234400:intron 30.0%
AACAAGATGATTGAATACTG+AGG + chr2_2:7144934-7144953 None:intergenic 30.0%
TCAGAAATCACGTAAAAGAA+TGG - chr2_2:7144970-7144989 Msa0234400:intron 30.0%
!!! CTTCATCTCTTCCTTTTTTT+CGG - chr2_2:7145072-7145091 Msa0234400:intron 30.0%
AATACAATGTCTTCTCTCTT+TGG - chr2_2:7145223-7145242 Msa0234400:intron 30.0%
AGTAGAAATTGAAAAGACAC+AGG + chr2_2:7145839-7145858 None:intergenic 30.0%
GGTAGAAAATGAAAAAAGAG+AGG - chr2_2:7145882-7145901 Msa0234400:intron 30.0%
TATTGATCTTTGTTGATCAC+TGG - chr2_2:7145963-7145982 Msa0234400:intron 30.0%
TTGAGTGAATCAATTAAGAG+AGG - chr2_2:7146191-7146210 Msa0234400:intron 30.0%
TGAGTGAATCAATTAAGAGA+GGG - chr2_2:7146192-7146211 Msa0234400:intron 30.0%
ATGCCCTTCAATATAAAAGT+TGG - chr2_2:7146318-7146337 Msa0234400:intron 30.0%
! CAGGGACAGTTATATAATTT+TGG - chr2_2:7146458-7146477 Msa0234400:intron 30.0%
! TCAATGGATGCATATTGATT+TGG - chr2_2:7146559-7146578 Msa0234400:intron 30.0%
!! ATTTGGTGTATCAACTTTAG+TGG - chr2_2:7146622-7146641 Msa0234400:CDS 30.0%
TGTATCAACTTTAGTGGAAT+GGG - chr2_2:7146628-7146647 Msa0234400:CDS 30.0%
GAAGATGCACTATACAACAT+AGG + chr2_2:7140021-7140040 None:intergenic 35.0%
AACAACCCTATCCATAACAT+TGG + chr2_2:7140049-7140068 None:intergenic 35.0%
! CATGCACAACATTTTGAACA+TGG + chr2_2:7140079-7140098 None:intergenic 35.0%
TCAAAATGTTGTGCATGTGA+AGG - chr2_2:7140082-7140101 Msa0234400:three_prime_UTR 35.0%
GCTTGTGAGAATATGATAAG+TGG - chr2_2:7140122-7140141 Msa0234400:three_prime_UTR 35.0%
GAGAATATGATAAGTGGAAC+AGG - chr2_2:7140128-7140147 Msa0234400:three_prime_UTR 35.0%
TTCCAACGGAAAAACTATAG+AGG - chr2_2:7140178-7140197 Msa0234400:CDS 35.0%
!! ATAAGGTTTGTTGATACAGG+AGG - chr2_2:7140292-7140311 Msa0234400:intron 35.0%
!! TAAGGTTTGTTGATACAGGA+GGG - chr2_2:7140293-7140312 Msa0234400:intron 35.0%
GTCAGTGTAAATAAGATCAG+TGG + chr2_2:7140352-7140371 None:intergenic 35.0%
ATCAGGTGAAATTGGGTTTA+AGG + chr2_2:7140388-7140407 None:intergenic 35.0%
!! AAGCTTGACAGCATTTTAGT+AGG + chr2_2:7140772-7140791 None:intergenic 35.0%
TCCCAAAAGTCTTGATTGAT+TGG - chr2_2:7141096-7141115 Msa0234400:intron 35.0%
TTCAACAGGACAAATTGGAT+TGG + chr2_2:7141205-7141224 None:intergenic 35.0%
! CCTTTTAAACAGAACTGAAC+TGG + chr2_2:7141249-7141268 None:intergenic 35.0%
CCAGTTCAGTTCTGTTTAAA+AGG - chr2_2:7141246-7141265 Msa0234400:intron 35.0%
AAAACCATAGCAGTAGATAG+AGG + chr2_2:7141325-7141344 None:intergenic 35.0%
TTAGAACTCTGCTAACAGAT+TGG - chr2_2:7141343-7141362 Msa0234400:intron 35.0%
TCATAATTACCTGCGATTGA+GGG + chr2_2:7141432-7141451 None:intergenic 35.0%
!! ATTAGTATGTGAGAGTACCA+GGG - chr2_2:7141508-7141527 Msa0234400:intron 35.0%
AATCTTGACCATAGATCCAT+GGG + chr2_2:7141551-7141570 None:intergenic 35.0%
TAATCTTGACCATAGATCCA+TGG + chr2_2:7141552-7141571 None:intergenic 35.0%
CACCAATTCCATTTCCAATA+CGG - chr2_2:7141585-7141604 Msa0234400:intron 35.0%
AACCGTATTGGAAATGGAAT+TGG + chr2_2:7141590-7141609 None:intergenic 35.0%
! TATAGTGGCTTTTCCACTAT+TGG - chr2_2:7141895-7141914 Msa0234400:intron 35.0%
! ATAGTGGCTTTTCCACTATT+GGG - chr2_2:7141896-7141915 Msa0234400:intron 35.0%
TAAAACCAAAGTCCCAATAG+TGG + chr2_2:7141911-7141930 None:intergenic 35.0%
CATCAAAAACTTCTTTAGCC+AGG + chr2_2:7142026-7142045 None:intergenic 35.0%
TACTGGGAATCAATGAAATC+AGG - chr2_2:7142096-7142115 Msa0234400:intron 35.0%
TTATTATGTGTAGCACTACC+TGG + chr2_2:7142246-7142265 None:intergenic 35.0%
ATACTATGTGCTTAGTTGCT+TGG - chr2_2:7142410-7142429 Msa0234400:intron 35.0%
TACTATGTGCTTAGTTGCTT+GGG - chr2_2:7142411-7142430 Msa0234400:intron 35.0%
TATCTTCTTTGTCACAGACA+TGG - chr2_2:7142585-7142604 Msa0234400:intron 35.0%
!! GGTATTGAAAATGTTTCTGG+AGG - chr2_2:7142611-7142630 Msa0234400:intron 35.0%
!!! TAATTTTGGGTTTCGTGCAT+CGG - chr2_2:7142849-7142868 Msa0234400:intron 35.0%
TTACATATTGTGCACTTGTG+GGG + chr2_2:7143258-7143277 None:intergenic 35.0%
!!! GAAAGGACACATCCATTTTT+TGG + chr2_2:7143851-7143870 None:intergenic 35.0%
ACGATAGAGAGAAGATCATA+TGG - chr2_2:7143893-7143912 Msa0234400:intron 35.0%
! GTACCAGGATTTGAAATTTC+TGG - chr2_2:7144391-7144410 Msa0234400:intron 35.0%
AGACCAGAAATTTCAAATCC+TGG + chr2_2:7144397-7144416 None:intergenic 35.0%
ACCATCCACAACAAAATTTG+TGG - chr2_2:7144538-7144557 Msa0234400:intron 35.0%
!! TCCACAAATTTTGTTGTGGA+TGG + chr2_2:7144542-7144561 None:intergenic 35.0%
! GTGATCCACAAATTTTGTTG+TGG + chr2_2:7144546-7144565 None:intergenic 35.0%
CAAAAAATGAAGAGTGAAGG+TGG + chr2_2:7144815-7144834 None:intergenic 35.0%
GAGTAAGATGAATAGAACTG+TGG + chr2_2:7144870-7144889 None:intergenic 35.0%
GAAAAGAACCACCGAAAAAA+AGG + chr2_2:7145086-7145105 None:intergenic 35.0%
! GTCAAGCTTTTTACCAACTT+CGG + chr2_2:7146373-7146392 None:intergenic 35.0%
!! TTTGCAGTTTGTTGACGAAA+AGG - chr2_2:7146535-7146554 Msa0234400:intron 35.0%
TTGTTGACGAAAAGGTTCAA+TGG - chr2_2:7146543-7146562 Msa0234400:intron 35.0%
GTGTATCAACTTTAGTGGAA+TGG - chr2_2:7146627-7146646 Msa0234400:CDS 35.0%
! TGTATTTGTTAAGCAGCGTT+TGG - chr2_2:7146715-7146734 Msa0234400:five_prime_UTR 35.0%
! GTATTTGTTAAGCAGCGTTT+GGG - chr2_2:7146716-7146735 Msa0234400:five_prime_UTR 35.0%
! TATTTGTTAAGCAGCGTTTG+GGG - chr2_2:7146717-7146736 Msa0234400:five_prime_UTR 35.0%
!! GCAGTTTATGCCGATTGTTT+TGG - chr2_2:7139973-7139992 Msa0234400:three_prime_UTR 40.0%
!!! GCCGATTGTTTTGGTGTATT+TGG - chr2_2:7139982-7140001 Msa0234400:three_prime_UTR 40.0%
ATCTTCCTCCACCAATGTTA+TGG - chr2_2:7140035-7140054 Msa0234400:three_prime_UTR 40.0%
CTCCACCAATGTTATGGATA+GGG - chr2_2:7140041-7140060 Msa0234400:three_prime_UTR 40.0%
AACCCTATCCATAACATTGG+TGG + chr2_2:7140046-7140065 None:intergenic 40.0%
TGATAAGTGGAACAGGTATG+AGG - chr2_2:7140135-7140154 Msa0234400:exon 40.0%
! CACCTCTATAGTTTTTCCGT+TGG + chr2_2:7140183-7140202 None:intergenic 40.0%
ACGGAAAAACTATAGAGGTG+AGG - chr2_2:7140183-7140202 Msa0234400:CDS 40.0%
CGGAAAAACTATAGAGGTGA+GGG - chr2_2:7140184-7140203 Msa0234400:CDS 40.0%
!! CAGAGGTATTGTACTGTTCA+TGG - chr2_2:7140582-7140601 Msa0234400:intron 40.0%
! GTGTTGTTAACCTAGACAGT+AGG + chr2_2:7140976-7140995 None:intergenic 40.0%
GTTAACAACACAGATGCTGA+GGG - chr2_2:7140985-7141004 Msa0234400:intron 40.0%
CTGGTGTATACTTGTAACCA+AGG - chr2_2:7141030-7141049 Msa0234400:intron 40.0%
GTATACTTGTAACCAAGGTG+TGG - chr2_2:7141035-7141054 Msa0234400:intron 40.0%
TTGTAACCAAGGTGTGGATA+AGG - chr2_2:7141041-7141060 Msa0234400:intron 40.0%
TGCTCTTCAGATAATTGACC+TGG - chr2_2:7141371-7141390 Msa0234400:intron 40.0%
ATTGACCTGGCAACATTAAC+TGG - chr2_2:7141384-7141403 Msa0234400:intron 40.0%
GGTGCATGTATAATTGCTCT+AGG - chr2_2:7141405-7141424 Msa0234400:intron 40.0%
CTCATAATTACCTGCGATTG+AGG + chr2_2:7141433-7141452 None:intergenic 40.0%
!! CATTAGTATGTGAGAGTACC+AGG - chr2_2:7141507-7141526 Msa0234400:intron 40.0%
ATTCTTGACCCATGGATCTA+TGG - chr2_2:7141540-7141559 Msa0234400:intron 40.0%
CAGACAAACCGTATTGGAAA+TGG + chr2_2:7141596-7141615 None:intergenic 40.0%
CTTGAACAGACAAACCGTAT+TGG + chr2_2:7141602-7141621 None:intergenic 40.0%
! CTTTTCCACTATTGGGACTT+TGG - chr2_2:7141903-7141922 Msa0234400:intron 40.0%
ATTTACAACCAGTGATGACC+TGG - chr2_2:7142005-7142024 Msa0234400:intron 40.0%
TTTGATGCTTCTGATGTGAG+CGG - chr2_2:7142039-7142058 Msa0234400:intron 40.0%
TGCCAATGGAAGAAAGTTAC+TGG - chr2_2:7142079-7142098 Msa0234400:intron 40.0%
GCCAATGGAAGAAAGTTACT+GGG - chr2_2:7142080-7142099 Msa0234400:intron 40.0%
TCCCAGTAACTTTCTTCCAT+TGG + chr2_2:7142084-7142103 None:intergenic 40.0%
GTTGCTGATATGTTGAACAC+CGG - chr2_2:7142120-7142139 Msa0234400:intron 40.0%
! TGCTGCTCTTTTCTTAAAGC+AGG - chr2_2:7142167-7142186 Msa0234400:intron 40.0%
ACTATGTGCTTAGTTGCTTG+GGG - chr2_2:7142412-7142431 Msa0234400:intron 40.0%
TCTTTGTCACAGACATGGTA+TGG - chr2_2:7142590-7142609 Msa0234400:intron 40.0%
AAACTCACACACACACAAAG+TGG - chr2_2:7144366-7144385 Msa0234400:intron 40.0%
! ACATTTTTGCTCGGACTGAT+GGG - chr2_2:7144427-7144446 Msa0234400:intron 40.0%
TGTTGTGTGGTAGAGAGAAA+GGG + chr2_2:7144735-7144754 None:intergenic 40.0%
TTGTTGTGTGGTAGAGAGAA+AGG + chr2_2:7144736-7144755 None:intergenic 40.0%
GATGATTGAATACTGAGGAC+TGG + chr2_2:7144929-7144948 None:intergenic 40.0%
GTAGATGCATTACAACGAAG+TGG + chr2_2:7145053-7145072 None:intergenic 40.0%
!!! CATCTCTTCCTTTTTTTCGG+TGG - chr2_2:7145075-7145094 Msa0234400:intron 40.0%
AGTTGGAATAACATTGGGTC+AGG - chr2_2:7146335-7146354 Msa0234400:intron 40.0%
GTTGGAATAACATTGGGTCA+GGG - chr2_2:7146336-7146355 Msa0234400:intron 40.0%
TTGGAATAACATTGGGTCAG+GGG - chr2_2:7146337-7146356 Msa0234400:intron 40.0%
!! TGGATGCATATTGATTTGGC+TGG - chr2_2:7146563-7146582 Msa0234400:intron 40.0%
! CTTTAGTGGAATGGGTATTG+AGG - chr2_2:7146636-7146655 Msa0234400:CDS 40.0%
TCATAGGGTGGGAAAAGTAA+TGG + chr2_2:7146848-7146867 None:intergenic 40.0%
!! ATTACTTTTCCCACCCTATG+AGG - chr2_2:7146847-7146866 Msa0234400:five_prime_UTR 40.0%
CCTATCCATAACATTGGTGG+AGG + chr2_2:7140043-7140062 None:intergenic 45.0%
CCTCCACCAATGTTATGGAT+AGG - chr2_2:7140040-7140059 Msa0234400:three_prime_UTR 45.0%
GACATTGTCACAGCTTCCAA+CGG - chr2_2:7140164-7140183 Msa0234400:CDS 45.0%
TGGACGTTGACAACGATACT+TGG + chr2_2:7140655-7140674 None:intergenic 45.0%
! AAGTATCGTTGTCAACGTCC+AGG - chr2_2:7140654-7140673 Msa0234400:intron 45.0%
GTCAGCATATCCTACTGTCT+AGG - chr2_2:7140963-7140982 Msa0234400:intron 45.0%
GGTTAACAACACAGATGCTG+AGG - chr2_2:7140984-7141003 Msa0234400:intron 45.0%
TGCATACCTTATCCACACCT+TGG + chr2_2:7141050-7141069 None:intergenic 45.0%
AGTGCCTCTATCTACTGCTA+TGG - chr2_2:7141318-7141337 Msa0234400:intron 45.0%
ATGCACCAGTTAATGTTGCC+AGG + chr2_2:7141392-7141411 None:intergenic 45.0%
CTCCATTATGTGAGAGTGAG+CGG + chr2_2:7141632-7141651 None:intergenic 45.0%
! CTCACTCTCACATAATGGAG+AGG - chr2_2:7141632-7141651 Msa0234400:intron 45.0%
GAAAGACAAGACCTAAGCTC+TGG - chr2_2:7141845-7141864 Msa0234400:intron 45.0%
TTCTTTAGCCAGGTCATCAC+TGG + chr2_2:7142016-7142035 None:intergenic 45.0%
TTGATGCTTCTGATGTGAGC+GGG - chr2_2:7142040-7142059 Msa0234400:intron 45.0%
GAAACTATGGAGGATGCCAA+TGG - chr2_2:7142065-7142084 Msa0234400:intron 45.0%
AACAATGCTCCATTGCAACC+AGG - chr2_2:7142225-7142244 Msa0234400:intron 45.0%
TCCACGTGTAACACAGTAGA+GGG + chr2_2:7142319-7142338 None:intergenic 45.0%
ATCCACGTGTAACACAGTAG+AGG + chr2_2:7142320-7142339 None:intergenic 45.0%
CTACTGTGTTACACGTGGAT+TGG - chr2_2:7142320-7142339 Msa0234400:intron 45.0%
!! GTGTTACACGTGGATTGGAT+TGG - chr2_2:7142325-7142344 Msa0234400:intron 45.0%
!! ACACGTGGATTGGATTGGAT+TGG - chr2_2:7142330-7142349 Msa0234400:intron 45.0%
TGTAGTCCTGCTGCACATTT+AGG - chr2_2:7142442-7142461 Msa0234400:intron 45.0%
CCTAATCCTAAATGTGCAGC+AGG + chr2_2:7142451-7142470 None:intergenic 45.0%
! CCTGCTGCACATTTAGGATT+AGG - chr2_2:7142448-7142467 Msa0234400:intron 45.0%
!! ACTCAGATGGGCTATCAGTT+AGG - chr2_2:7143279-7143298 Msa0234400:intron 45.0%
ACACACAAAGTGGATGTACC+AGG - chr2_2:7144376-7144395 Msa0234400:intron 45.0%
! GACATTTTTGCTCGGACTGA+TGG - chr2_2:7144426-7144445 Msa0234400:intron 45.0%
GTTGTGGATGGTGATTTCAC+AGG + chr2_2:7144530-7144549 None:intergenic 45.0%
GATGCATTACAACGAAGTGG+AGG + chr2_2:7145050-7145069 None:intergenic 45.0%
TGCTGCAAGTATGACAGTAG+TGG + chr2_2:7145110-7145129 None:intergenic 45.0%
GAAAAGACACAGGATGCAGA+TGG + chr2_2:7145829-7145848 None:intergenic 45.0%
!! TATATATATATATATATAGA+GGG + chr2_2:7143756-7143775 None:intergenic 5.0%
!! ATATATATATATATATATAG+AGG + chr2_2:7143757-7143776 None:intergenic 5.0%
!!! TTTTTTATTTTATTTTTTTG+AGG + chr2_2:7144651-7144670 None:intergenic 5.0%
!!! TTTTTATAAAATAAATACAT+GGG + chr2_2:7145575-7145594 None:intergenic 5.0%
!!! ATTTTTATAAAATAAATACA+TGG + chr2_2:7145576-7145595 None:intergenic 5.0%
GAAGCTGTGACAATGTCTCC+GGG + chr2_2:7140161-7140180 None:intergenic 50.0%
GGAAGCTGTGACAATGTCTC+CGG + chr2_2:7140162-7140181 None:intergenic 50.0%
TCAAGAATAACCCTGCACCC+TGG + chr2_2:7141528-7141547 None:intergenic 50.0%
GCAGGGTTATTCTTGACCCA+TGG - chr2_2:7141532-7141551 Msa0234400:intron 50.0%
CTCCGCTCACTCTCACATAA+TGG - chr2_2:7141627-7141646 Msa0234400:intron 50.0%
AGACGTCTCTTCCAGAGCTT+AGG + chr2_2:7141859-7141878 None:intergenic 50.0%
TGATGCTTCTGATGTGAGCG+GGG - chr2_2:7142041-7142060 Msa0234400:intron 50.0%
ATGTGAGCGGGGAGAAACTA+TGG - chr2_2:7142052-7142071 Msa0234400:intron 50.0%
GCTGATATGTTGAACACCGG+TGG - chr2_2:7142123-7142142 Msa0234400:intron 50.0%
GTAGCACTACCTGGTTGCAA+TGG + chr2_2:7142237-7142256 None:intergenic 50.0%
CCACGTGTAACACAGTAGAG+GGG + chr2_2:7142318-7142337 None:intergenic 50.0%
! GCAAAACGTGTGTCGTTGTG+CGG - chr2_2:7142710-7142729 Msa0234400:intron 50.0%
GAGAAAGGGGAGTTGTTGTG+TGG + chr2_2:7144748-7144767 None:intergenic 50.0%
CTGAGGAGGGAAAGAGAAAG+GGG + chr2_2:7144761-7144780 None:intergenic 50.0%
CCTGAGGAGGGAAAGAGAAA+GGG + chr2_2:7144762-7144781 None:intergenic 50.0%
ACCTGAGGAGGGAAAGAGAA+AGG + chr2_2:7144763-7144782 None:intergenic 50.0%
GGTAGAGAAGAACCTGAGGA+GGG + chr2_2:7144774-7144793 None:intergenic 50.0%
TGGTAGAGAAGAACCTGAGG+AGG + chr2_2:7144775-7144794 None:intergenic 50.0%
GTGTGGTAGAGAAGAACCTG+AGG + chr2_2:7144778-7144797 None:intergenic 50.0%
AATGAAGAGTGAAGGTGGGC+TGG + chr2_2:7144810-7144829 None:intergenic 50.0%
GGCTATCAGAGACACTCTGT+CGG - chr2_2:7144991-7145010 Msa0234400:intron 50.0%
GGGTAGTGTAAGTCCGAAGT+TGG - chr2_2:7146357-7146376 Msa0234400:intron 50.0%
!! TTGATTTGGCTGGTCCTGTG+TGG - chr2_2:7146573-7146592 Msa0234400:intron 50.0%
!!! CGCTGCTTTTCATTCCACAC+AGG + chr2_2:7146590-7146609 None:intergenic 50.0%
GAAAAGCAGCGTTGTGCAAC+TGG - chr2_2:7146599-7146618 Msa0234400:intron 50.0%
CAGCGTTGTGCAACTGGATT+TGG - chr2_2:7146605-7146624 Msa0234400:intron 50.0%
AGTGGAACAGGTATGAGGCC+CGG - chr2_2:7140140-7140159 Msa0234400:exon 55.0%
ACAACACAGATGCTGAGGGC+AGG - chr2_2:7140989-7141008 Msa0234400:intron 55.0%
GCTTACTCTGGCTGATGCTC+TGG - chr2_2:7141011-7141030 Msa0234400:intron 55.0%
!! ATGTGAGAGTACCAGGGTGC+AGG - chr2_2:7141514-7141533 Msa0234400:intron 55.0%
!! TGTGAGAGTACCAGGGTGCA+GGG - chr2_2:7141515-7141534 Msa0234400:intron 55.0%
TGAGCGGGGAGAAACTATGG+AGG - chr2_2:7142055-7142074 Msa0234400:intron 55.0%
TTGAACACCGGTGGTCGTCA+AGG - chr2_2:7142132-7142151 Msa0234400:intron 55.0%
CCCCTCTACTGTGTTACACG+TGG - chr2_2:7142315-7142334 Msa0234400:intron 55.0%
CGAAATACCCGTGCTGAGCA+CGG - chr2_2:7142666-7142685 Msa0234400:intron 55.0%
GAAATACCCGTGCTGAGCAC+GGG - chr2_2:7142667-7142686 Msa0234400:intron 55.0%
! ACGACACACGTTTTGCCGTG+CGG + chr2_2:7142706-7142725 None:intergenic 55.0%
TTGTGCGGTGAGGTGTGTGT+CGG - chr2_2:7142725-7142744 Msa0234400:intron 55.0%
CCCTTTCTCTTTCCCTCCTC+AGG - chr2_2:7144759-7144778 Msa0234400:CDS 55.0%
AGTGGAGGCAAATTCCAGCG+CGG + chr2_2:7145023-7145042 None:intergenic 55.0%
CAACGAAGTGGAGGCAACAG+TGG + chr2_2:7145041-7145060 None:intergenic 55.0%
TGCTGAGGGCAGGCTTACTC+TGG - chr2_2:7140999-7141018 Msa0234400:intron 60.0%
!! GCTCTAGGACCCTCAATCGC+AGG - chr2_2:7141420-7141439 Msa0234400:intron 60.0%
AACACCGGTGGTCGTCAAGG+TGG - chr2_2:7142135-7142154 Msa0234400:intron 60.0%
AGCACCACCTTGACGACCAC+CGG + chr2_2:7142142-7142161 None:intergenic 60.0%
! ACGTGTGTCGTTGTGCGGTG+AGG - chr2_2:7142715-7142734 Msa0234400:intron 60.0%
!! TGGGCTGGTGGTGGTTTGTG+TGG + chr2_2:7144795-7144814 None:intergenic 60.0%
!! GAAGAGTGAAGGTGGGCTGG+TGG + chr2_2:7144807-7144826 None:intergenic 60.0%
CGAAGTGGAGGCAACAGTGG+AGG + chr2_2:7145038-7145057 None:intergenic 60.0%
!! GAGTGAAGGTGGGCTGGTGG+TGG + chr2_2:7144804-7144823 None:intergenic 65.0%
GGAGGCAAATTCCAGCGCGG+TGG + chr2_2:7145020-7145039 None:intergenic 65.0%
GCGCTACCCGTGCTCAGCAC+GGG + chr2_2:7142676-7142695 None:intergenic 70.0%
CGCGCTACCCGTGCTCAGCA+CGG + chr2_2:7142677-7142696 None:intergenic 70.0%
CGTGCTGAGCACGGGTAGCG+CGG - chr2_2:7142675-7142694 Msa0234400:intron 70.0%
TCTGTCGGCAACCACCGCGC+TGG - chr2_2:7145006-7145025 Msa0234400:intron 70.0%
! GGTAGCGCGGCTGCGCCGCA+CGG - chr2_2:7142688-7142707 Msa0234400:intron 80.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 7139943 7146876 7139943 ID=Msa0234400;Name=Msa0234400
chr2_2 mRNA 7139943 7146876 7139943 ID=Msa0234400-mRNA-1;Parent=Msa0234400;Name=Msa0234400-mRNA-1;_AED=0.16;_eAED=0.16;_QI=191|1|1|1|1|1|5|206|173
chr2_2 exon 7139943 7140277 7139943 ID=Msa0234400-mRNA-1:exon:3088;Parent=Msa0234400-mRNA-1
chr2_2 exon 7144631 7144818 7144631 ID=Msa0234400-mRNA-1:exon:3087;Parent=Msa0234400-mRNA-1
chr2_2 exon 7145378 7145438 7145378 ID=Msa0234400-mRNA-1:exon:3086;Parent=Msa0234400-mRNA-1
chr2_2 exon 7145757 7145834 7145757 ID=Msa0234400-mRNA-1:exon:3085;Parent=Msa0234400-mRNA-1
chr2_2 exon 7146620 7146876 7146620 ID=Msa0234400-mRNA-1:exon:3084;Parent=Msa0234400-mRNA-1
chr2_2 five_prime_UTR 7146686 7146876 7146686 ID=Msa0234400-mRNA-1:five_prime_utr;Parent=Msa0234400-mRNA-1
chr2_2 CDS 7146620 7146685 7146620 ID=Msa0234400-mRNA-1:cds;Parent=Msa0234400-mRNA-1
chr2_2 CDS 7145757 7145834 7145757 ID=Msa0234400-mRNA-1:cds;Parent=Msa0234400-mRNA-1
chr2_2 CDS 7145378 7145438 7145378 ID=Msa0234400-mRNA-1:cds;Parent=Msa0234400-mRNA-1
chr2_2 CDS 7144631 7144818 7144631 ID=Msa0234400-mRNA-1:cds;Parent=Msa0234400-mRNA-1
chr2_2 CDS 7140149 7140277 7140149 ID=Msa0234400-mRNA-1:cds;Parent=Msa0234400-mRNA-1
chr2_2 three_prime_UTR 7139943 7140148 7139943 ID=Msa0234400-mRNA-1:three_prime_utr;Parent=Msa0234400-mRNA-1
Gene Sequence

>Msa0234400

ATGATAAGTGGAACAGGTATGAGGCCCGGAGACATTGTCACAGCTTCCAACGGAAAAACTATAGAGGTTAACAACACAGATGCTGAGGGCAGGCTTACTCTGGCTGATGCTCTGGTGTATACTTGTAACCAAGGTGTGGATAAGATAATTGACCTGGCAACATTAACTGGTGCATGTATAATTGCTCTAGGACCCTCAATCGCAGGTGCATTTACAACCAGTGATGACCTGGCTAAAGAAGTTTTTGATGCTTCTGATGTGAGCGGGGAGAAACTATGGAGGATGCCAATGGAAGAAAGTTACTGGGAATCAATGAAATCAGGAGTTGCTGATATGTTGAACACCGGTGGTCGTCAAGGTGGTGCTATCACTGCTGCTCTTTTCTTAAAGCAGTTTGTTGACGAAAAGGTTCAATGGATGCATATTGATTTGGCTGGTCCTGTGTGGAATGAAAAGCAGCGTTGTGCAACTGGATTTGGTGTATCAACTTTAGTGGAATGGGTATTGAGGAATGCATCTTAA

Protein sequence

>Msa0234400

MISGTGMRPGDIVTASNGKTIEVNNTDAEGRLTLADALVYTCNQGVDKIIDLATLTGACIIALGPSIAGAFTTSDDLAKEVFDASDVSGEKLWRMPMEESYWESMKSGVADMLNTGGRQGGAITAALFLKQFVDEKVQWMHIDLAGPVWNEKQRCATGFGVSTLVEWVLRNAS*