AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0064310


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0064310 MtrunA17_Chr5g0418001 96.744 215 4 2 1 215 1 212 3.11e-152 421
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0064310 AT5G43750.1 61.765 204 74 2 12 215 13 212 1.23e-88 260

Find 59 sgRNAs with CRISPR-Local

Find 300 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTAATTTCAGGAACATTT+TGG 0.124367 1_2:-25342382 Msa0064310:intron
GTTTGCTATAGAATAGAAAT+AGG 0.233160 1_2:+25341375 None:intergenic
TTCCCACCAGCCATTGCTGC+TGG 0.238546 1_2:-25341900 Msa0064310:CDS
TGGGATTTCAATGACAAATA+TGG 0.271183 1_2:-25341588 Msa0064310:CDS
CTTTCCATGTTGTATATTTG+AGG 0.297169 1_2:+25341657 None:intergenic
CTCATGCAGGGCTTATTTCA+TGG 0.312679 1_2:-25341926 Msa0064310:intron
GAATGCCATTAGTGCGAAAT+TGG 0.318148 1_2:+25343177 None:intergenic
GTTGACCAATTTCGCACTAA+TGG 0.350257 1_2:-25343182 Msa0064310:CDS
GGTCAACAGGATCTTCATTA+AGG 0.351255 1_2:+25343198 None:intergenic
ACTATAATTCCATGAGCATA+TGG 0.355011 1_2:-25341608 Msa0064310:CDS
TTTGAGTATGGAATATTTGA+TGG 0.360719 1_2:-25343041 Msa0064310:CDS
CCAACACCACTCAACTTTCA+TGG 0.373078 1_2:-25343296 Msa0064310:CDS
ACAAAATTCTTGTTGAATGC+TGG 0.374097 1_2:-25343242 Msa0064310:CDS
ATGACAAATATGGAGACCTT+TGG 0.379641 1_2:-25341578 Msa0064310:CDS
TCAAAGTGATGAGGTTGATC+AGG 0.402133 1_2:+25341681 None:intergenic
ATATAGGAAGAATTTGAGTA+TGG 0.403141 1_2:-25343053 Msa0064310:intron
TGGGGTATTCTTCGATGTTC+CGG 0.405466 1_2:-25341880 Msa0064310:intron
TGACAAATATGGAGACCTTT+GGG 0.407790 1_2:-25341577 Msa0064310:CDS
TCCCACCAGCCATTGCTGCT+GGG 0.411279 1_2:-25341899 Msa0064310:CDS
TGTTGAGTTATTGTTACTCT+TGG 0.429120 1_2:+25343262 None:intergenic
TTAAAATATAATGAATATGA+AGG 0.429838 1_2:-25341465 Msa0064310:three_prime_UTR
TTTGCTATAGAATAGAAATA+GGG 0.431324 1_2:+25341376 None:intergenic
GAGTATTTGTTCATTGGAGC+AGG 0.434030 1_2:-25341744 Msa0064310:CDS
TTAGTGCGAAATTGGTCAAC+AGG 0.452985 1_2:+25343185 None:intergenic
AGTTTGGATGGAGTGATGAT+AGG 0.472201 1_2:+25343341 None:intergenic
CCCACCAGCCATTGCTGCTG+GGG 0.474226 1_2:-25341898 Msa0064310:CDS
GGTCATCATACTTTCAATGA+AGG 0.504424 1_2:-25343020 Msa0064310:CDS
CAAATATACAACATGGAAAG+AGG 0.518390 1_2:-25341654 Msa0064310:CDS
CTATAATTCCATGAGCATAT+GGG 0.524970 1_2:-25341607 Msa0064310:CDS
TTGGATGGAGTGATGATAGG+AGG 0.525418 1_2:+25343344 None:intergenic
CCATGAAAGTTGAGTGGTGT+TGG 0.531670 1_2:+25343296 None:intergenic
AATGAAGGAGAAGAAAAGAA+AGG 0.531960 1_2:-25343005 Msa0064310:intron
ATTGAAATCCCATATGCTCA+TGG 0.535585 1_2:+25341599 None:intergenic
ACAGGATCTTCATTAAGGTC+AGG 0.545810 1_2:+25343203 None:intergenic
GAGTGGTGTTGGAGATGAGA+AGG 0.548650 1_2:+25343307 None:intergenic
TGGATGGAGTGATGATAGGA+GGG 0.548771 1_2:+25343345 None:intergenic
AACATACCTTGAAATCCAGT+GGG 0.550957 1_2:+25342323 None:intergenic
AGAAAAGTAACAAATTTACA+AGG 0.555667 1_2:+25341438 None:intergenic
AATACCCCAGCAGCAATGGC+TGG 0.556419 1_2:+25341894 None:intergenic
GAAGAATACCCCAGCAGCAA+TGG 0.556648 1_2:+25341890 None:intergenic
CCCCAGCAGCAATGGCTGGT+GGG 0.565163 1_2:+25341898 None:intergenic
ATGTGTCAGACTTGGTTGGT+TGG 0.567628 1_2:+25343395 None:intergenic
ACCCCAGCAGCAATGGCTGG+TGG 0.569943 1_2:+25341897 None:intergenic
ATGGATGATGTAATAGCAGT+AGG 0.572923 1_2:-25342350 Msa0064310:CDS
AGGAGGGACAAGTGAGAGTG+AGG 0.582918 1_2:+25343361 None:intergenic
ATTTGAGGTTCAAAGTGATG+AGG 0.590006 1_2:+25341672 None:intergenic
TAGTTGCTGGGTGATAAAAG+TGG 0.591697 1_2:-25343438 None:intergenic
CGCCATGTGTCAGACTTGGT+TGG 0.594565 1_2:+25343391 None:intergenic
AGTATTTGTTCATTGGAGCA+GGG 0.597436 1_2:-25341743 Msa0064310:CDS
ATAGCGCCATGTGTCAGACT+TGG 0.620326 1_2:+25343387 None:intergenic
AAACATACCTTGAAATCCAG+TGG 0.629247 1_2:+25342322 None:intergenic
TCTTGATAGTAAAATCCCAA+AGG 0.630483 1_2:+25341562 None:intergenic
GAAAAGTAACAAATTTACAA+GGG 0.674092 1_2:+25341439 None:intergenic
TGAACCTCAAATATACAACA+TGG 0.679208 1_2:-25341661 Msa0064310:CDS
AACCAACCAAGTCTGACACA+TGG 0.684292 1_2:-25343393 Msa0064310:exon
CATACCTTGAAATCCAGTGG+GGG 0.685937 1_2:+25342325 None:intergenic
ATACCTTGAAATCCAGTGGG+GGG 0.705939 1_2:+25342326 None:intergenic
ACATACCTTGAAATCCAGTG+GGG 0.718019 1_2:+25342324 None:intergenic
AATATGCCATGAAAGTTGAG+TGG 0.727294 1_2:+25343290 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTAAAATATAAATAAA+GGG + chr1_2:25342067-25342086 None:intergenic 0.0%
!! AAAAATTAAAATATAAATAA+AGG + chr1_2:25342068-25342087 None:intergenic 0.0%
!!! TATTTATATTTTAATTTTTA+AGG - chr1_2:25342069-25342088 Msa0064310:intron 0.0%
!! AAAATTAAAATATAAATAAA+GGG + chr1_2:25342067-25342086 None:intergenic 0.0%
!! AAAAATTAAAATATAAATAA+AGG + chr1_2:25342068-25342087 None:intergenic 0.0%
!!! TATTTATATTTTAATTTTTA+AGG - chr1_2:25342069-25342088 Msa0064310:intron 0.0%
!! TAAATATGAAAAAAAAATAC+AGG + chr1_2:25341597-25341616 None:intergenic 10.0%
!!! ATATTTTTATTTTGAAAAAC+TGG - chr1_2:25341873-25341892 Msa0064310:intron 10.0%
!! AGTTAGAAAATTATATATAT+TGG + chr1_2:25342458-25342477 None:intergenic 10.0%
!! TTAAAATATAATGAATATGA+AGG - chr1_2:25343281-25343300 Msa0064310:CDS 10.0%
!! TAAATATGAAAAAAAAATAC+AGG + chr1_2:25341597-25341616 None:intergenic 10.0%
!!! ATATTTTTATTTTGAAAAAC+TGG - chr1_2:25341873-25341892 Msa0064310:intron 10.0%
!! AGTTAGAAAATTATATATAT+TGG + chr1_2:25342458-25342477 None:intergenic 10.0%
!! TTAAAATATAATGAATATGA+AGG - chr1_2:25343281-25343300 Msa0064310:CDS 10.0%
!!! ATTTTTAAGGAATTATTACT+AGG - chr1_2:25342082-25342101 Msa0064310:intron 15.0%
!!! ATTTTTAAGGAATTATTACT+AGG - chr1_2:25342082-25342101 Msa0064310:intron 15.0%
!! ATATGAAAAAAAAATACAGG+TGG + chr1_2:25341594-25341613 None:intergenic 20.0%
!!! TTGTTTTGTGTTGATTATAT+AGG - chr1_2:25341677-25341696 Msa0064310:CDS 20.0%
!!! TCAATCACTTTGTTTTTTAA+TGG - chr1_2:25341816-25341835 Msa0064310:intron 20.0%
!!! CTTTGTTTTTTAATGGAAAT+TGG - chr1_2:25341823-25341842 Msa0064310:intron 20.0%
!! TTCATAATGTTAGAATGATT+AGG - chr1_2:25342149-25342168 Msa0064310:intron 20.0%
!!! CAATTAACATTTAGAATTAC+CGG + chr1_2:25342888-25342907 None:intergenic 20.0%
!!! TTTTACTATCAAGAAGAATA+AGG - chr1_2:25343193-25343212 Msa0064310:CDS 20.0%
!!! CTTTTGTCTATATATATACA+TGG - chr1_2:25343252-25343271 Msa0064310:CDS 20.0%
!! GAAAAGTAACAAATTTACAA+GGG + chr1_2:25343310-25343329 None:intergenic 20.0%
!! AGAAAAGTAACAAATTTACA+AGG + chr1_2:25343311-25343330 None:intergenic 20.0%
!!! TTTGCTATAGAATAGAAATA+GGG + chr1_2:25343373-25343392 None:intergenic 20.0%
!!! ACATACATTTTTTTAGACAA+GGG + chr1_2:25343418-25343437 None:intergenic 20.0%
!! TCTAAAAAAATGTATGTGTT+AGG - chr1_2:25343421-25343440 Msa0064310:five_prime_UTR 20.0%
!! ATATGAAAAAAAAATACAGG+TGG + chr1_2:25341594-25341613 None:intergenic 20.0%
!!! TTGTTTTGTGTTGATTATAT+AGG - chr1_2:25341677-25341696 Msa0064310:CDS 20.0%
!!! TCAATCACTTTGTTTTTTAA+TGG - chr1_2:25341816-25341835 Msa0064310:intron 20.0%
!!! CTTTGTTTTTTAATGGAAAT+TGG - chr1_2:25341823-25341842 Msa0064310:intron 20.0%
!! TTCATAATGTTAGAATGATT+AGG - chr1_2:25342149-25342168 Msa0064310:intron 20.0%
!!! CAATTAACATTTAGAATTAC+CGG + chr1_2:25342888-25342907 None:intergenic 20.0%
!!! TTTTACTATCAAGAAGAATA+AGG - chr1_2:25343193-25343212 Msa0064310:CDS 20.0%
!!! CTTTTGTCTATATATATACA+TGG - chr1_2:25343252-25343271 Msa0064310:CDS 20.0%
!! GAAAAGTAACAAATTTACAA+GGG + chr1_2:25343310-25343329 None:intergenic 20.0%
!! AGAAAAGTAACAAATTTACA+AGG + chr1_2:25343311-25343330 None:intergenic 20.0%
!!! TTTGCTATAGAATAGAAATA+GGG + chr1_2:25343373-25343392 None:intergenic 20.0%
!!! ACATACATTTTTTTAGACAA+GGG + chr1_2:25343418-25343437 None:intergenic 20.0%
!! TCTAAAAAAATGTATGTGTT+AGG - chr1_2:25343421-25343440 Msa0064310:five_prime_UTR 20.0%
! ATATAGGAAGAATTTGAGTA+TGG - chr1_2:25341693-25341712 Msa0064310:CDS 25.0%
! TTTGAGTATGGAATATTTGA+TGG - chr1_2:25341705-25341724 Msa0064310:CDS 25.0%
!!! TTTTGAAAAACTGGAGTATA+AGG - chr1_2:25341882-25341901 Msa0064310:CDS 25.0%
!! AATTTTCATTGTATTGTCGA+AGG - chr1_2:25341928-25341947 Msa0064310:intron 25.0%
! ATATAAATAAAGGGGAAACA+GGG + chr1_2:25342058-25342077 None:intergenic 25.0%
! AATATAAATAAAGGGGAAAC+AGG + chr1_2:25342059-25342078 None:intergenic 25.0%
! TTGCAACAGTAAAATTTGAT+GGG - chr1_2:25342115-25342134 Msa0064310:intron 25.0%
! AAAGTTTGAATTTCGATTGA+AGG - chr1_2:25342243-25342262 Msa0064310:intron 25.0%
!! TGTTAATTTCAGGAACATTT+TGG - chr1_2:25342364-25342383 Msa0064310:CDS 25.0%
!! GTTAATTTCAGGAACATTTT+GGG - chr1_2:25342365-25342384 Msa0064310:CDS 25.0%
!! TTAATTTCAGGAACATTTTG+GGG - chr1_2:25342366-25342385 Msa0064310:CDS 25.0%
!!! GCATGTTTTTAAAAACTTGA+CGG - chr1_2:25342488-25342507 Msa0064310:intron 25.0%
!!! CATGTTTTTAAAAACTTGAC+GGG - chr1_2:25342489-25342508 Msa0064310:intron 25.0%
! ACTAATGAATAAATAAGTCG+TGG - chr1_2:25342573-25342592 Msa0064310:intron 25.0%
! AATGATTACAGTCAAAATTG+TGG + chr1_2:25342768-25342787 None:intergenic 25.0%
! AGAAATCAATTGATACATTG+AGG - chr1_2:25342933-25342952 Msa0064310:intron 25.0%
! TAAGTACAATGTATGTTTCA+GGG - chr1_2:25342978-25342997 Msa0064310:intron 25.0%
!! TGTATTTTGCATTATTGAGA+TGG - chr1_2:25343037-25343056 Msa0064310:CDS 25.0%
!!! GTTTGCTATAGAATAGAAAT+AGG + chr1_2:25343374-25343393 None:intergenic 25.0%
!!! CATACATTTTTTTAGACAAG+GGG + chr1_2:25343417-25343436 None:intergenic 25.0%
!!! CACATACATTTTTTTAGACA+AGG + chr1_2:25343419-25343438 None:intergenic 25.0%
! ATATAGGAAGAATTTGAGTA+TGG - chr1_2:25341693-25341712 Msa0064310:CDS 25.0%
! TTTGAGTATGGAATATTTGA+TGG - chr1_2:25341705-25341724 Msa0064310:CDS 25.0%
!!! TTTTGAAAAACTGGAGTATA+AGG - chr1_2:25341882-25341901 Msa0064310:CDS 25.0%
!! AATTTTCATTGTATTGTCGA+AGG - chr1_2:25341928-25341947 Msa0064310:intron 25.0%
! ATATAAATAAAGGGGAAACA+GGG + chr1_2:25342058-25342077 None:intergenic 25.0%
! AATATAAATAAAGGGGAAAC+AGG + chr1_2:25342059-25342078 None:intergenic 25.0%
! TTGCAACAGTAAAATTTGAT+GGG - chr1_2:25342115-25342134 Msa0064310:intron 25.0%
! AAAGTTTGAATTTCGATTGA+AGG - chr1_2:25342243-25342262 Msa0064310:intron 25.0%
!! TGTTAATTTCAGGAACATTT+TGG - chr1_2:25342364-25342383 Msa0064310:CDS 25.0%
!! GTTAATTTCAGGAACATTTT+GGG - chr1_2:25342365-25342384 Msa0064310:CDS 25.0%
!! TTAATTTCAGGAACATTTTG+GGG - chr1_2:25342366-25342385 Msa0064310:CDS 25.0%
!!! GCATGTTTTTAAAAACTTGA+CGG - chr1_2:25342488-25342507 Msa0064310:intron 25.0%
!!! CATGTTTTTAAAAACTTGAC+GGG - chr1_2:25342489-25342508 Msa0064310:intron 25.0%
! ACTAATGAATAAATAAGTCG+TGG - chr1_2:25342573-25342592 Msa0064310:intron 25.0%
! AATGATTACAGTCAAAATTG+TGG + chr1_2:25342768-25342787 None:intergenic 25.0%
! AGAAATCAATTGATACATTG+AGG - chr1_2:25342933-25342952 Msa0064310:intron 25.0%
! TAAGTACAATGTATGTTTCA+GGG - chr1_2:25342978-25342997 Msa0064310:intron 25.0%
!! TGTATTTTGCATTATTGAGA+TGG - chr1_2:25343037-25343056 Msa0064310:CDS 25.0%
!!! GTTTGCTATAGAATAGAAAT+AGG + chr1_2:25343374-25343393 None:intergenic 25.0%
!!! CATACATTTTTTTAGACAAG+GGG + chr1_2:25343417-25343436 None:intergenic 25.0%
!!! CACATACATTTTTTTAGACA+AGG + chr1_2:25343419-25343438 None:intergenic 25.0%
TGTTGAGTTATTGTTACTCT+TGG + chr1_2:25341487-25341506 None:intergenic 30.0%
ACAAAATTCTTGTTGAATGC+TGG - chr1_2:25341504-25341523 Msa0064310:three_prime_UTR 30.0%
AATGAAGGAGAAGAAAAGAA+AGG - chr1_2:25341741-25341760 Msa0064310:CDS 30.0%
TATAAATAAAGGGGAAACAG+GGG + chr1_2:25342057-25342076 None:intergenic 30.0%
CTTGCAACAGTAAAATTTGA+TGG - chr1_2:25342114-25342133 Msa0064310:intron 30.0%
AGGAATAAGATTACCTACAA+AGG - chr1_2:25342263-25342282 Msa0064310:intron 30.0%
AATAAGATTACCTACAAAGG+AGG - chr1_2:25342266-25342285 Msa0064310:intron 30.0%
ATAAGATTACCTACAAAGGA+GGG - chr1_2:25342267-25342286 Msa0064310:intron 30.0%
TTTCCTAACAAAGTTCATGA+TGG - chr1_2:25342340-25342359 Msa0064310:CDS 30.0%
!! TCATGATGGATGTTAATTTC+AGG - chr1_2:25342354-25342373 Msa0064310:CDS 30.0%
!!! TTTCATGTTGCTGATTTTTG+TGG + chr1_2:25342720-25342739 None:intergenic 30.0%
TTCTAATTTGATTCTCATGC+AGG - chr1_2:25342807-25342826 Msa0064310:intron 30.0%
TCTAATTTGATTCTCATGCA+GGG - chr1_2:25342808-25342827 Msa0064310:intron 30.0%
CTGAAACATACATTGTACTT+AGG + chr1_2:25342979-25342998 None:intergenic 30.0%
CTAAGTACAATGTATGTTTC+AGG - chr1_2:25342977-25342996 Msa0064310:intron 30.0%
AAGTACAATGTATGTTTCAG+GGG - chr1_2:25342979-25342998 Msa0064310:intron 30.0%
TGAACCTCAAATATACAACA+TGG - chr1_2:25343085-25343104 Msa0064310:intron 30.0%
CTTTCCATGTTGTATATTTG+AGG + chr1_2:25343092-25343111 None:intergenic 30.0%
CAAATATACAACATGGAAAG+AGG - chr1_2:25343092-25343111 Msa0064310:intron 30.0%
ACTATAATTCCATGAGCATA+TGG - chr1_2:25343138-25343157 Msa0064310:intron 30.0%
CTATAATTCCATGAGCATAT+GGG - chr1_2:25343139-25343158 Msa0064310:intron 30.0%
TGGGATTTCAATGACAAATA+TGG - chr1_2:25343158-25343177 Msa0064310:intron 30.0%
! TCTTGATAGTAAAATCCCAA+AGG + chr1_2:25343187-25343206 None:intergenic 30.0%
TATGTGTTAGGATTCTTTCA+GGG - chr1_2:25343433-25343452 Msa0064310:five_prime_UTR 30.0%
TGTTGAGTTATTGTTACTCT+TGG + chr1_2:25341487-25341506 None:intergenic 30.0%
ACAAAATTCTTGTTGAATGC+TGG - chr1_2:25341504-25341523 Msa0064310:three_prime_UTR 30.0%
AATGAAGGAGAAGAAAAGAA+AGG - chr1_2:25341741-25341760 Msa0064310:CDS 30.0%
TATAAATAAAGGGGAAACAG+GGG + chr1_2:25342057-25342076 None:intergenic 30.0%
CTTGCAACAGTAAAATTTGA+TGG - chr1_2:25342114-25342133 Msa0064310:intron 30.0%
AGGAATAAGATTACCTACAA+AGG - chr1_2:25342263-25342282 Msa0064310:intron 30.0%
AATAAGATTACCTACAAAGG+AGG - chr1_2:25342266-25342285 Msa0064310:intron 30.0%
ATAAGATTACCTACAAAGGA+GGG - chr1_2:25342267-25342286 Msa0064310:intron 30.0%
TTTCCTAACAAAGTTCATGA+TGG - chr1_2:25342340-25342359 Msa0064310:CDS 30.0%
!! TCATGATGGATGTTAATTTC+AGG - chr1_2:25342354-25342373 Msa0064310:CDS 30.0%
!!! TTTCATGTTGCTGATTTTTG+TGG + chr1_2:25342720-25342739 None:intergenic 30.0%
TTCTAATTTGATTCTCATGC+AGG - chr1_2:25342807-25342826 Msa0064310:intron 30.0%
TCTAATTTGATTCTCATGCA+GGG - chr1_2:25342808-25342827 Msa0064310:intron 30.0%
CTGAAACATACATTGTACTT+AGG + chr1_2:25342979-25342998 None:intergenic 30.0%
CTAAGTACAATGTATGTTTC+AGG - chr1_2:25342977-25342996 Msa0064310:intron 30.0%
AAGTACAATGTATGTTTCAG+GGG - chr1_2:25342979-25342998 Msa0064310:intron 30.0%
TGAACCTCAAATATACAACA+TGG - chr1_2:25343085-25343104 Msa0064310:intron 30.0%
CTTTCCATGTTGTATATTTG+AGG + chr1_2:25343092-25343111 None:intergenic 30.0%
CAAATATACAACATGGAAAG+AGG - chr1_2:25343092-25343111 Msa0064310:intron 30.0%
ACTATAATTCCATGAGCATA+TGG - chr1_2:25343138-25343157 Msa0064310:intron 30.0%
CTATAATTCCATGAGCATAT+GGG - chr1_2:25343139-25343158 Msa0064310:intron 30.0%
TGGGATTTCAATGACAAATA+TGG - chr1_2:25343158-25343177 Msa0064310:intron 30.0%
! TCTTGATAGTAAAATCCCAA+AGG + chr1_2:25343187-25343206 None:intergenic 30.0%
!!! GATTTTGAAGTGAGTTTGGA+TGG + chr1_2:25341420-25341439 None:intergenic 35.0%
!!! GAAGGATTTTGAAGTGAGTT+TGG + chr1_2:25341424-25341443 None:intergenic 35.0%
AATATGCCATGAAAGTTGAG+TGG + chr1_2:25341459-25341478 None:intergenic 35.0%
GGTCATCATACTTTCAATGA+AGG - chr1_2:25341726-25341745 Msa0064310:CDS 35.0%
TAATGGAAATTGGAGCATGT+TGG - chr1_2:25341833-25341852 Msa0064310:intron 35.0%
ACGAGATATTAAGAGAGTGA+TGG - chr1_2:25342027-25342046 Msa0064310:intron 35.0%
AAACAGATACAGACTTAGTC+AGG + chr1_2:25342322-25342341 None:intergenic 35.0%
CATCCATCATGAACTTTGTT+AGG + chr1_2:25342346-25342365 None:intergenic 35.0%
!!! AACATTTTGGGGTGCAATTA+TGG - chr1_2:25342377-25342396 Msa0064310:intron 35.0%
ATGGATGATGTAATAGCAGT+AGG - chr1_2:25342396-25342415 Msa0064310:intron 35.0%
AACATACCTTGAAATCCAGT+GGG + chr1_2:25342426-25342445 None:intergenic 35.0%
AAACATACCTTGAAATCCAG+TGG + chr1_2:25342427-25342446 None:intergenic 35.0%
! ACCACAATTTGGAGGTTTTA+CGG + chr1_2:25342524-25342543 None:intergenic 35.0%
TATCGCTGATATTGTGATCA+AGG + chr1_2:25342642-25342661 None:intergenic 35.0%
ACAGTCAAAATTGTGGTCAA+GGG + chr1_2:25342761-25342780 None:intergenic 35.0%
TACAGTCAAAATTGTGGTCA+AGG + chr1_2:25342762-25342781 None:intergenic 35.0%
AGTACAATGTATGTTTCAGG+GGG - chr1_2:25342980-25342999 Msa0064310:intron 35.0%
AGTATTTGTTCATTGGAGCA+GGG - chr1_2:25343003-25343022 Msa0064310:intron 35.0%
! ATTTGAGGTTCAAAGTGATG+AGG + chr1_2:25343077-25343096 None:intergenic 35.0%
ATTGAAATCCCATATGCTCA+TGG + chr1_2:25343150-25343169 None:intergenic 35.0%
ATGACAAATATGGAGACCTT+TGG - chr1_2:25343168-25343187 Msa0064310:intron 35.0%
TGACAAATATGGAGACCTTT+GGG - chr1_2:25343169-25343188 Msa0064310:intron 35.0%
GTATGTGTTAGGATTCTTTC+AGG - chr1_2:25343432-25343451 Msa0064310:five_prime_UTR 35.0%
!!! GATTTTGAAGTGAGTTTGGA+TGG + chr1_2:25341420-25341439 None:intergenic 35.0%
!!! GAAGGATTTTGAAGTGAGTT+TGG + chr1_2:25341424-25341443 None:intergenic 35.0%
AATATGCCATGAAAGTTGAG+TGG + chr1_2:25341459-25341478 None:intergenic 35.0%
GGTCATCATACTTTCAATGA+AGG - chr1_2:25341726-25341745 Msa0064310:CDS 35.0%
TAATGGAAATTGGAGCATGT+TGG - chr1_2:25341833-25341852 Msa0064310:intron 35.0%
ACGAGATATTAAGAGAGTGA+TGG - chr1_2:25342027-25342046 Msa0064310:intron 35.0%
AAACAGATACAGACTTAGTC+AGG + chr1_2:25342322-25342341 None:intergenic 35.0%
CATCCATCATGAACTTTGTT+AGG + chr1_2:25342346-25342365 None:intergenic 35.0%
!!! AACATTTTGGGGTGCAATTA+TGG - chr1_2:25342377-25342396 Msa0064310:intron 35.0%
ATGGATGATGTAATAGCAGT+AGG - chr1_2:25342396-25342415 Msa0064310:intron 35.0%
AACATACCTTGAAATCCAGT+GGG + chr1_2:25342426-25342445 None:intergenic 35.0%
AAACATACCTTGAAATCCAG+TGG + chr1_2:25342427-25342446 None:intergenic 35.0%
! ACCACAATTTGGAGGTTTTA+CGG + chr1_2:25342524-25342543 None:intergenic 35.0%
TATCGCTGATATTGTGATCA+AGG + chr1_2:25342642-25342661 None:intergenic 35.0%
ACAGTCAAAATTGTGGTCAA+GGG + chr1_2:25342761-25342780 None:intergenic 35.0%
TACAGTCAAAATTGTGGTCA+AGG + chr1_2:25342762-25342781 None:intergenic 35.0%
AGTACAATGTATGTTTCAGG+GGG - chr1_2:25342980-25342999 Msa0064310:intron 35.0%
AGTATTTGTTCATTGGAGCA+GGG - chr1_2:25343003-25343022 Msa0064310:intron 35.0%
! ATTTGAGGTTCAAAGTGATG+AGG + chr1_2:25343077-25343096 None:intergenic 35.0%
ATTGAAATCCCATATGCTCA+TGG + chr1_2:25343150-25343169 None:intergenic 35.0%
ATGACAAATATGGAGACCTT+TGG - chr1_2:25343168-25343187 Msa0064310:intron 35.0%
TGACAAATATGGAGACCTTT+GGG - chr1_2:25343169-25343188 Msa0064310:intron 35.0%
AGTTTGGATGGAGTGATGAT+AGG + chr1_2:25341408-25341427 None:intergenic 40.0%
ACAGGATCTTCATTAAGGTC+AGG + chr1_2:25341546-25341565 None:intergenic 40.0%
GGTCAACAGGATCTTCATTA+AGG + chr1_2:25341551-25341570 None:intergenic 40.0%
TTAGTGCGAAATTGGTCAAC+AGG + chr1_2:25341564-25341583 None:intergenic 40.0%
GTTGACCAATTTCGCACTAA+TGG - chr1_2:25341564-25341583 Msa0064310:CDS 40.0%
GAATGCCATTAGTGCGAAAT+TGG + chr1_2:25341572-25341591 None:intergenic 40.0%
GCAATGGCAAGAGTTTGAAA+TGG + chr1_2:25341978-25341997 None:intergenic 40.0%
ATCTCGTTTGTTTGTCCATG+AGG + chr1_2:25342014-25342033 None:intergenic 40.0%
AGAAAAATGCACCTACCAAC+AGG - chr1_2:25342175-25342194 Msa0064310:intron 40.0%
GAAAAATGCACCTACCAACA+GGG - chr1_2:25342176-25342195 Msa0064310:intron 40.0%
TCATAGATTCCCTCCTTTGT+AGG + chr1_2:25342279-25342298 None:intergenic 40.0%
TACAAAGGAGGGAATCTATG+AGG - chr1_2:25342278-25342297 Msa0064310:intron 40.0%
TACAGACTTAGTCAGGAATC+AGG + chr1_2:25342315-25342334 None:intergenic 40.0%
ACATACCTTGAAATCCAGTG+GGG + chr1_2:25342425-25342444 None:intergenic 40.0%
! CCACAATTTGGAGGTTTTAC+GGG + chr1_2:25342523-25342542 None:intergenic 40.0%
CTAACTGAACCACAATTTGG+AGG + chr1_2:25342532-25342551 None:intergenic 40.0%
GAGCTAACTGAACCACAATT+TGG + chr1_2:25342535-25342554 None:intergenic 40.0%
TGTGGTTCAGTTAGCTCAAA+CGG - chr1_2:25342538-25342557 Msa0064310:intron 40.0%
GAGTATTTGTTCATTGGAGC+AGG - chr1_2:25343002-25343021 Msa0064310:intron 40.0%
! TCAAAGTGATGAGGTTGATC+AGG + chr1_2:25343068-25343087 None:intergenic 40.0%
AGTTTGGATGGAGTGATGAT+AGG + chr1_2:25341408-25341427 None:intergenic 40.0%
ACAGGATCTTCATTAAGGTC+AGG + chr1_2:25341546-25341565 None:intergenic 40.0%
GGTCAACAGGATCTTCATTA+AGG + chr1_2:25341551-25341570 None:intergenic 40.0%
TTAGTGCGAAATTGGTCAAC+AGG + chr1_2:25341564-25341583 None:intergenic 40.0%
GTTGACCAATTTCGCACTAA+TGG - chr1_2:25341564-25341583 Msa0064310:CDS 40.0%
GAATGCCATTAGTGCGAAAT+TGG + chr1_2:25341572-25341591 None:intergenic 40.0%
GCAATGGCAAGAGTTTGAAA+TGG + chr1_2:25341978-25341997 None:intergenic 40.0%
ATCTCGTTTGTTTGTCCATG+AGG + chr1_2:25342014-25342033 None:intergenic 40.0%
AGAAAAATGCACCTACCAAC+AGG - chr1_2:25342175-25342194 Msa0064310:intron 40.0%
GAAAAATGCACCTACCAACA+GGG - chr1_2:25342176-25342195 Msa0064310:intron 40.0%
TCATAGATTCCCTCCTTTGT+AGG + chr1_2:25342279-25342298 None:intergenic 40.0%
TACAAAGGAGGGAATCTATG+AGG - chr1_2:25342278-25342297 Msa0064310:intron 40.0%
TACAGACTTAGTCAGGAATC+AGG + chr1_2:25342315-25342334 None:intergenic 40.0%
ACATACCTTGAAATCCAGTG+GGG + chr1_2:25342425-25342444 None:intergenic 40.0%
! CCACAATTTGGAGGTTTTAC+GGG + chr1_2:25342523-25342542 None:intergenic 40.0%
CTAACTGAACCACAATTTGG+AGG + chr1_2:25342532-25342551 None:intergenic 40.0%
GAGCTAACTGAACCACAATT+TGG + chr1_2:25342535-25342554 None:intergenic 40.0%
TGTGGTTCAGTTAGCTCAAA+CGG - chr1_2:25342538-25342557 Msa0064310:intron 40.0%
GAGTATTTGTTCATTGGAGC+AGG - chr1_2:25343002-25343021 Msa0064310:intron 40.0%
! TCAAAGTGATGAGGTTGATC+AGG + chr1_2:25343068-25343087 None:intergenic 40.0%
! ATGTGTCAGACTTGGTTGGT+TGG + chr1_2:25341354-25341373 None:intergenic 45.0%
AACCAACCAAGTCTGACACA+TGG - chr1_2:25341353-25341372 Msa0064310:three_prime_UTR 45.0%
TGGATGGAGTGATGATAGGA+GGG + chr1_2:25341404-25341423 None:intergenic 45.0%
TTGGATGGAGTGATGATAGG+AGG + chr1_2:25341405-25341424 None:intergenic 45.0%
CCATGAAAGTTGAGTGGTGT+TGG + chr1_2:25341453-25341472 None:intergenic 45.0%
CCAACACCACTCAACTTTCA+TGG - chr1_2:25341450-25341469 Msa0064310:three_prime_UTR 45.0%
TTGGAGCATGTTGGTACTCA+TGG - chr1_2:25341842-25341861 Msa0064310:intron 45.0%
AGGTGTGACAACAATGGCAA+TGG + chr1_2:25341994-25342013 None:intergenic 45.0%
TCCATGAGGTGTGACAACAA+TGG + chr1_2:25342000-25342019 None:intergenic 45.0%
TTCGATTCAACCCTGTTGGT+AGG + chr1_2:25342189-25342208 None:intergenic 45.0%
TTCGTTCGATTCAACCCTGT+TGG + chr1_2:25342193-25342212 None:intergenic 45.0%
ACAGGGTTGAATCGAACGAA+AGG - chr1_2:25342193-25342212 Msa0064310:intron 45.0%
CAGGGTTGAATCGAACGAAA+GGG - chr1_2:25342194-25342213 Msa0064310:intron 45.0%
AGGGTTGAATCGAACGAAAG+GGG - chr1_2:25342195-25342214 Msa0064310:intron 45.0%
ATACCTTGAAATCCAGTGGG+GGG + chr1_2:25342423-25342442 None:intergenic 45.0%
CATACCTTGAAATCCAGTGG+GGG + chr1_2:25342424-25342443 None:intergenic 45.0%
CCCGTAAAACCTCCAAATTG+TGG - chr1_2:25342520-25342539 Msa0064310:intron 45.0%
TCGTGGTTGTGTTGCAATTG+CGG - chr1_2:25342590-25342609 Msa0064310:intron 45.0%
TCAAAATTGTGGTCAAGGGC+CGG + chr1_2:25342757-25342776 None:intergenic 45.0%
CTCATGCAGGGCTTATTTCA+TGG - chr1_2:25342820-25342839 Msa0064310:intron 45.0%
! TGGGGTATTCTTCGATGTTC+CGG - chr1_2:25342866-25342885 Msa0064310:intron 45.0%
!! CAGGGGGAGTATTTGTTCAT+TGG - chr1_2:25342996-25343015 Msa0064310:intron 45.0%
! ATGTGTCAGACTTGGTTGGT+TGG + chr1_2:25341354-25341373 None:intergenic 45.0%
AACCAACCAAGTCTGACACA+TGG - chr1_2:25341353-25341372 Msa0064310:three_prime_UTR 45.0%
TGGATGGAGTGATGATAGGA+GGG + chr1_2:25341404-25341423 None:intergenic 45.0%
TTGGATGGAGTGATGATAGG+AGG + chr1_2:25341405-25341424 None:intergenic 45.0%
CCATGAAAGTTGAGTGGTGT+TGG + chr1_2:25341453-25341472 None:intergenic 45.0%
CCAACACCACTCAACTTTCA+TGG - chr1_2:25341450-25341469 Msa0064310:three_prime_UTR 45.0%
TTGGAGCATGTTGGTACTCA+TGG - chr1_2:25341842-25341861 Msa0064310:intron 45.0%
AGGTGTGACAACAATGGCAA+TGG + chr1_2:25341994-25342013 None:intergenic 45.0%
TCCATGAGGTGTGACAACAA+TGG + chr1_2:25342000-25342019 None:intergenic 45.0%
TTCGATTCAACCCTGTTGGT+AGG + chr1_2:25342189-25342208 None:intergenic 45.0%
TTCGTTCGATTCAACCCTGT+TGG + chr1_2:25342193-25342212 None:intergenic 45.0%
ACAGGGTTGAATCGAACGAA+AGG - chr1_2:25342193-25342212 Msa0064310:intron 45.0%
CAGGGTTGAATCGAACGAAA+GGG - chr1_2:25342194-25342213 Msa0064310:intron 45.0%
AGGGTTGAATCGAACGAAAG+GGG - chr1_2:25342195-25342214 Msa0064310:intron 45.0%
ATACCTTGAAATCCAGTGGG+GGG + chr1_2:25342423-25342442 None:intergenic 45.0%
CATACCTTGAAATCCAGTGG+GGG + chr1_2:25342424-25342443 None:intergenic 45.0%
CCCGTAAAACCTCCAAATTG+TGG - chr1_2:25342520-25342539 Msa0064310:intron 45.0%
TCGTGGTTGTGTTGCAATTG+CGG - chr1_2:25342590-25342609 Msa0064310:intron 45.0%
TCAAAATTGTGGTCAAGGGC+CGG + chr1_2:25342757-25342776 None:intergenic 45.0%
CTCATGCAGGGCTTATTTCA+TGG - chr1_2:25342820-25342839 Msa0064310:intron 45.0%
! TGGGGTATTCTTCGATGTTC+CGG - chr1_2:25342866-25342885 Msa0064310:intron 45.0%
!! CAGGGGGAGTATTTGTTCAT+TGG - chr1_2:25342996-25343015 Msa0064310:intron 45.0%
!! AAATTAAAATATAAATAAAG+GGG + chr1_2:25342066-25342085 None:intergenic 5.0%
!! AAATTAAAATATAAATAAAG+GGG + chr1_2:25342066-25342085 None:intergenic 5.0%
ATAGCGCCATGTGTCAGACT+TGG + chr1_2:25341362-25341381 None:intergenic 50.0%
! GAGTGGTGTTGGAGATGAGA+AGG + chr1_2:25341442-25341461 None:intergenic 50.0%
GCCATTGTTGTCACACCTCA+TGG - chr1_2:25341996-25342015 Msa0064310:intron 50.0%
GGTCGATACTGCCTCAATCT+CGG + chr1_2:25342699-25342718 None:intergenic 50.0%
! TGAAAGCTTGCCACTTGAGC+CGG - chr1_2:25342735-25342754 Msa0064310:intron 50.0%
GAAGAATACCCCAGCAGCAA+TGG + chr1_2:25342859-25342878 None:intergenic 50.0%
ATAGCGCCATGTGTCAGACT+TGG + chr1_2:25341362-25341381 None:intergenic 50.0%
! GAGTGGTGTTGGAGATGAGA+AGG + chr1_2:25341442-25341461 None:intergenic 50.0%
GCCATTGTTGTCACACCTCA+TGG - chr1_2:25341996-25342015 Msa0064310:intron 50.0%
GGTCGATACTGCCTCAATCT+CGG + chr1_2:25342699-25342718 None:intergenic 50.0%
! TGAAAGCTTGCCACTTGAGC+CGG - chr1_2:25342735-25342754 Msa0064310:intron 50.0%
GAAGAATACCCCAGCAGCAA+TGG + chr1_2:25342859-25342878 None:intergenic 50.0%
! CGCCATGTGTCAGACTTGGT+TGG + chr1_2:25341358-25341377 None:intergenic 55.0%
AGGAGGGACAAGTGAGAGTG+AGG + chr1_2:25341388-25341407 None:intergenic 55.0%
TCTCGGTTGCAGTGCAGTTG+TGG + chr1_2:25342682-25342701 None:intergenic 55.0%
CTGCACTGCAACCGAGATTG+AGG - chr1_2:25342685-25342704 Msa0064310:intron 55.0%
AATACCCCAGCAGCAATGGC+TGG + chr1_2:25342855-25342874 None:intergenic 55.0%
! CGCCATGTGTCAGACTTGGT+TGG + chr1_2:25341358-25341377 None:intergenic 55.0%
AGGAGGGACAAGTGAGAGTG+AGG + chr1_2:25341388-25341407 None:intergenic 55.0%
TCTCGGTTGCAGTGCAGTTG+TGG + chr1_2:25342682-25342701 None:intergenic 55.0%
CTGCACTGCAACCGAGATTG+AGG - chr1_2:25342685-25342704 Msa0064310:intron 55.0%
AATACCCCAGCAGCAATGGC+TGG + chr1_2:25342855-25342874 None:intergenic 55.0%
ATAGCAGTAGGACCCCCCAC+TGG - chr1_2:25342408-25342427 Msa0064310:intron 60.0%
GGACCCCCCACTGGATTTCA+AGG - chr1_2:25342417-25342436 Msa0064310:intron 60.0%
TTCCCACCAGCCATTGCTGC+TGG - chr1_2:25342846-25342865 Msa0064310:intron 60.0%
TCCCACCAGCCATTGCTGCT+GGG - chr1_2:25342847-25342866 Msa0064310:intron 60.0%
ATAGCAGTAGGACCCCCCAC+TGG - chr1_2:25342408-25342427 Msa0064310:intron 60.0%
GGACCCCCCACTGGATTTCA+AGG - chr1_2:25342417-25342436 Msa0064310:intron 60.0%
TTCCCACCAGCCATTGCTGC+TGG - chr1_2:25342846-25342865 Msa0064310:intron 60.0%
TCCCACCAGCCATTGCTGCT+GGG - chr1_2:25342847-25342866 Msa0064310:intron 60.0%
! TGGTCAAGGGCCGGCTCAAG+TGG + chr1_2:25342748-25342767 None:intergenic 65.0%
CCCCAGCAGCAATGGCTGGT+GGG + chr1_2:25342851-25342870 None:intergenic 65.0%
CCCACCAGCCATTGCTGCTG+GGG - chr1_2:25342848-25342867 Msa0064310:intron 65.0%
ACCCCAGCAGCAATGGCTGG+TGG + chr1_2:25342852-25342871 None:intergenic 65.0%
! TGGTCAAGGGCCGGCTCAAG+TGG + chr1_2:25342748-25342767 None:intergenic 65.0%
CCCCAGCAGCAATGGCTGGT+GGG + chr1_2:25342851-25342870 None:intergenic 65.0%
CCCACCAGCCATTGCTGCTG+GGG - chr1_2:25342848-25342867 Msa0064310:intron 65.0%
ACCCCAGCAGCAATGGCTGG+TGG + chr1_2:25342852-25342871 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 25341316 25343452 25341316 ID=Msa0064310;Name=Msa0064310
chr1_2 mRNA 25341316 25343452 25341316 ID=Msa0064310-mRNA-1;Parent=Msa0064310;Name=Msa0064310-mRNA-1;_AED=0.14;_eAED=0.14;_QI=56|1|1|1|1|1|5|217|215
chr1_2 exon 25341316 25341769 25341316 ID=Msa0064310-mRNA-1:exon:9077;Parent=Msa0064310-mRNA-1
chr1_2 exon 25341881 25341939 25341881 ID=Msa0064310-mRNA-1:exon:9076;Parent=Msa0064310-mRNA-1
chr1_2 exon 25342330 25342392 25342330 ID=Msa0064310-mRNA-1:exon:9075;Parent=Msa0064310-mRNA-1
chr1_2 exon 25343006 25343069 25343006 ID=Msa0064310-mRNA-1:exon:9074;Parent=Msa0064310-mRNA-1
chr1_2 exon 25343172 25343452 25343172 ID=Msa0064310-mRNA-1:exon:9073;Parent=Msa0064310-mRNA-1
chr1_2 five_prime_UTR 25343397 25343452 25343397 ID=Msa0064310-mRNA-1:five_prime_utr;Parent=Msa0064310-mRNA-1
chr1_2 CDS 25343172 25343396 25343172 ID=Msa0064310-mRNA-1:cds;Parent=Msa0064310-mRNA-1
chr1_2 CDS 25343006 25343069 25343006 ID=Msa0064310-mRNA-1:cds;Parent=Msa0064310-mRNA-1
chr1_2 CDS 25342330 25342392 25342330 ID=Msa0064310-mRNA-1:cds;Parent=Msa0064310-mRNA-1
chr1_2 CDS 25341881 25341939 25341881 ID=Msa0064310-mRNA-1:cds;Parent=Msa0064310-mRNA-1
chr1_2 CDS 25341533 25341769 25341533 ID=Msa0064310-mRNA-1:cds;Parent=Msa0064310-mRNA-1
chr1_2 three_prime_UTR 25341316 25341532 25341316 ID=Msa0064310-mRNA-1:three_prime_utr;Parent=Msa0064310-mRNA-1
Gene Sequence

>Msa0064310

ATGGCGCTATGTTCCTCACTCTCACTTGTCCCTCCTATCATCACTCCATCCAAACTCACTTCAAAATCCTTCTCATCTCCAACACCACTCAACTTTCATGGCATATTCACTACCAAGAGTAACAATAACTCAACAAAATTCTTGTTGAATGCTGGTTTCAATCTTATTGAGCCTGACCTTAATGAAGATCCTGTTGACCAATTTCGCACTAATGGCATTCCACCTGAAGAATTTGAGTATGGAATATTTGATGGTCATCATACTTTCAATGAAGGAGAAGAAAAGAAAGGAACATTTTGGGGTGCAATTATGGATGATGTAATAGCAGTAGGACCCCCCACTGGATTTCAAGGGCTTATTTCATGGCTCTTCCCACCAGCCATTGCTGCTGGGGTATTCTTCGATGTTCCGGGGGAGTATTTGTTCATTGGAGCAGGGATATTTACAATTGTATTTTGCATTATTGAGATGGATAAACCTGATCAACCTCATCACTTTGAACCTCAAATATACAACATGGAAAGAGGAGCTAGAGACAAGTTGATAAATGACTATAATTCCATGAGCATATGGGATTTCAATGACAAATATGGAGACCTTTGGGATTTTACTATCAAGAAGAATAAGGATGACATAATGAAGAGATAA

Protein sequence

>Msa0064310

MALCSSLSLVPPIITPSKLTSKSFSSPTPLNFHGIFTTKSNNNSTKFLLNAGFNLIEPDLNEDPVDQFRTNGIPPEEFEYGIFDGHHTFNEGEEKKGTFWGAIMDDVIAVGPPTGFQGLISWLFPPAIAAGVFFDVPGEYLFIGAGIFTIVFCIIEMDKPDQPHHFEPQIYNMERGARDKLINDYNSMSIWDFNDKYGDLWDFTIKKNKDDIMKR*