AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0164580


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 42 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGAATCTCAGGCTCATTT+AGG 0.248243 1_4:-44079238 Msa0164580:five_prime_UTR
ATTCATCCTTATATATCTTT+TGG 0.282822 1_4:+44078080 None:intergenic
ACCACCAGTCCTTTGGCATT+TGG 0.308230 1_4:+44079151 None:intergenic
ACTGGTTTGAATGAACTAAA+AGG 0.339247 1_4:-44077879 Msa0164580:three_prime_UTR
TATCTGCAAGTGCCTTGATT+TGG 0.379408 1_4:+44078113 None:intergenic
AGTACACCAAAAGATATATA+AGG 0.383201 1_4:-44078086 Msa0164580:three_prime_UTR
GGGAAATACCACCTTGCTAT+TGG 0.388797 1_4:+44079208 None:intergenic
AAGCCACTCAACGAAATTGC+TGG 0.419908 1_4:-44078238 Msa0164580:three_prime_UTR
GATCCACACCACCAGTCCTT+TGG 0.451001 1_4:+44079144 None:intergenic
TCATTGCTGAATGTGGAAAT+TGG 0.454528 1_4:-44078515 Msa0164580:intron
TCAGCAATGACCCTCACATT+AGG 0.462929 1_4:+44078528 None:intergenic
TGCTGGGCTGACCACTAGTC+AGG 0.471357 1_4:-44078221 Msa0164580:three_prime_UTR
AAGCTTGAACTTCCAAATCA+AGG 0.472560 1_4:-44078125 Msa0164580:three_prime_UTR
ACCAGTCCTTTGGCATTTGG+TGG 0.474336 1_4:+44079154 None:intergenic
TCCAATCTGTAATCAACCTC+TGG 0.475049 1_4:+44079184 None:intergenic
AAGATGAAAATATTCCTACT+TGG 0.493351 1_4:+44078153 None:intergenic
ACCAGAGGTTGATTACAGAT+TGG 0.496749 1_4:-44079185 Msa0164580:five_prime_UTR
AGCCCAGCAATTTCGTTGAG+TGG 0.512976 1_4:+44078235 None:intergenic
TGTTCCTTAGGTTCTCTCCA+AGG 0.526918 1_4:-44078589 Msa0164580:intron
AAGGAATTGTAGTTCAGCCT+TGG 0.529522 1_4:+44078572 None:intergenic
TTGCTCTGCTGCCAACACTA+AGG 0.531993 1_4:-44078551 Msa0164580:exon
AGCCACTCAACGAAATTGCT+GGG 0.537916 1_4:-44078237 Msa0164580:three_prime_UTR
GTACATATCACTCATGGTTG+TGG 0.558222 1_4:+44078030 None:intergenic
GAGTGATATGTACATTCTCA+AGG 0.567704 1_4:-44078020 Msa0164580:three_prime_UTR
AATCTGTAATCAACCTCTGG+TGG 0.569201 1_4:+44079187 None:intergenic
ACCACCAAATGCCAAAGGAC+TGG 0.587702 1_4:-44079155 Msa0164580:exon
GAGAATGTACATATCACTCA+TGG 0.594264 1_4:+44078024 None:intergenic
AACACTAAGGCCTAATGTGA+GGG 0.598775 1_4:-44078538 Msa0164580:exon
GTGAGGGTCATTGCTGAATG+TGG 0.601568 1_4:-44078522 Msa0164580:three_prime_UTR
CTCACATTAGGCCTTAGTGT+TGG 0.607755 1_4:+44078540 None:intergenic
CTATCAAGCGTCCTGACTAG+TGG 0.611389 1_4:+44078210 None:intergenic
TTAGTGTTGGCAGCAGAGCA+AGG 0.611894 1_4:+44078553 None:intergenic
ATGCCAAAGGACTGGTGGTG+TGG 0.615122 1_4:-44079147 Msa0164580:CDS
CAACACTAAGGCCTAATGTG+AGG 0.616666 1_4:-44078539 Msa0164580:exon
ATCTGTAATCAACCTCTGGT+GGG 0.628296 1_4:+44079188 None:intergenic
TAGGAAAGCAACCAATAGCA+AGG 0.634862 1_4:-44079219 Msa0164580:five_prime_UTR
GGTGTGGATCATTGAAGCCA+AGG 0.636653 1_4:-44079131 Msa0164580:intron
GCATTACCACCAAATGCCAA+AGG 0.660442 1_4:-44079160 Msa0164580:exon
AAGGTGGTATTTCCCACCAG+AGG 0.661184 1_4:-44079200 Msa0164580:five_prime_UTR
ACCAAATGCCAAAGGACTGG+TGG 0.665822 1_4:-44079152 Msa0164580:exon
TGATCAGGAGAAAGTTTACG+TGG 0.681866 1_4:-44078261 Msa0164580:intron
GAAAGCAACCAATAGCAAGG+TGG 0.723318 1_4:-44079216 Msa0164580:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGTTTTTATGAAAATAAA+AGG - chr1_4:44078217-44078236 Msa0164580:three_prime_UTR 10.0%
!!! TTGTTTTTATGAAAATAAAA+GGG - chr1_4:44078218-44078237 Msa0164580:three_prime_UTR 10.0%
!! AAAAACATTATTAGAAAATT+TGG + chr1_4:44078637-44078656 None:intergenic 10.0%
!!! TTTGTTTTTATGAAAATAAA+AGG - chr1_4:44078217-44078236 Msa0164580:three_prime_UTR 10.0%
!!! TTGTTTTTATGAAAATAAAA+GGG - chr1_4:44078218-44078237 Msa0164580:three_prime_UTR 10.0%
!! AAAAACATTATTAGAAAATT+TGG + chr1_4:44078637-44078656 None:intergenic 10.0%
!! ATTATTTGTATTATATCTCT+AGG - chr1_4:44078154-44078173 Msa0164580:three_prime_UTR 15.0%
!! TGAATATATATTCATTTATC+TGG - chr1_4:44078475-44078494 Msa0164580:intron 15.0%
!! ATTATTTGTATTATATCTCT+AGG - chr1_4:44078154-44078173 Msa0164580:three_prime_UTR 15.0%
!! TGAATATATATTCATTTATC+TGG - chr1_4:44078475-44078494 Msa0164580:intron 15.0%
!! AAACAATTTCATCAGAAAAT+AGG + chr1_4:44078196-44078215 None:intergenic 20.0%
!!! TTTTTATGAAAATAAAAGGG+AGG - chr1_4:44078221-44078240 Msa0164580:three_prime_UTR 20.0%
!! TCATGGAAAGTTATAAATAA+AGG - chr1_4:44078298-44078317 Msa0164580:intron 20.0%
!!! ATTCATCCTTATATATCTTT+TGG + chr1_4:44079042-44079061 None:intergenic 20.0%
!! AAACAATTTCATCAGAAAAT+AGG + chr1_4:44078196-44078215 None:intergenic 20.0%
!!! TTTTTATGAAAATAAAAGGG+AGG - chr1_4:44078221-44078240 Msa0164580:three_prime_UTR 20.0%
!! TCATGGAAAGTTATAAATAA+AGG - chr1_4:44078298-44078317 Msa0164580:intron 20.0%
!!! ATTCATCCTTATATATCTTT+TGG + chr1_4:44079042-44079061 None:intergenic 20.0%
!!! ATTCTGTTTTAAGTATGTGA+GGG + chr1_4:44078050-44078069 None:intergenic 25.0%
!!! AAATGCTTTTAGGAAAAGTA+TGG - chr1_4:44078128-44078147 Msa0164580:three_prime_UTR 25.0%
! AATTTCATCAGAAAATAGGT+GGG + chr1_4:44078192-44078211 None:intergenic 25.0%
! GAGATTCTAATATCATATCA+TGG - chr1_4:44078281-44078300 Msa0164580:intron 25.0%
! ATTGCAACAAATTACAAATG+AGG + chr1_4:44078353-44078372 None:intergenic 25.0%
! TATATTCACCTAACAACAAT+CGG + chr1_4:44078463-44078482 None:intergenic 25.0%
! AATTTCCAACTTTATATGCA+AGG - chr1_4:44078761-44078780 Msa0164580:intron 25.0%
! AAGATGAAAATATTCCTACT+TGG + chr1_4:44078969-44078988 None:intergenic 25.0%
! AGTACACCAAAAGATATATA+AGG - chr1_4:44079033-44079052 Msa0164580:intron 25.0%
! CTAGATGAGAAAAAAAAAAC+TGG - chr1_4:44079222-44079241 Msa0164580:five_prime_UTR 25.0%
!!! ATTCTGTTTTAAGTATGTGA+GGG + chr1_4:44078050-44078069 None:intergenic 25.0%
!!! AAATGCTTTTAGGAAAAGTA+TGG - chr1_4:44078128-44078147 Msa0164580:three_prime_UTR 25.0%
! AATTTCATCAGAAAATAGGT+GGG + chr1_4:44078192-44078211 None:intergenic 25.0%
! GAGATTCTAATATCATATCA+TGG - chr1_4:44078281-44078300 Msa0164580:intron 25.0%
! ATTGCAACAAATTACAAATG+AGG + chr1_4:44078353-44078372 None:intergenic 25.0%
! TATATTCACCTAACAACAAT+CGG + chr1_4:44078463-44078482 None:intergenic 25.0%
! AATTTCCAACTTTATATGCA+AGG - chr1_4:44078761-44078780 Msa0164580:intron 25.0%
! AAGATGAAAATATTCCTACT+TGG + chr1_4:44078969-44078988 None:intergenic 25.0%
! AGTACACCAAAAGATATATA+AGG - chr1_4:44079033-44079052 Msa0164580:intron 25.0%
! CTAGATGAGAAAAAAAAAAC+TGG - chr1_4:44079222-44079241 Msa0164580:five_prime_UTR 25.0%
! AGAATTTTGTCATGAATCTC+AGG - chr1_4:44077871-44077890 Msa0164580:three_prime_UTR 30.0%
!! TTCTGTTTTAAGTATGTGAG+GGG + chr1_4:44078049-44078068 None:intergenic 30.0%
!! CATTCTGTTTTAAGTATGTG+AGG + chr1_4:44078051-44078070 None:intergenic 30.0%
!! CTAAAAGCATTTGATTGAGA+TGG + chr1_4:44078120-44078139 None:intergenic 30.0%
! CATCTCAATCAAATGCTTTT+AGG - chr1_4:44078118-44078137 Msa0164580:three_prime_UTR 30.0%
CAATTTCATCAGAAAATAGG+TGG + chr1_4:44078193-44078212 None:intergenic 30.0%
TTTATATGCAAGGTCTAGTT+TGG - chr1_4:44078771-44078790 Msa0164580:intron 30.0%
AACATGAGAATGAGATTTCT+TGG + chr1_4:44078826-44078845 None:intergenic 30.0%
GTTTGTTTATGTGAATGATC+AGG - chr1_4:44078843-44078862 Msa0164580:intron 30.0%
!! TATTCCTACTTGGTTTTTGA+TGG + chr1_4:44078959-44078978 None:intergenic 30.0%
!! CTCAAGGTTTAATTTTGTCA+TGG - chr1_4:44079115-44079134 Msa0164580:intron 30.0%
!! ACTGGTTTGAATGAACTAAA+AGG - chr1_4:44079240-44079259 Msa0164580:five_prime_UTR 30.0%
! AGAATTTTGTCATGAATCTC+AGG - chr1_4:44077871-44077890 Msa0164580:three_prime_UTR 30.0%
!! TTCTGTTTTAAGTATGTGAG+GGG + chr1_4:44078049-44078068 None:intergenic 30.0%
!! CATTCTGTTTTAAGTATGTG+AGG + chr1_4:44078051-44078070 None:intergenic 30.0%
!! CTAAAAGCATTTGATTGAGA+TGG + chr1_4:44078120-44078139 None:intergenic 30.0%
! CATCTCAATCAAATGCTTTT+AGG - chr1_4:44078118-44078137 Msa0164580:three_prime_UTR 30.0%
CAATTTCATCAGAAAATAGG+TGG + chr1_4:44078193-44078212 None:intergenic 30.0%
TTTATATGCAAGGTCTAGTT+TGG - chr1_4:44078771-44078790 Msa0164580:intron 30.0%
AACATGAGAATGAGATTTCT+TGG + chr1_4:44078826-44078845 None:intergenic 30.0%
GTTTGTTTATGTGAATGATC+AGG - chr1_4:44078843-44078862 Msa0164580:intron 30.0%
!! TATTCCTACTTGGTTTTTGA+TGG + chr1_4:44078959-44078978 None:intergenic 30.0%
!! CTCAAGGTTTAATTTTGTCA+TGG - chr1_4:44079115-44079134 Msa0164580:intron 30.0%
!! ACTGGTTTGAATGAACTAAA+AGG - chr1_4:44079240-44079259 Msa0164580:five_prime_UTR 30.0%
CTAACAACAATCGGATTTCT+TGG + chr1_4:44078454-44078473 None:intergenic 35.0%
! CAAGAAATCCGATTGTTGTT+AGG - chr1_4:44078452-44078471 Msa0164580:intron 35.0%
TCATTGCTGAATGTGGAAAT+TGG - chr1_4:44078604-44078623 Msa0164580:intron 35.0%
CTAGACCTTGCATATAAAGT+TGG + chr1_4:44078769-44078788 None:intergenic 35.0%
ATGAGAATGAGATTTCTTGG+TGG + chr1_4:44078823-44078842 None:intergenic 35.0%
AAGCTTGAACTTCCAAATCA+AGG - chr1_4:44078994-44079013 Msa0164580:intron 35.0%
GAGAATGTACATATCACTCA+TGG + chr1_4:44079098-44079117 None:intergenic 35.0%
GAGTGATATGTACATTCTCA+AGG - chr1_4:44079099-44079118 Msa0164580:intron 35.0%
CTAACAACAATCGGATTTCT+TGG + chr1_4:44078454-44078473 None:intergenic 35.0%
! CAAGAAATCCGATTGTTGTT+AGG - chr1_4:44078452-44078471 Msa0164580:intron 35.0%
TCATTGCTGAATGTGGAAAT+TGG - chr1_4:44078604-44078623 Msa0164580:intron 35.0%
CTAGACCTTGCATATAAAGT+TGG + chr1_4:44078769-44078788 None:intergenic 35.0%
ATGAGAATGAGATTTCTTGG+TGG + chr1_4:44078823-44078842 None:intergenic 35.0%
AAGCTTGAACTTCCAAATCA+AGG - chr1_4:44078994-44079013 Msa0164580:intron 35.0%
GAGAATGTACATATCACTCA+TGG + chr1_4:44079098-44079117 None:intergenic 35.0%
GAGTGATATGTACATTCTCA+AGG - chr1_4:44079099-44079118 Msa0164580:intron 35.0%
CATGAATCTCAGGCTCATTT+AGG - chr1_4:44077881-44077900 Msa0164580:three_prime_UTR 40.0%
TAGGAAAGCAACCAATAGCA+AGG - chr1_4:44077900-44077919 Msa0164580:three_prime_UTR 40.0%
ATCTGTAATCAACCTCTGGT+GGG + chr1_4:44077934-44077953 None:intergenic 40.0%
AATCTGTAATCAACCTCTGG+TGG + chr1_4:44077935-44077954 None:intergenic 40.0%
! ACCAGAGGTTGATTACAGAT+TGG - chr1_4:44077934-44077953 Msa0164580:three_prime_UTR 40.0%
TCCAATCTGTAATCAACCTC+TGG + chr1_4:44077938-44077957 None:intergenic 40.0%
GTAAAGCATAATCCACACCT+TGG + chr1_4:44078008-44078027 None:intergenic 40.0%
! GAAAATAAAAGGGAGGTGCA+AGG - chr1_4:44078228-44078247 Msa0164580:three_prime_UTR 40.0%
TTGCAGTTAAGCTGTGATAC+TGG + chr1_4:44078390-44078409 None:intergenic 40.0%
ACAACAATCGGATTTCTTGG+TGG + chr1_4:44078451-44078470 None:intergenic 40.0%
CATTTATCTGGTCAAATGCG+CGG - chr1_4:44078487-44078506 Msa0164580:intron 40.0%
! GCGGTACTAAAATGTTGCTT+TGG - chr1_4:44078506-44078525 Msa0164580:intron 40.0%
AAGGAATTGTAGTTCAGCCT+TGG + chr1_4:44078550-44078569 None:intergenic 40.0%
AACACTAAGGCCTAATGTGA+GGG - chr1_4:44078581-44078600 Msa0164580:CDS 40.0%
TGCTGAATGTGGAAATTGGT+AGG - chr1_4:44078608-44078627 Msa0164580:intron 40.0%
TGTTGCAAAACTTGTGCTTG+AGG - chr1_4:44078717-44078736 Msa0164580:intron 40.0%
TGATCAGGAGAAAGTTTACG+TGG - chr1_4:44078858-44078877 Msa0164580:intron 40.0%
!! CCTACTTGGTTTTTGATGGA+TGG + chr1_4:44078955-44078974 None:intergenic 40.0%
CCATCCATCAAAAACCAAGT+AGG - chr1_4:44078952-44078971 Msa0164580:intron 40.0%
TATCTGCAAGTGCCTTGATT+TGG + chr1_4:44079009-44079028 None:intergenic 40.0%
GTACATATCACTCATGGTTG+TGG + chr1_4:44079092-44079111 None:intergenic 40.0%
CATGAATCTCAGGCTCATTT+AGG - chr1_4:44077881-44077900 Msa0164580:three_prime_UTR 40.0%
TAGGAAAGCAACCAATAGCA+AGG - chr1_4:44077900-44077919 Msa0164580:three_prime_UTR 40.0%
ATCTGTAATCAACCTCTGGT+GGG + chr1_4:44077934-44077953 None:intergenic 40.0%
AATCTGTAATCAACCTCTGG+TGG + chr1_4:44077935-44077954 None:intergenic 40.0%
! ACCAGAGGTTGATTACAGAT+TGG - chr1_4:44077934-44077953 Msa0164580:three_prime_UTR 40.0%
TCCAATCTGTAATCAACCTC+TGG + chr1_4:44077938-44077957 None:intergenic 40.0%
GTAAAGCATAATCCACACCT+TGG + chr1_4:44078008-44078027 None:intergenic 40.0%
! GAAAATAAAAGGGAGGTGCA+AGG - chr1_4:44078228-44078247 Msa0164580:three_prime_UTR 40.0%
TTGCAGTTAAGCTGTGATAC+TGG + chr1_4:44078390-44078409 None:intergenic 40.0%
ACAACAATCGGATTTCTTGG+TGG + chr1_4:44078451-44078470 None:intergenic 40.0%
CATTTATCTGGTCAAATGCG+CGG - chr1_4:44078487-44078506 Msa0164580:intron 40.0%
! GCGGTACTAAAATGTTGCTT+TGG - chr1_4:44078506-44078525 Msa0164580:intron 40.0%
AAGGAATTGTAGTTCAGCCT+TGG + chr1_4:44078550-44078569 None:intergenic 40.0%
AACACTAAGGCCTAATGTGA+GGG - chr1_4:44078581-44078600 Msa0164580:CDS 40.0%
TGCTGAATGTGGAAATTGGT+AGG - chr1_4:44078608-44078627 Msa0164580:intron 40.0%
TGTTGCAAAACTTGTGCTTG+AGG - chr1_4:44078717-44078736 Msa0164580:intron 40.0%
TGATCAGGAGAAAGTTTACG+TGG - chr1_4:44078858-44078877 Msa0164580:intron 40.0%
!! CCTACTTGGTTTTTGATGGA+TGG + chr1_4:44078955-44078974 None:intergenic 40.0%
CCATCCATCAAAAACCAAGT+AGG - chr1_4:44078952-44078971 Msa0164580:intron 40.0%
TATCTGCAAGTGCCTTGATT+TGG + chr1_4:44079009-44079028 None:intergenic 40.0%
GTACATATCACTCATGGTTG+TGG + chr1_4:44079092-44079111 None:intergenic 40.0%
GAAAGCAACCAATAGCAAGG+TGG - chr1_4:44077903-44077922 Msa0164580:three_prime_UTR 45.0%
! GGGAAATACCACCTTGCTAT+TGG + chr1_4:44077914-44077933 None:intergenic 45.0%
GCATTACCACCAAATGCCAA+AGG - chr1_4:44077959-44077978 Msa0164580:three_prime_UTR 45.0%
! GATTTCTTGGTGGTTTCGTC+AGG + chr1_4:44078441-44078460 None:intergenic 45.0%
!! TGTTGCTTTGGCTGTTCCTT+AGG - chr1_4:44078518-44078537 Msa0164580:three_prime_UTR 45.0%
TGTTCCTTAGGTTCTCTCCA+AGG - chr1_4:44078530-44078549 Msa0164580:three_prime_UTR 45.0%
CTCACATTAGGCCTTAGTGT+TGG + chr1_4:44078582-44078601 None:intergenic 45.0%
CAACACTAAGGCCTAATGTG+AGG - chr1_4:44078580-44078599 Msa0164580:CDS 45.0%
TCAGCAATGACCCTCACATT+AGG + chr1_4:44078594-44078613 None:intergenic 45.0%
AAGCCACTCAACGAAATTGC+TGG - chr1_4:44078881-44078900 Msa0164580:intron 45.0%
AGCCACTCAACGAAATTGCT+GGG - chr1_4:44078882-44078901 Msa0164580:intron 45.0%
GAAAGCAACCAATAGCAAGG+TGG - chr1_4:44077903-44077922 Msa0164580:three_prime_UTR 45.0%
! GGGAAATACCACCTTGCTAT+TGG + chr1_4:44077914-44077933 None:intergenic 45.0%
GCATTACCACCAAATGCCAA+AGG - chr1_4:44077959-44077978 Msa0164580:three_prime_UTR 45.0%
! GATTTCTTGGTGGTTTCGTC+AGG + chr1_4:44078441-44078460 None:intergenic 45.0%
!! TGTTGCTTTGGCTGTTCCTT+AGG - chr1_4:44078518-44078537 Msa0164580:three_prime_UTR 45.0%
TGTTCCTTAGGTTCTCTCCA+AGG - chr1_4:44078530-44078549 Msa0164580:three_prime_UTR 45.0%
CTCACATTAGGCCTTAGTGT+TGG + chr1_4:44078582-44078601 None:intergenic 45.0%
CAACACTAAGGCCTAATGTG+AGG - chr1_4:44078580-44078599 Msa0164580:CDS 45.0%
TCAGCAATGACCCTCACATT+AGG + chr1_4:44078594-44078613 None:intergenic 45.0%
AAGCCACTCAACGAAATTGC+TGG - chr1_4:44078881-44078900 Msa0164580:intron 45.0%
AGCCACTCAACGAAATTGCT+GGG - chr1_4:44078882-44078901 Msa0164580:intron 45.0%
AAGGTGGTATTTCCCACCAG+AGG - chr1_4:44077919-44077938 Msa0164580:three_prime_UTR 50.0%
ACCACCAAATGCCAAAGGAC+TGG - chr1_4:44077964-44077983 Msa0164580:three_prime_UTR 50.0%
ACCAGTCCTTTGGCATTTGG+TGG + chr1_4:44077968-44077987 None:intergenic 50.0%
ACCAAATGCCAAAGGACTGG+TGG - chr1_4:44077967-44077986 Msa0164580:three_prime_UTR 50.0%
ACCACCAGTCCTTTGGCATT+TGG + chr1_4:44077971-44077990 None:intergenic 50.0%
GGTGTGGATCATTGAAGCCA+AGG - chr1_4:44077988-44078007 Msa0164580:three_prime_UTR 50.0%
GGATCATTGAAGCCAAGGTG+TGG - chr1_4:44077993-44078012 Msa0164580:three_prime_UTR 50.0%
TCAGCCTTGGAGAGAACCTA+AGG + chr1_4:44078537-44078556 None:intergenic 50.0%
!! TTAGTGTTGGCAGCAGAGCA+AGG + chr1_4:44078569-44078588 None:intergenic 50.0%
TTGCTCTGCTGCCAACACTA+AGG - chr1_4:44078568-44078587 Msa0164580:CDS 50.0%
GTGAGGGTCATTGCTGAATG+TGG - chr1_4:44078597-44078616 Msa0164580:intron 50.0%
AGCCCAGCAATTTCGTTGAG+TGG + chr1_4:44078887-44078906 None:intergenic 50.0%
CTATCAAGCGTCCTGACTAG+TGG + chr1_4:44078912-44078931 None:intergenic 50.0%
AAGGTGGTATTTCCCACCAG+AGG - chr1_4:44077919-44077938 Msa0164580:three_prime_UTR 50.0%
ACCACCAAATGCCAAAGGAC+TGG - chr1_4:44077964-44077983 Msa0164580:three_prime_UTR 50.0%
ACCAGTCCTTTGGCATTTGG+TGG + chr1_4:44077968-44077987 None:intergenic 50.0%
ACCAAATGCCAAAGGACTGG+TGG - chr1_4:44077967-44077986 Msa0164580:three_prime_UTR 50.0%
ACCACCAGTCCTTTGGCATT+TGG + chr1_4:44077971-44077990 None:intergenic 50.0%
GGTGTGGATCATTGAAGCCA+AGG - chr1_4:44077988-44078007 Msa0164580:three_prime_UTR 50.0%
GGATCATTGAAGCCAAGGTG+TGG - chr1_4:44077993-44078012 Msa0164580:three_prime_UTR 50.0%
TCAGCCTTGGAGAGAACCTA+AGG + chr1_4:44078537-44078556 None:intergenic 50.0%
!! TTAGTGTTGGCAGCAGAGCA+AGG + chr1_4:44078569-44078588 None:intergenic 50.0%
TTGCTCTGCTGCCAACACTA+AGG - chr1_4:44078568-44078587 Msa0164580:CDS 50.0%
GTGAGGGTCATTGCTGAATG+TGG - chr1_4:44078597-44078616 Msa0164580:intron 50.0%
AGCCCAGCAATTTCGTTGAG+TGG + chr1_4:44078887-44078906 None:intergenic 50.0%
CTATCAAGCGTCCTGACTAG+TGG + chr1_4:44078912-44078931 None:intergenic 50.0%
! ATGCCAAAGGACTGGTGGTG+TGG - chr1_4:44077972-44077991 Msa0164580:three_prime_UTR 55.0%
GATCCACACCACCAGTCCTT+TGG + chr1_4:44077978-44077997 None:intergenic 55.0%
! ATGCCAAAGGACTGGTGGTG+TGG - chr1_4:44077972-44077991 Msa0164580:three_prime_UTR 55.0%
GATCCACACCACCAGTCCTT+TGG + chr1_4:44077978-44077997 None:intergenic 55.0%
TGCTGGGCTGACCACTAGTC+AGG - chr1_4:44078898-44078917 Msa0164580:intron 60.0%
TGCTGGGCTGACCACTAGTC+AGG - chr1_4:44078898-44078917 Msa0164580:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 44077861 44079280 44077861 ID=Msa0164580;Name=Msa0164580
chr1_4 mRNA 44077861 44079280 44077861 ID=Msa0164580-mRNA-1;Parent=Msa0164580;Name=Msa0164580-mRNA-1;_AED=0.00;_eAED=0.00;_QI=111|1|1|1|1|0.66|3|453|28
chr1_4 exon 44077861 44078276 44077861 ID=Msa0164580-mRNA-1:exon:12611;Parent=Msa0164580-mRNA-1
chr1_4 exon 44078516 44078601 44078516 ID=Msa0164580-mRNA-1:exon:12610;Parent=Msa0164580-mRNA-1
chr1_4 exon 44079132 44079280 44079132 ID=Msa0164580-mRNA-1:exon:12609;Parent=Msa0164580-mRNA-1
chr1_4 five_prime_UTR 44079170 44079280 44079170 ID=Msa0164580-mRNA-1:five_prime_utr;Parent=Msa0164580-mRNA-1
chr1_4 CDS 44079132 44079169 44079132 ID=Msa0164580-mRNA-1:cds;Parent=Msa0164580-mRNA-1
chr1_4 CDS 44078553 44078601 44078553 ID=Msa0164580-mRNA-1:cds;Parent=Msa0164580-mRNA-1
chr1_4 three_prime_UTR 44078516 44078552 44078516 ID=Msa0164580-mRNA-1:three_prime_utr;Parent=Msa0164580-mRNA-1
chr1_4 three_prime_UTR 44077861 44078276 44077861 ID=Msa0164580-mRNA-1:three_prime_utr;Parent=Msa0164580-mRNA-1
Gene Sequence

>Msa0164580

ATGCCAAAGGACTGGTGGTGTGGATCATTGAAGCCAAGGTTCTCTCCAAGGCTGAACTACAATTCCTTGCTCTGCTGCCAACACTAA

Protein sequence

>Msa0164580

MPKDWWCGSLKPRFSPRLNYNSLLCCQH*