AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0318320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0318320 MtrunA17_Chr2g0291941 87.054 224 3 2 1 198 1 224 2.95e-135 379
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0318320 AT1G31330.1 62.946 224 54 4 1 198 1 221 1.87e-90 265

Find 55 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAGGAGAGCAGTGATTTA+AGG 0.194516 2_4:-16847626 None:intergenic
TCTTAGGGTTGAGGTGGGTT+TGG 0.281147 2_4:+16849304 None:intergenic
TTTGGTTTATGAGGTAGTTT+TGG 0.294416 2_4:+16849281 None:intergenic
ATGATGTTGGTTGAGAGTTT+TGG 0.311230 2_4:+16849263 None:intergenic
TGTTCCACTTGCTTCTAGAT+TGG 0.359779 2_4:-16848757 Msa0318320:CDS
AAGAGAAGGTTTGATAACTA+TGG 0.369761 2_4:-16848975 Msa0318320:CDS
TTGTATATTGCTGGTTGGAT+TGG 0.374422 2_4:-16848852 Msa0318320:CDS
GTGGGTTTGGAGAGGTTAGT+TGG 0.391367 2_4:+16849317 None:intergenic
GTTGGATTGGGTGGGTTGGT+AGG 0.393102 2_4:-16848839 Msa0318320:CDS
CAAGGAGAGCAGTGATTTAA+GGG 0.397162 2_4:-16847625 None:intergenic
TGTATATTGCTGGTTGGATT+GGG 0.400227 2_4:-16848851 Msa0318320:CDS
GCTGGTTGGATTGGGTGGGT+TGG 0.407168 2_4:-16848843 Msa0318320:CDS
GCCAGCGCTGGAGCGCTGTC+CGG 0.413463 2_4:+16849023 None:intergenic
TTTGGTCTTAGGGTTGAGGT+GGG 0.434939 2_4:+16849299 None:intergenic
ATAATAATCTCTTTCTGAGT+AGG 0.435495 2_4:+16848783 None:intergenic
TATTGCTGGTTGGATTGGGT+GGG 0.438882 2_4:-16848847 Msa0318320:CDS
ATAGTTATCAAACCTTCTCT+TGG 0.439023 2_4:+16848977 None:intergenic
GGGTGAAGCTTATTAATTTG+TGG 0.449217 2_4:+16847700 None:intergenic
TCCGGACAGCGCTCCAGCGC+TGG 0.451381 2_4:-16849024 Msa0318320:CDS
ATATTGCTGGTTGGATTGGG+TGG 0.459491 2_4:-16848848 Msa0318320:CDS
TAGATTTGAGTTTACATCGT+TGG 0.460617 2_4:+16849211 None:intergenic
AACTCTCTGTAAGCAGCAAT+AGG 0.463985 2_4:+16848714 None:intergenic
GAATGGTGATCAAAGACATT+GGG 0.484178 2_4:-16848904 Msa0318320:CDS
TTGTTGACTCATTGTGTGGA+TGG 0.485766 2_4:-16847890 Msa0318320:CDS
GGTTTGTTGTGTGGTGCTGA+TGG 0.487070 2_4:-16848945 Msa0318320:CDS
GGGTTGAGGTGGGTTTGGAG+AGG 0.489158 2_4:+16849309 None:intergenic
ATCCCTCAAGCTTTATGCTC+CGG 0.499000 2_4:-16849042 Msa0318320:CDS
TCAATCAACTTCATATACTT+AGG 0.501017 2_4:+16847747 None:intergenic
TGTGCTGCAGTGGATGATGT+TGG 0.507380 2_4:+16849250 None:intergenic
AAAAGAAACTTAGACATCCT+TGG 0.511183 2_4:+16848671 None:intergenic
TTTGATAACTATGGAAAGCA+AGG 0.512706 2_4:-16848966 Msa0318320:CDS
TTACCACATTTGATAGTGAA+TGG 0.520029 2_4:-16848921 Msa0318320:CDS
TTTGAGTTTACATCGTTGGT+TGG 0.526095 2_4:+16849215 None:intergenic
TTTATTGTTGACTCATTGTG+TGG 0.527806 2_4:-16847894 Msa0318320:CDS
ATGTCGGCGACAGCGGGGAG+TGG 0.529776 2_4:+16849140 None:intergenic
TTTCTTGGTTTGTGCTGCAG+TGG 0.533687 2_4:+16849240 None:intergenic
ATGATATTGATCAAGGATGC+AGG 0.533903 2_4:-16847943 Msa0318320:CDS
AGAGAGGATGATATTGATCA+AGG 0.536833 2_4:-16847950 Msa0318320:CDS
GTCCGGAGCATAAAGCTTGA+GGG 0.543561 2_4:+16849040 None:intergenic
GAAGCTTATTAATTTGTGGA+AGG 0.551262 2_4:+16847704 None:intergenic
GCAGGAAGGGTGATTATGAG+AGG 0.553668 2_4:-16847925 Msa0318320:CDS
GGAAGGGTGATTATGAGAGG+AGG 0.563183 2_4:-16847922 Msa0318320:CDS
TGTCCGGAGCATAAAGCTTG+AGG 0.578321 2_4:+16849039 None:intergenic
GCTTACAGAGAGTTGTTGAA+TGG 0.589659 2_4:-16848705 Msa0318320:CDS
TGAATGGTGATCAAAGACAT+TGG 0.591211 2_4:-16848905 Msa0318320:CDS
AAAACCAATCTAGAAGCAAG+TGG 0.593997 2_4:+16848753 None:intergenic
ATTGATCAAGGATGCAGGAA+GGG 0.594187 2_4:-16847938 Msa0318320:CDS
CGGGGAGTGGTGATGAGATG+AGG 0.601172 2_4:+16849153 None:intergenic
CAGTTGAGAAAACCAAGAGA+AGG 0.621236 2_4:-16848989 Msa0318320:CDS
TATTGATCAAGGATGCAGGA+AGG 0.633297 2_4:-16847939 Msa0318320:CDS
GAAGGGTGATTATGAGAGGA+GGG 0.659997 2_4:-16847921 Msa0318320:CDS
GGAAAGCAAGGTTTGTTGTG+TGG 0.661769 2_4:-16848954 Msa0318320:CDS
TCACCATTCACTATCAAATG+TGG 0.665222 2_4:+16848918 None:intergenic
GAATGGTGAACTCATTGCCA+AGG 0.676808 2_4:-16848688 Msa0318320:CDS
AATGGTGATCAAAGACATTG+GGG 0.721922 2_4:-16848903 Msa0318320:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATGAAATTTTGTTATTTTT+AGG - chr2_4:16848919-16848938 Msa0318320:CDS 10.0%
!!! AATGAAATTTTGTTATTTTT+AGG - chr2_4:16848919-16848938 Msa0318320:CDS 10.0%
!!! TTTGAAATATCAATAATGTA+AGG + chr2_4:16848455-16848474 None:intergenic 15.0%
!!! TGAAATTAAATTGGTAATAT+TGG - chr2_4:16848537-16848556 Msa0318320:intron 15.0%
!!! GAAATTAAATTGGTAATATT+GGG - chr2_4:16848538-16848557 Msa0318320:intron 15.0%
!!! AAATTAAATTGGTAATATTG+GGG - chr2_4:16848539-16848558 Msa0318320:intron 15.0%
!! GAATTAAAAATTTCATTGAA+TGG + chr2_4:16848824-16848843 None:intergenic 15.0%
!!! TTTGAAATATCAATAATGTA+AGG + chr2_4:16848455-16848474 None:intergenic 15.0%
!!! TGAAATTAAATTGGTAATAT+TGG - chr2_4:16848537-16848556 Msa0318320:intron 15.0%
!!! GAAATTAAATTGGTAATATT+GGG - chr2_4:16848538-16848557 Msa0318320:intron 15.0%
!!! AAATTAAATTGGTAATATTG+GGG - chr2_4:16848539-16848558 Msa0318320:intron 15.0%
!! GAATTAAAAATTTCATTGAA+TGG + chr2_4:16848824-16848843 None:intergenic 15.0%
!!! ATATTGTTTTTGTATATTGC+TGG - chr2_4:16848098-16848117 Msa0318320:intron 20.0%
!!! AGTTTCTTTTGTTTTCAAAA+AGG - chr2_4:16848301-16848320 Msa0318320:intron 20.0%
!! ATACTACAATTTAACCAATA+AGG + chr2_4:16848418-16848437 None:intergenic 20.0%
!! GGACTAAAATGAAATTAAAT+TGG - chr2_4:16848528-16848547 Msa0318320:intron 20.0%
!!! TTGATTAACATTTTGCAATT+AGG - chr2_4:16848628-16848647 Msa0318320:intron 20.0%
!! CAATTAGGTTTCAAAAATTA+TGG - chr2_4:16848643-16848662 Msa0318320:intron 20.0%
!! AAACATAAACTAATGTATGT+GGG - chr2_4:16848878-16848897 Msa0318320:intron 20.0%
!! TCATGAAGAAAAAAATGAAA+GGG + chr2_4:16849282-16849301 None:intergenic 20.0%
!! TTCATGAAGAAAAAAATGAA+AGG + chr2_4:16849283-16849302 None:intergenic 20.0%
!!! CATTTTTTTCTTCATGAAAA+TGG - chr2_4:16849285-16849304 Msa0318320:CDS 20.0%
!!! ATATTGTTTTTGTATATTGC+TGG - chr2_4:16848098-16848117 Msa0318320:intron 20.0%
!!! AGTTTCTTTTGTTTTCAAAA+AGG - chr2_4:16848301-16848320 Msa0318320:intron 20.0%
!! ATACTACAATTTAACCAATA+AGG + chr2_4:16848418-16848437 None:intergenic 20.0%
!! GGACTAAAATGAAATTAAAT+TGG - chr2_4:16848528-16848547 Msa0318320:intron 20.0%
!!! TTGATTAACATTTTGCAATT+AGG - chr2_4:16848628-16848647 Msa0318320:intron 20.0%
!! CAATTAGGTTTCAAAAATTA+TGG - chr2_4:16848643-16848662 Msa0318320:intron 20.0%
!! AAACATAAACTAATGTATGT+GGG - chr2_4:16848878-16848897 Msa0318320:intron 20.0%
!! TCATGAAGAAAAAAATGAAA+GGG + chr2_4:16849282-16849301 None:intergenic 20.0%
!! TTCATGAAGAAAAAAATGAA+AGG + chr2_4:16849283-16849302 None:intergenic 20.0%
!!! CATTTTTTTCTTCATGAAAA+TGG - chr2_4:16849285-16849304 Msa0318320:CDS 20.0%
! ATATACAAAAACAATATCCC+TGG + chr2_4:16848095-16848114 None:intergenic 25.0%
! ATAATAATCTCTTTCTGAGT+AGG + chr2_4:16848179-16848198 None:intergenic 25.0%
! GATTGAGTAAATATCCTTAT+TGG - chr2_4:16848401-16848420 Msa0318320:intron 25.0%
! TTTAGTCCTTCAAATACTAA+AGG + chr2_4:16848516-16848535 None:intergenic 25.0%
! TTTGTAACCAATCTAATTAG+AGG - chr2_4:16848599-16848618 Msa0318320:intron 25.0%
! AGTTTCAAATAACTTAGATG+TGG + chr2_4:16848767-16848786 None:intergenic 25.0%
! CAAACATAAACTAATGTATG+TGG - chr2_4:16848877-16848896 Msa0318320:intron 25.0%
!!! TGTTGGTTTTTTGTTGTTTA+TGG - chr2_4:16848973-16848992 Msa0318320:CDS 25.0%
! TCAATCAACTTCATATACTT+AGG + chr2_4:16849215-16849234 None:intergenic 25.0%
! ATATACAAAAACAATATCCC+TGG + chr2_4:16848095-16848114 None:intergenic 25.0%
! ATAATAATCTCTTTCTGAGT+AGG + chr2_4:16848179-16848198 None:intergenic 25.0%
! GATTGAGTAAATATCCTTAT+TGG - chr2_4:16848401-16848420 Msa0318320:intron 25.0%
! TTTAGTCCTTCAAATACTAA+AGG + chr2_4:16848516-16848535 None:intergenic 25.0%
! TTTGTAACCAATCTAATTAG+AGG - chr2_4:16848599-16848618 Msa0318320:intron 25.0%
! AGTTTCAAATAACTTAGATG+TGG + chr2_4:16848767-16848786 None:intergenic 25.0%
! CAAACATAAACTAATGTATG+TGG - chr2_4:16848877-16848896 Msa0318320:intron 25.0%
!!! TGTTGGTTTTTTGTTGTTTA+TGG - chr2_4:16848973-16848992 Msa0318320:CDS 25.0%
! TCAATCAACTTCATATACTT+AGG + chr2_4:16849215-16849234 None:intergenic 25.0%
!! TTTGGTTTATGAGGTAGTTT+TGG + chr2_4:16847681-16847700 None:intergenic 30.0%
! TAGATTTGAGTTTACATCGT+TGG + chr2_4:16847751-16847770 None:intergenic 30.0%
!!! AATTGTTTTGATTCTCTGCA+TGG + chr2_4:16847858-16847877 None:intergenic 30.0%
!!! TTTCTCAACTGTTGCTTTTA+TGG + chr2_4:16847961-16847980 None:intergenic 30.0%
ATAGTTATCAAACCTTCTCT+TGG + chr2_4:16847985-16848004 None:intergenic 30.0%
! AAGAGAAGGTTTGATAACTA+TGG - chr2_4:16847984-16848003 Msa0318320:intron 30.0%
! TTTGATAACTATGGAAAGCA+AGG - chr2_4:16847993-16848012 Msa0318320:intron 30.0%
!! TTACCACATTTGATAGTGAA+TGG - chr2_4:16848038-16848057 Msa0318320:intron 30.0%
!! TGTTTTTGTATATTGCTGGT+TGG - chr2_4:16848102-16848121 Msa0318320:intron 30.0%
!!! CTTCTAGATTGGTTTTTAGA+GGG - chr2_4:16848213-16848232 Msa0318320:intron 30.0%
AAAAGAAACTTAGACATCCT+TGG + chr2_4:16848291-16848310 None:intergenic 30.0%
TACGGATTCGATTCAAATAT+TGG + chr2_4:16848493-16848512 None:intergenic 30.0%
TCCTTCAAATACTAAAGGTA+CGG + chr2_4:16848511-16848530 None:intergenic 30.0%
AATTCGTCCTCTAATTAGAT+TGG + chr2_4:16848609-16848628 None:intergenic 30.0%
TCTTACAAAACGAATTTGTG+AGG + chr2_4:16848733-16848752 None:intergenic 30.0%
!! TTTATTGTTGACTCATTGTG+TGG - chr2_4:16849065-16849084 Msa0318320:CDS 30.0%
!!! GTTCCTTTTTTACTCAAATG+TGG - chr2_4:16849178-16849197 Msa0318320:CDS 30.0%
AGTCCACATTTGAGTAAAAA+AGG + chr2_4:16849184-16849203 None:intergenic 30.0%
! TTTTTACTCAAATGTGGACT+TGG - chr2_4:16849184-16849203 Msa0318320:CDS 30.0%
!! GAAGCTTATTAATTTGTGGA+AGG + chr2_4:16849258-16849277 None:intergenic 30.0%
!! TTTGGTTTATGAGGTAGTTT+TGG + chr2_4:16847681-16847700 None:intergenic 30.0%
! TAGATTTGAGTTTACATCGT+TGG + chr2_4:16847751-16847770 None:intergenic 30.0%
!!! AATTGTTTTGATTCTCTGCA+TGG + chr2_4:16847858-16847877 None:intergenic 30.0%
!!! TTTCTCAACTGTTGCTTTTA+TGG + chr2_4:16847961-16847980 None:intergenic 30.0%
ATAGTTATCAAACCTTCTCT+TGG + chr2_4:16847985-16848004 None:intergenic 30.0%
! AAGAGAAGGTTTGATAACTA+TGG - chr2_4:16847984-16848003 Msa0318320:intron 30.0%
! TTTGATAACTATGGAAAGCA+AGG - chr2_4:16847993-16848012 Msa0318320:intron 30.0%
!! TTACCACATTTGATAGTGAA+TGG - chr2_4:16848038-16848057 Msa0318320:intron 30.0%
!! TGTTTTTGTATATTGCTGGT+TGG - chr2_4:16848102-16848121 Msa0318320:intron 30.0%
!!! CTTCTAGATTGGTTTTTAGA+GGG - chr2_4:16848213-16848232 Msa0318320:intron 30.0%
AAAAGAAACTTAGACATCCT+TGG + chr2_4:16848291-16848310 None:intergenic 30.0%
TACGGATTCGATTCAAATAT+TGG + chr2_4:16848493-16848512 None:intergenic 30.0%
TCCTTCAAATACTAAAGGTA+CGG + chr2_4:16848511-16848530 None:intergenic 30.0%
AATTCGTCCTCTAATTAGAT+TGG + chr2_4:16848609-16848628 None:intergenic 30.0%
TCTTACAAAACGAATTTGTG+AGG + chr2_4:16848733-16848752 None:intergenic 30.0%
!! TTTATTGTTGACTCATTGTG+TGG - chr2_4:16849065-16849084 Msa0318320:CDS 30.0%
!!! GTTCCTTTTTTACTCAAATG+TGG - chr2_4:16849178-16849197 Msa0318320:CDS 30.0%
AGTCCACATTTGAGTAAAAA+AGG + chr2_4:16849184-16849203 None:intergenic 30.0%
! TTTTTACTCAAATGTGGACT+TGG - chr2_4:16849184-16849203 Msa0318320:CDS 30.0%
!! GAAGCTTATTAATTTGTGGA+AGG + chr2_4:16849258-16849277 None:intergenic 30.0%
!!! ATGAGGTAGTTTTGGTCTTA+GGG + chr2_4:16847673-16847692 None:intergenic 35.0%
!!! TATGAGGTAGTTTTGGTCTT+AGG + chr2_4:16847674-16847693 None:intergenic 35.0%
!!! GTTGAGAGTTTTGGTTTATG+AGG + chr2_4:16847690-16847709 None:intergenic 35.0%
!! ATGATGTTGGTTGAGAGTTT+TGG + chr2_4:16847699-16847718 None:intergenic 35.0%
! TTTGAGTTTACATCGTTGGT+TGG + chr2_4:16847747-16847766 None:intergenic 35.0%
! GATTGATTGTTTCTCACGTT+TGG + chr2_4:16847883-16847902 None:intergenic 35.0%
TCACCATTCACTATCAAATG+TGG + chr2_4:16848044-16848063 None:intergenic 35.0%
TGAATGGTGATCAAAGACAT+TGG - chr2_4:16848054-16848073 Msa0318320:intron 35.0%
GAATGGTGATCAAAGACATT+GGG - chr2_4:16848055-16848074 Msa0318320:intron 35.0%
AATGGTGATCAAAGACATTG+GGG - chr2_4:16848056-16848075 Msa0318320:intron 35.0%
! TTGTATATTGCTGGTTGGAT+TGG - chr2_4:16848107-16848126 Msa0318320:intron 35.0%
! TGTATATTGCTGGTTGGATT+GGG - chr2_4:16848108-16848127 Msa0318320:intron 35.0%
AAAACCAATCTAGAAGCAAG+TGG + chr2_4:16848209-16848228 None:intergenic 35.0%
!!! GCTTCTAGATTGGTTTTTAG+AGG - chr2_4:16848212-16848231 Msa0318320:intron 35.0%
TCCGTACCTTTAGTATTTGA+AGG - chr2_4:16848507-16848526 Msa0318320:intron 35.0%
AGAGAGGATGATATTGATCA+AGG - chr2_4:16849009-16849028 Msa0318320:CDS 35.0%
ATGATATTGATCAAGGATGC+AGG - chr2_4:16849016-16849035 Msa0318320:CDS 35.0%
! GGGTGAAGCTTATTAATTTG+TGG + chr2_4:16849262-16849281 None:intergenic 35.0%
GCTAGTACAAAAATGAAGCA+AGG - chr2_4:16849316-16849335 Msa0318320:CDS 35.0%
!!! ATGAGGTAGTTTTGGTCTTA+GGG + chr2_4:16847673-16847692 None:intergenic 35.0%
!!! TATGAGGTAGTTTTGGTCTT+AGG + chr2_4:16847674-16847693 None:intergenic 35.0%
!!! GTTGAGAGTTTTGGTTTATG+AGG + chr2_4:16847690-16847709 None:intergenic 35.0%
!! ATGATGTTGGTTGAGAGTTT+TGG + chr2_4:16847699-16847718 None:intergenic 35.0%
! TTTGAGTTTACATCGTTGGT+TGG + chr2_4:16847747-16847766 None:intergenic 35.0%
! GATTGATTGTTTCTCACGTT+TGG + chr2_4:16847883-16847902 None:intergenic 35.0%
TCACCATTCACTATCAAATG+TGG + chr2_4:16848044-16848063 None:intergenic 35.0%
TGAATGGTGATCAAAGACAT+TGG - chr2_4:16848054-16848073 Msa0318320:intron 35.0%
GAATGGTGATCAAAGACATT+GGG - chr2_4:16848055-16848074 Msa0318320:intron 35.0%
AATGGTGATCAAAGACATTG+GGG - chr2_4:16848056-16848075 Msa0318320:intron 35.0%
! TTGTATATTGCTGGTTGGAT+TGG - chr2_4:16848107-16848126 Msa0318320:intron 35.0%
! TGTATATTGCTGGTTGGATT+GGG - chr2_4:16848108-16848127 Msa0318320:intron 35.0%
AAAACCAATCTAGAAGCAAG+TGG + chr2_4:16848209-16848228 None:intergenic 35.0%
!!! GCTTCTAGATTGGTTTTTAG+AGG - chr2_4:16848212-16848231 Msa0318320:intron 35.0%
TCCGTACCTTTAGTATTTGA+AGG - chr2_4:16848507-16848526 Msa0318320:intron 35.0%
AGAGAGGATGATATTGATCA+AGG - chr2_4:16849009-16849028 Msa0318320:CDS 35.0%
ATGATATTGATCAAGGATGC+AGG - chr2_4:16849016-16849035 Msa0318320:CDS 35.0%
! GGGTGAAGCTTATTAATTTG+TGG + chr2_4:16849262-16849281 None:intergenic 35.0%
GCTAGTACAAAAATGAAGCA+AGG - chr2_4:16849316-16849335 Msa0318320:CDS 35.0%
!!! TAGTTTTGGTCTTAGGGTTG+AGG + chr2_4:16847667-16847686 None:intergenic 40.0%
!!! CATCGTTGGTTGGTTTTTCT+TGG + chr2_4:16847737-16847756 None:intergenic 40.0%
TTGATTCTCTGCATGGTGTT+AGG + chr2_4:16847851-16847870 None:intergenic 40.0%
CAGTTGAGAAAACCAAGAGA+AGG - chr2_4:16847970-16847989 Msa0318320:intron 40.0%
TGTTCCACTTGCTTCTAGAT+TGG - chr2_4:16848202-16848221 Msa0318320:intron 40.0%
!! TGGTTTTTAGAGGGTTCAGT+TGG - chr2_4:16848222-16848241 Msa0318320:intron 40.0%
AACTCTCTGTAAGCAGCAAT+AGG + chr2_4:16848248-16848267 None:intergenic 40.0%
GCTTACAGAGAGTTGTTGAA+TGG - chr2_4:16848254-16848273 Msa0318320:intron 40.0%
TTGCAATCGTGACTTTGTGT+TGG - chr2_4:16848956-16848975 Msa0318320:CDS 40.0%
! TGGTGATTTTCAGACAAGAG+AGG - chr2_4:16848993-16849012 Msa0318320:CDS 40.0%
TATTGATCAAGGATGCAGGA+AGG - chr2_4:16849020-16849039 Msa0318320:CDS 40.0%
ATTGATCAAGGATGCAGGAA+GGG - chr2_4:16849021-16849040 Msa0318320:CDS 40.0%
!! TTGTTGACTCATTGTGTGGA+TGG - chr2_4:16849069-16849088 Msa0318320:CDS 40.0%
!!! TAGTTTTGGTCTTAGGGTTG+AGG + chr2_4:16847667-16847686 None:intergenic 40.0%
!!! CATCGTTGGTTGGTTTTTCT+TGG + chr2_4:16847737-16847756 None:intergenic 40.0%
TTGATTCTCTGCATGGTGTT+AGG + chr2_4:16847851-16847870 None:intergenic 40.0%
CAGTTGAGAAAACCAAGAGA+AGG - chr2_4:16847970-16847989 Msa0318320:intron 40.0%
TGTTCCACTTGCTTCTAGAT+TGG - chr2_4:16848202-16848221 Msa0318320:intron 40.0%
!! TGGTTTTTAGAGGGTTCAGT+TGG - chr2_4:16848222-16848241 Msa0318320:intron 40.0%
AACTCTCTGTAAGCAGCAAT+AGG + chr2_4:16848248-16848267 None:intergenic 40.0%
GCTTACAGAGAGTTGTTGAA+TGG - chr2_4:16848254-16848273 Msa0318320:intron 40.0%
TTGCAATCGTGACTTTGTGT+TGG - chr2_4:16848956-16848975 Msa0318320:CDS 40.0%
! TGGTGATTTTCAGACAAGAG+AGG - chr2_4:16848993-16849012 Msa0318320:CDS 40.0%
TATTGATCAAGGATGCAGGA+AGG - chr2_4:16849020-16849039 Msa0318320:CDS 40.0%
ATTGATCAAGGATGCAGGAA+GGG - chr2_4:16849021-16849040 Msa0318320:CDS 40.0%
!! TTGTTGACTCATTGTGTGGA+TGG - chr2_4:16849069-16849088 Msa0318320:CDS 40.0%
!! TTTGGTCTTAGGGTTGAGGT+GGG + chr2_4:16847663-16847682 None:intergenic 45.0%
!!! TTTTGGTCTTAGGGTTGAGG+TGG + chr2_4:16847664-16847683 None:intergenic 45.0%
!! TTTCTTGGTTTGTGCTGCAG+TGG + chr2_4:16847722-16847741 None:intergenic 45.0%
! ATCCCTCAAGCTTTATGCTC+CGG - chr2_4:16847917-16847936 Msa0318320:CDS 45.0%
!! GGAAAGCAAGGTTTGTTGTG+TGG - chr2_4:16848005-16848024 Msa0318320:intron 45.0%
! ATATTGCTGGTTGGATTGGG+TGG - chr2_4:16848111-16848130 Msa0318320:intron 45.0%
! TATTGCTGGTTGGATTGGGT+GGG - chr2_4:16848112-16848131 Msa0318320:intron 45.0%
GAATGGTGAACTCATTGCCA+AGG - chr2_4:16848271-16848290 Msa0318320:intron 45.0%
GAAGGGTGATTATGAGAGGA+GGG - chr2_4:16849038-16849057 Msa0318320:CDS 45.0%
!! TTTGGTCTTAGGGTTGAGGT+GGG + chr2_4:16847663-16847682 None:intergenic 45.0%
!!! TTTTGGTCTTAGGGTTGAGG+TGG + chr2_4:16847664-16847683 None:intergenic 45.0%
!! TTTCTTGGTTTGTGCTGCAG+TGG + chr2_4:16847722-16847741 None:intergenic 45.0%
! ATCCCTCAAGCTTTATGCTC+CGG - chr2_4:16847917-16847936 Msa0318320:CDS 45.0%
!! GGAAAGCAAGGTTTGTTGTG+TGG - chr2_4:16848005-16848024 Msa0318320:intron 45.0%
! ATATTGCTGGTTGGATTGGG+TGG - chr2_4:16848111-16848130 Msa0318320:intron 45.0%
! TATTGCTGGTTGGATTGGGT+GGG - chr2_4:16848112-16848131 Msa0318320:intron 45.0%
GAATGGTGAACTCATTGCCA+AGG - chr2_4:16848271-16848290 Msa0318320:intron 45.0%
GAAGGGTGATTATGAGAGGA+GGG - chr2_4:16849038-16849057 Msa0318320:CDS 45.0%
GTGGGTTTGGAGAGGTTAGT+TGG + chr2_4:16847645-16847664 None:intergenic 50.0%
! TCTTAGGGTTGAGGTGGGTT+TGG + chr2_4:16847658-16847677 None:intergenic 50.0%
TGTGCTGCAGTGGATGATGT+TGG + chr2_4:16847712-16847731 None:intergenic 50.0%
! TTCTCTGCATGGTGTTAGGC+CGG + chr2_4:16847847-16847866 None:intergenic 50.0%
GTCCGGAGCATAAAGCTTGA+GGG + chr2_4:16847922-16847941 None:intergenic 50.0%
TGTCCGGAGCATAAAGCTTG+AGG + chr2_4:16847923-16847942 None:intergenic 50.0%
!! GGTTTGTTGTGTGGTGCTGA+TGG - chr2_4:16848014-16848033 Msa0318320:intron 50.0%
TGGGGTGAGTTTATCACACC+AGG - chr2_4:16848074-16848093 Msa0318320:intron 50.0%
GGGGTGAGTTTATCACACCA+GGG - chr2_4:16848075-16848094 Msa0318320:intron 50.0%
GCAGGAAGGGTGATTATGAG+AGG - chr2_4:16849034-16849053 Msa0318320:CDS 50.0%
GGAAGGGTGATTATGAGAGG+AGG - chr2_4:16849037-16849056 Msa0318320:CDS 50.0%
GTGGGTTTGGAGAGGTTAGT+TGG + chr2_4:16847645-16847664 None:intergenic 50.0%
! TCTTAGGGTTGAGGTGGGTT+TGG + chr2_4:16847658-16847677 None:intergenic 50.0%
TGTGCTGCAGTGGATGATGT+TGG + chr2_4:16847712-16847731 None:intergenic 50.0%
! TTCTCTGCATGGTGTTAGGC+CGG + chr2_4:16847847-16847866 None:intergenic 50.0%
GTCCGGAGCATAAAGCTTGA+GGG + chr2_4:16847922-16847941 None:intergenic 50.0%
TGTCCGGAGCATAAAGCTTG+AGG + chr2_4:16847923-16847942 None:intergenic 50.0%
!! GGTTTGTTGTGTGGTGCTGA+TGG - chr2_4:16848014-16848033 Msa0318320:intron 50.0%
TGGGGTGAGTTTATCACACC+AGG - chr2_4:16848074-16848093 Msa0318320:intron 50.0%
GGGGTGAGTTTATCACACCA+GGG - chr2_4:16848075-16848094 Msa0318320:intron 50.0%
GCAGGAAGGGTGATTATGAG+AGG - chr2_4:16849034-16849053 Msa0318320:CDS 50.0%
GGAAGGGTGATTATGAGAGG+AGG - chr2_4:16849037-16849056 Msa0318320:CDS 50.0%
! TGGTGTTAGGCCGGAGATGT+CGG + chr2_4:16847838-16847857 None:intergenic 55.0%
!!! GTTGCTTTTATGGCCAGCGC+TGG + chr2_4:16847951-16847970 None:intergenic 55.0%
!! GTTGGATTGGGTGGGTTGGT+AGG - chr2_4:16848120-16848139 Msa0318320:intron 55.0%
! TGGTGTTAGGCCGGAGATGT+CGG + chr2_4:16847838-16847857 None:intergenic 55.0%
!!! GTTGCTTTTATGGCCAGCGC+TGG + chr2_4:16847951-16847970 None:intergenic 55.0%
!! GTTGGATTGGGTGGGTTGGT+AGG - chr2_4:16848120-16848139 Msa0318320:intron 55.0%
! GGGTTGAGGTGGGTTTGGAG+AGG + chr2_4:16847653-16847672 None:intergenic 60.0%
! CGGGGAGTGGTGATGAGATG+AGG + chr2_4:16847809-16847828 None:intergenic 60.0%
! GCTGGTTGGATTGGGTGGGT+TGG - chr2_4:16848116-16848135 Msa0318320:intron 60.0%
! GGGTTGAGGTGGGTTTGGAG+AGG + chr2_4:16847653-16847672 None:intergenic 60.0%
! CGGGGAGTGGTGATGAGATG+AGG + chr2_4:16847809-16847828 None:intergenic 60.0%
! GCTGGTTGGATTGGGTGGGT+TGG - chr2_4:16848116-16848135 Msa0318320:intron 60.0%
ATGTCGGCGACAGCGGGGAG+TGG + chr2_4:16847822-16847841 None:intergenic 70.0%
CGGAGATGTCGGCGACAGCG+GGG + chr2_4:16847827-16847846 None:intergenic 70.0%
CCGGAGATGTCGGCGACAGC+GGG + chr2_4:16847828-16847847 None:intergenic 70.0%
CCCGCTGTCGCCGACATCTC+CGG - chr2_4:16847825-16847844 Msa0318320:three_prime_UTR 70.0%
GCCGGAGATGTCGGCGACAG+CGG + chr2_4:16847829-16847848 None:intergenic 70.0%
ATGTCGGCGACAGCGGGGAG+TGG + chr2_4:16847822-16847841 None:intergenic 70.0%
CGGAGATGTCGGCGACAGCG+GGG + chr2_4:16847827-16847846 None:intergenic 70.0%
CCGGAGATGTCGGCGACAGC+GGG + chr2_4:16847828-16847847 None:intergenic 70.0%
CCCGCTGTCGCCGACATCTC+CGG - chr2_4:16847825-16847844 Msa0318320:three_prime_UTR 70.0%
GCCGGAGATGTCGGCGACAG+CGG + chr2_4:16847829-16847848 None:intergenic 70.0%
TCCGGACAGCGCTCCAGCGC+TGG - chr2_4:16847935-16847954 Msa0318320:CDS 75.0%
!! GCCAGCGCTGGAGCGCTGTC+CGG + chr2_4:16847939-16847958 None:intergenic 75.0%
TCCGGACAGCGCTCCAGCGC+TGG - chr2_4:16847935-16847954 Msa0318320:CDS 75.0%
!! GCCAGCGCTGGAGCGCTGTC+CGG + chr2_4:16847939-16847958 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 16847627 16849354 16847627 ID=Msa0318320;Name=Msa0318320
chr2_4 mRNA 16847627 16849354 16847627 ID=Msa0318320-mRNA-1;Parent=Msa0318320;Name=Msa0318320-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0|0.25|1|0|0|4|256|227
chr2_4 exon 16847627 16847975 16847627 ID=Msa0318320-mRNA-1:exon:6359;Parent=Msa0318320-mRNA-1
chr2_4 exon 16848686 16848885 16848686 ID=Msa0318320-mRNA-1:exon:6358;Parent=Msa0318320-mRNA-1
chr2_4 exon 16848904 16849090 16848904 ID=Msa0318320-mRNA-1:exon:6357;Parent=Msa0318320-mRNA-1
chr2_4 exon 16849151 16849354 16849151 ID=Msa0318320-mRNA-1:exon:6356;Parent=Msa0318320-mRNA-1
chr2_4 CDS 16849151 16849354 16849151 ID=Msa0318320-mRNA-1:cds;Parent=Msa0318320-mRNA-1
chr2_4 CDS 16848904 16849090 16848904 ID=Msa0318320-mRNA-1:cds;Parent=Msa0318320-mRNA-1
chr2_4 CDS 16848686 16848885 16848686 ID=Msa0318320-mRNA-1:cds;Parent=Msa0318320-mRNA-1
chr2_4 CDS 16847883 16847975 16847883 ID=Msa0318320-mRNA-1:cds;Parent=Msa0318320-mRNA-1
chr2_4 three_prime_UTR 16847627 16847882 16847627 ID=Msa0318320-mRNA-1:three_prime_utr;Parent=Msa0318320-mRNA-1
Gene Sequence

>Msa0318320

ATGTCTCTAACAATTCCAACTAACCTCTCCAAACCCACCTCAACCCTAAGACCAAAACTACCTCATAAACCAAAACTCTCAACCAACATCATCCACTGCAGCACAAACCAAGAAAAACCAACCAACGATGTAAACTCAAATCTAAAAGCATTCTCAGCTGCACTAGCACTCTCATCAATCCTCATCTCATCACCACTCCCCGCTAAACAATCAATCAAAAAGCTTGAATCATCCCTCAAGCTTTATGCTCCGGACAGCGCTCCAGCGCTGGCCATAAAAGCAACAGTTGAGAAAACCAAGAGAAGGTTTGATAACTATGGAAAGCAAGGTTTGTTGTGTGGTGCTGATGGTTTACCACATTTGATAGTGAATGGTGATCAAAGACATTGGGGGATATTGTTTTTGTATATTGCTGGTTGGATTGGGTGGGTTGGTAGGAGTTACTTGATTGCTATTCGTGATGAGAAGAAACCTACTCAGAAAGAGATTATTATTGATGTTCCACTTGCTTCTAGATTGGTTTTTAGAGGGTTCAGTTGGCCTATTGCTGCTTACAGAGAGTTGTTGAATGGTGAACTCATTGCCAAGGATACAAGAGAGGATGATATTGATCAAGGATGCAGGAAGGGTGATTATGAGAGGAGGGTGCTTTTATTGTTGACTCATTGTGTGGATGGATCTTAA

Protein sequence

>Msa0318320

MSLTIPTNLSKPTSTLRPKLPHKPKLSTNIIHCSTNQEKPTNDVNSNLKAFSAALALSSILISSPLPAKQSIKKLESSLKLYAPDSAPALAIKATVEKTKRRFDNYGKQGLLCGADGLPHLIVNGDQRHWGILFLYIAGWIGWVGRSYLIAIRDEKKPTQKEIIIDVPLASRLVFRGFSWPIAAYRELLNGELIAKDTREDDIDQGCRKGDYERRVLLLLTHCVDGS*