AlfalfaGEDB | Msa0389890

M. sativa cultivar zhongmu-4 / Msa0389890

KEGG: K01770
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0015994 GO:0015995 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0018130 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576
PFAM: PF02542.19

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0389890	XP_003611062.1	93.213	221	8	1	13	226	13	233	9.35e-143	408

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0389890	sp\|Q9CAK8\|ISPF_ARATH	79.191	173	29	1	61	226	59	231	9.70e-96	282

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0389890	G7KC04	93.213	221	8	1	13	226	13	233	4.46e-143	408

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000180	Msa0389890	0.800063	1.718278e-48	-8.615850e-47
Msa0000220	Msa0389890	0.807011	6.225567e-50	-8.615850e-47
Msa0000610	Msa0389890	0.813471	2.517621e-51	-8.615850e-47
Msa0001510	Msa0389890	0.860011	2.779534e-63	-8.615850e-47
Msa0002110	Msa0389890	0.828857	7.118425e-55	-8.615850e-47
Msa0002690	Msa0389890	0.848120	7.506006e-60	-8.615850e-47
Msa0002700	Msa0389890	0.840743	7.235201e-58	-8.615850e-47
Msa0003340	Msa0389890	0.874472	6.574200e-68	-8.615850e-47
Msa0004180	Msa0389890	0.839831	1.251919e-57	-8.615850e-47
Msa0005190	Msa0389890	0.831695	1.442440e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0389890	MtrunA17_Chr5g0397211	93.213	221	8	1	13	226	13	233	8.60e-147	408
Msa0389890	MtrunA17_Chr7g0234811	70.297	101	30	0	1	101	1	101	5.12e-41	136

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0389890	AT1G63970.1	79.191	173	29	1	61	226	59	231	9.86e-97	282
Msa0389890	AT1G63970.2	74.747	99	18	1	61	152	59	157	2.53e-47	154

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Find 73 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATATACTGCAACTAGAA+TGG	0.495434	3_2:+437211	None:intergenic
AAACCATGGCCAACCCGAAA+AGG	0.483370	3_2:+440711	None:intergenic
AAAGAATAAGAGAATGGAAT+TGG	0.329681	3_2:+440867	None:intergenic
AACCAGGTTCCAATCGATGA+AGG	0.565616	3_2:+440685	None:intergenic
AAGAACCTTTGAAGGAGTAG+CGG	0.614741	3_2:+440734	None:intergenic
AAGAATAAGAGAATGGAATT+GGG	0.439995	3_2:+440868	None:intergenic
AATCTCCGCTACTCCTTCAA+AGG	0.556988	3_2:-440739	Msa0389890:CDS
AATGATCACAACAACCAAAA+TGG	0.346987	3_2:+437262	None:intergenic
AATTGGGTGAGAAGATTTGG+TGG	0.594739	3_2:+440884	None:intergenic
ACAAAATCTTATAGATTGTC+CGG	0.378334	3_2:-437326	Msa0389890:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAGGAAAAGAATAAGAGAA+TGG	+	chr3_2:437241-437260	None:intergenic	30.0%
CCAATAATTAAAGGATAACC+AGG	+	chr3_2:437433-437452	None:intergenic	30.0%
CCTGGTTATCCTTTAATTAT+TGG	-	chr3_2:437430-437449	Msa0389890:three_prime_UTR	30.0%
GGTTATCCTTTAATTATTGG+TGG	-	chr3_2:437433-437452	Msa0389890:three_prime_UTR	30.0%
TATAAAAATGAAAAGGGGCA+TGG	+	chr3_2:437520-437539	None:intergenic	30.0%
TCCATTGTAAGTTTGTGATT+AGG	-	chr3_2:437919-437938	Msa0389890:intron	30.0%
CCATTGTAAGTTTGTGATTA+GGG	-	chr3_2:437920-437939	Msa0389890:intron	30.0%
CATTGTAAGTTTGTGATTAG+GGG	-	chr3_2:437921-437940	Msa0389890:intron	30.0%
AATAAGCCAATCCAAACAAA+CGG	+	chr3_2:437947-437966	None:intergenic	30.0%
GGCTTATTTACTATGAAACA+CGG	-	chr3_2:437959-437978	Msa0389890:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	437163	440958	437163	ID=Msa0389890;Name=Msa0389890
chr3_2	mRNA	437163	440958	437163	ID=Msa0389890-mRNA-1;Parent=Msa0389890;Name=Msa0389890-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0\|0.5\|0.66\|1\|1\|1\|3\|302\|226
chr3_2	exon	437163	437698	437163	ID=Msa0389890-mRNA-1:exon:61;Parent=Msa0389890-mRNA-1
chr3_2	exon	439561	439691	439561	ID=Msa0389890-mRNA-1:exon:60;Parent=Msa0389890-mRNA-1
chr3_2	exon	440643	440958	440643	ID=Msa0389890-mRNA-1:exon:59;Parent=Msa0389890-mRNA-1
chr3_2	CDS	440643	440958	440643	ID=Msa0389890-mRNA-1:cds;Parent=Msa0389890-mRNA-1
chr3_2	CDS	439561	439691	439561	ID=Msa0389890-mRNA-1:cds;Parent=Msa0389890-mRNA-1
chr3_2	CDS	437465	437698	437465	ID=Msa0389890-mRNA-1:cds;Parent=Msa0389890-mRNA-1
chr3_2	three_prime_UTR	437163	437464	437163	ID=Msa0389890-mRNA-1:three_prime_utr;Parent=Msa0389890-mRNA-1

Gene Sequence

>Msa0389890

ATGTCTTCATCTTCTCTAACAGCTTCTTCTTACTCCTTCCCATTCACAACACCCACCAAATCTTCTCACCCAATTCCATTCTCTTATTCTTTTCCTCTCAAACACCATACCCTCCATCTCAAATCATCACCATCACTGTTTGTTTCAGCTTCAGGAGCTGCAACACCCACAGCCTCAGTTGAAATCGATAAATCCCCAATCTCCGCTACTCCTTCAAAGGTTCTTCCTTTTCGGGTTGGCCATGGTTTTGACCTTCATCGATTGGAACCTGGTTATCCTTTAATTATTGGTGGAATTAATATACCTCATGATAGAGGGGATGTTCTGCTTCACTGCGTGGTTGATGCAATTTTAGGGGCTTTAGGTCTTCCTGATATAGGACAGATTTTTCCTGATTCTGATCCTAAGTGGAAGGGTTGTGATTCTTCGGTGTTTGTCCATGAATCTGTCAGACTTATGCATGAGGCAGGTTATGATATTGGAAATTTAGATGCAACATTGATACTTCAGAGGCCGAAACTAAGCCCACACAAGGATGCTATCAAGGCCAACTTATCTGCACTGCTTGGAGTTGACGCTTCTGTGGTAAATATAAAGGCAAAAACTCATGAAAAGGTTGATAGCCTTGGAGAAAATAGAAGTATAGCAGCTCACACAGTTGTTCTTCTAATGAAGAAATGA

Protein sequence

>Msa0389890

MSSSSLTASSYSFPFTTPTKSSHPIPFSYSFPLKHHTLHLKSSPSLFVSASGAATPTASVEIDKSPISATPSKVLPFRVGHGFDLHRLEPGYPLIIGGINIPHDRGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGCDSSVFVHESVRLMHEAGYDIGNLDATLILQRPKLSPHKDAIKANLSALLGVDASVVNIKAKTHEKVDSLGENRSIAAHTVVLLMKK*