AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0389890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0389890 MtrunA17_Chr5g0397211 93.213 221 8 1 13 226 13 233 8.60e-147 408
Msa0389890 MtrunA17_Chr7g0234811 70.297 101 30 0 1 101 1 101 5.12e-41 136
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0389890 AT1G63970.1 79.191 173 29 1 61 226 59 231 9.86e-97 282
Msa0389890 AT1G63970.2 74.747 99 18 1 61 152 59 157 2.53e-47 154

Find 73 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTGGTTATCCTTTAATTAT+TGG 0.154047 3_2:-440669 Msa0389890:CDS
ATTCTAGTTGCAGTATATTT+TGG 0.206229 3_2:-437209 Msa0389890:three_prime_UTR
TTAATTCCACCAATAATTAA+AGG 0.221109 3_2:+440660 None:intergenic
TCACTGTTTGTTTCAGCTTC+AGG 0.284381 3_2:-440804 Msa0389890:CDS
TTGAGTAGATCATGTTATAT+TGG 0.285529 3_2:-437375 Msa0389890:three_prime_UTR
CGCTTCTGTGGTAAATATAA+AGG 0.303097 3_2:-437548 Msa0389890:CDS
AAAGAATAAGAGAATGGAAT+TGG 0.329681 3_2:+440867 None:intergenic
ACTAGAATGGTAGAAAATTC+TGG 0.334061 3_2:+437224 None:intergenic
AATGATCACAACAACCAAAA+TGG 0.346987 3_2:+437262 None:intergenic
CATGAGGCAGGTTATGATAT+TGG 0.350566 3_2:-437664 Msa0389890:CDS
ACAAAATCTTATAGATTGTC+CGG 0.378334 3_2:-437326 Msa0389890:three_prime_UTR
GCTTTAGGTCTTCCTGATAT+AGG 0.382227 3_2:-439628 Msa0389890:CDS
TTGAAGGAGTAGCGGAGATT+GGG 0.383157 3_2:+440742 None:intergenic
GAAGAAATGACAGTGGAATC+TGG 0.388485 3_2:-437452 Msa0389890:exon
TGGAATTGGGTGAGAAGATT+TGG 0.392377 3_2:+440881 None:intergenic
TCCTTGTGTGGGCTTAGTTT+CGG 0.392429 3_2:+437610 None:intergenic
TTTGAAGGAGTAGCGGAGAT+TGG 0.395299 3_2:+440741 None:intergenic
GATCACTTTGTTGGTTTAAA+CGG 0.416068 3_2:-437176 Msa0389890:three_prime_UTR
GTTAAAAGGGATCACTTTGT+TGG 0.430019 3_2:-437185 Msa0389890:three_prime_UTR
AAGAATAAGAGAATGGAATT+GGG 0.439995 3_2:+440868 None:intergenic
ATCGATTTCAACTGAGGCTG+TGG 0.440478 3_2:+440770 None:intergenic
GTGGAAGGGTTGTGATTCTT+CGG 0.447373 3_2:-439578 Msa0389890:CDS
GGTTATCCTTTAATTATTGG+TGG 0.460157 3_2:-440666 Msa0389890:CDS
AGAATATACTCACAGATTCA+TGG 0.463953 3_2:+439548 None:intergenic
CATGAAAAGGTTGATAGCCT+TGG 0.468863 3_2:-437517 Msa0389890:CDS
CCCACACAAGGATGCTATCA+AGG 0.475088 3_2:-437599 Msa0389890:CDS
AGAGGAAAAGAATAAGAGAA+TGG 0.478928 3_2:+440861 None:intergenic
AAACCATGGCCAACCCGAAA+AGG 0.483370 3_2:+440711 None:intergenic
GATTTGGTGGGTGTTGTGAA+TGG 0.484659 3_2:+440897 None:intergenic
GCCTTGATAGCATCCTTGTG+TGG 0.485497 3_2:+437598 None:intergenic
TCCAAGCAGTGCAGATAAGT+TGG 0.486196 3_2:+437576 None:intergenic
AAAATATACTGCAACTAGAA+TGG 0.495434 3_2:+437211 None:intergenic
TTCCACTTAGGATCAGAATC+AGG 0.496430 3_2:+439595 None:intergenic
ATTTGGTGGGTGTTGTGAAT+GGG 0.497158 3_2:+440898 None:intergenic
GACCTTCATCGATTGGAACC+TGG 0.499572 3_2:-440687 Msa0389890:CDS
CCTTGATAGCATCCTTGTGT+GGG 0.507271 3_2:+437599 None:intergenic
CGAAAAGGAAGAACCTTTGA+AGG 0.510185 3_2:+440726 None:intergenic
ATTAATATACCTCATGATAG+AGG 0.512773 3_2:-440642 Msa0389890:intron
GCCAACTTATCTGCACTGCT+TGG 0.513880 3_2:-437577 Msa0389890:CDS
CACTTTGTTGGTTTAAACGG+TGG 0.534203 3_2:-437173 Msa0389890:three_prime_UTR
TTCCTGATTCTGATCCTAAG+TGG 0.534340 3_2:-439597 Msa0389890:CDS
ATGATTTGAGATGGAGGGTA+TGG 0.536370 3_2:+440832 None:intergenic
TGGAATCTGGAAATATTATG+AGG 0.540881 3_2:-437439 Msa0389890:three_prime_UTR
GTCAGACTTATGCATGAGGC+AGG 0.542152 3_2:-437676 Msa0389890:CDS
TCGATTTCAACTGAGGCTGT+GGG 0.542972 3_2:+440771 None:intergenic
CCAATAATTAAAGGATAACC+AGG 0.547141 3_2:+440669 None:intergenic
GAATCACAACCCTTCCACTT+AGG 0.553850 3_2:+439583 None:intergenic
TGATTCTGATCCTAAGTGGA+AGG 0.553947 3_2:-439593 Msa0389890:CDS
AATCTCCGCTACTCCTTCAA+AGG 0.556988 3_2:-440739 Msa0389890:CDS
TAAAACAATGATTAGCAGCC+CGG 0.560681 3_2:+437307 None:intergenic
AACCAGGTTCCAATCGATGA+AGG 0.565616 3_2:+440685 None:intergenic
CAAAATCTTATAGATTGTCC+GGG 0.572319 3_2:-437325 Msa0389890:three_prime_UTR
GGATTTATCGATTTCAACTG+AGG 0.577148 3_2:+440764 None:intergenic
TGGAGGGTATGGTGTTTGAG+AGG 0.579851 3_2:+440843 None:intergenic
TGAAGGAGTAGCGGAGATTG+GGG 0.589337 3_2:+440743 None:intergenic
GGTGGGTGTTGTGAATGGGA+AGG 0.594415 3_2:+440902 None:intergenic
AATTGGGTGAGAAGATTTGG+TGG 0.594739 3_2:+440884 None:intergenic
ATTGGGTGAGAAGATTTGGT+GGG 0.596035 3_2:+440885 None:intergenic
GCTTGGAGTTGACGCTTCTG+TGG 0.600936 3_2:-437560 Msa0389890:CDS
GGATGTTCTGCTTCACTGCG+TGG 0.611052 3_2:-439668 Msa0389890:CDS
AAGAACCTTTGAAGGAGTAG+CGG 0.614741 3_2:+440734 None:intergenic
TGGTGATGATTTGAGATGGA+GGG 0.617114 3_2:+440827 None:intergenic
GCCGAAACTAAGCCCACACA+AGG 0.626457 3_2:-437611 Msa0389890:CDS
ATGCAACATTGATACTTCAG+AGG 0.627600 3_2:-437633 Msa0389890:CDS
GATTCTGATCCTAAGTGGAA+GGG 0.630398 3_2:-439592 Msa0389890:CDS
ATCGATGAAGGTCAAAACCA+TGG 0.631860 3_2:+440697 None:intergenic
GTGATGGTGATGATTTGAGA+TGG 0.635547 3_2:+440823 None:intergenic
ATGGTGATGATTTGAGATGG+AGG 0.646685 3_2:+440826 None:intergenic
GCCTCGCAACCTCTATCATG+AGG 0.647110 3_2:+440633 None:intergenic
TTCTAATGAAGAAATGACAG+TGG 0.656226 3_2:-437459 Msa0389890:exon
TGTTAGAGAAGATGAAGACA+TGG 0.663229 3_2:+440938 None:intergenic
GAAGCTGAAACAAACAGTGA+TGG 0.680351 3_2:+440807 None:intergenic
ACAGGTCAGACTTATGCATG+AGG 0.696663 3_2:-437680 Msa0389890:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGATTATAAAAATGAAAA+GGG + chr3_2:437526-437545 None:intergenic 10.0%
!! AAAAGATTATAAAAATGAAA+AGG + chr3_2:437527-437546 None:intergenic 10.0%
!! AAGATTATAAAAATGAAAAG+GGG + chr3_2:437525-437544 None:intergenic 15.0%
!! TTTGTAATTTCGAAATATTT+AGG - chr3_2:437748-437767 Msa0389890:intron 15.0%
!! TTGTAATTTCGAAATATTTA+GGG - chr3_2:437749-437768 Msa0389890:intron 15.0%
!! AATTTAGGGAATATATTAAT+AGG - chr3_2:438671-438690 Msa0389890:intron 15.0%
!!! ATTTTTCATTCTTCTAATTT+AGG - chr3_2:438959-438978 Msa0389890:intron 15.0%
!!! TTTTTCATTCTTCTAATTTA+GGG - chr3_2:438960-438979 Msa0389890:intron 15.0%
!! AAATTATTACTGAGTTAAAA+GGG - chr3_2:439050-439069 Msa0389890:intron 15.0%
!!! ATATGAGTAATTTTAATGAA+AGG + chr3_2:439362-439381 None:intergenic 15.0%
!!! TTTCCTTGTAAAAAAATTTT+TGG - chr3_2:439610-439629 Msa0389890:CDS 15.0%
!!! TTCCTTGTAAAAAAATTTTT+GGG - chr3_2:439611-439630 Msa0389890:CDS 15.0%
!!! TTCTTTTTTATGTAGATATA+TGG - chr3_2:439669-439688 Msa0389890:CDS 15.0%
!!! TCTTTTTTATGTAGATATAT+GGG - chr3_2:439670-439689 Msa0389890:CDS 15.0%
!! CAAAATTAATACAATAAAAG+AGG + chr3_2:440213-440232 None:intergenic 15.0%
!!! CTCTTTTATTGTATTAATTT+TGG - chr3_2:440211-440230 Msa0389890:intron 15.0%
!!! TATCTATACTTGATATTTTT+AGG - chr3_2:440368-440387 Msa0389890:intron 15.0%
!!! ATCTATACTTGATATTTTTA+GGG - chr3_2:440369-440388 Msa0389890:intron 15.0%
!!! ATATGTTATGATTTTATTAC+AGG - chr3_2:440401-440420 Msa0389890:intron 15.0%
!! TTAATTCCACCAATAATTAA+AGG + chr3_2:437442-437461 None:intergenic 20.0%
!! AATCAAAATGACTATTAACT+CGG + chr3_2:437560-437579 None:intergenic 20.0%
!! AATTGAGTAAATACTCAATT+TGG + chr3_2:438363-438382 None:intergenic 20.0%
!! AATTGAGAAAATAAAGTAGA+AGG + chr3_2:438590-438609 None:intergenic 20.0%
!! ATTGAAATACAGTATGATTT+AGG - chr3_2:438607-438626 Msa0389890:intron 20.0%
!!! TTCTAATGTTGTTTGAATTT+AGG - chr3_2:438656-438675 Msa0389890:intron 20.0%
!!! TCTAATGTTGTTTGAATTTA+GGG - chr3_2:438657-438676 Msa0389890:intron 20.0%
!! GAAATTATTACTGAGTTAAA+AGG - chr3_2:439049-439068 Msa0389890:intron 20.0%
!! ATATACCTTGTATGTATATA+AGG - chr3_2:439184-439203 Msa0389890:intron 20.0%
!! TATACCTTGTATGTATATAA+GGG - chr3_2:439185-439204 Msa0389890:intron 20.0%
!!! CTTTTTTGTTTGGTATAATA+CGG + chr3_2:439387-439406 None:intergenic 20.0%
!! AAACCAATCAGTTTAAATAT+GGG + chr3_2:439494-439513 None:intergenic 20.0%
!! ATATATGCCTGTTTAAATAA+GGG + chr3_2:439524-439543 None:intergenic 20.0%
!! AATATATGCCTGTTTAAATA+AGG + chr3_2:439525-439544 None:intergenic 20.0%
!!! TACCCAAAAATTTTTTTACA+AGG + chr3_2:439616-439635 None:intergenic 20.0%
!!! GTATCTGAATTGTTTAAAAT+AGG + chr3_2:439922-439941 None:intergenic 20.0%
!!! AAAAATAGCAAAGTTTTGTT+TGG + chr3_2:440129-440148 None:intergenic 20.0%
!! ATGGTTGTACAAATTATATT+TGG - chr3_2:440301-440320 Msa0389890:intron 20.0%
!!! AGTATATTTTGGTGTTAAAA+GGG - chr3_2:440901-440920 Msa0389890:CDS 20.0%
! AAGAATAAGAGAATGGAATT+GGG + chr3_2:437234-437253 None:intergenic 25.0%
! AAAGAATAAGAGAATGGAAT+TGG + chr3_2:437235-437254 None:intergenic 25.0%
! ATTAATATACCTCATGATAG+AGG - chr3_2:437457-437476 Msa0389890:exon 25.0%
!! GTTAGTTAGTGAATATTTTC+TGG - chr3_2:437674-437693 Msa0389890:CDS 25.0%
!!! GTAGTGTTTTGAAGATTATA+CGG - chr3_2:437887-437906 Msa0389890:intron 25.0%
! CTCAAAATTATTATCGACAT+CGG - chr3_2:438069-438088 Msa0389890:intron 25.0%
! CAAGATAGTTTATGAGAAAA+CGG + chr3_2:438230-438249 None:intergenic 25.0%
!!! TTTATTTTCATAAGCTGTTC+TGG - chr3_2:438280-438299 Msa0389890:intron 25.0%
! AAAAAATAAGCCAATCCAAA+TGG - chr3_2:438310-438329 Msa0389890:intron 25.0%
! AAAAATAAGCCAATCCAAAT+GGG - chr3_2:438311-438330 Msa0389890:intron 25.0%
!! ATGATGATGAAATATGAACA+GGG - chr3_2:438409-438428 Msa0389890:intron 25.0%
! ACAGAACAAACAAATCATTA+CGG + chr3_2:438711-438730 None:intergenic 25.0%
! CCATGAATAATTCATTGAAA+TGG + chr3_2:438748-438767 None:intergenic 25.0%
! CCATTTCAATGAATTATTCA+TGG - chr3_2:438745-438764 Msa0389890:intron 25.0%
! ACTTTATTATTGAACGAGTT+TGG - chr3_2:439003-439022 Msa0389890:intron 25.0%
! AAATAATGACATGAGTTAAC+AGG - chr3_2:439112-439131 Msa0389890:intron 25.0%
! ATACATACAAGGTATATGAT+TGG + chr3_2:439181-439200 None:intergenic 25.0%
!!! CTGTGTTCAGTTTTTTTAAA+GGG - chr3_2:439214-439233 Msa0389890:intron 25.0%
!!! TGTGTTCAGTTTTTTTAAAG+GGG - chr3_2:439215-439234 Msa0389890:intron 25.0%
!!! AAACATCTCTCTTTTTTGTT+TGG + chr3_2:439397-439416 None:intergenic 25.0%
! CAAACCAATCAGTTTAAATA+TGG + chr3_2:439495-439514 None:intergenic 25.0%
!!! GTGAATAAAAGCTTTTTCTT+CGG + chr3_2:439867-439886 None:intergenic 25.0%
! TTTAATAACTGCTAAACACA+TGG + chr3_2:440249-440268 None:intergenic 25.0%
! TTGAGTAGATCATGTTATAT+TGG - chr3_2:440724-440743 Msa0389890:CDS 25.0%
! ACAAAATCTTATAGATTGTC+CGG - chr3_2:440773-440792 Msa0389890:CDS 25.0%
!! GTCAAATTTTGTAACCATTT+TGG - chr3_2:440823-440842 Msa0389890:CDS 25.0%
! AAAATATACTGCAACTAGAA+TGG + chr3_2:440891-440910 None:intergenic 25.0%
!!! ATTCTAGTTGCAGTATATTT+TGG - chr3_2:440890-440909 Msa0389890:CDS 25.0%
!!! CAGTATATTTTGGTGTTAAA+AGG - chr3_2:440900-440919 Msa0389890:CDS 25.0%
AGAGGAAAAGAATAAGAGAA+TGG + chr3_2:437241-437260 None:intergenic 30.0%
CCAATAATTAAAGGATAACC+AGG + chr3_2:437433-437452 None:intergenic 30.0%
CCTGGTTATCCTTTAATTAT+TGG - chr3_2:437430-437449 Msa0389890:three_prime_UTR 30.0%
GGTTATCCTTTAATTATTGG+TGG - chr3_2:437433-437452 Msa0389890:three_prime_UTR 30.0%
TATAAAAATGAAAAGGGGCA+TGG + chr3_2:437520-437539 None:intergenic 30.0%
TCCATTGTAAGTTTGTGATT+AGG - chr3_2:437919-437938 Msa0389890:intron 30.0%
CCATTGTAAGTTTGTGATTA+GGG - chr3_2:437920-437939 Msa0389890:intron 30.0%
CATTGTAAGTTTGTGATTAG+GGG - chr3_2:437921-437940 Msa0389890:intron 30.0%
AATAAGCCAATCCAAACAAA+CGG + chr3_2:437947-437966 None:intergenic 30.0%
GGCTTATTTACTATGAAACA+CGG - chr3_2:437959-437978 Msa0389890:intron 30.0%
TCAATTTGGTATAGAGTTGT+TGG + chr3_2:438349-438368 None:intergenic 30.0%
! CATGATGATGAAATATGAAC+AGG - chr3_2:438408-438427 Msa0389890:intron 30.0%
! TGATGATGAAATATGAACAG+GGG - chr3_2:438410-438429 Msa0389890:intron 30.0%
AGAATATACTCACAGATTCA+TGG + chr3_2:438554-438573 None:intergenic 30.0%
CTGAAAACACAATTACACTA+AGG + chr3_2:438633-438652 None:intergenic 30.0%
AAATCATTACGGTGAACATT+TGG + chr3_2:438700-438719 None:intergenic 30.0%
ATGCAGTGTTAGAACTTAAA+TGG - chr3_2:438799-438818 Msa0389890:intron 30.0%
TGCTAAAGTATAAGCATGAT+AGG - chr3_2:438823-438842 Msa0389890:intron 30.0%
AAAGTATAAGCATGATAGGA+AGG - chr3_2:438827-438846 Msa0389890:intron 30.0%
TTCGGATTGTTAGAATAAGA+TGG - chr3_2:438896-438915 Msa0389890:intron 30.0%
TGAAAAATAGATGTAGCAGA+TGG + chr3_2:438947-438966 None:intergenic 30.0%
ATTACTGAGTTAAAAGGGTA+AGG - chr3_2:439055-439074 Msa0389890:intron 30.0%
GATTCCCTTATATACATACA+AGG + chr3_2:439192-439211 None:intergenic 30.0%
!!! GCTGTGTTCAGTTTTTTTAA+AGG - chr3_2:439213-439232 Msa0389890:intron 30.0%
!!! TTCAGTTTTTTTAAAGGGGA+CGG - chr3_2:439219-439238 Msa0389890:intron 30.0%
AACATTTCGTGTGGTATTTA+AGG + chr3_2:439309-439328 None:intergenic 30.0%
TACCACACGAAATGTTAAAA+TGG - chr3_2:439313-439332 Msa0389890:intron 30.0%
! GCATAATCCCTTATTTAAAC+AGG - chr3_2:439514-439533 Msa0389890:intron 30.0%
CATACATATGTGAGTTCAAA+AGG - chr3_2:439556-439575 Msa0389890:intron 30.0%
AGTAAAACATGCACATTAGT+AGG + chr3_2:439590-439609 None:intergenic 30.0%
TTCATCAAACCCATTTAATC+CGG - chr3_2:439709-439728 Msa0389890:intron 30.0%
TGTCACAAACTAACATACAT+AGG - chr3_2:439732-439751 Msa0389890:intron 30.0%
!! TGAACTCATTCTCTACTTTT+TGG + chr3_2:440007-440026 None:intergenic 30.0%
AAAAGTAGAGAATGAGTTCA+AGG - chr3_2:440007-440026 Msa0389890:intron 30.0%
! GATTTTCTTTTGACGTATGA+TGG - chr3_2:440282-440301 Msa0389890:intron 30.0%
!!! GTTACTGAAAGTGTTTTCTT+AGG - chr3_2:440323-440342 Msa0389890:intron 30.0%
AAAGGCAAAAACTCATGAAA+AGG - chr3_2:440569-440588 Msa0389890:intron 30.0%
! CTATACTTCTATTTTCTCCA+AGG + chr3_2:440602-440621 None:intergenic 30.0%
TTCTAATGAAGAAATGACAG+TGG - chr3_2:440640-440659 Msa0389890:intron 30.0%
TGGAATCTGGAAATATTATG+AGG - chr3_2:440660-440679 Msa0389890:CDS 30.0%
CAAAATCTTATAGATTGTCC+GGG - chr3_2:440774-440793 Msa0389890:CDS 30.0%
AATGATCACAACAACCAAAA+TGG + chr3_2:440840-440859 None:intergenic 30.0%
ACTAGAATGGTAGAAAATTC+TGG + chr3_2:440878-440897 None:intergenic 30.0%
!! GATCACTTTGTTGGTTTAAA+CGG - chr3_2:440923-440942 Msa0389890:CDS 30.0%
!! GGATTTATCGATTTCAACTG+AGG + chr3_2:437338-437357 None:intergenic 35.0%
! CTTCAAAGGTTCTTCCTTTT+CGG - chr3_2:437374-437393 Msa0389890:three_prime_UTR 35.0%
! TTCAAAGGTTCTTCCTTTTC+GGG - chr3_2:437375-437394 Msa0389890:three_prime_UTR 35.0%
ATAAGTTAGTTGACAGTGGA+TGG - chr3_2:437809-437828 Msa0389890:intron 35.0%
CCCTAATCACAAACTTACAA+TGG + chr3_2:437923-437942 None:intergenic 35.0%
ATGAAGCACAAACATAGACA+CGG + chr3_2:438110-438129 None:intergenic 35.0%
GGAAAAATCTGTCCTATATC+AGG + chr3_2:438486-438505 None:intergenic 35.0%
GGAAAGACATTGTCATTGTT+CGG - chr3_2:438878-438897 Msa0389890:intron 35.0%
! TTCTTCTAATTTAGGGTGCA+TGG - chr3_2:438967-438986 Msa0389890:intron 35.0%
!!! TCAGTTTTTTTAAAGGGGAC+GGG - chr3_2:439220-439239 Msa0389890:intron 35.0%
!! CACCATTTTAACATTTCGTG+TGG + chr3_2:439318-439337 None:intergenic 35.0%
AGGCCCATATTTAAACTGAT+TGG - chr3_2:439488-439507 Msa0389890:intron 35.0%
TTTGTGACACCGGATTAAAT+GGG + chr3_2:439721-439740 None:intergenic 35.0%
!! TGTATGTTAGTTTGTGACAC+CGG + chr3_2:439731-439750 None:intergenic 35.0%
CTAACATACATAGGATCACA+AGG - chr3_2:439741-439760 Msa0389890:intron 35.0%
ACAAGGTCAGCTATTTAACT+GGG - chr3_2:439758-439777 Msa0389890:intron 35.0%
TGTATCATGTGTGTATGTTG+AGG + chr3_2:439827-439846 None:intergenic 35.0%
CTTCGGAAATGACATATTTG+AGG + chr3_2:439850-439869 None:intergenic 35.0%
TCTCACTTCTGAATACTGTT+AGG + chr3_2:440055-440074 None:intergenic 35.0%
TATCAGTCAAGTGTGTAACA+GGG - chr3_2:440083-440102 Msa0389890:intron 35.0%
ATAAAAGAGGAGTCACTGTT+AGG + chr3_2:440200-440219 None:intergenic 35.0%
CTAAACACATGGTAAATGCA+GGG + chr3_2:440238-440257 None:intergenic 35.0%
ATGCAACATTGATACTTCAG+AGG - chr3_2:440466-440485 Msa0389890:intron 35.0%
CGCTTCTGTGGTAAATATAA+AGG - chr3_2:440551-440570 Msa0389890:intron 35.0%
TAAAACAATGATTAGCAGCC+CGG + chr3_2:440795-440814 None:intergenic 35.0%
GTTAAAAGGGATCACTTTGT+TGG - chr3_2:440914-440933 Msa0389890:CDS 35.0%
! ATTTGGTGGGTGTTGTGAAT+GGG + chr3_2:437204-437223 None:intergenic 40.0%
! ATTGGGTGAGAAGATTTGGT+GGG + chr3_2:437217-437236 None:intergenic 40.0%
AATTGGGTGAGAAGATTTGG+TGG + chr3_2:437218-437237 None:intergenic 40.0%
TGGAATTGGGTGAGAAGATT+TGG + chr3_2:437221-437240 None:intergenic 40.0%
! ATGATTTGAGATGGAGGGTA+TGG + chr3_2:437270-437289 None:intergenic 40.0%
! TGGTGATGATTTGAGATGGA+GGG + chr3_2:437275-437294 None:intergenic 40.0%
! ATGGTGATGATTTGAGATGG+AGG + chr3_2:437276-437295 None:intergenic 40.0%
! GTGATGGTGATGATTTGAGA+TGG + chr3_2:437279-437298 None:intergenic 40.0%
GAAGCTGAAACAAACAGTGA+TGG + chr3_2:437295-437314 None:intergenic 40.0%
TCACTGTTTGTTTCAGCTTC+AGG - chr3_2:437295-437314 Msa0389890:three_prime_UTR 40.0%
! AAGAACCTTTGAAGGAGTAG+CGG + chr3_2:437368-437387 None:intergenic 40.0%
CGAAAAGGAAGAACCTTTGA+AGG + chr3_2:437376-437395 None:intergenic 40.0%
ATCGATGAAGGTCAAAACCA+TGG + chr3_2:437405-437424 None:intergenic 40.0%
!!! TGGTTTTGACCTTCATCGAT+TGG - chr3_2:437405-437424 Msa0389890:three_prime_UTR 40.0%
TTAGGGACTATGACTCTGTT+TGG - chr3_2:437766-437785 Msa0389890:intron 40.0%
CTCTGTTTGGTAGAAAGTAG+TGG - chr3_2:437779-437798 Msa0389890:intron 40.0%
!! TGGTAGAAAGTAGTGGATAG+TGG - chr3_2:437786-437805 Msa0389890:intron 40.0%
GTGGATAAGTTAGTTGACAG+TGG - chr3_2:437805-437824 Msa0389890:intron 40.0%
TCCACAAATTAGGTGTGTTC+CGG - chr3_2:437986-438005 Msa0389890:intron 40.0%
GTAATCATATGTGCCAGTGT+AGG + chr3_2:438031-438050 None:intergenic 40.0%
AGAGTTGTTGGCAAGATCTT+GGG + chr3_2:438337-438356 None:intergenic 40.0%
TAGAGTTGTTGGCAAGATCT+TGG + chr3_2:438338-438357 None:intergenic 40.0%
!! TGCGTGGTTGATGCAATTTT+AGG - chr3_2:438447-438466 Msa0389890:intron 40.0%
!! GCGTGGTTGATGCAATTTTA+GGG - chr3_2:438448-438467 Msa0389890:intron 40.0%
!! CGTGGTTGATGCAATTTTAG+GGG - chr3_2:438449-438468 Msa0389890:intron 40.0%
!! GATGCAATTTTAGGGGCTTT+AGG - chr3_2:438456-438475 Msa0389890:intron 40.0%
! GCTTTAGGTCTTCCTGATAT+AGG - chr3_2:438471-438490 Msa0389890:intron 40.0%
TTCCTGATTCTGATCCTAAG+TGG - chr3_2:438502-438521 Msa0389890:intron 40.0%
TTCCACTTAGGATCAGAATC+AGG + chr3_2:438507-438526 None:intergenic 40.0%
TGATTCTGATCCTAAGTGGA+AGG - chr3_2:438506-438525 Msa0389890:intron 40.0%
GATTCTGATCCTAAGTGGAA+GGG - chr3_2:438507-438526 Msa0389890:intron 40.0%
CTTAGAAGAGATTAGCGCTT+TGG - chr3_2:439079-439098 Msa0389890:intron 40.0%
ATTAGCGCTTTGGTTAACAG+TGG - chr3_2:439089-439108 Msa0389890:intron 40.0%
! TCTATTCGGTTCTAACTGAG+GGG + chr3_2:439425-439444 None:intergenic 40.0%
! GTCTATTCGGTTCTAACTGA+GGG + chr3_2:439426-439445 None:intergenic 40.0%
CATATGTGAGTTCAAAAGGC+CGG - chr3_2:439560-439579 Msa0389890:intron 40.0%
GTTTGTGACACCGGATTAAA+TGG + chr3_2:439722-439741 None:intergenic 40.0%
CACAAGGTCAGCTATTTAAC+TGG - chr3_2:439757-439776 Msa0389890:intron 40.0%
GTATGTTGAGGTGAGTACAA+GGG + chr3_2:439815-439834 None:intergenic 40.0%
TGTATGTTGAGGTGAGTACA+AGG + chr3_2:439816-439835 None:intergenic 40.0%
CTATCAGTCAAGTGTGTAAC+AGG - chr3_2:440082-440101 Msa0389890:intron 40.0%
GCTAAACACATGGTAAATGC+AGG + chr3_2:440239-440258 None:intergenic 40.0%
CATGAGGCAGGTTATGATAT+TGG - chr3_2:440435-440454 Msa0389890:intron 40.0%
!! CATGAAAAGGTTGATAGCCT+TGG - chr3_2:440582-440601 Msa0389890:intron 40.0%
GAAGAAATGACAGTGGAATC+TGG - chr3_2:440647-440666 Msa0389890:CDS 40.0%
!! CACTTTGTTGGTTTAAACGG+TGG - chr3_2:440926-440945 Msa0389890:CDS 40.0%
!! GATTTGGTGGGTGTTGTGAA+TGG + chr3_2:437205-437224 None:intergenic 45.0%
TCGATTTCAACTGAGGCTGT+GGG + chr3_2:437331-437350 None:intergenic 45.0%
! ATCGATTTCAACTGAGGCTG+TGG + chr3_2:437332-437351 None:intergenic 45.0%
! TTGAAGGAGTAGCGGAGATT+GGG + chr3_2:437360-437379 None:intergenic 45.0%
! TTTGAAGGAGTAGCGGAGAT+TGG + chr3_2:437361-437380 None:intergenic 45.0%
AATCTCCGCTACTCCTTCAA+AGG - chr3_2:437360-437379 Msa0389890:three_prime_UTR 45.0%
!!! AAGGTTCTTCCTTTTCGGGT+TGG - chr3_2:437379-437398 Msa0389890:three_prime_UTR 45.0%
AACCAGGTTCCAATCGATGA+AGG + chr3_2:437417-437436 None:intergenic 45.0%
GCAGATAAGCTAGCTGATAG+TGG - chr3_2:437839-437858 Msa0389890:intron 45.0%
ACACGGACACTCCACAAATT+AGG - chr3_2:437976-437995 Msa0389890:intron 45.0%
ACCGGAACACACCTAATTTG+TGG + chr3_2:437990-438009 None:intergenic 45.0%
ACAAACATAGACACGGACAC+GGG + chr3_2:438103-438122 None:intergenic 45.0%
CACAAACATAGACACGGACA+CGG + chr3_2:438104-438123 None:intergenic 45.0%
GAATCACAACCCTTCCACTT+AGG + chr3_2:438519-438538 None:intergenic 45.0%
GTGGAAGGGTTGTGATTCTT+CGG - chr3_2:438521-438540 Msa0389890:intron 45.0%
! GAAGGTATGCCTTGCAATCA+GGG - chr3_2:438845-438864 Msa0389890:intron 45.0%
! GGTCTATTCGGTTCTAACTG+AGG + chr3_2:439427-439446 None:intergenic 45.0%
AGAACCGAATAGACCTGTAG+AGG - chr3_2:439432-439451 Msa0389890:intron 45.0%
AAATATGGGCCTATGCTGAC+TGG + chr3_2:439480-439499 None:intergenic 45.0%
ATGCACATTAGTAGGCAGAC+CGG + chr3_2:439582-439601 None:intergenic 45.0%
ACAAGGGCTAACGGTTGTTT+GGG + chr3_2:439799-439818 None:intergenic 45.0%
TACAAGGGCTAACGGTTGTT+TGG + chr3_2:439800-439819 None:intergenic 45.0%
ACAGGTCAGACTTATGCATG+AGG - chr3_2:440419-440438 Msa0389890:intron 45.0%
TCCTTGTGTGGGCTTAGTTT+CGG + chr3_2:440492-440511 None:intergenic 45.0%
! CCTTGATAGCATCCTTGTGT+GGG + chr3_2:440503-440522 None:intergenic 45.0%
TCCAAGCAGTGCAGATAAGT+TGG + chr3_2:440526-440545 None:intergenic 45.0%
! TGGAGGGTATGGTGTTTGAG+AGG + chr3_2:437259-437278 None:intergenic 50.0%
! TGAAGGAGTAGCGGAGATTG+GGG + chr3_2:437359-437378 None:intergenic 50.0%
AAACCATGGCCAACCCGAAA+AGG + chr3_2:437391-437410 None:intergenic 50.0%
! GACCTTCATCGATTGGAACC+TGG - chr3_2:437412-437431 Msa0389890:three_prime_UTR 50.0%
ACCTCATGATAGAGGTTGCG+AGG - chr3_2:437465-437484 Msa0389890:CDS 50.0%
GTGATTAGGGGCCGTTTGTT+TGG - chr3_2:437933-437952 Msa0389890:intron 50.0%
TAGGGGCCGTTTGTTTGGAT+TGG - chr3_2:437938-437957 Msa0389890:intron 50.0%
GATCTTGGGCCCATTTGGAT+TGG + chr3_2:438323-438342 None:intergenic 50.0%
! GGAAGGTATGCCTTGCAATC+AGG - chr3_2:438844-438863 Msa0389890:intron 50.0%
TTCCACTGTCCCTGATTGCA+AGG + chr3_2:438857-438876 None:intergenic 50.0%
TGCAATCAGGGACAGTGGAA+TGG - chr3_2:438857-438876 Msa0389890:intron 50.0%
ACCGAATAGACCTGTAGAGG+CGG - chr3_2:439435-439454 Msa0389890:intron 50.0%
GAGGTGAGTACAAGGGCTAA+CGG + chr3_2:439808-439827 None:intergenic 50.0%
GTCAGACTTATGCATGAGGC+AGG - chr3_2:440423-440442 Msa0389890:intron 50.0%
CCCACACAAGGATGCTATCA+AGG - chr3_2:440500-440519 Msa0389890:intron 50.0%
! GCCTTGATAGCATCCTTGTG+TGG + chr3_2:440504-440523 None:intergenic 50.0%
GCCAACTTATCTGCACTGCT+TGG - chr3_2:440522-440541 Msa0389890:intron 50.0%
! GGTGGGTGTTGTGAATGGGA+AGG + chr3_2:437200-437219 None:intergenic 55.0%
!!! CTTCCTTTTCGGGTTGGCCA+TGG - chr3_2:437385-437404 Msa0389890:three_prime_UTR 55.0%
GCCTCGCAACCTCTATCATG+AGG + chr3_2:437469-437488 None:intergenic 55.0%
GGTTGCGAGGCTCATTCTGA+TGG - chr3_2:437478-437497 Msa0389890:CDS 55.0%
AAGCGAAGCGTGTTCGACAC+CGG + chr3_2:438008-438027 None:intergenic 55.0%
ACACGCTTCGCTTCCTACAC+TGG - chr3_2:438015-438034 Msa0389890:intron 55.0%
GGCAAGATCTTGGGCCCATT+TGG + chr3_2:438328-438347 None:intergenic 55.0%
GGATGTTCTGCTTCACTGCG+TGG - chr3_2:438431-438450 Msa0389890:intron 55.0%
TGCCTTGCAATCAGGGACAG+TGG - chr3_2:438852-438871 Msa0389890:intron 55.0%
TAAAGGGGACGGGAGAAGAG+AGG - chr3_2:439230-439249 Msa0389890:intron 55.0%
CCCGCCTCTACAGGTCTATT+CGG + chr3_2:439439-439458 None:intergenic 55.0%
CCGAATAGACCTGTAGAGGC+GGG - chr3_2:439436-439455 Msa0389890:intron 55.0%
GTATGCATACCCGCCTCTAC+AGG + chr3_2:439448-439467 None:intergenic 55.0%
GCCGAAACTAAGCCCACACA+AGG - chr3_2:440488-440507 Msa0389890:intron 55.0%
GCTTGGAGTTGACGCTTCTG+TGG - chr3_2:440539-440558 Msa0389890:intron 55.0%
! CTATGCTGACTGGTGCGAGC+TGG + chr3_2:439470-439489 None:intergenic 60.0%
CAGCTCGCACCAGTCAGCAT+AGG - chr3_2:439468-439487 Msa0389890:intron 60.0%
GGGGACGGGAGAAGAGAGGA+AGG - chr3_2:439234-439253 Msa0389890:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 437163 440958 437163 ID=Msa0389890;Name=Msa0389890
chr3_2 mRNA 437163 440958 437163 ID=Msa0389890-mRNA-1;Parent=Msa0389890;Name=Msa0389890-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0.5|0.66|1|1|1|3|302|226
chr3_2 exon 437163 437698 437163 ID=Msa0389890-mRNA-1:exon:61;Parent=Msa0389890-mRNA-1
chr3_2 exon 439561 439691 439561 ID=Msa0389890-mRNA-1:exon:60;Parent=Msa0389890-mRNA-1
chr3_2 exon 440643 440958 440643 ID=Msa0389890-mRNA-1:exon:59;Parent=Msa0389890-mRNA-1
chr3_2 CDS 440643 440958 440643 ID=Msa0389890-mRNA-1:cds;Parent=Msa0389890-mRNA-1
chr3_2 CDS 439561 439691 439561 ID=Msa0389890-mRNA-1:cds;Parent=Msa0389890-mRNA-1
chr3_2 CDS 437465 437698 437465 ID=Msa0389890-mRNA-1:cds;Parent=Msa0389890-mRNA-1
chr3_2 three_prime_UTR 437163 437464 437163 ID=Msa0389890-mRNA-1:three_prime_utr;Parent=Msa0389890-mRNA-1
Gene Sequence

>Msa0389890

ATGTCTTCATCTTCTCTAACAGCTTCTTCTTACTCCTTCCCATTCACAACACCCACCAAATCTTCTCACCCAATTCCATTCTCTTATTCTTTTCCTCTCAAACACCATACCCTCCATCTCAAATCATCACCATCACTGTTTGTTTCAGCTTCAGGAGCTGCAACACCCACAGCCTCAGTTGAAATCGATAAATCCCCAATCTCCGCTACTCCTTCAAAGGTTCTTCCTTTTCGGGTTGGCCATGGTTTTGACCTTCATCGATTGGAACCTGGTTATCCTTTAATTATTGGTGGAATTAATATACCTCATGATAGAGGGGATGTTCTGCTTCACTGCGTGGTTGATGCAATTTTAGGGGCTTTAGGTCTTCCTGATATAGGACAGATTTTTCCTGATTCTGATCCTAAGTGGAAGGGTTGTGATTCTTCGGTGTTTGTCCATGAATCTGTCAGACTTATGCATGAGGCAGGTTATGATATTGGAAATTTAGATGCAACATTGATACTTCAGAGGCCGAAACTAAGCCCACACAAGGATGCTATCAAGGCCAACTTATCTGCACTGCTTGGAGTTGACGCTTCTGTGGTAAATATAAAGGCAAAAACTCATGAAAAGGTTGATAGCCTTGGAGAAAATAGAAGTATAGCAGCTCACACAGTTGTTCTTCTAATGAAGAAATGA

Protein sequence

>Msa0389890

MSSSSLTASSYSFPFTTPTKSSHPIPFSYSFPLKHHTLHLKSSPSLFVSASGAATPTASVEIDKSPISATPSKVLPFRVGHGFDLHRLEPGYPLIIGGINIPHDRGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGCDSSVFVHESVRLMHEAGYDIGNLDATLILQRPKLSPHKDAIKANLSALLGVDASVVNIKAKTHEKVDSLGENRSIAAHTVVLLMKK*