AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1161060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1161060 MtrunA17_Chr7g0255661 94.757 267 3 2 1 264 1 259 0.0 503
Msa1161060 MtrunA17_Chr3g0125881 31.707 164 91 6 105 264 121 267 1.23e-19 85.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1161060 AT3G56650.1 74.380 242 60 2 25 264 21 262 3.36e-129 367
Msa1161060 AT1G77090.1 31.098 164 92 6 105 264 113 259 4.87e-19 84.3

Find 71 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGTTCAATGTTGATTATTT+TGG 0.162129 7_4:+51215160 None:intergenic
ACCCATGGCTCTGCACATTT+TGG 0.188022 7_4:+51214620 None:intergenic
CCCTTCAAGAATTCTCTTCT+TGG 0.220023 7_4:+51214966 None:intergenic
AACAGAAAACTAAACTTTAA+AGG 0.234300 7_4:+51213529 None:intergenic
GTGGTTTGGAAGTGAGTTTC+AGG 0.256242 7_4:+51214990 None:intergenic
TCCGAAGCTGTTTCCATGTT+GGG 0.295637 7_4:+51214675 None:intergenic
TCCACTGATCAATCAGAAAA+TGG 0.298697 7_4:-51215114 Msa1161060:exon
GAAACTCCATATGCTCTTAC+TGG 0.304540 7_4:-51213668 Msa1161060:CDS
ATCTGGATCTAAAGTGTTTC+CGG 0.321003 7_4:+51214454 None:intergenic
AATTGTTGCATTTGGTTTGT+TGG 0.333981 7_4:+51214529 None:intergenic
CGAAGGGCAGGAGTATCTTT+AGG 0.356398 7_4:+51214816 None:intergenic
GAAGCCTCGAGGAGCTCATC+TGG 0.366026 7_4:+51214437 None:intergenic
ATGTCCTCAATTGTTGCATT+TGG 0.371030 7_4:+51214521 None:intergenic
ATTCTCTTCTTGGTGTGGTT+TGG 0.373251 7_4:+51214976 None:intergenic
TTGCATTTGGTTTGTTGGTT+AGG 0.381877 7_4:+51214534 None:intergenic
CGGATAGCTAACATACTATC+AGG 0.410990 7_4:-51214656 Msa1161060:CDS
TTATTAAGCAAGAGTTGTAT+TGG 0.420021 7_4:-51213441 Msa1161060:three_prime_UTR
AGTTTGCCACTGCTTGTCAT+TGG 0.423778 7_4:+51213583 None:intergenic
TGTGAACCAGTAAGAGCATA+TGG 0.439225 7_4:+51213662 None:intergenic
CAAGAATTCTCTTCTTGGTG+TGG 0.449220 7_4:+51214971 None:intergenic
ATGTAGTAGTGAATGGGAAA+AGG 0.453597 7_4:+51215072 None:intergenic
ATCCGAAGCTGTTTCCATGT+TGG 0.463719 7_4:+51214674 None:intergenic
AAAGTGTTTCCGGTGACAAA+TGG 0.467671 7_4:+51214464 None:intergenic
TGTAGTAGTGAATGGGAAAA+GGG 0.469906 7_4:+51215073 None:intergenic
ATGCAACAATTGAGGACATC+GGG 0.486193 7_4:-51214517 Msa1161060:CDS
AATGGGAAAAGGGAGGTGAA+TGG 0.486278 7_4:+51215083 None:intergenic
CCCCAACATGGAAACAGCTT+CGG 0.500004 7_4:-51214676 Msa1161060:CDS
CTTGCAAAAGCAACAGCAAA+GGG 0.514105 7_4:-51213635 Msa1161060:CDS
ACCAAAATGTGCAGAGCCAT+GGG 0.517062 7_4:-51214621 Msa1161060:CDS
GAATGGGATGTAGTAGTGAA+TGG 0.520955 7_4:+51215065 None:intergenic
GCTTTGAAGAGAACAAAAGA+AGG 0.522695 7_4:+51214843 None:intergenic
AAGGGTCTGATGATGAAGGA+GGG 0.525805 7_4:+51214862 None:intergenic
GAAGGGTCTGATGATGAAGG+AGG 0.526348 7_4:+51214861 None:intergenic
AACCAAAATGTGCAGAGCCA+TGG 0.527719 7_4:-51214622 Msa1161060:CDS
CCGAAGCTGTTTCCATGTTG+GGG 0.529262 7_4:+51214676 None:intergenic
GATACTCCTGCCCTTCGTGC+TGG 0.532133 7_4:-51214810 Msa1161060:intron
CAAACCAAATGCAACAATTG+AGG 0.532140 7_4:-51214525 Msa1161060:CDS
AATGTACCAGCACGAAGGGC+AGG 0.538174 7_4:+51214804 None:intergenic
CAAGCTAGAGAAGTTTCAGT+TGG 0.540850 7_4:-51214894 Msa1161060:CDS
TGGAATGTGTGAAGGAAGGA+AGG 0.543339 7_4:+51215133 None:intergenic
ATGTGCAGAGCCATGGGTCG+AGG 0.546349 7_4:-51214615 Msa1161060:CDS
ACCAAGAAGAGAATTCTTGA+AGG 0.551179 7_4:-51214967 Msa1161060:CDS
GAAATGGTGAGAGCTTTGAA+TGG 0.552256 7_4:+51215048 None:intergenic
TCTCTCGGTCCATTTGTCAC+CGG 0.560247 7_4:-51214473 Msa1161060:CDS
TCAAATTTAACCTCGACCCA+TGG 0.563391 7_4:+51214605 None:intergenic
AATGGGATGTAGTAGTGAAT+GGG 0.565263 7_4:+51215066 None:intergenic
TCTTGCAAAAGCAACAGCAA+AGG 0.565478 7_4:-51213636 Msa1161060:CDS
TTGTTGGTTAGGCGTATCAA+AGG 0.567096 7_4:+51214545 None:intergenic
AAAGAAGGGTCTGATGATGA+AGG 0.589629 7_4:+51214858 None:intergenic
ACTTCTCTAGCTTGTGACTG+TGG 0.595522 7_4:+51214903 None:intergenic
AAATGGTGAGAGCTTTGAAT+GGG 0.595936 7_4:+51215049 None:intergenic
AATCAATGTACCAGCACGAA+GGG 0.598231 7_4:+51214800 None:intergenic
AACTTTAAAGGAATCAAGCA+TGG 0.601558 7_4:+51213541 None:intergenic
CGAAGCTGTTTCCATGTTGG+GGG 0.605438 7_4:+51214677 None:intergenic
AGGAACTGAGACAGAAGCAG+AGG 0.618479 7_4:+51215010 None:intergenic
GAAAAGCTTATCGCTTCTCT+CGG 0.619390 7_4:-51214488 Msa1161060:CDS
GGTCTGATGATGAAGGAGGG+AGG 0.623445 7_4:+51214865 None:intergenic
TCAGTGGAATGTGTGAAGGA+AGG 0.624428 7_4:+51215129 None:intergenic
AATGCAACAATTGAGGACAT+CGG 0.624867 7_4:-51214518 Msa1161060:CDS
TGAAAAGATTGATGATCAGA+CGG 0.625680 7_4:-51214411 Msa1161060:intron
CCAAGAAGAGAATTCTTGAA+GGG 0.629087 7_4:-51214966 Msa1161060:CDS
GGAATGTGTGAAGGAAGGAA+GGG 0.630465 7_4:+51215134 None:intergenic
CTTTGAAGAGAACAAAAGAA+GGG 0.632727 7_4:+51214844 None:intergenic
CTAGTGCCAATGACAAGCAG+TGG 0.640793 7_4:-51213589 Msa1161060:CDS
TCTCTAGCTTGTGACTGTGG+TGG 0.645818 7_4:+51214906 None:intergenic
AGTAGTGAATGGGAAAAGGG+AGG 0.650023 7_4:+51215076 None:intergenic
GGCTCTGTGAGAGCAATAAG+TGG 0.659641 7_4:+51214927 None:intergenic
CAATCAATGTACCAGCACGA+AGG 0.662156 7_4:+51214799 None:intergenic
TTGATCAGTGGAATGTGTGA+AGG 0.681598 7_4:+51215125 None:intergenic
TGTGAAGGAAGGAAGGGACA+AGG 0.686340 7_4:+51215140 None:intergenic
AGATCCAGATGAGCTCCTCG+AGG 0.689017 7_4:-51214441 Msa1161060:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTTGAAGATGAAAAACA+AGG - chr7_4:51213831-51213850 Msa1161060:intron 20.0%
!! AGTGGTATTATTATAGAAAA+TGG - chr7_4:51214132-51214151 Msa1161060:intron 20.0%
!! GTGGTATTATTATAGAAAAT+GGG - chr7_4:51214133-51214152 Msa1161060:intron 20.0%
!!! TATATATCTGAAACTATGAT+AGG + chr7_4:51214173-51214192 None:intergenic 20.0%
!! AAAACTTAGTTCAGATATAA+CGG - chr7_4:51214496-51214515 Msa1161060:CDS 20.0%
!! AACAGAAAACTAAACTTTAA+AGG + chr7_4:51214895-51214914 None:intergenic 20.0%
!!! GTTTAGTTTTCTGTTATTAA+AGG - chr7_4:51214900-51214919 Msa1161060:CDS 20.0%
!! TGTATAAACAAAAAACTACA+AGG + chr7_4:51214957-51214976 None:intergenic 20.0%
!!! TTGTAGTTTTTTGTTTATAC+AGG - chr7_4:51214956-51214975 Msa1161060:CDS 20.0%
!! AGATCAAAAAAATTCAAATG+GGG + chr7_4:51215007-51215026 None:intergenic 20.0%
!! CAGATCAAAAAAATTCAAAT+GGG + chr7_4:51215008-51215027 None:intergenic 20.0%
!! TCAGATCAAAAAAATTCAAA+TGG + chr7_4:51215009-51215028 None:intergenic 20.0%
!!! TCTACTTTTTTTTGTGATAT+TGG + chr7_4:51215137-51215156 None:intergenic 20.0%
!! AAATTTGAAGATGAAAAACA+AGG - chr7_4:51213831-51213850 Msa1161060:intron 20.0%
!! AGTGGTATTATTATAGAAAA+TGG - chr7_4:51214132-51214151 Msa1161060:intron 20.0%
!! GTGGTATTATTATAGAAAAT+GGG - chr7_4:51214133-51214152 Msa1161060:intron 20.0%
!!! TATATATCTGAAACTATGAT+AGG + chr7_4:51214173-51214192 None:intergenic 20.0%
!! AAAACTTAGTTCAGATATAA+CGG - chr7_4:51214496-51214515 Msa1161060:CDS 20.0%
!! AACAGAAAACTAAACTTTAA+AGG + chr7_4:51214895-51214914 None:intergenic 20.0%
!!! GTTTAGTTTTCTGTTATTAA+AGG - chr7_4:51214900-51214919 Msa1161060:CDS 20.0%
!! TGTATAAACAAAAAACTACA+AGG + chr7_4:51214957-51214976 None:intergenic 20.0%
!!! TTGTAGTTTTTTGTTTATAC+AGG - chr7_4:51214956-51214975 Msa1161060:CDS 20.0%
!! AGATCAAAAAAATTCAAATG+GGG + chr7_4:51215007-51215026 None:intergenic 20.0%
!! CAGATCAAAAAAATTCAAAT+GGG + chr7_4:51215008-51215027 None:intergenic 20.0%
!! TCAGATCAAAAAAATTCAAA+TGG + chr7_4:51215009-51215028 None:intergenic 20.0%
!!! TCTACTTTTTTTTGTGATAT+TGG + chr7_4:51215137-51215156 None:intergenic 20.0%
!! ATCACATCATATTTTCACAA+TGG - chr7_4:51213222-51213241 Msa1161060:three_prime_UTR 25.0%
!! TCATATTTTCACAATGGATA+AGG - chr7_4:51213228-51213247 Msa1161060:three_prime_UTR 25.0%
!!! AGGTTCAATGTTGATTATTT+TGG + chr7_4:51213264-51213283 None:intergenic 25.0%
! TGAAAAACAAGGAAAAATTC+AGG - chr7_4:51213842-51213861 Msa1161060:intron 25.0%
! ATGTAATTGTTATCTGTTGT+TGG - chr7_4:51214671-51214690 Msa1161060:CDS 25.0%
! TTATTAAGCAAGAGTTGTAT+TGG - chr7_4:51214980-51214999 Msa1161060:CDS 25.0%
!! ATCACATCATATTTTCACAA+TGG - chr7_4:51213222-51213241 Msa1161060:three_prime_UTR 25.0%
!! TCATATTTTCACAATGGATA+AGG - chr7_4:51213228-51213247 Msa1161060:three_prime_UTR 25.0%
!!! AGGTTCAATGTTGATTATTT+TGG + chr7_4:51213264-51213283 None:intergenic 25.0%
! TGAAAAACAAGGAAAAATTC+AGG - chr7_4:51213842-51213861 Msa1161060:intron 25.0%
! ATGTAATTGTTATCTGTTGT+TGG - chr7_4:51214671-51214690 Msa1161060:CDS 25.0%
! TTATTAAGCAAGAGTTGTAT+TGG - chr7_4:51214980-51214999 Msa1161060:CDS 25.0%
! CTTTGAAGAGAACAAAAGAA+GGG + chr7_4:51213580-51213599 None:intergenic 30.0%
!! AATTGTTGCATTTGGTTTGT+TGG + chr7_4:51213895-51213914 None:intergenic 30.0%
! TGAAAAGATTGATGATCAGA+CGG - chr7_4:51214010-51214029 Msa1161060:intron 30.0%
ATAGTCTGATAGAAATCAAG+TGG - chr7_4:51214114-51214133 Msa1161060:intron 30.0%
! TCGTTGAATATGATTAGCTA+TGG - chr7_4:51214313-51214332 Msa1161060:intron 30.0%
GGTAAACTTGTAAATTAGGA+GGG + chr7_4:51214529-51214548 None:intergenic 30.0%
GATTCATATTCGCTAATAAG+TGG + chr7_4:51214598-51214617 None:intergenic 30.0%
! TTACATTTCAAGTAGCAGTT+TGG + chr7_4:51214657-51214676 None:intergenic 30.0%
GTGACTAACATTACTTGATA+TGG - chr7_4:51214703-51214722 Msa1161060:CDS 30.0%
!!! AAACACTGTTGTTTTGTTTG+TGG - chr7_4:51214809-51214828 Msa1161060:intron 30.0%
! AACTTTAAAGGAATCAAGCA+TGG + chr7_4:51214883-51214902 None:intergenic 30.0%
ACTACAAGGAAAAAAACAGA+AGG + chr7_4:51214943-51214962 None:intergenic 30.0%
! CTTTGAAGAGAACAAAAGAA+GGG + chr7_4:51213580-51213599 None:intergenic 30.0%
!! AATTGTTGCATTTGGTTTGT+TGG + chr7_4:51213895-51213914 None:intergenic 30.0%
! TGAAAAGATTGATGATCAGA+CGG - chr7_4:51214010-51214029 Msa1161060:intron 30.0%
ATAGTCTGATAGAAATCAAG+TGG - chr7_4:51214114-51214133 Msa1161060:intron 30.0%
! TCGTTGAATATGATTAGCTA+TGG - chr7_4:51214313-51214332 Msa1161060:intron 30.0%
GGTAAACTTGTAAATTAGGA+GGG + chr7_4:51214529-51214548 None:intergenic 30.0%
GATTCATATTCGCTAATAAG+TGG + chr7_4:51214598-51214617 None:intergenic 30.0%
! TTACATTTCAAGTAGCAGTT+TGG + chr7_4:51214657-51214676 None:intergenic 30.0%
GTGACTAACATTACTTGATA+TGG - chr7_4:51214703-51214722 Msa1161060:CDS 30.0%
!!! AAACACTGTTGTTTTGTTTG+TGG - chr7_4:51214809-51214828 Msa1161060:intron 30.0%
! AACTTTAAAGGAATCAAGCA+TGG + chr7_4:51214883-51214902 None:intergenic 30.0%
ACTACAAGGAAAAAAACAGA+AGG + chr7_4:51214943-51214962 None:intergenic 30.0%
TCCACTGATCAATCAGAAAA+TGG - chr7_4:51213307-51213326 Msa1161060:three_prime_UTR 35.0%
TGTAGTAGTGAATGGGAAAA+GGG + chr7_4:51213351-51213370 None:intergenic 35.0%
ATGTAGTAGTGAATGGGAAA+AGG + chr7_4:51213352-51213371 None:intergenic 35.0%
AATGGGATGTAGTAGTGAAT+GGG + chr7_4:51213358-51213377 None:intergenic 35.0%
!! AAATGGTGAGAGCTTTGAAT+GGG + chr7_4:51213375-51213394 None:intergenic 35.0%
! GCTTTTATGAATGCACGAAA+TGG + chr7_4:51213392-51213411 None:intergenic 35.0%
ACCAAGAAGAGAATTCTTGA+AGG - chr7_4:51213454-51213473 Msa1161060:three_prime_UTR 35.0%
CCAAGAAGAGAATTCTTGAA+GGG - chr7_4:51213455-51213474 Msa1161060:three_prime_UTR 35.0%
!! GCTTTGAAGAGAACAAAAGA+AGG + chr7_4:51213581-51213600 None:intergenic 35.0%
!! GTCTAGATTTAGTTCTTTGC+AGG - chr7_4:51213693-51213712 Msa1161060:intron 35.0%
!! ACAAGGAAAAATTCAGGTTG+TGG - chr7_4:51213848-51213867 Msa1161060:intron 35.0%
!! TTGCATTTGGTTTGTTGGTT+AGG + chr7_4:51213890-51213909 None:intergenic 35.0%
CAAACCAAATGCAACAATTG+AGG - chr7_4:51213896-51213915 Msa1161060:intron 35.0%
ATGTCCTCAATTGTTGCATT+TGG + chr7_4:51213903-51213922 None:intergenic 35.0%
AATGCAACAATTGAGGACAT+CGG - chr7_4:51213903-51213922 Msa1161060:intron 35.0%
! ATCTGGATCTAAAGTGTTTC+CGG + chr7_4:51213970-51213989 None:intergenic 35.0%
! ATAAACACACAAGAGCACAA+CGG - chr7_4:51214379-51214398 Msa1161060:intron 35.0%
CAACGGTTAATCACGAAATT+CGG - chr7_4:51214396-51214415 Msa1161060:intron 35.0%
AACTTGTAAATTAGGAGGGT+TGG + chr7_4:51214525-51214544 None:intergenic 35.0%
GGGTAAACTTGTAAATTAGG+AGG + chr7_4:51214530-51214549 None:intergenic 35.0%
CAGGGGTAAACTTGTAAATT+AGG + chr7_4:51214533-51214552 None:intergenic 35.0%
CCAAAAAAATGATGAGAGCA+GGG + chr7_4:51214632-51214651 None:intergenic 35.0%
TCCAAAAAAATGATGAGAGC+AGG + chr7_4:51214633-51214652 None:intergenic 35.0%
TCCACTGATCAATCAGAAAA+TGG - chr7_4:51213307-51213326 Msa1161060:three_prime_UTR 35.0%
TGTAGTAGTGAATGGGAAAA+GGG + chr7_4:51213351-51213370 None:intergenic 35.0%
ATGTAGTAGTGAATGGGAAA+AGG + chr7_4:51213352-51213371 None:intergenic 35.0%
AATGGGATGTAGTAGTGAAT+GGG + chr7_4:51213358-51213377 None:intergenic 35.0%
!! AAATGGTGAGAGCTTTGAAT+GGG + chr7_4:51213375-51213394 None:intergenic 35.0%
! GCTTTTATGAATGCACGAAA+TGG + chr7_4:51213392-51213411 None:intergenic 35.0%
ACCAAGAAGAGAATTCTTGA+AGG - chr7_4:51213454-51213473 Msa1161060:three_prime_UTR 35.0%
CCAAGAAGAGAATTCTTGAA+GGG - chr7_4:51213455-51213474 Msa1161060:three_prime_UTR 35.0%
!! GCTTTGAAGAGAACAAAAGA+AGG + chr7_4:51213581-51213600 None:intergenic 35.0%
!! GTCTAGATTTAGTTCTTTGC+AGG - chr7_4:51213693-51213712 Msa1161060:intron 35.0%
!! ACAAGGAAAAATTCAGGTTG+TGG - chr7_4:51213848-51213867 Msa1161060:intron 35.0%
!! TTGCATTTGGTTTGTTGGTT+AGG + chr7_4:51213890-51213909 None:intergenic 35.0%
CAAACCAAATGCAACAATTG+AGG - chr7_4:51213896-51213915 Msa1161060:intron 35.0%
ATGTCCTCAATTGTTGCATT+TGG + chr7_4:51213903-51213922 None:intergenic 35.0%
AATGCAACAATTGAGGACAT+CGG - chr7_4:51213903-51213922 Msa1161060:intron 35.0%
! ATCTGGATCTAAAGTGTTTC+CGG + chr7_4:51213970-51213989 None:intergenic 35.0%
! ATAAACACACAAGAGCACAA+CGG - chr7_4:51214379-51214398 Msa1161060:intron 35.0%
CAACGGTTAATCACGAAATT+CGG - chr7_4:51214396-51214415 Msa1161060:intron 35.0%
AACTTGTAAATTAGGAGGGT+TGG + chr7_4:51214525-51214544 None:intergenic 35.0%
GGGTAAACTTGTAAATTAGG+AGG + chr7_4:51214530-51214549 None:intergenic 35.0%
CAGGGGTAAACTTGTAAATT+AGG + chr7_4:51214533-51214552 None:intergenic 35.0%
CCAAAAAAATGATGAGAGCA+GGG + chr7_4:51214632-51214651 None:intergenic 35.0%
TCCAAAAAAATGATGAGAGC+AGG + chr7_4:51214633-51214652 None:intergenic 35.0%
TTGATCAGTGGAATGTGTGA+AGG + chr7_4:51213299-51213318 None:intergenic 40.0%
!! GCCATTTTCTGATTGATCAG+TGG + chr7_4:51213311-51213330 None:intergenic 40.0%
GAATGGGATGTAGTAGTGAA+TGG + chr7_4:51213359-51213378 None:intergenic 40.0%
!! GAAATGGTGAGAGCTTTGAA+TGG + chr7_4:51213376-51213395 None:intergenic 40.0%
! ATTCTCTTCTTGGTGTGGTT+TGG + chr7_4:51213448-51213467 None:intergenic 40.0%
CAAGAATTCTCTTCTTGGTG+TGG + chr7_4:51213453-51213472 None:intergenic 40.0%
CCCTTCAAGAATTCTCTTCT+TGG + chr7_4:51213458-51213477 None:intergenic 40.0%
CAAGCTAGAGAAGTTTCAGT+TGG - chr7_4:51213527-51213546 Msa1161060:exon 40.0%
! AAAGAAGGGTCTGATGATGA+AGG + chr7_4:51213566-51213585 None:intergenic 40.0%
AATCAATGTACCAGCACGAA+GGG + chr7_4:51213624-51213643 None:intergenic 40.0%
CGGATAGCTAACATACTATC+AGG - chr7_4:51213765-51213784 Msa1161060:intron 40.0%
TCAAATTTAACCTCGACCCA+TGG + chr7_4:51213819-51213838 None:intergenic 40.0%
! TTGTTGGTTAGGCGTATCAA+AGG + chr7_4:51213879-51213898 None:intergenic 40.0%
ATGCAACAATTGAGGACATC+GGG - chr7_4:51213904-51213923 Msa1161060:intron 40.0%
! GAGAAGCGATAAGCTTTTCT+GGG + chr7_4:51213932-51213951 None:intergenic 40.0%
! AGAGAAGCGATAAGCTTTTC+TGG + chr7_4:51213933-51213952 None:intergenic 40.0%
GAAAAGCTTATCGCTTCTCT+CGG - chr7_4:51213933-51213952 Msa1161060:intron 40.0%
! AAAGTGTTTCCGGTGACAAA+TGG + chr7_4:51213960-51213979 None:intergenic 40.0%
AATTCCCTCAGCATAACCTA+TGG + chr7_4:51214217-51214236 None:intergenic 40.0%
TACAAGAGTCACTCTGTTGT+CGG + chr7_4:51214439-51214458 None:intergenic 40.0%
!!! CCCTGCTCTCATCATTTTTT+TGG - chr7_4:51214629-51214648 Msa1161060:CDS 40.0%
GAAACTCCATATGCTCTTAC+TGG - chr7_4:51214753-51214772 Msa1161060:intron 40.0%
! TGTGAACCAGTAAGAGCATA+TGG + chr7_4:51214762-51214781 None:intergenic 40.0%
TCTTGCAAAAGCAACAGCAA+AGG - chr7_4:51214785-51214804 Msa1161060:intron 40.0%
CTTGCAAAAGCAACAGCAAA+GGG - chr7_4:51214786-51214805 Msa1161060:intron 40.0%
TTGATCAGTGGAATGTGTGA+AGG + chr7_4:51213299-51213318 None:intergenic 40.0%
!! GCCATTTTCTGATTGATCAG+TGG + chr7_4:51213311-51213330 None:intergenic 40.0%
GAATGGGATGTAGTAGTGAA+TGG + chr7_4:51213359-51213378 None:intergenic 40.0%
!! GAAATGGTGAGAGCTTTGAA+TGG + chr7_4:51213376-51213395 None:intergenic 40.0%
! ATTCTCTTCTTGGTGTGGTT+TGG + chr7_4:51213448-51213467 None:intergenic 40.0%
CAAGAATTCTCTTCTTGGTG+TGG + chr7_4:51213453-51213472 None:intergenic 40.0%
CCCTTCAAGAATTCTCTTCT+TGG + chr7_4:51213458-51213477 None:intergenic 40.0%
CAAGCTAGAGAAGTTTCAGT+TGG - chr7_4:51213527-51213546 Msa1161060:exon 40.0%
! AAAGAAGGGTCTGATGATGA+AGG + chr7_4:51213566-51213585 None:intergenic 40.0%
AATCAATGTACCAGCACGAA+GGG + chr7_4:51213624-51213643 None:intergenic 40.0%
CGGATAGCTAACATACTATC+AGG - chr7_4:51213765-51213784 Msa1161060:intron 40.0%
TCAAATTTAACCTCGACCCA+TGG + chr7_4:51213819-51213838 None:intergenic 40.0%
! TTGTTGGTTAGGCGTATCAA+AGG + chr7_4:51213879-51213898 None:intergenic 40.0%
ATGCAACAATTGAGGACATC+GGG - chr7_4:51213904-51213923 Msa1161060:intron 40.0%
! GAGAAGCGATAAGCTTTTCT+GGG + chr7_4:51213932-51213951 None:intergenic 40.0%
! AGAGAAGCGATAAGCTTTTC+TGG + chr7_4:51213933-51213952 None:intergenic 40.0%
GAAAAGCTTATCGCTTCTCT+CGG - chr7_4:51213933-51213952 Msa1161060:intron 40.0%
! AAAGTGTTTCCGGTGACAAA+TGG + chr7_4:51213960-51213979 None:intergenic 40.0%
AATTCCCTCAGCATAACCTA+TGG + chr7_4:51214217-51214236 None:intergenic 40.0%
TACAAGAGTCACTCTGTTGT+CGG + chr7_4:51214439-51214458 None:intergenic 40.0%
!!! CCCTGCTCTCATCATTTTTT+TGG - chr7_4:51214629-51214648 Msa1161060:CDS 40.0%
GAAACTCCATATGCTCTTAC+TGG - chr7_4:51214753-51214772 Msa1161060:intron 40.0%
! TGTGAACCAGTAAGAGCATA+TGG + chr7_4:51214762-51214781 None:intergenic 40.0%
TCTTGCAAAAGCAACAGCAA+AGG - chr7_4:51214785-51214804 Msa1161060:intron 40.0%
CTTGCAAAAGCAACAGCAAA+GGG - chr7_4:51214786-51214805 Msa1161060:intron 40.0%
GGAATGTGTGAAGGAAGGAA+GGG + chr7_4:51213290-51213309 None:intergenic 45.0%
TGGAATGTGTGAAGGAAGGA+AGG + chr7_4:51213291-51213310 None:intergenic 45.0%
TCAGTGGAATGTGTGAAGGA+AGG + chr7_4:51213295-51213314 None:intergenic 45.0%
AATGGGAAAAGGGAGGTGAA+TGG + chr7_4:51213341-51213360 None:intergenic 45.0%
AGTAGTGAATGGGAAAAGGG+AGG + chr7_4:51213348-51213367 None:intergenic 45.0%
! GTGGTTTGGAAGTGAGTTTC+AGG + chr7_4:51213434-51213453 None:intergenic 45.0%
! ACTTCTCTAGCTTGTGACTG+TGG + chr7_4:51213521-51213540 None:intergenic 45.0%
! AAGGGTCTGATGATGAAGGA+GGG + chr7_4:51213562-51213581 None:intergenic 45.0%
CAATCAATGTACCAGCACGA+AGG + chr7_4:51213625-51213644 None:intergenic 45.0%
! TCCGAAGCTGTTTCCATGTT+GGG + chr7_4:51213749-51213768 None:intergenic 45.0%
! ATCCGAAGCTGTTTCCATGT+TGG + chr7_4:51213750-51213769 None:intergenic 45.0%
AACCAAAATGTGCAGAGCCA+TGG - chr7_4:51213799-51213818 Msa1161060:intron 45.0%
ACCAAAATGTGCAGAGCCAT+GGG - chr7_4:51213800-51213819 Msa1161060:intron 45.0%
! TCTTTTCAACTGAAGCCTCG+AGG + chr7_4:51213998-51214017 None:intergenic 45.0%
GAGTTTCATCCTCCTACCAT+AGG - chr7_4:51214198-51214217 Msa1161060:intron 45.0%
TCAGCATAACCTATGGTAGG+AGG + chr7_4:51214210-51214229 None:intergenic 45.0%
TCCTACCATAGGTTATGCTG+AGG - chr7_4:51214209-51214228 Msa1161060:intron 45.0%
CCTACCATAGGTTATGCTGA+GGG - chr7_4:51214210-51214229 Msa1161060:intron 45.0%
GACAGACACTCGAACATAGT+GGG + chr7_4:51214576-51214595 None:intergenic 45.0%
AGTTTGCCACTGCTTGTCAT+TGG + chr7_4:51214841-51214860 None:intergenic 45.0%
GGAATGTGTGAAGGAAGGAA+GGG + chr7_4:51213290-51213309 None:intergenic 45.0%
TGGAATGTGTGAAGGAAGGA+AGG + chr7_4:51213291-51213310 None:intergenic 45.0%
TCAGTGGAATGTGTGAAGGA+AGG + chr7_4:51213295-51213314 None:intergenic 45.0%
AATGGGAAAAGGGAGGTGAA+TGG + chr7_4:51213341-51213360 None:intergenic 45.0%
AGTAGTGAATGGGAAAAGGG+AGG + chr7_4:51213348-51213367 None:intergenic 45.0%
! GTGGTTTGGAAGTGAGTTTC+AGG + chr7_4:51213434-51213453 None:intergenic 45.0%
! ACTTCTCTAGCTTGTGACTG+TGG + chr7_4:51213521-51213540 None:intergenic 45.0%
! AAGGGTCTGATGATGAAGGA+GGG + chr7_4:51213562-51213581 None:intergenic 45.0%
CAATCAATGTACCAGCACGA+AGG + chr7_4:51213625-51213644 None:intergenic 45.0%
! TCCGAAGCTGTTTCCATGTT+GGG + chr7_4:51213749-51213768 None:intergenic 45.0%
! ATCCGAAGCTGTTTCCATGT+TGG + chr7_4:51213750-51213769 None:intergenic 45.0%
AACCAAAATGTGCAGAGCCA+TGG - chr7_4:51213799-51213818 Msa1161060:intron 45.0%
ACCAAAATGTGCAGAGCCAT+GGG - chr7_4:51213800-51213819 Msa1161060:intron 45.0%
! TCTTTTCAACTGAAGCCTCG+AGG + chr7_4:51213998-51214017 None:intergenic 45.0%
GAGTTTCATCCTCCTACCAT+AGG - chr7_4:51214198-51214217 Msa1161060:intron 45.0%
TCAGCATAACCTATGGTAGG+AGG + chr7_4:51214210-51214229 None:intergenic 45.0%
TCCTACCATAGGTTATGCTG+AGG - chr7_4:51214209-51214228 Msa1161060:intron 45.0%
CCTACCATAGGTTATGCTGA+GGG - chr7_4:51214210-51214229 Msa1161060:intron 45.0%
GACAGACACTCGAACATAGT+GGG + chr7_4:51214576-51214595 None:intergenic 45.0%
AGTTTGCCACTGCTTGTCAT+TGG + chr7_4:51214841-51214860 None:intergenic 45.0%
TGTGAAGGAAGGAAGGGACA+AGG + chr7_4:51213284-51213303 None:intergenic 50.0%
AGGAACTGAGACAGAAGCAG+AGG + chr7_4:51213414-51213433 None:intergenic 50.0%
GGCTCTGTGAGAGCAATAAG+TGG + chr7_4:51213497-51213516 None:intergenic 50.0%
! TCTCTAGCTTGTGACTGTGG+TGG + chr7_4:51213518-51213537 None:intergenic 50.0%
! GAAGGGTCTGATGATGAAGG+AGG + chr7_4:51213563-51213582 None:intergenic 50.0%
!! CGAAGGGCAGGAGTATCTTT+AGG + chr7_4:51213608-51213627 None:intergenic 50.0%
ATGTTGGGGGAAGGATGAAC+TGG + chr7_4:51213734-51213753 None:intergenic 50.0%
AGTTCATCCTTCCCCCAACA+TGG - chr7_4:51213733-51213752 Msa1161060:intron 50.0%
! CGAAGCTGTTTCCATGTTGG+GGG + chr7_4:51213747-51213766 None:intergenic 50.0%
! CCGAAGCTGTTTCCATGTTG+GGG + chr7_4:51213748-51213767 None:intergenic 50.0%
CCCCAACATGGAAACAGCTT+CGG - chr7_4:51213745-51213764 Msa1161060:intron 50.0%
!! ACCCATGGCTCTGCACATTT+TGG + chr7_4:51213804-51213823 None:intergenic 50.0%
TCTCTCGGTCCATTTGTCAC+CGG - chr7_4:51213948-51213967 Msa1161060:intron 50.0%
CCCTCAGCATAACCTATGGT+AGG + chr7_4:51214213-51214232 None:intergenic 50.0%
TTACCCCTGAACTGTACGTC+AGG - chr7_4:51214544-51214563 Msa1161060:CDS 50.0%
TACCCCTGAACTGTACGTCA+GGG - chr7_4:51214545-51214564 Msa1161060:CDS 50.0%
AACCCCTGACGTACAGTTCA+GGG + chr7_4:51214551-51214570 None:intergenic 50.0%
GGACAGACACTCGAACATAG+TGG + chr7_4:51214577-51214596 None:intergenic 50.0%
CTAGTGCCAATGACAAGCAG+TGG - chr7_4:51214832-51214851 Msa1161060:CDS 50.0%
TGTGAAGGAAGGAAGGGACA+AGG + chr7_4:51213284-51213303 None:intergenic 50.0%
AGGAACTGAGACAGAAGCAG+AGG + chr7_4:51213414-51213433 None:intergenic 50.0%
GGCTCTGTGAGAGCAATAAG+TGG + chr7_4:51213497-51213516 None:intergenic 50.0%
! TCTCTAGCTTGTGACTGTGG+TGG + chr7_4:51213518-51213537 None:intergenic 50.0%
! GAAGGGTCTGATGATGAAGG+AGG + chr7_4:51213563-51213582 None:intergenic 50.0%
!! CGAAGGGCAGGAGTATCTTT+AGG + chr7_4:51213608-51213627 None:intergenic 50.0%
ATGTTGGGGGAAGGATGAAC+TGG + chr7_4:51213734-51213753 None:intergenic 50.0%
AGTTCATCCTTCCCCCAACA+TGG - chr7_4:51213733-51213752 Msa1161060:intron 50.0%
! CGAAGCTGTTTCCATGTTGG+GGG + chr7_4:51213747-51213766 None:intergenic 50.0%
! CCGAAGCTGTTTCCATGTTG+GGG + chr7_4:51213748-51213767 None:intergenic 50.0%
CCCCAACATGGAAACAGCTT+CGG - chr7_4:51213745-51213764 Msa1161060:intron 50.0%
!! ACCCATGGCTCTGCACATTT+TGG + chr7_4:51213804-51213823 None:intergenic 50.0%
TCTCTCGGTCCATTTGTCAC+CGG - chr7_4:51213948-51213967 Msa1161060:intron 50.0%
CCCTCAGCATAACCTATGGT+AGG + chr7_4:51214213-51214232 None:intergenic 50.0%
TTACCCCTGAACTGTACGTC+AGG - chr7_4:51214544-51214563 Msa1161060:CDS 50.0%
TACCCCTGAACTGTACGTCA+GGG - chr7_4:51214545-51214564 Msa1161060:CDS 50.0%
AACCCCTGACGTACAGTTCA+GGG + chr7_4:51214551-51214570 None:intergenic 50.0%
GGACAGACACTCGAACATAG+TGG + chr7_4:51214577-51214596 None:intergenic 50.0%
CTAGTGCCAATGACAAGCAG+TGG - chr7_4:51214832-51214851 Msa1161060:CDS 50.0%
! GGTCTGATGATGAAGGAGGG+AGG + chr7_4:51213559-51213578 None:intergenic 55.0%
AATGTACCAGCACGAAGGGC+AGG + chr7_4:51213620-51213639 None:intergenic 55.0%
GGGGGAAGGATGAACTGGTA+TGG + chr7_4:51213729-51213748 None:intergenic 55.0%
! GCTGTTTCCATGTTGGGGGA+AGG + chr7_4:51213743-51213762 None:intergenic 55.0%
AGATCCAGATGAGCTCCTCG+AGG - chr7_4:51213980-51213999 Msa1161060:intron 55.0%
ACCCCTGAACTGTACGTCAG+GGG - chr7_4:51214546-51214565 Msa1161060:CDS 55.0%
ACCCCTGACGTACAGTTCAG+GGG + chr7_4:51214550-51214569 None:intergenic 55.0%
GAACCCCTGACGTACAGTTC+AGG + chr7_4:51214552-51214571 None:intergenic 55.0%
! GGTCTGATGATGAAGGAGGG+AGG + chr7_4:51213559-51213578 None:intergenic 55.0%
AATGTACCAGCACGAAGGGC+AGG + chr7_4:51213620-51213639 None:intergenic 55.0%
GGGGGAAGGATGAACTGGTA+TGG + chr7_4:51213729-51213748 None:intergenic 55.0%
! GCTGTTTCCATGTTGGGGGA+AGG + chr7_4:51213743-51213762 None:intergenic 55.0%
AGATCCAGATGAGCTCCTCG+AGG - chr7_4:51213980-51213999 Msa1161060:intron 55.0%
ACCCCTGAACTGTACGTCAG+GGG - chr7_4:51214546-51214565 Msa1161060:CDS 55.0%
ACCCCTGACGTACAGTTCAG+GGG + chr7_4:51214550-51214569 None:intergenic 55.0%
GAACCCCTGACGTACAGTTC+AGG + chr7_4:51214552-51214571 None:intergenic 55.0%
GATACTCCTGCCCTTCGTGC+TGG - chr7_4:51213611-51213630 Msa1161060:CDS 60.0%
ATGTGCAGAGCCATGGGTCG+AGG - chr7_4:51213806-51213825 Msa1161060:intron 60.0%
GAAGCCTCGAGGAGCTCATC+TGG + chr7_4:51213987-51214006 None:intergenic 60.0%
GATACTCCTGCCCTTCGTGC+TGG - chr7_4:51213611-51213630 Msa1161060:CDS 60.0%
ATGTGCAGAGCCATGGGTCG+AGG - chr7_4:51213806-51213825 Msa1161060:intron 60.0%
GAAGCCTCGAGGAGCTCATC+TGG + chr7_4:51213987-51214006 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 51213220 51215223 51213220 ID=Msa1161060;Name=Msa1161060
chr7_4 mRNA 51213220 51215223 51213220 ID=Msa1161060-mRNA-1;Parent=Msa1161060;Name=Msa1161060-mRNA-1;_AED=0.02;_eAED=0.02;_QI=106|1|1|1|1|1|3|318|264
chr7_4 exon 51213220 51213708 51213220 ID=Msa1161060-mRNA-1:exon:14441;Parent=Msa1161060-mRNA-1
chr7_4 exon 51214412 51214728 51214412 ID=Msa1161060-mRNA-1:exon:14440;Parent=Msa1161060-mRNA-1
chr7_4 exon 51214811 51215223 51214811 ID=Msa1161060-mRNA-1:exon:14439;Parent=Msa1161060-mRNA-1
chr7_4 five_prime_UTR 51215118 51215223 51215118 ID=Msa1161060-mRNA-1:five_prime_utr;Parent=Msa1161060-mRNA-1
chr7_4 CDS 51214811 51215117 51214811 ID=Msa1161060-mRNA-1:cds;Parent=Msa1161060-mRNA-1
chr7_4 CDS 51214412 51214728 51214412 ID=Msa1161060-mRNA-1:cds;Parent=Msa1161060-mRNA-1
chr7_4 CDS 51213538 51213708 51213538 ID=Msa1161060-mRNA-1:cds;Parent=Msa1161060-mRNA-1
chr7_4 three_prime_UTR 51213220 51213537 51213220 ID=Msa1161060-mRNA-1:three_prime_utr;Parent=Msa1161060-mRNA-1
Gene Sequence

>Msa1161060

ATGGCAACTTCTCCATTCACCTCCCTTTTCCCATTCACTACTACATCCCATTCAAAGCTCTCACCATTTCGTGCATTCATAAAAGCCTCTGCTTCTGTCTCAGTTCCTGAAACTCACTTCCAAACCACACCAAGAAGAGAATTCTTGAAGGGTATTGCTCTTTCACTACCACTTATTGCTCTCACAGAGCCACCACAGTCACAAGCTAGAGAAGTTTCAGTTGGTTCTTTCCTCCCTCCTTCATCATCAGACCCTTCTTTTGTTCTCTTCAAAGCTTCTCCTAAAGATACTCCTGCCCTTCGTGCTGGAAATGTGCAGCCATACCAGTTCATCCTTCCCCCAACATGGAAACAGCTTCGGATAGCTAACATACTATCAGGAAACTACTGTCAACCAAAATGTGCAGAGCCATGGGTCGAGGTTAAATTTGAAGATGAAAAACAAGGAAAAATTCAGGTTGTGGCTTCACCTTTGATACGCCTAACCAACAAACCAAATGCAACAATTGAGGACATCGGGAGCCCAGAAAAGCTTATCGCTTCTCTCGGTCCATTTGTCACCGGAAACACTTTAGATCCAGATGAGCTCCTCGAGGCTTCAGTTGAAAAGATTGATGATCAGACGTACTACAAATATGTGCTTGAAACTCCATATGCTCTTACTGGTTCACACAATCTTGCAAAAGCAACAGCAAAGGGAAACACTGTTGTTTTGTTTGTGGCTAGTGCCAATGACAAGCAGTGGCAAACTTCTGAGAAGATTCTAAAGACCATGCTTGATTCCTTTAAAGTTTAG

Protein sequence

>Msa1161060

MATSPFTSLFPFTTTSHSKLSPFRAFIKASASVSVPETHFQTTPRREFLKGIALSLPLIALTEPPQSQAREVSVGSFLPPSSSDPSFVLFKASPKDTPALRAGNVQPYQFILPPTWKQLRIANILSGNYCQPKCAEPWVEVKFEDEKQGKIQVVASPLIRLTNKPNATIEDIGSPEKLIASLGPFVTGNTLDPDELLEASVEKIDDQTYYKYVLETPYALTGSHNLAKATAKGNTVVLFVASANDKQWQTSEKILKTMLDSFKV*