AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1159420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1159420 MtrunA17_Chr7g0254481 91.597 357 8 1 1 357 1 335 0.0 643
Msa1159420 MtrunA17_Chr3g0115281 41.702 235 109 3 103 333 84 294 5.22e-52 174
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1159420 AT5G17710.2 55.689 334 112 7 1 327 1 305 1.30e-103 308
Msa1159420 AT5G17710.3 55.090 334 112 7 1 327 1 303 7.19e-102 303
Msa1159420 AT5G17710.1 55.090 334 112 7 1 327 1 303 7.19e-102 303
Msa1159420 AT1G36390.1 46.154 208 90 1 115 322 78 263 1.20e-58 191
Msa1159420 AT1G36390.2 46.154 208 90 1 115 322 78 263 1.20e-58 191

Find 145 sgRNAs with CRISPR-Local

Find 315 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCTCCAGGAACGTAATTA+TGG 0.202120 7_4:+49034742 Msa1159420:three_prime_UTR
CTCATAATTTCTGTATTCTT+TGG 0.228496 7_4:+49035007 Msa1159420:three_prime_UTR
TAATACTAATTCCCCTTAAA+AGG 0.236252 7_4:-49034802 None:intergenic
ACTTCTTGCTCCGGCTTTGC+AGG 0.275813 7_4:-49034587 None:intergenic
CGTCATTCTCTTTACTGTCC+TGG 0.299850 7_4:-49034643 None:intergenic
TGCTCCGGCTTTGCAGGTCC+TGG 0.309086 7_4:-49034581 None:intergenic
TTCACCTGAGGTTCAGGTTC+TGG 0.325601 7_4:+49030770 Msa1159420:CDS
TCAAGATTCACCTGAGGTTC+AGG 0.330277 7_4:+49030764 Msa1159420:CDS
GACGGAAACGCGTGAGGTTC+TGG 0.344746 7_4:-49030622 None:intergenic
GCTGATACCTTCACCATTGA+TGG 0.346148 7_4:-49034554 None:intergenic
CGGCGGTGGTGAGAAGGGTT+GGG 0.348997 7_4:-49030581 None:intergenic
AAGAGGTGAAGGTCTTCTTC+TGG 0.355726 7_4:-49030652 None:intergenic
AGTGTTTGGCACCTGGAGTT+AGG 0.357552 7_4:+49034942 Msa1159420:three_prime_UTR
GTGCAGACTTTGACAATTAT+CGG 0.363290 7_4:+49033352 Msa1159420:CDS
ACTGTCCTGGGAAGTTTCAT+TGG 0.386463 7_4:-49034630 None:intergenic
GGAGAGTTTGTTGCCTGTAT+TGG 0.387083 7_4:+49033431 Msa1159420:CDS
TTTATGCCCTTGCATGGCTT+TGG 0.387458 7_4:+49034852 Msa1159420:three_prime_UTR
ACGGCGGTGGTGAGAAGGGT+TGG 0.391478 7_4:-49030582 None:intergenic
GTTGCAATTGTTCAAGTGTT+TGG 0.393480 7_4:+49034928 Msa1159420:three_prime_UTR
ATCTCCAGGAACGTAATTAT+GGG 0.395601 7_4:+49034743 Msa1159420:three_prime_UTR
ATGGCCGGAATGTGGGAGTT+CGG 0.396663 7_4:-49030557 None:intergenic
TGTTGAAGAGGAAATGAAAT+TGG 0.400551 7_4:-49030483 None:intergenic
GGTTGGGGATGGCCGGAATG+TGG 0.403395 7_4:-49030565 None:intergenic
CTTGAAAGGACAACTTTGCC+TGG 0.404934 7_4:+49034687 Msa1159420:exon
AAGGTACTAACTTGACGAAC+CGG 0.414480 7_4:-49030707 None:intergenic
AACACCCATAATTACGTTCC+TGG 0.419126 7_4:-49034747 None:intergenic
TATTGATAACTCTTCGGATA+AGG 0.421690 7_4:-49033304 None:intergenic
TCCTCCGAACTCCCACATTC+CGG 0.425268 7_4:+49030553 Msa1159420:CDS
TCCTGTGGTACTTCTTGCTC+CGG 0.427586 7_4:-49034596 None:intergenic
CTCTCAAAATTATCCAATAC+AGG 0.430687 7_4:-49033444 None:intergenic
TAACTTACCATTGGATCAAA+GGG 0.441395 7_4:-49033597 None:intergenic
TTGTTCAAGTGTTTGGCACC+TGG 0.444360 7_4:+49034935 Msa1159420:three_prime_UTR
CCTCTTAAATCCCACCGGTT+CGG 0.449999 7_4:+49030669 Msa1159420:CDS
GTCATTCTCTTTACTGTCCT+GGG 0.450604 7_4:-49034642 None:intergenic
GATGAGATAGTAGGTCTTGA+AGG 0.461337 7_4:+49033270 Msa1159420:CDS
TGGTCCAGGACCTGCAAAGC+CGG 0.475014 7_4:+49034577 Msa1159420:CDS
GATGATGAGGTCAGCGACGC+TGG 0.477103 7_4:+49033135 Msa1159420:CDS
GGCGGTGGTGAGAAGGGTTG+GGG 0.479035 7_4:-49030580 None:intergenic
CGATTGAATTTCGAGCCAAC+TGG 0.479280 7_4:-49034036 None:intergenic
CCTTTCAGAAACATGGTACC+TGG 0.480611 7_4:-49034894 None:intergenic
ATGAAATTGGTGGGAAATGA+GGG 0.480912 7_4:-49030470 None:intergenic
ACCTACTATCTCATCATCAA+TGG 0.481367 7_4:-49033262 None:intergenic
CCCTTAAAAGGAAACTTGGC+AGG 0.483349 7_4:-49034790 None:intergenic
TTGAACAATTGCAACTCACT+CGG 0.485267 7_4:-49034920 None:intergenic
TGAACAATTGCAACTCACTC+GGG 0.486245 7_4:-49034919 None:intergenic
GCCGGAGCAAGAAGTACCAC+AGG 0.489513 7_4:+49034595 Msa1159420:CDS
CGATAGAGACCGCCTTTCAC+TGG 0.489615 7_4:+49033383 Msa1159420:CDS
TGGAGTTGAGCCAGTGGATA+CGG 0.491468 7_4:+49033566 Msa1159420:CDS
TGAGAAGGGTTGGGGATGGC+CGG 0.493613 7_4:-49030572 None:intergenic
ATTCCCCTTAAAAGGAAACT+TGG 0.493670 7_4:-49034794 None:intergenic
TTAACTTACCATTGGATCAA+AGG 0.494416 7_4:-49033598 None:intergenic
TATCTATCAGTTTAATCTCC+AGG 0.498081 7_4:+49034729 Msa1159420:three_prime_UTR
CCGCCTCTTACGTCCATCAA+TGG 0.498736 7_4:+49034541 Msa1159420:CDS
GTTGGGGATGGCCGGAATGT+GGG 0.500157 7_4:-49030564 None:intergenic
CAGTGAAAGGCGGTCTCTAT+CGG 0.505259 7_4:-49033382 None:intergenic
CCGAACCGGTGGGATTTAAG+AGG 0.507744 7_4:-49030669 None:intergenic
GTTCGGAGGACGGTGGCCAT+CGG 0.508967 7_4:-49030540 None:intergenic
CAAGGTGGAGACAGAGGGAG+AGG 0.511028 7_4:+49033482 Msa1159420:CDS
TCGGTTCAATTCCCACTCCC+CGG 0.511973 7_4:+49030688 Msa1159420:CDS
ATTGAAATTCTAAACTCACT+TGG 0.514285 7_4:+49033546 Msa1159420:CDS
AACTTGACGAACCGGGGAGT+GGG 0.515310 7_4:-49030699 None:intergenic
TCACCATTGATGGACGTAAG+AGG 0.516147 7_4:-49034544 None:intergenic
ATACTTCAAGAATTCAGAAA+GGG 0.518433 7_4:+49034503 Msa1159420:CDS
AGGTGACGGCGGTGGTGAGA+AGG 0.518945 7_4:-49030587 None:intergenic
AGAAACAGAGTCCGCTTGAA+AGG 0.521889 7_4:+49034673 Msa1159420:exon
AATACTATCAGAGGTGAAGC+AGG 0.523830 7_4:-49033165 None:intergenic
GTGGTGAGAAGGGTTGGGGA+TGG 0.524363 7_4:-49030576 None:intergenic
AGGTACTAACTTGACGAACC+GGG 0.524465 7_4:-49030706 None:intergenic
GAGAGCTAAAGCTCAGATCA+AGG 0.525781 7_4:+49033464 Msa1159420:CDS
TGCAGTCAAAGTTGCTGAGT+TGG 0.525898 7_4:+49033224 Msa1159420:CDS
TACAGATGGTGCTGCTGATG+TGG 0.527477 7_4:+49033098 Msa1159420:CDS
GTATCTCCGTCAAAAGCAAA+AGG 0.528487 7_4:-49030726 None:intergenic
TGGAAGTCCCTTTGATCCAA+TGG 0.531419 7_4:+49033590 Msa1159420:CDS
CACTGGTCACAAATGCTCAA+GGG 0.535412 7_4:+49033400 Msa1159420:CDS
AATGAAATTGGTGGGAAATG+AGG 0.537988 7_4:-49030471 None:intergenic
TAACTTGACGAACCGGGGAG+TGG 0.538642 7_4:-49030700 None:intergenic
GAGTGGGAATTGAACCGAAC+CGG 0.540147 7_4:-49030683 None:intergenic
CTTACCAGAACCTGAACCTC+AGG 0.544704 7_4:-49030774 None:intergenic
CATACTTCAAGAATTCAGAA+AGG 0.546520 7_4:+49034502 Msa1159420:CDS
CCAGGTACCATGTTTCTGAA+AGG 0.546524 7_4:+49034894 Msa1159420:three_prime_UTR
GTGAAGGTATCAGCTGGTCC+AGG 0.550393 7_4:+49034563 Msa1159420:CDS
GTGGCCATCGGAAGAAGATA+AGG 0.551051 7_4:-49030528 None:intergenic
GATTCTGATGAATTTGAAGA+TGG 0.552865 7_4:+49034476 Msa1159420:CDS
ATCTTGAACTTGAGGTGCCT+CGG 0.553813 7_4:-49030748 None:intergenic
GAGCATTTGTGACCAGTGAA+AGG 0.557793 7_4:-49033395 None:intergenic
TCCATTGATGATGAGATAGT+AGG 0.558085 7_4:+49033261 Msa1159420:CDS
TCAGGTGAATCTTGAACTTG+AGG 0.558414 7_4:-49030756 None:intergenic
GGTGACGGCGGTGGTGAGAA+GGG 0.560659 7_4:-49030586 None:intergenic
CTTACCTTATCTTCTTCCGA+TGG 0.561511 7_4:+49030524 Msa1159420:exon
AGATAAGGTAAGGTGGCGAT+TGG 0.562247 7_4:-49030513 None:intergenic
ATTAGAAGAGGTGACGGCGG+TGG 0.565644 7_4:-49030595 None:intergenic
ATGCAGGGGCGCAAACCAGT+TGG 0.567238 7_4:+49034021 Msa1159420:intron
TCACTGGTCACAAATGCTCA+AGG 0.568684 7_4:+49033399 Msa1159420:CDS
GGCAAAGTTGTCCTTTCAAG+CGG 0.568729 7_4:-49034684 None:intergenic
GAATGTGGGAGTTCGGAGGA+CGG 0.572182 7_4:-49030550 None:intergenic
CGGTGGGATTTAAGAGGTGA+AGG 0.573354 7_4:-49030663 None:intergenic
ACACTGATTCTCCTAACTCC+AGG 0.573651 7_4:-49034953 None:intergenic
TGGGAATTGAACCGAACCGG+TGG 0.574334 7_4:-49030680 None:intergenic
TTGGTGACTTGTTCTTCCTG+TGG 0.575510 7_4:-49034611 None:intergenic
CAGATCAAGGTGGAGACAGA+GGG 0.576696 7_4:+49033477 Msa1159420:CDS
ATGAGATAGTAGGTCTTGAA+GGG 0.578111 7_4:+49033271 Msa1159420:CDS
GGAGAGTACAGGCGATGATG+AGG 0.580094 7_4:+49033122 Msa1159420:CDS
TCTTCTTCTGGAGGATGCGA+CGG 0.580174 7_4:-49030640 None:intergenic
ACTTGTACAAAACTGAATCC+AGG 0.580787 7_4:-49034705 None:intergenic
TCAGATCAAGGTGGAGACAG+AGG 0.582701 7_4:+49033476 Msa1159420:CDS
ATATCTACCAAAGCCATGCA+AGG 0.584445 7_4:-49034859 None:intergenic
CATCGGAAGAAGATAAGGTA+AGG 0.589405 7_4:-49030523 None:intergenic
GTTGAGCCAGTGGATACGGT+TGG 0.590743 7_4:+49033570 Msa1159420:CDS
GGACTTCCAACCGTATCCAC+TGG 0.596990 7_4:-49033576 None:intergenic
TCAATGGTGAAGGTATCAGC+TGG 0.597135 7_4:+49034557 Msa1159420:CDS
CTTCACCTCTTAAATCCCAC+CGG 0.598298 7_4:+49030664 Msa1159420:CDS
GGTTCTGGAGTGATTAGAAG+AGG 0.599333 7_4:-49030607 None:intergenic
GCTGATGTGGAGGAGAGTAC+AGG 0.601575 7_4:+49033111 Msa1159420:CDS
GACTGAAGTAATACTATCAG+AGG 0.601933 7_4:-49033174 None:intergenic
AAATGCTCAAGGGGAAGTTG+TGG 0.607604 7_4:+49033410 Msa1159420:CDS
AAAGATCGAAAACTAAGGAT+CGG 0.611204 7_4:+49033330 Msa1159420:CDS
ATTGGCGAATTGTGTTGAAG+AGG 0.611554 7_4:-49030495 None:intergenic
AGTCACCAATGAAACTTCCC+AGG 0.615111 7_4:+49034625 Msa1159420:CDS
CGAGTGTTAATGTTAAGCTG+TGG 0.617060 7_4:-49035098 None:intergenic
ACTGGTCACAAATGCTCAAG+GGG 0.619416 7_4:+49033401 Msa1159420:CDS
CTTACGTCCATCAATGGTGA+AGG 0.622403 7_4:+49034547 Msa1159420:CDS
CTTTCAGAAACATGGTACCT+GGG 0.628287 7_4:-49034893 None:intergenic
ATTCAACAGGACTCTACAGA+TGG 0.628787 7_4:+49033084 Msa1159420:intron
TGAAGAGGAAATGAAATTGG+TGG 0.633608 7_4:-49030480 None:intergenic
GGAGTGATTAGAAGAGGTGA+CGG 0.634113 7_4:-49030601 None:intergenic
GCCGGAATGTGGGAGTTCGG+AGG 0.636031 7_4:-49030554 None:intergenic
CTCACTTGGAGTTGAGCCAG+TGG 0.641190 7_4:+49033560 Msa1159420:CDS
CGGAAGAAGATAAGGTAAGG+TGG 0.641744 7_4:-49030520 None:intergenic
TGTGGGAGTTCGGAGGACGG+TGG 0.642626 7_4:-49030547 None:intergenic
TCGGGGTCCTTTCAGAAACA+TGG 0.644196 7_4:-49034901 None:intergenic
GGATGCGACGGAAACGCGTG+AGG 0.644324 7_4:-49030628 None:intergenic
AGATGGTGCTGCTGATGTGG+AGG 0.644434 7_4:+49033101 Msa1159420:CDS
GAAGAGGAAATGAAATTGGT+GGG 0.646373 7_4:-49030479 None:intergenic
AGGTGAAGGTCTTCTTCTGG+AGG 0.646515 7_4:-49030649 None:intergenic
ACATGAAGCAATTATGCGTG+AGG 0.649725 7_4:+49034454 Msa1159420:CDS
GAACAATTGCAACTCACTCG+GGG 0.651509 7_4:-49034918 None:intergenic
TATCTACCAAAGCCATGCAA+GGG 0.656555 7_4:-49034858 None:intergenic
GGTACTAACTTGACGAACCG+GGG 0.661706 7_4:-49030705 None:intergenic
GGGAATTGAACCGAACCGGT+GGG 0.665597 7_4:-49030679 None:intergenic
CAGGACAGTAAAGAGAATGA+CGG 0.668315 7_4:+49034644 Msa1159420:CDS
CATTTGTGACCAGTGAAAGG+CGG 0.686573 7_4:-49033392 None:intergenic
CCATTGATGGACGTAAGAGG+CGG 0.691889 7_4:-49034541 None:intergenic
TCAAGTTCAAGATTCACCTG+AGG 0.703232 7_4:+49030758 Msa1159420:CDS
AGCTAAAGCTCAGATCAAGG+TGG 0.719934 7_4:+49033467 Msa1159420:CDS
GTGATTAGAAGAGGTGACGG+CGG 0.729263 7_4:-49030598 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCAAAAGAAAAATAAAAAA+TGG - chr7_4:49031560-49031579 None:intergenic 10.0%
!! AAATTAAAGTATAGAAATAT+TGG - chr7_4:49031755-49031774 None:intergenic 10.0%
!!! ATATTGTTGTTTTTATTGAT+TGG + chr7_4:49031432-49031451 Msa1159420:intron 15.0%
!! AAAGAAAAATAAAAAATGGA+GGG - chr7_4:49031556-49031575 None:intergenic 15.0%
!! AAAAGAAAAATAAAAAATGG+AGG - chr7_4:49031557-49031576 None:intergenic 15.0%
!!! TTCTAAAACATCAAATATTT+TGG - chr7_4:49031605-49031624 None:intergenic 15.0%
!! AAACATCAAAAGATAAAAAA+CGG + chr7_4:49031801-49031820 Msa1159420:intron 15.0%
!! AAAATCTTGTAATTTATATG+TGG - chr7_4:49032486-49032505 None:intergenic 15.0%
!!! ACATATAAATTACAAGATTT+TGG + chr7_4:49032485-49032504 Msa1159420:intron 15.0%
!!! ATATACAAACACAATAATTT+TGG - chr7_4:49032701-49032720 None:intergenic 15.0%
!!! ATTTAAAATGTCTCTAAATT+AGG - chr7_4:49032779-49032798 None:intergenic 15.0%
!!! TTTATTTTTTTGTTTGTTTG+TGG + chr7_4:49033009-49033028 Msa1159420:intron 15.0%
!!! ATTTTTTATTAACTTACCAT+TGG - chr7_4:49033609-49033628 None:intergenic 15.0%
!!! AAATTTCTTTTTTTTGCAAA+TGG + chr7_4:49033734-49033753 Msa1159420:intron 15.0%
!! AAATTATCTAAAAAATTCGT+TGG - chr7_4:49035064-49035083 None:intergenic 15.0%
!! CATAGTTGTTAATTAGAAAA+AGG + chr7_4:49030901-49030920 Msa1159420:intron 20.0%
!! ACAAACAATAGCAAAAAATA+CGG - chr7_4:49031262-49031281 None:intergenic 20.0%
!! TTTGTAATTAAAACAGACAA+TGG + chr7_4:49031327-49031346 Msa1159420:intron 20.0%
!! ACCGAAAAAATTAAAATCAA+AGG + chr7_4:49031351-49031370 Msa1159420:intron 20.0%
!!! CCCTTTGATTTTAATTTTTT+CGG - chr7_4:49031355-49031374 None:intergenic 20.0%
!! CCGAAAAAATTAAAATCAAA+GGG + chr7_4:49031352-49031371 Msa1159420:intron 20.0%
!! CGAAAAAATTAAAATCAAAG+GGG + chr7_4:49031353-49031372 Msa1159420:intron 20.0%
!! GAAAAAATTAAAATCAAAGG+GGG + chr7_4:49031354-49031373 Msa1159420:intron 20.0%
!!! CATGGTTTAAATTTTGAATT+GGG + chr7_4:49031488-49031507 Msa1159420:intron 20.0%
!! ATAGAAATATTGGTATGTAT+TGG - chr7_4:49031745-49031764 None:intergenic 20.0%
!!! ATTAAAATGACTTCTTTTTC+TGG + chr7_4:49031878-49031897 Msa1159420:intron 20.0%
!!! TTATAGAACTACAAAGTTTT+AGG + chr7_4:49032286-49032305 Msa1159420:intron 20.0%
!! TAAAAGAAACCAAATTACAA+GGG + chr7_4:49032316-49032335 Msa1159420:intron 20.0%
!! AAAATGAATACAACAATTTG+TGG - chr7_4:49032524-49032543 None:intergenic 20.0%
!!! CAATAATTTTGGCAAAAAAA+CGG - chr7_4:49032690-49032709 None:intergenic 20.0%
!!! CTGTTAAATTTTATATCTTC+CGG + chr7_4:49032831-49032850 Msa1159420:intron 20.0%
!!! TGTTAGTATTATTTTGTTGT+TGG + chr7_4:49032937-49032956 Msa1159420:intron 20.0%
!!! TTTTTCTATTGATAACTCTT+CGG - chr7_4:49033313-49033332 None:intergenic 20.0%
!! TATATAGAAAGAAAGAAAGA+AGG - chr7_4:49033660-49033679 None:intergenic 20.0%
!! CAAGACAATGTAAATATAAA+AGG - chr7_4:49033775-49033794 None:intergenic 20.0%
!!! CTTTTATATTTACATTGTCT+TGG + chr7_4:49033773-49033792 Msa1159420:intron 20.0%
!!! GTTAAAGAATTATTTTCAGT+TGG + chr7_4:49034259-49034278 Msa1159420:intron 20.0%
!!! TCTAGTGAATTTTTGTTTTG+TGG + chr7_4:49030800-49030819 Msa1159420:intron 25.0%
! AACAAATTGGATACTAGAAA+AGG + chr7_4:49031302-49031321 Msa1159420:intron 25.0%
!! GCATGGTTTAAATTTTGAAT+TGG + chr7_4:49031487-49031506 Msa1159420:intron 25.0%
!!! ATGTGAGTTGATCATAAATA+AGG + chr7_4:49031709-49031728 Msa1159420:intron 25.0%
! ATCAAAAGATAAAAAACGGA+GGG + chr7_4:49031805-49031824 Msa1159420:intron 25.0%
! ATCTCTAGTCTCTATTTAAT+GGG + chr7_4:49032116-49032135 Msa1159420:intron 25.0%
! TAATTCCAATTGGAATTTCT+AGG - chr7_4:49032269-49032288 None:intergenic 25.0%
!! TGTAGTTCTATAATTCCAAT+TGG - chr7_4:49032279-49032298 None:intergenic 25.0%
!!! CTTGTAATTTGGTTTCTTTT+AGG - chr7_4:49032317-49032336 None:intergenic 25.0%
! CTAAAAGAAACCAAATTACA+AGG + chr7_4:49032315-49032334 Msa1159420:intron 25.0%
! TCATTGTATACTTTCTTTCA+AGG - chr7_4:49032606-49032625 None:intergenic 25.0%
!! AGAAAGTATACAATGATGTT+TGG + chr7_4:49032610-49032629 Msa1159420:intron 25.0%
!!! ATTTTGAGTAACTCAAACAA+AGG + chr7_4:49032861-49032880 Msa1159420:intron 25.0%
!!! TATTATTTTGTTGTTGGTGT+TGG + chr7_4:49032943-49032962 Msa1159420:intron 25.0%
! TAGAAAAAGATCGAAAACTA+AGG + chr7_4:49033325-49033344 Msa1159420:CDS 25.0%
! ATTGAAATTCTAAACTCACT+TGG + chr7_4:49033546-49033565 Msa1159420:CDS 25.0%
! AGAAAATCTTATTATCATGC+AGG + chr7_4:49033681-49033700 Msa1159420:intron 25.0%
! GAAATTTATCAGCTTCATTA+CGG - chr7_4:49033721-49033740 None:intergenic 25.0%
! GACAAAAATTATACTTCAGA+AGG - chr7_4:49033883-49033902 None:intergenic 25.0%
!!! TAAGAGATTTTTCAGAGAAT+GGG - chr7_4:49033932-49033951 None:intergenic 25.0%
!!! TTAAGAGATTTTTCAGAGAA+TGG - chr7_4:49033933-49033952 None:intergenic 25.0%
! AAAATATAAACGAAAGAGGT+CGG - chr7_4:49033975-49033994 None:intergenic 25.0%
!! ACCTCTTTCGTTTATATTTT+TGG + chr7_4:49033975-49033994 Msa1159420:intron 25.0%
! TATTCTTATACACATTTGTG+AGG - chr7_4:49034223-49034242 None:intergenic 25.0%
! TTACACGTTTCTTAAGATAT+AGG + chr7_4:49034372-49034391 Msa1159420:intron 25.0%
! ATACTTCAAGAATTCAGAAA+GGG + chr7_4:49034503-49034522 Msa1159420:CDS 25.0%
! TAATACTAATTCCCCTTAAA+AGG - chr7_4:49034805-49034824 None:intergenic 25.0%
! CTCATAATTTCTGTATTCTT+TGG + chr7_4:49035007-49035026 Msa1159420:three_prime_UTR 25.0%
TGTTGAAGAGGAAATGAAAT+TGG - chr7_4:49030486-49030505 None:intergenic 30.0%
!! TTAGTACCTTTTGCTTTTGA+CGG + chr7_4:49030720-49030739 Msa1159420:CDS 30.0%
TCAACTATTAGGTTAAGCTT+TGG + chr7_4:49030965-49030984 Msa1159420:intron 30.0%
!!! CAGTAGTTTTGAATTTTGCT+TGG + chr7_4:49030997-49031016 Msa1159420:intron 30.0%
TTGATATTGCGACAAATAGT+AGG + chr7_4:49031111-49031130 Msa1159420:intron 30.0%
TGATATTGCGACAAATAGTA+GGG + chr7_4:49031112-49031131 Msa1159420:intron 30.0%
ATCGAGAACAAGAAACAAAT+TGG + chr7_4:49031289-49031308 Msa1159420:intron 30.0%
! TTTTCAACAAGGGTAAACTT+GGG - chr7_4:49031643-49031662 None:intergenic 30.0%
!! TTTTTCAACAAGGGTAAACT+TGG - chr7_4:49031644-49031663 None:intergenic 30.0%
!! TATGGTGTGTTTTTCAACAA+GGG - chr7_4:49031653-49031672 None:intergenic 30.0%
!! TTATGGTGTGTTTTTCAACA+AGG - chr7_4:49031654-49031673 None:intergenic 30.0%
ACACACCATAAAACTATTCA+AGG + chr7_4:49031663-49031682 Msa1159420:intron 30.0%
!! CAACTCCTTGAATAGTTTTA+TGG - chr7_4:49031671-49031690 None:intergenic 30.0%
!!! TCTTTTGATGTTTTAGCTCT+TGG - chr7_4:49031794-49031813 None:intergenic 30.0%
CATCAAAAGATAAAAAACGG+AGG + chr7_4:49031804-49031823 Msa1159420:intron 30.0%
TGTTAGTAAAGAGTAGAGAA+GGG + chr7_4:49031834-49031853 Msa1159420:intron 30.0%
! GCTTGTTTGAACTTGATTTT+TGG + chr7_4:49031987-49032006 Msa1159420:intron 30.0%
CATCTCTAGTCTCTATTTAA+TGG + chr7_4:49032115-49032134 Msa1159420:intron 30.0%
AGTCTCTATTTAATGGGAAA+AGG + chr7_4:49032122-49032141 Msa1159420:intron 30.0%
! AATTGGAATTTCTAGGAGAT+TGG - chr7_4:49032262-49032281 None:intergenic 30.0%
AATCTCCTAGAAATTCCAAT+TGG + chr7_4:49032261-49032280 Msa1159420:intron 30.0%
TATATGTGGTTTCTGTCTAT+GGG - chr7_4:49032472-49032491 None:intergenic 30.0%
TTATATGTGGTTTCTGTCTA+TGG - chr7_4:49032473-49032492 None:intergenic 30.0%
AGTTCAAGTAAACTTATGGA+GGG - chr7_4:49032571-49032590 None:intergenic 30.0%
AGAGAGTTCAAGTAAACTTA+TGG - chr7_4:49032575-49032594 None:intergenic 30.0%
! GAGATACAATGATAACGATA+GGG - chr7_4:49032748-49032767 None:intergenic 30.0%
! AGAGATACAATGATAACGAT+AGG - chr7_4:49032749-49032768 None:intergenic 30.0%
GTTACTCAAAATTCAAATGC+CGG - chr7_4:49032853-49032872 None:intergenic 30.0%
ACTCAAACAAAGGAAATAGT+TGG + chr7_4:49032871-49032890 Msa1159420:intron 30.0%
CTCAAACAAAGGAAATAGTT+GGG + chr7_4:49032872-49032891 Msa1159420:intron 30.0%
! TATTGATAACTCTTCGGATA+AGG - chr7_4:49033307-49033326 None:intergenic 30.0%
AAAGATCGAAAACTAAGGAT+CGG + chr7_4:49033330-49033349 Msa1159420:CDS 30.0%
CTCTCAAAATTATCCAATAC+AGG - chr7_4:49033447-49033466 None:intergenic 30.0%
TAACTTACCATTGGATCAAA+GGG - chr7_4:49033600-49033619 None:intergenic 30.0%
TTAACTTACCATTGGATCAA+AGG - chr7_4:49033601-49033620 None:intergenic 30.0%
TACCTGTCTTTCAATATTGT+TGG + chr7_4:49033796-49033815 Msa1159420:intron 30.0%
GCCAAAAATATAAACGAAAG+AGG - chr7_4:49033979-49033998 None:intergenic 30.0%
TGTCATCTATGATTTATGCA+GGG + chr7_4:49034006-49034025 Msa1159420:intron 30.0%
ACACTATATCAAGTTTCTTC+AGG + chr7_4:49034081-49034100 Msa1159420:intron 30.0%
!! TAACAGTTAAAAGTGTTTCC+AGG - chr7_4:49034118-49034137 None:intergenic 30.0%
GATTCTGATGAATTTGAAGA+TGG + chr7_4:49034476-49034495 Msa1159420:CDS 30.0%
CATACTTCAAGAATTCAGAA+AGG + chr7_4:49034502-49034521 Msa1159420:CDS 30.0%
!!! TTCAGAAAGGGTTTTAAACT+TGG + chr7_4:49034515-49034534 Msa1159420:CDS 30.0%
TATCTATCAGTTTAATCTCC+AGG + chr7_4:49034729-49034748 Msa1159420:three_prime_UTR 30.0%
! AGATATGACTATATTTTCCC+AGG + chr7_4:49034876-49034895 Msa1159420:three_prime_UTR 30.0%
ATGAAATTGGTGGGAAATGA+GGG - chr7_4:49030473-49030492 None:intergenic 35.0%
AATGAAATTGGTGGGAAATG+AGG - chr7_4:49030474-49030493 None:intergenic 35.0%
GAAGAGGAAATGAAATTGGT+GGG - chr7_4:49030482-49030501 None:intergenic 35.0%
TGAAGAGGAAATGAAATTGG+TGG - chr7_4:49030483-49030502 None:intergenic 35.0%
CTGCTACAGAATCAACTATT+AGG + chr7_4:49030954-49030973 Msa1159420:intron 35.0%
!!! GTGTCACTTATTTTCAGACA+TGG + chr7_4:49031061-49031080 Msa1159420:intron 35.0%
CGGTATAACAACTACAATTG+TGG - chr7_4:49031155-49031174 None:intergenic 35.0%
TTGTAGTTGTTATACCGTTG+CGG + chr7_4:49031158-49031177 Msa1159420:intron 35.0%
! CAGACTGCAATTTAAAACCA+TGG + chr7_4:49031221-49031240 Msa1159420:intron 35.0%
! GGAAAACAAGTTGAAAACCA+TGG - chr7_4:49031241-49031260 None:intergenic 35.0%
!!! AAGGGGGAATTTGTTTTTTC+TGG + chr7_4:49031370-49031389 Msa1159420:intron 35.0%
ATTGGCTATCATGTAGTGTA+AGG + chr7_4:49031450-49031469 Msa1159420:intron 35.0%
ACTCACATGTGATAAGCTAA+AGG - chr7_4:49031697-49031716 None:intergenic 35.0%
CTGTTAGTAAAGAGTAGAGA+AGG + chr7_4:49031833-49031852 Msa1159420:intron 35.0%
! TTAATGGGAAAAGGCTTTGA+TGG + chr7_4:49032131-49032150 Msa1159420:intron 35.0%
TCTCTGGGTTAACTTATTAC+AGG - chr7_4:49032234-49032253 None:intergenic 35.0%
CAAGGACTTATGATGCTAAT+GGG - chr7_4:49032387-49032406 None:intergenic 35.0%
CATTAGCATCATAAGTCCTT+GGG + chr7_4:49032386-49032405 Msa1159420:intron 35.0%
ATTAGCATCATAAGTCCTTG+GGG + chr7_4:49032387-49032406 Msa1159420:intron 35.0%
GAGTTCAAGTAAACTTATGG+AGG - chr7_4:49032572-49032591 None:intergenic 35.0%
GGAAAAGATATTGAGAGAGA+TGG - chr7_4:49032669-49032688 None:intergenic 35.0%
CCAGCAAATTAACACAAACA+AGG - chr7_4:49033057-49033076 None:intergenic 35.0%
!! CCTTGTTTGTGTTAATTTGC+TGG + chr7_4:49033054-49033073 Msa1159420:intron 35.0%
GACTGAAGTAATACTATCAG+AGG - chr7_4:49033177-49033196 None:intergenic 35.0%
!! TCCATTGATGATGAGATAGT+AGG + chr7_4:49033261-49033280 Msa1159420:CDS 35.0%
ACCTACTATCTCATCATCAA+TGG - chr7_4:49033265-49033284 None:intergenic 35.0%
ATGAGATAGTAGGTCTTGAA+GGG + chr7_4:49033271-49033290 Msa1159420:CDS 35.0%
GTGCAGACTTTGACAATTAT+CGG + chr7_4:49033352-49033371 Msa1159420:CDS 35.0%
! TTGTTGGCGATCAATGTTTT+TGG + chr7_4:49033812-49033831 Msa1159420:intron 35.0%
CTGTCATCTATGATTTATGC+AGG + chr7_4:49034005-49034024 Msa1159420:intron 35.0%
GTCATCTATGATTTATGCAG+GGG + chr7_4:49034007-49034026 Msa1159420:intron 35.0%
CATTCTTAAACTCACCAAGT+TGG - chr7_4:49034162-49034181 None:intergenic 35.0%
ACTGCCTCAAATGAAACATT+TGG + chr7_4:49034322-49034341 Msa1159420:intron 35.0%
AGCACCAAATGTTTCATTTG+AGG - chr7_4:49034329-49034348 None:intergenic 35.0%
!! CAAATGAAACATTTGGTGCT+TGG + chr7_4:49034329-49034348 Msa1159420:intron 35.0%
ACTTGTACAAAACTGAATCC+AGG - chr7_4:49034708-49034727 None:intergenic 35.0%
AATCTCCAGGAACGTAATTA+TGG + chr7_4:49034742-49034761 Msa1159420:three_prime_UTR 35.0%
ATCTCCAGGAACGTAATTAT+GGG + chr7_4:49034743-49034762 Msa1159420:three_prime_UTR 35.0%
ATTCCCCTTAAAAGGAAACT+TGG - chr7_4:49034797-49034816 None:intergenic 35.0%
TTGAACAATTGCAACTCACT+CGG - chr7_4:49034923-49034942 None:intergenic 35.0%
GTTGCAATTGTTCAAGTGTT+TGG + chr7_4:49034928-49034947 Msa1159420:three_prime_UTR 35.0%
ATTGGCGAATTGTGTTGAAG+AGG - chr7_4:49030498-49030517 None:intergenic 40.0%
CATCGGAAGAAGATAAGGTA+AGG - chr7_4:49030526-49030545 None:intergenic 40.0%
CTTACCTTATCTTCTTCCGA+TGG + chr7_4:49030524-49030543 Msa1159420:exon 40.0%
! AAGGTACTAACTTGACGAAC+CGG - chr7_4:49030710-49030729 None:intergenic 40.0%
GTATCTCCGTCAAAAGCAAA+AGG - chr7_4:49030729-49030748 None:intergenic 40.0%
TCAGGTGAATCTTGAACTTG+AGG - chr7_4:49030759-49030778 None:intergenic 40.0%
TCAAGTTCAAGATTCACCTG+AGG + chr7_4:49030758-49030777 Msa1159420:CDS 40.0%
TGTAGTTGTTATACCGTTGC+GGG + chr7_4:49031159-49031178 Msa1159420:intron 40.0%
CAATCGCGGCTGTAATATAA+AGG - chr7_4:49031195-49031214 None:intergenic 40.0%
TGAATTGGGTGTAGAAGTGA+TGG + chr7_4:49031502-49031521 Msa1159420:intron 40.0%
GTCCTGTAAAGAAGACAGTT+TGG + chr7_4:49031908-49031927 Msa1159420:intron 40.0%
AGCCAAACTGTCTTCTTTAC+AGG - chr7_4:49031913-49031932 None:intergenic 40.0%
!!! TTTTTTGTCAGCTTCTCGAG+AGG - chr7_4:49032193-49032212 None:intergenic 40.0%
GGAGTTGTTCCCTTGTAATT+TGG - chr7_4:49032328-49032347 None:intergenic 40.0%
AGTGCTAAGGATTACGATTC+AGG - chr7_4:49032349-49032368 None:intergenic 40.0%
CCAAGGACTTATGATGCTAA+TGG - chr7_4:49032388-49032407 None:intergenic 40.0%
CCATTAGCATCATAAGTCCT+TGG + chr7_4:49032385-49032404 Msa1159420:intron 40.0%
TTAGCATCATAAGTCCTTGG+GGG + chr7_4:49032388-49032407 Msa1159420:intron 40.0%
TCTGTAGAGTCCTGTTGAAT+TGG - chr7_4:49033084-49033103 None:intergenic 40.0%
ATTCAACAGGACTCTACAGA+TGG + chr7_4:49033084-49033103 Msa1159420:intron 40.0%
AATACTATCAGAGGTGAAGC+AGG - chr7_4:49033168-49033187 None:intergenic 40.0%
GATGAGATAGTAGGTCTTGA+AGG + chr7_4:49033270-49033289 Msa1159420:CDS 40.0%
CGCCAACAATATTGAAAGAC+AGG - chr7_4:49033801-49033820 None:intergenic 40.0%
!!! TTGGCGATCAATGTTTTTGG+TGG + chr7_4:49033815-49033834 Msa1159420:intron 40.0%
!! AAAAGTGTTTCCAGGTCTTC+AGG - chr7_4:49034110-49034129 None:intergenic 40.0%
TCACAGAGTCGAGAAAAAGT+AGG + chr7_4:49034184-49034203 Msa1159420:intron 40.0%
ACATGAAGCAATTATGCGTG+AGG + chr7_4:49034454-49034473 Msa1159420:CDS 40.0%
GTCATTCTCTTTACTGTCCT+GGG - chr7_4:49034645-49034664 None:intergenic 40.0%
CAGGACAGTAAAGAGAATGA+CGG + chr7_4:49034644-49034663 Msa1159420:CDS 40.0%
AACACCCATAATTACGTTCC+TGG - chr7_4:49034750-49034769 None:intergenic 40.0%
! TCCTGCCAAGTTTCCTTTTA+AGG + chr7_4:49034789-49034808 Msa1159420:three_prime_UTR 40.0%
! CCTGCCAAGTTTCCTTTTAA+GGG + chr7_4:49034790-49034809 Msa1159420:three_prime_UTR 40.0%
! CTGCCAAGTTTCCTTTTAAG+GGG + chr7_4:49034791-49034810 Msa1159420:three_prime_UTR 40.0%
! CAGATTTTTATGCCCTTGCA+TGG + chr7_4:49034846-49034865 Msa1159420:three_prime_UTR 40.0%
TATCTACCAAAGCCATGCAA+GGG - chr7_4:49034861-49034880 None:intergenic 40.0%
ATATCTACCAAAGCCATGCA+AGG - chr7_4:49034862-49034881 None:intergenic 40.0%
CTTTCAGAAACATGGTACCT+GGG - chr7_4:49034896-49034915 None:intergenic 40.0%
TGAACAATTGCAACTCACTC+GGG - chr7_4:49034922-49034941 None:intergenic 40.0%
AGATAAGGTAAGGTGGCGAT+TGG - chr7_4:49030516-49030535 None:intergenic 45.0%
CGGAAGAAGATAAGGTAAGG+TGG - chr7_4:49030523-49030542 None:intergenic 45.0%
GGAGTGATTAGAAGAGGTGA+CGG - chr7_4:49030604-49030623 None:intergenic 45.0%
!! GGTTCTGGAGTGATTAGAAG+AGG - chr7_4:49030610-49030629 None:intergenic 45.0%
AAGAGGTGAAGGTCTTCTTC+TGG - chr7_4:49030655-49030674 None:intergenic 45.0%
CTTCACCTCTTAAATCCCAC+CGG + chr7_4:49030664-49030683 Msa1159420:CDS 45.0%
AGGTACTAACTTGACGAACC+GGG - chr7_4:49030709-49030728 None:intergenic 45.0%
! ATCTTGAACTTGAGGTGCCT+CGG - chr7_4:49030751-49030770 None:intergenic 45.0%
TCAAGATTCACCTGAGGTTC+AGG + chr7_4:49030764-49030783 Msa1159420:CDS 45.0%
GTAGTTGTTATACCGTTGCG+GGG + chr7_4:49031160-49031179 Msa1159420:intron 45.0%
TAGTTGTTATACCGTTGCGG+GGG + chr7_4:49031161-49031180 Msa1159420:intron 45.0%
AGGTGTCTGAGAGAAATGCA+TGG + chr7_4:49031470-49031489 Msa1159420:intron 45.0%
ATTGGGTGTAGAAGTGATGG+AGG + chr7_4:49031505-49031524 Msa1159420:intron 45.0%
! TTGGGTGTAGAAGTGATGGA+GGG + chr7_4:49031506-49031525 Msa1159420:intron 45.0%
! GTGATGGAGGGTAGAATCTA+AGG + chr7_4:49031518-49031537 Msa1159420:intron 45.0%
! TGGAGGGTAGAATCTAAGGT+AGG + chr7_4:49031522-49031541 Msa1159420:intron 45.0%
AGCTCTTGGCACAAGTCTTA+AGG - chr7_4:49031780-49031799 None:intergenic 45.0%
GTAAAGAGTAGAGAAGGGTC+TGG + chr7_4:49031839-49031858 Msa1159420:intron 45.0%
CAAACAAGCGTGCACTACAT+TGG - chr7_4:49031976-49031995 None:intergenic 45.0%
!! AGGAGATTGGAAGCATCTCT+GGG - chr7_4:49032249-49032268 None:intergenic 45.0%
!! TAGGAGATTGGAAGCATCTC+TGG - chr7_4:49032250-49032269 None:intergenic 45.0%
!! GGCGTTGGTAATAAGTGCTA+AGG - chr7_4:49032362-49032381 None:intergenic 45.0%
! GACTTATGATGCTAATGGGC+TGG - chr7_4:49032383-49032402 None:intergenic 45.0%
AGGGAGAGTAGCAGATATAG+TGG - chr7_4:49032552-49032571 None:intergenic 45.0%
TGCTGGTACACCAATTCAAC+AGG + chr7_4:49033071-49033090 Msa1159420:intron 45.0%
TGCAGTCAAAGTTGCTGAGT+TGG + chr7_4:49033224-49033243 Msa1159420:CDS 45.0%
CATTTGTGACCAGTGAAAGG+CGG - chr7_4:49033395-49033414 None:intergenic 45.0%
GAGCATTTGTGACCAGTGAA+AGG - chr7_4:49033398-49033417 None:intergenic 45.0%
TCACTGGTCACAAATGCTCA+AGG + chr7_4:49033399-49033418 Msa1159420:CDS 45.0%
CACTGGTCACAAATGCTCAA+GGG + chr7_4:49033400-49033419 Msa1159420:CDS 45.0%
ACTGGTCACAAATGCTCAAG+GGG + chr7_4:49033401-49033420 Msa1159420:CDS 45.0%
AAATGCTCAAGGGGAAGTTG+TGG + chr7_4:49033410-49033429 Msa1159420:CDS 45.0%
!! GGAGAGTTTGTTGCCTGTAT+TGG + chr7_4:49033431-49033450 Msa1159420:CDS 45.0%
GAGAGCTAAAGCTCAGATCA+AGG + chr7_4:49033464-49033483 Msa1159420:CDS 45.0%
AGCTAAAGCTCAGATCAAGG+TGG + chr7_4:49033467-49033486 Msa1159420:CDS 45.0%
TGGAAGTCCCTTTGATCCAA+TGG + chr7_4:49033590-49033609 Msa1159420:CDS 45.0%
CGATTGAATTTCGAGCCAAC+TGG - chr7_4:49034039-49034058 None:intergenic 45.0%
TCGATTGTTTCGAGCCAACT+TGG + chr7_4:49034145-49034164 Msa1159420:intron 45.0%
! TTCATTTGAGGCAGTAGCTG+AGG - chr7_4:49034317-49034336 None:intergenic 45.0%
! TCACCATTGATGGACGTAAG+AGG - chr7_4:49034547-49034566 None:intergenic 45.0%
CTTACGTCCATCAATGGTGA+AGG + chr7_4:49034547-49034566 Msa1159420:CDS 45.0%
GCTGATACCTTCACCATTGA+TGG - chr7_4:49034557-49034576 None:intergenic 45.0%
!! TCAATGGTGAAGGTATCAGC+TGG + chr7_4:49034557-49034576 Msa1159420:CDS 45.0%
!! TTGGTGACTTGTTCTTCCTG+TGG - chr7_4:49034614-49034633 None:intergenic 45.0%
AGTCACCAATGAAACTTCCC+AGG + chr7_4:49034625-49034644 Msa1159420:CDS 45.0%
ACTGTCCTGGGAAGTTTCAT+TGG - chr7_4:49034633-49034652 None:intergenic 45.0%
CGTCATTCTCTTTACTGTCC+TGG - chr7_4:49034646-49034665 None:intergenic 45.0%
AGAAACAGAGTCCGCTTGAA+AGG + chr7_4:49034673-49034692 Msa1159420:exon 45.0%
GGCAAAGTTGTCCTTTCAAG+CGG - chr7_4:49034687-49034706 None:intergenic 45.0%
CTTGAAAGGACAACTTTGCC+TGG + chr7_4:49034687-49034706 Msa1159420:exon 45.0%
CCCTTAAAAGGAAACTTGGC+AGG - chr7_4:49034793-49034812 None:intergenic 45.0%
TTTATGCCCTTGCATGGCTT+TGG + chr7_4:49034852-49034871 Msa1159420:three_prime_UTR 45.0%
CCTTTCAGAAACATGGTACC+TGG - chr7_4:49034897-49034916 None:intergenic 45.0%
! CCAGGTACCATGTTTCTGAA+AGG + chr7_4:49034894-49034913 Msa1159420:three_prime_UTR 45.0%
GAACAATTGCAACTCACTCG+GGG - chr7_4:49034921-49034940 None:intergenic 45.0%
TTGTTCAAGTGTTTGGCACC+TGG + chr7_4:49034935-49034954 Msa1159420:three_prime_UTR 45.0%
!! ACACTGATTCTCCTAACTCC+AGG - chr7_4:49034956-49034975 None:intergenic 45.0%
GTGGCCATCGGAAGAAGATA+AGG - chr7_4:49030531-49030550 None:intergenic 50.0%
! GTGATTAGAAGAGGTGACGG+CGG - chr7_4:49030601-49030620 None:intergenic 50.0%
! TCTTCTTCTGGAGGATGCGA+CGG - chr7_4:49030643-49030662 None:intergenic 50.0%
AGGTGAAGGTCTTCTTCTGG+AGG - chr7_4:49030652-49030671 None:intergenic 50.0%
CGGTGGGATTTAAGAGGTGA+AGG - chr7_4:49030666-49030685 None:intergenic 50.0%
! CCTCTTAAATCCCACCGGTT+CGG + chr7_4:49030669-49030688 Msa1159420:CDS 50.0%
GAGTGGGAATTGAACCGAAC+CGG - chr7_4:49030686-49030705 None:intergenic 50.0%
GGTACTAACTTGACGAACCG+GGG - chr7_4:49030708-49030727 None:intergenic 50.0%
! TGCTTTTGACGGAGATACCG+AGG + chr7_4:49030731-49030750 Msa1159420:CDS 50.0%
! TTCACCTGAGGTTCAGGTTC+TGG + chr7_4:49030770-49030789 Msa1159420:CDS 50.0%
CTTACCAGAACCTGAACCTC+AGG - chr7_4:49030777-49030796 None:intergenic 50.0%
!!! AGGTTTTAGATCCCCCGCAA+CGG - chr7_4:49031175-49031194 None:intergenic 50.0%
AAGAGTAGAGAAGGGTCTGG+CGG + chr7_4:49031842-49031861 Msa1159420:intron 50.0%
TGCACTACATTGGACGGTCA+TGG - chr7_4:49031966-49031985 None:intergenic 50.0%
CAAGCGTGCACTACATTGGA+CGG - chr7_4:49031972-49031991 None:intergenic 50.0%
CTAGTACTTGTAAGCCCCCA+AGG - chr7_4:49032405-49032424 None:intergenic 50.0%
!! TACAGATGGTGCTGCTGATG+TGG + chr7_4:49033098-49033117 Msa1159420:CDS 50.0%
CAGTGAAAGGCGGTCTCTAT+CGG - chr7_4:49033385-49033404 None:intergenic 50.0%
TCAGATCAAGGTGGAGACAG+AGG + chr7_4:49033476-49033495 Msa1159420:CDS 50.0%
CAGATCAAGGTGGAGACAGA+GGG + chr7_4:49033477-49033496 Msa1159420:CDS 50.0%
TGGAGTTGAGCCAGTGGATA+CGG + chr7_4:49033566-49033585 Msa1159420:CDS 50.0%
! CTTCAGGTTTCCTGAAGACC+TGG + chr7_4:49034097-49034116 Msa1159420:intron 50.0%
! CCATTGATGGACGTAAGAGG+CGG - chr7_4:49034544-49034563 None:intergenic 50.0%
TCCTGTGGTACTTCTTGCTC+CGG - chr7_4:49034599-49034618 None:intergenic 50.0%
TCGGGGTCCTTTCAGAAACA+TGG - chr7_4:49034904-49034923 None:intergenic 50.0%
AGTGTTTGGCACCTGGAGTT+AGG + chr7_4:49034942-49034961 Msa1159420:three_prime_UTR 50.0%
GAATGTGGGAGTTCGGAGGA+CGG - chr7_4:49030553-49030572 None:intergenic 55.0%
TCCTCCGAACTCCCACATTC+CGG + chr7_4:49030553-49030572 Msa1159420:CDS 55.0%
ATGGCCGGAATGTGGGAGTT+CGG - chr7_4:49030560-49030579 None:intergenic 55.0%
! ATTAGAAGAGGTGACGGCGG+TGG - chr7_4:49030598-49030617 None:intergenic 55.0%
CCGAACCGGTGGGATTTAAG+AGG - chr7_4:49030672-49030691 None:intergenic 55.0%
GGGAATTGAACCGAACCGGT+GGG - chr7_4:49030682-49030701 None:intergenic 55.0%
TGGGAATTGAACCGAACCGG+TGG - chr7_4:49030683-49030702 None:intergenic 55.0%
TCGGTTCAATTCCCACTCCC+CGG + chr7_4:49030688-49030707 Msa1159420:CDS 55.0%
AACTTGACGAACCGGGGAGT+GGG - chr7_4:49030702-49030721 None:intergenic 55.0%
TAACTTGACGAACCGGGGAG+TGG - chr7_4:49030703-49030722 None:intergenic 55.0%
GCAGTCTGCAACTGCAATCG+CGG - chr7_4:49031209-49031228 None:intergenic 55.0%
GGACGGTCATGGAGTCTGAA+AGG - chr7_4:49031955-49031974 None:intergenic 55.0%
!! TGATGCTAATGGGCTGGCGT+TGG - chr7_4:49032377-49032396 None:intergenic 55.0%
!! AGATGGTGCTGCTGATGTGG+AGG + chr7_4:49033101-49033120 Msa1159420:CDS 55.0%
! GCTGATGTGGAGGAGAGTAC+AGG + chr7_4:49033111-49033130 Msa1159420:CDS 55.0%
! GGAGAGTACAGGCGATGATG+AGG + chr7_4:49033122-49033141 Msa1159420:CDS 55.0%
CGATAGAGACCGCCTTTCAC+TGG + chr7_4:49033383-49033402 Msa1159420:CDS 55.0%
CTCACTTGGAGTTGAGCCAG+TGG + chr7_4:49033560-49033579 Msa1159420:CDS 55.0%
GTTGAGCCAGTGGATACGGT+TGG + chr7_4:49033570-49033589 Msa1159420:CDS 55.0%
GGACTTCCAACCGTATCCAC+TGG - chr7_4:49033579-49033598 None:intergenic 55.0%
CCGCCTCTTACGTCCATCAA+TGG + chr7_4:49034541-49034560 Msa1159420:CDS 55.0%
!! GTGAAGGTATCAGCTGGTCC+AGG + chr7_4:49034563-49034582 Msa1159420:CDS 55.0%
ACTTCTTGCTCCGGCTTTGC+AGG - chr7_4:49034590-49034609 None:intergenic 55.0%
GTTGGGGATGGCCGGAATGT+GGG - chr7_4:49030567-49030586 None:intergenic 60.0%
TGAGAAGGGTTGGGGATGGC+CGG - chr7_4:49030575-49030594 None:intergenic 60.0%
GTGGTGAGAAGGGTTGGGGA+TGG - chr7_4:49030579-49030598 None:intergenic 60.0%
GACGGAAACGCGTGAGGTTC+TGG - chr7_4:49030625-49030644 None:intergenic 60.0%
GATGATGAGGTCAGCGACGC+TGG + chr7_4:49033135-49033154 Msa1159420:CDS 60.0%
CAAGGTGGAGACAGAGGGAG+AGG + chr7_4:49033482-49033501 Msa1159420:CDS 60.0%
! ATGCAGGGGCGCAAACCAGT+TGG + chr7_4:49034021-49034040 Msa1159420:intron 60.0%
TGGTCCAGGACCTGCAAAGC+CGG + chr7_4:49034577-49034596 Msa1159420:CDS 60.0%
!! GCCGGAGCAAGAAGTACCAC+AGG + chr7_4:49034595-49034614 Msa1159420:CDS 60.0%
GTTCGGAGGACGGTGGCCAT+CGG - chr7_4:49030543-49030562 None:intergenic 65.0%
TGTGGGAGTTCGGAGGACGG+TGG - chr7_4:49030550-49030569 None:intergenic 65.0%
GCCGGAATGTGGGAGTTCGG+AGG - chr7_4:49030557-49030576 None:intergenic 65.0%
GGTTGGGGATGGCCGGAATG+TGG - chr7_4:49030568-49030587 None:intergenic 65.0%
GGCGGTGGTGAGAAGGGTTG+GGG - chr7_4:49030583-49030602 None:intergenic 65.0%
CGGCGGTGGTGAGAAGGGTT+GGG - chr7_4:49030584-49030603 None:intergenic 65.0%
ACGGCGGTGGTGAGAAGGGT+TGG - chr7_4:49030585-49030604 None:intergenic 65.0%
! GGTGACGGCGGTGGTGAGAA+GGG - chr7_4:49030589-49030608 None:intergenic 65.0%
! AGGTGACGGCGGTGGTGAGA+AGG - chr7_4:49030590-49030609 None:intergenic 65.0%
GGATGCGACGGAAACGCGTG+AGG - chr7_4:49030631-49030650 None:intergenic 65.0%
TGCTCCGGCTTTGCAGGTCC+TGG - chr7_4:49034584-49034603 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 49030469 49035116 49030469 ID=Msa1159420;Name=Msa1159420
chr7_4 mRNA 49030469 49035116 49030469 ID=Msa1159420-mRNA-1;Parent=Msa1159420;Name=Msa1159420-mRNA-1;_AED=0.10;_eAED=0.10;_QI=74|0.66|0.75|1|1|1|4|425|357
chr7_4 exon 49030469 49030791 49030469 ID=Msa1159420-mRNA-1:exon:13372;Parent=Msa1159420-mRNA-1
chr7_4 exon 49033093 49033611 49033093 ID=Msa1159420-mRNA-1:exon:13373;Parent=Msa1159420-mRNA-1
chr7_4 exon 49034027 49034092 49034027 ID=Msa1159420-mRNA-1:exon:13374;Parent=Msa1159420-mRNA-1
chr7_4 exon 49034452 49035116 49034452 ID=Msa1159420-mRNA-1:exon:13375;Parent=Msa1159420-mRNA-1
chr7_4 five_prime_UTR 49030469 49030542 49030469 ID=Msa1159420-mRNA-1:five_prime_utr;Parent=Msa1159420-mRNA-1
chr7_4 CDS 49030543 49030791 49030543 ID=Msa1159420-mRNA-1:cds;Parent=Msa1159420-mRNA-1
chr7_4 CDS 49033093 49033611 49033093 ID=Msa1159420-mRNA-1:cds;Parent=Msa1159420-mRNA-1
chr7_4 CDS 49034027 49034092 49034027 ID=Msa1159420-mRNA-1:cds;Parent=Msa1159420-mRNA-1
chr7_4 CDS 49034452 49034691 49034452 ID=Msa1159420-mRNA-1:cds;Parent=Msa1159420-mRNA-1
chr7_4 three_prime_UTR 49034692 49035116 49034692 ID=Msa1159420-mRNA-1:three_prime_utr;Parent=Msa1159420-mRNA-1
Gene Sequence

>Msa1159420

ATGGCCACCGTCCTCCGAACTCCCACATTCCGGCCATCCCCAACCCTTCTCACCACCGCCGTCACCTCTTCTAATCACTCCAGAACCTCACGCGTTTCCGTCGCATCCTCCAGAAGAAGACCTTCACCTCTTAAATCCCACCGGTTCGGTTCAATTCCCACTCCCCGGTTCGTCAAGTTAGTACCTTTTGCTTTTGACGGAGATACCGAGGCACCTCAAGTTCAAGATTCACCTGAGGTTCAGGTTCTGGACTCTACAGATGGTGCTGCTGATGTGGAGGAGAGTACAGGCGATGATGAGGTCAGCGACGCTGGTGAAATACCTGCTTCACCTCTGATAGTATTACTTCAGTCATACAAAGAAGCATTAGCTAATAATGATGCAGTCAAAGTTGCTGAGTTGGAATCATCATTAAAATCCATTGATGATGAGATAGTAGGTCTTGAAGGGAAAATAGCTTCCTTATCCGAAGAGTTATCAATAGAAAAAGATCGAAAACTAAGGATCGGTGCAGACTTTGACAATTATCGGAAGAGAACCGATAGAGACCGCCTTTCACTGGTCACAAATGCTCAAGGGGAAGTTGTGGAGAGTTTGTTGCCTGTATTGGATAATTTTGAGAGAGCTAAAGCTCAGATCAAGGTGGAGACAGAGGGAGAGGAGAAAATAAACAACAGCTATCAAAGCATATATAAGCAGTTCATTGAAATTCTAAACTCACTTGGAGTTGAGCCAGTGGATACGGTTGGAAGTCCCTTTGATCCAATGGGGCGCAAACCAGTTGGCTCGAAATTCAATCGTGTACTTGCTGAACTTTTTCAAACACTATATCAACTACATGAAGCAATTATGCGTGAGGATTCTGATGAATTTGAAGATGGCATCATACTTCAAGAATTCAGAAAGGGTTTTAAACTTGGTGACCGCCTCTTACGTCCATCAATGGTGAAGGTATCAGCTGGTCCAGGACCTGCAAAGCCGGAGCAAGAAGTACCACAGGAAGAACAAGTCACCAATGAAACTTCCCAGGACAGTAAAGAGAATGACGGCAACACAGAAACAGAGTCCGCTTGA

Protein sequence

>Msa1159420

MATVLRTPTFRPSPTLLTTAVTSSNHSRTSRVSVASSRRRPSPLKSHRFGSIPTPRFVKLVPFAFDGDTEAPQVQDSPEVQVLDSTDGAADVEESTGDDEVSDAGEIPASPLIVLLQSYKEALANNDAVKVAELESSLKSIDDEIVGLEGKIASLSEELSIEKDRKLRIGADFDNYRKRTDRDRLSLVTNAQGEVVESLLPVLDNFERAKAQIKVETEGEEKINNSYQSIYKQFIEILNSLGVEPVDTVGSPFDPMGRKPVGSKFNRVLAELFQTLYQLHEAIMREDSDEFEDGIILQEFRKGFKLGDRLLRPSMVKVSAGPGPAKPEQEVPQEEQVTNETSQDSKENDGNTETESA*