AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0318280


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0318280 MtrunA17_Chr2g0291941 87.054 224 3 2 1 198 1 224 2.95e-135 379
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0318280 AT1G31330.1 62.946 224 54 4 1 198 1 221 1.87e-90 265

Find 55 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAGGAGAGCAGTGATTTA+AGG 0.194516 2_4:-16815207 None:intergenic
TCTTAGGGTTGAGGTGGGTT+TGG 0.281147 2_4:+16816885 None:intergenic
TTTGGTTTATGAGGTAGTTT+TGG 0.294416 2_4:+16816862 None:intergenic
ATGATGTTGGTTGAGAGTTT+TGG 0.311230 2_4:+16816844 None:intergenic
TGTTCCACTTGCTTCTAGAT+TGG 0.359779 2_4:-16816338 Msa0318280:CDS
AAGAGAAGGTTTGATAACTA+TGG 0.369761 2_4:-16816556 Msa0318280:CDS
TTGTATATTGCTGGTTGGAT+TGG 0.374422 2_4:-16816433 Msa0318280:CDS
GTGGGTTTGGAGAGGTTAGT+TGG 0.391367 2_4:+16816898 None:intergenic
GTTGGATTGGGTGGGTTGGT+AGG 0.393102 2_4:-16816420 Msa0318280:CDS
CAAGGAGAGCAGTGATTTAA+GGG 0.397162 2_4:-16815206 None:intergenic
TGTATATTGCTGGTTGGATT+GGG 0.400227 2_4:-16816432 Msa0318280:CDS
GCTGGTTGGATTGGGTGGGT+TGG 0.407168 2_4:-16816424 Msa0318280:CDS
GCCAGCGCTGGAGCGCTGTC+CGG 0.413463 2_4:+16816604 None:intergenic
TTTGGTCTTAGGGTTGAGGT+GGG 0.434939 2_4:+16816880 None:intergenic
ATAATAATCTCTTTCTGAGT+AGG 0.435495 2_4:+16816364 None:intergenic
TATTGCTGGTTGGATTGGGT+GGG 0.438882 2_4:-16816428 Msa0318280:CDS
ATAGTTATCAAACCTTCTCT+TGG 0.439023 2_4:+16816558 None:intergenic
GGGTGAAGCTTATTAATTTG+TGG 0.449217 2_4:+16815281 None:intergenic
TCCGGACAGCGCTCCAGCGC+TGG 0.451381 2_4:-16816605 Msa0318280:CDS
ATATTGCTGGTTGGATTGGG+TGG 0.459491 2_4:-16816429 Msa0318280:CDS
TAGATTTGAGTTTACATCGT+TGG 0.460617 2_4:+16816792 None:intergenic
AACTCTCTGTAAGCAGCAAT+AGG 0.463985 2_4:+16816295 None:intergenic
GAATGGTGATCAAAGACATT+GGG 0.484178 2_4:-16816485 Msa0318280:CDS
TTGTTGACTCATTGTGTGGA+TGG 0.485766 2_4:-16815471 Msa0318280:CDS
GGTTTGTTGTGTGGTGCTGA+TGG 0.487070 2_4:-16816526 Msa0318280:CDS
GGGTTGAGGTGGGTTTGGAG+AGG 0.489158 2_4:+16816890 None:intergenic
ATCCCTCAAGCTTTATGCTC+CGG 0.499000 2_4:-16816623 Msa0318280:CDS
TCAATCAACTTCATATACTT+AGG 0.501017 2_4:+16815328 None:intergenic
TGTGCTGCAGTGGATGATGT+TGG 0.507380 2_4:+16816831 None:intergenic
AAAAGAAACTTAGACATCCT+TGG 0.511183 2_4:+16816252 None:intergenic
TTTGATAACTATGGAAAGCA+AGG 0.512706 2_4:-16816547 Msa0318280:CDS
TTACCACATTTGATAGTGAA+TGG 0.520029 2_4:-16816502 Msa0318280:CDS
TTTGAGTTTACATCGTTGGT+TGG 0.526095 2_4:+16816796 None:intergenic
TTTATTGTTGACTCATTGTG+TGG 0.527806 2_4:-16815475 Msa0318280:CDS
ATGTCGGCGACAGCGGGGAG+TGG 0.529776 2_4:+16816721 None:intergenic
TTTCTTGGTTTGTGCTGCAG+TGG 0.533687 2_4:+16816821 None:intergenic
ATGATATTGATCAAGGATGC+AGG 0.533903 2_4:-16815524 Msa0318280:CDS
AGAGAGGATGATATTGATCA+AGG 0.536833 2_4:-16815531 Msa0318280:CDS
GTCCGGAGCATAAAGCTTGA+GGG 0.543561 2_4:+16816621 None:intergenic
GAAGCTTATTAATTTGTGGA+AGG 0.551262 2_4:+16815285 None:intergenic
GCAGGAAGGGTGATTATGAG+AGG 0.553668 2_4:-16815506 Msa0318280:CDS
GGAAGGGTGATTATGAGAGG+AGG 0.563183 2_4:-16815503 Msa0318280:CDS
TGTCCGGAGCATAAAGCTTG+AGG 0.578321 2_4:+16816620 None:intergenic
GCTTACAGAGAGTTGTTGAA+TGG 0.589659 2_4:-16816286 Msa0318280:CDS
TGAATGGTGATCAAAGACAT+TGG 0.591211 2_4:-16816486 Msa0318280:CDS
AAAACCAATCTAGAAGCAAG+TGG 0.593997 2_4:+16816334 None:intergenic
ATTGATCAAGGATGCAGGAA+GGG 0.594187 2_4:-16815519 Msa0318280:CDS
CGGGGAGTGGTGATGAGATG+AGG 0.601172 2_4:+16816734 None:intergenic
CAGTTGAGAAAACCAAGAGA+AGG 0.621236 2_4:-16816570 Msa0318280:CDS
TATTGATCAAGGATGCAGGA+AGG 0.633297 2_4:-16815520 Msa0318280:CDS
GAAGGGTGATTATGAGAGGA+GGG 0.659997 2_4:-16815502 Msa0318280:CDS
GGAAAGCAAGGTTTGTTGTG+TGG 0.661769 2_4:-16816535 Msa0318280:CDS
TCACCATTCACTATCAAATG+TGG 0.665222 2_4:+16816499 None:intergenic
GAATGGTGAACTCATTGCCA+AGG 0.676808 2_4:-16816269 Msa0318280:CDS
AATGGTGATCAAAGACATTG+GGG 0.721922 2_4:-16816484 Msa0318280:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATGAAATTTTGTTATTTTT+AGG - chr2_4:16816500-16816519 Msa0318280:CDS 10.0%
!!! AATGAAATTTTGTTATTTTT+AGG - chr2_4:16816500-16816519 Msa0318280:CDS 10.0%
!!! TTTGAAATATCAATAATGTA+AGG + chr2_4:16816036-16816055 None:intergenic 15.0%
!!! TGAAATTAAATTGGTAATAT+TGG - chr2_4:16816118-16816137 Msa0318280:intron 15.0%
!!! GAAATTAAATTGGTAATATT+GGG - chr2_4:16816119-16816138 Msa0318280:intron 15.0%
!!! AAATTAAATTGGTAATATTG+GGG - chr2_4:16816120-16816139 Msa0318280:intron 15.0%
!! GAATTAAAAATTTCATTGAA+TGG + chr2_4:16816405-16816424 None:intergenic 15.0%
!!! TTTGAAATATCAATAATGTA+AGG + chr2_4:16816036-16816055 None:intergenic 15.0%
!!! TGAAATTAAATTGGTAATAT+TGG - chr2_4:16816118-16816137 Msa0318280:intron 15.0%
!!! GAAATTAAATTGGTAATATT+GGG - chr2_4:16816119-16816138 Msa0318280:intron 15.0%
!!! AAATTAAATTGGTAATATTG+GGG - chr2_4:16816120-16816139 Msa0318280:intron 15.0%
!! GAATTAAAAATTTCATTGAA+TGG + chr2_4:16816405-16816424 None:intergenic 15.0%
!!! ATATTGTTTTTGTATATTGC+TGG - chr2_4:16815679-16815698 Msa0318280:intron 20.0%
!!! AGTTTCTTTTGTTTTCAAAA+AGG - chr2_4:16815882-16815901 Msa0318280:intron 20.0%
!! ATACTACAATTTAACCAATA+AGG + chr2_4:16815999-16816018 None:intergenic 20.0%
!! GGACTAAAATGAAATTAAAT+TGG - chr2_4:16816109-16816128 Msa0318280:intron 20.0%
!!! TTGATTAACATTTTGCAATT+AGG - chr2_4:16816209-16816228 Msa0318280:intron 20.0%
!! CAATTAGGTTTCAAAAATTA+TGG - chr2_4:16816224-16816243 Msa0318280:intron 20.0%
!! AAACATAAACTAATGTATGT+GGG - chr2_4:16816459-16816478 Msa0318280:intron 20.0%
!! TCATGAAGAAAAAAATGAAA+GGG + chr2_4:16816863-16816882 None:intergenic 20.0%
!! TTCATGAAGAAAAAAATGAA+AGG + chr2_4:16816864-16816883 None:intergenic 20.0%
!!! CATTTTTTTCTTCATGAAAA+TGG - chr2_4:16816866-16816885 Msa0318280:CDS 20.0%
!!! ATATTGTTTTTGTATATTGC+TGG - chr2_4:16815679-16815698 Msa0318280:intron 20.0%
!!! AGTTTCTTTTGTTTTCAAAA+AGG - chr2_4:16815882-16815901 Msa0318280:intron 20.0%
!! ATACTACAATTTAACCAATA+AGG + chr2_4:16815999-16816018 None:intergenic 20.0%
!! GGACTAAAATGAAATTAAAT+TGG - chr2_4:16816109-16816128 Msa0318280:intron 20.0%
!!! TTGATTAACATTTTGCAATT+AGG - chr2_4:16816209-16816228 Msa0318280:intron 20.0%
!! CAATTAGGTTTCAAAAATTA+TGG - chr2_4:16816224-16816243 Msa0318280:intron 20.0%
!! AAACATAAACTAATGTATGT+GGG - chr2_4:16816459-16816478 Msa0318280:intron 20.0%
!! TCATGAAGAAAAAAATGAAA+GGG + chr2_4:16816863-16816882 None:intergenic 20.0%
!! TTCATGAAGAAAAAAATGAA+AGG + chr2_4:16816864-16816883 None:intergenic 20.0%
!!! CATTTTTTTCTTCATGAAAA+TGG - chr2_4:16816866-16816885 Msa0318280:CDS 20.0%
! ATATACAAAAACAATATCCC+TGG + chr2_4:16815676-16815695 None:intergenic 25.0%
! ATAATAATCTCTTTCTGAGT+AGG + chr2_4:16815760-16815779 None:intergenic 25.0%
! GATTGAGTAAATATCCTTAT+TGG - chr2_4:16815982-16816001 Msa0318280:intron 25.0%
! TTTAGTCCTTCAAATACTAA+AGG + chr2_4:16816097-16816116 None:intergenic 25.0%
! TTTGTAACCAATCTAATTAG+AGG - chr2_4:16816180-16816199 Msa0318280:intron 25.0%
! AGTTTCAAATAACTTAGATG+TGG + chr2_4:16816348-16816367 None:intergenic 25.0%
! CAAACATAAACTAATGTATG+TGG - chr2_4:16816458-16816477 Msa0318280:intron 25.0%
!!! TGTTGGTTTTTTGTTGTTTA+TGG - chr2_4:16816554-16816573 Msa0318280:CDS 25.0%
! TCAATCAACTTCATATACTT+AGG + chr2_4:16816796-16816815 None:intergenic 25.0%
! ATATACAAAAACAATATCCC+TGG + chr2_4:16815676-16815695 None:intergenic 25.0%
! ATAATAATCTCTTTCTGAGT+AGG + chr2_4:16815760-16815779 None:intergenic 25.0%
! GATTGAGTAAATATCCTTAT+TGG - chr2_4:16815982-16816001 Msa0318280:intron 25.0%
! TTTAGTCCTTCAAATACTAA+AGG + chr2_4:16816097-16816116 None:intergenic 25.0%
! TTTGTAACCAATCTAATTAG+AGG - chr2_4:16816180-16816199 Msa0318280:intron 25.0%
! AGTTTCAAATAACTTAGATG+TGG + chr2_4:16816348-16816367 None:intergenic 25.0%
! CAAACATAAACTAATGTATG+TGG - chr2_4:16816458-16816477 Msa0318280:intron 25.0%
!!! TGTTGGTTTTTTGTTGTTTA+TGG - chr2_4:16816554-16816573 Msa0318280:CDS 25.0%
! TCAATCAACTTCATATACTT+AGG + chr2_4:16816796-16816815 None:intergenic 25.0%
!! TTTGGTTTATGAGGTAGTTT+TGG + chr2_4:16815262-16815281 None:intergenic 30.0%
! TAGATTTGAGTTTACATCGT+TGG + chr2_4:16815332-16815351 None:intergenic 30.0%
!!! AATTGTTTTGATTCTCTGCA+TGG + chr2_4:16815439-16815458 None:intergenic 30.0%
!!! TTTCTCAACTGTTGCTTTTA+TGG + chr2_4:16815542-16815561 None:intergenic 30.0%
ATAGTTATCAAACCTTCTCT+TGG + chr2_4:16815566-16815585 None:intergenic 30.0%
! AAGAGAAGGTTTGATAACTA+TGG - chr2_4:16815565-16815584 Msa0318280:intron 30.0%
! TTTGATAACTATGGAAAGCA+AGG - chr2_4:16815574-16815593 Msa0318280:intron 30.0%
!! TTACCACATTTGATAGTGAA+TGG - chr2_4:16815619-16815638 Msa0318280:intron 30.0%
!! TGTTTTTGTATATTGCTGGT+TGG - chr2_4:16815683-16815702 Msa0318280:intron 30.0%
!!! CTTCTAGATTGGTTTTTAGA+GGG - chr2_4:16815794-16815813 Msa0318280:intron 30.0%
AAAAGAAACTTAGACATCCT+TGG + chr2_4:16815872-16815891 None:intergenic 30.0%
TACGGATTCGATTCAAATAT+TGG + chr2_4:16816074-16816093 None:intergenic 30.0%
TCCTTCAAATACTAAAGGTA+CGG + chr2_4:16816092-16816111 None:intergenic 30.0%
AATTCGTCCTCTAATTAGAT+TGG + chr2_4:16816190-16816209 None:intergenic 30.0%
TCTTACAAAACGAATTTGTG+AGG + chr2_4:16816314-16816333 None:intergenic 30.0%
!! TTTATTGTTGACTCATTGTG+TGG - chr2_4:16816646-16816665 Msa0318280:CDS 30.0%
!!! GTTCCTTTTTTACTCAAATG+TGG - chr2_4:16816759-16816778 Msa0318280:CDS 30.0%
AGTCCACATTTGAGTAAAAA+AGG + chr2_4:16816765-16816784 None:intergenic 30.0%
! TTTTTACTCAAATGTGGACT+TGG - chr2_4:16816765-16816784 Msa0318280:CDS 30.0%
!! GAAGCTTATTAATTTGTGGA+AGG + chr2_4:16816839-16816858 None:intergenic 30.0%
!! TTTGGTTTATGAGGTAGTTT+TGG + chr2_4:16815262-16815281 None:intergenic 30.0%
! TAGATTTGAGTTTACATCGT+TGG + chr2_4:16815332-16815351 None:intergenic 30.0%
!!! AATTGTTTTGATTCTCTGCA+TGG + chr2_4:16815439-16815458 None:intergenic 30.0%
!!! TTTCTCAACTGTTGCTTTTA+TGG + chr2_4:16815542-16815561 None:intergenic 30.0%
ATAGTTATCAAACCTTCTCT+TGG + chr2_4:16815566-16815585 None:intergenic 30.0%
! AAGAGAAGGTTTGATAACTA+TGG - chr2_4:16815565-16815584 Msa0318280:intron 30.0%
! TTTGATAACTATGGAAAGCA+AGG - chr2_4:16815574-16815593 Msa0318280:intron 30.0%
!! TTACCACATTTGATAGTGAA+TGG - chr2_4:16815619-16815638 Msa0318280:intron 30.0%
!! TGTTTTTGTATATTGCTGGT+TGG - chr2_4:16815683-16815702 Msa0318280:intron 30.0%
!!! CTTCTAGATTGGTTTTTAGA+GGG - chr2_4:16815794-16815813 Msa0318280:intron 30.0%
AAAAGAAACTTAGACATCCT+TGG + chr2_4:16815872-16815891 None:intergenic 30.0%
TACGGATTCGATTCAAATAT+TGG + chr2_4:16816074-16816093 None:intergenic 30.0%
TCCTTCAAATACTAAAGGTA+CGG + chr2_4:16816092-16816111 None:intergenic 30.0%
AATTCGTCCTCTAATTAGAT+TGG + chr2_4:16816190-16816209 None:intergenic 30.0%
TCTTACAAAACGAATTTGTG+AGG + chr2_4:16816314-16816333 None:intergenic 30.0%
!! TTTATTGTTGACTCATTGTG+TGG - chr2_4:16816646-16816665 Msa0318280:CDS 30.0%
!!! GTTCCTTTTTTACTCAAATG+TGG - chr2_4:16816759-16816778 Msa0318280:CDS 30.0%
AGTCCACATTTGAGTAAAAA+AGG + chr2_4:16816765-16816784 None:intergenic 30.0%
! TTTTTACTCAAATGTGGACT+TGG - chr2_4:16816765-16816784 Msa0318280:CDS 30.0%
!! GAAGCTTATTAATTTGTGGA+AGG + chr2_4:16816839-16816858 None:intergenic 30.0%
!!! ATGAGGTAGTTTTGGTCTTA+GGG + chr2_4:16815254-16815273 None:intergenic 35.0%
!!! TATGAGGTAGTTTTGGTCTT+AGG + chr2_4:16815255-16815274 None:intergenic 35.0%
!!! GTTGAGAGTTTTGGTTTATG+AGG + chr2_4:16815271-16815290 None:intergenic 35.0%
!! ATGATGTTGGTTGAGAGTTT+TGG + chr2_4:16815280-16815299 None:intergenic 35.0%
! TTTGAGTTTACATCGTTGGT+TGG + chr2_4:16815328-16815347 None:intergenic 35.0%
! GATTGATTGTTTCTCACGTT+TGG + chr2_4:16815464-16815483 None:intergenic 35.0%
TCACCATTCACTATCAAATG+TGG + chr2_4:16815625-16815644 None:intergenic 35.0%
TGAATGGTGATCAAAGACAT+TGG - chr2_4:16815635-16815654 Msa0318280:intron 35.0%
GAATGGTGATCAAAGACATT+GGG - chr2_4:16815636-16815655 Msa0318280:intron 35.0%
AATGGTGATCAAAGACATTG+GGG - chr2_4:16815637-16815656 Msa0318280:intron 35.0%
! TTGTATATTGCTGGTTGGAT+TGG - chr2_4:16815688-16815707 Msa0318280:intron 35.0%
! TGTATATTGCTGGTTGGATT+GGG - chr2_4:16815689-16815708 Msa0318280:intron 35.0%
AAAACCAATCTAGAAGCAAG+TGG + chr2_4:16815790-16815809 None:intergenic 35.0%
!!! GCTTCTAGATTGGTTTTTAG+AGG - chr2_4:16815793-16815812 Msa0318280:intron 35.0%
TCCGTACCTTTAGTATTTGA+AGG - chr2_4:16816088-16816107 Msa0318280:intron 35.0%
AGAGAGGATGATATTGATCA+AGG - chr2_4:16816590-16816609 Msa0318280:CDS 35.0%
ATGATATTGATCAAGGATGC+AGG - chr2_4:16816597-16816616 Msa0318280:CDS 35.0%
! GGGTGAAGCTTATTAATTTG+TGG + chr2_4:16816843-16816862 None:intergenic 35.0%
GCTAGTACAAAAATGAAGCA+AGG - chr2_4:16816897-16816916 Msa0318280:CDS 35.0%
!!! ATGAGGTAGTTTTGGTCTTA+GGG + chr2_4:16815254-16815273 None:intergenic 35.0%
!!! TATGAGGTAGTTTTGGTCTT+AGG + chr2_4:16815255-16815274 None:intergenic 35.0%
!!! GTTGAGAGTTTTGGTTTATG+AGG + chr2_4:16815271-16815290 None:intergenic 35.0%
!! ATGATGTTGGTTGAGAGTTT+TGG + chr2_4:16815280-16815299 None:intergenic 35.0%
! TTTGAGTTTACATCGTTGGT+TGG + chr2_4:16815328-16815347 None:intergenic 35.0%
! GATTGATTGTTTCTCACGTT+TGG + chr2_4:16815464-16815483 None:intergenic 35.0%
TCACCATTCACTATCAAATG+TGG + chr2_4:16815625-16815644 None:intergenic 35.0%
TGAATGGTGATCAAAGACAT+TGG - chr2_4:16815635-16815654 Msa0318280:intron 35.0%
GAATGGTGATCAAAGACATT+GGG - chr2_4:16815636-16815655 Msa0318280:intron 35.0%
AATGGTGATCAAAGACATTG+GGG - chr2_4:16815637-16815656 Msa0318280:intron 35.0%
! TTGTATATTGCTGGTTGGAT+TGG - chr2_4:16815688-16815707 Msa0318280:intron 35.0%
! TGTATATTGCTGGTTGGATT+GGG - chr2_4:16815689-16815708 Msa0318280:intron 35.0%
AAAACCAATCTAGAAGCAAG+TGG + chr2_4:16815790-16815809 None:intergenic 35.0%
!!! GCTTCTAGATTGGTTTTTAG+AGG - chr2_4:16815793-16815812 Msa0318280:intron 35.0%
TCCGTACCTTTAGTATTTGA+AGG - chr2_4:16816088-16816107 Msa0318280:intron 35.0%
AGAGAGGATGATATTGATCA+AGG - chr2_4:16816590-16816609 Msa0318280:CDS 35.0%
ATGATATTGATCAAGGATGC+AGG - chr2_4:16816597-16816616 Msa0318280:CDS 35.0%
! GGGTGAAGCTTATTAATTTG+TGG + chr2_4:16816843-16816862 None:intergenic 35.0%
GCTAGTACAAAAATGAAGCA+AGG - chr2_4:16816897-16816916 Msa0318280:CDS 35.0%
!!! TAGTTTTGGTCTTAGGGTTG+AGG + chr2_4:16815248-16815267 None:intergenic 40.0%
!!! CATCGTTGGTTGGTTTTTCT+TGG + chr2_4:16815318-16815337 None:intergenic 40.0%
TTGATTCTCTGCATGGTGTT+AGG + chr2_4:16815432-16815451 None:intergenic 40.0%
CAGTTGAGAAAACCAAGAGA+AGG - chr2_4:16815551-16815570 Msa0318280:intron 40.0%
TGTTCCACTTGCTTCTAGAT+TGG - chr2_4:16815783-16815802 Msa0318280:intron 40.0%
!! TGGTTTTTAGAGGGTTCAGT+TGG - chr2_4:16815803-16815822 Msa0318280:intron 40.0%
AACTCTCTGTAAGCAGCAAT+AGG + chr2_4:16815829-16815848 None:intergenic 40.0%
GCTTACAGAGAGTTGTTGAA+TGG - chr2_4:16815835-16815854 Msa0318280:intron 40.0%
TTGCAATCGTGACTTTGTGT+TGG - chr2_4:16816537-16816556 Msa0318280:CDS 40.0%
! TGGTGATTTTCAGACAAGAG+AGG - chr2_4:16816574-16816593 Msa0318280:CDS 40.0%
TATTGATCAAGGATGCAGGA+AGG - chr2_4:16816601-16816620 Msa0318280:CDS 40.0%
ATTGATCAAGGATGCAGGAA+GGG - chr2_4:16816602-16816621 Msa0318280:CDS 40.0%
!! TTGTTGACTCATTGTGTGGA+TGG - chr2_4:16816650-16816669 Msa0318280:CDS 40.0%
!!! TAGTTTTGGTCTTAGGGTTG+AGG + chr2_4:16815248-16815267 None:intergenic 40.0%
!!! CATCGTTGGTTGGTTTTTCT+TGG + chr2_4:16815318-16815337 None:intergenic 40.0%
TTGATTCTCTGCATGGTGTT+AGG + chr2_4:16815432-16815451 None:intergenic 40.0%
CAGTTGAGAAAACCAAGAGA+AGG - chr2_4:16815551-16815570 Msa0318280:intron 40.0%
TGTTCCACTTGCTTCTAGAT+TGG - chr2_4:16815783-16815802 Msa0318280:intron 40.0%
!! TGGTTTTTAGAGGGTTCAGT+TGG - chr2_4:16815803-16815822 Msa0318280:intron 40.0%
AACTCTCTGTAAGCAGCAAT+AGG + chr2_4:16815829-16815848 None:intergenic 40.0%
GCTTACAGAGAGTTGTTGAA+TGG - chr2_4:16815835-16815854 Msa0318280:intron 40.0%
TTGCAATCGTGACTTTGTGT+TGG - chr2_4:16816537-16816556 Msa0318280:CDS 40.0%
! TGGTGATTTTCAGACAAGAG+AGG - chr2_4:16816574-16816593 Msa0318280:CDS 40.0%
TATTGATCAAGGATGCAGGA+AGG - chr2_4:16816601-16816620 Msa0318280:CDS 40.0%
ATTGATCAAGGATGCAGGAA+GGG - chr2_4:16816602-16816621 Msa0318280:CDS 40.0%
!! TTGTTGACTCATTGTGTGGA+TGG - chr2_4:16816650-16816669 Msa0318280:CDS 40.0%
!! TTTGGTCTTAGGGTTGAGGT+GGG + chr2_4:16815244-16815263 None:intergenic 45.0%
!!! TTTTGGTCTTAGGGTTGAGG+TGG + chr2_4:16815245-16815264 None:intergenic 45.0%
!! TTTCTTGGTTTGTGCTGCAG+TGG + chr2_4:16815303-16815322 None:intergenic 45.0%
! ATCCCTCAAGCTTTATGCTC+CGG - chr2_4:16815498-16815517 Msa0318280:CDS 45.0%
!! GGAAAGCAAGGTTTGTTGTG+TGG - chr2_4:16815586-16815605 Msa0318280:intron 45.0%
! ATATTGCTGGTTGGATTGGG+TGG - chr2_4:16815692-16815711 Msa0318280:intron 45.0%
! TATTGCTGGTTGGATTGGGT+GGG - chr2_4:16815693-16815712 Msa0318280:intron 45.0%
GAATGGTGAACTCATTGCCA+AGG - chr2_4:16815852-16815871 Msa0318280:intron 45.0%
GAAGGGTGATTATGAGAGGA+GGG - chr2_4:16816619-16816638 Msa0318280:CDS 45.0%
!! TTTGGTCTTAGGGTTGAGGT+GGG + chr2_4:16815244-16815263 None:intergenic 45.0%
!!! TTTTGGTCTTAGGGTTGAGG+TGG + chr2_4:16815245-16815264 None:intergenic 45.0%
!! TTTCTTGGTTTGTGCTGCAG+TGG + chr2_4:16815303-16815322 None:intergenic 45.0%
! ATCCCTCAAGCTTTATGCTC+CGG - chr2_4:16815498-16815517 Msa0318280:CDS 45.0%
!! GGAAAGCAAGGTTTGTTGTG+TGG - chr2_4:16815586-16815605 Msa0318280:intron 45.0%
! ATATTGCTGGTTGGATTGGG+TGG - chr2_4:16815692-16815711 Msa0318280:intron 45.0%
! TATTGCTGGTTGGATTGGGT+GGG - chr2_4:16815693-16815712 Msa0318280:intron 45.0%
GAATGGTGAACTCATTGCCA+AGG - chr2_4:16815852-16815871 Msa0318280:intron 45.0%
GAAGGGTGATTATGAGAGGA+GGG - chr2_4:16816619-16816638 Msa0318280:CDS 45.0%
GTGGGTTTGGAGAGGTTAGT+TGG + chr2_4:16815226-16815245 None:intergenic 50.0%
! TCTTAGGGTTGAGGTGGGTT+TGG + chr2_4:16815239-16815258 None:intergenic 50.0%
TGTGCTGCAGTGGATGATGT+TGG + chr2_4:16815293-16815312 None:intergenic 50.0%
! TTCTCTGCATGGTGTTAGGC+CGG + chr2_4:16815428-16815447 None:intergenic 50.0%
GTCCGGAGCATAAAGCTTGA+GGG + chr2_4:16815503-16815522 None:intergenic 50.0%
TGTCCGGAGCATAAAGCTTG+AGG + chr2_4:16815504-16815523 None:intergenic 50.0%
!! GGTTTGTTGTGTGGTGCTGA+TGG - chr2_4:16815595-16815614 Msa0318280:intron 50.0%
TGGGGTGAGTTTATCACACC+AGG - chr2_4:16815655-16815674 Msa0318280:intron 50.0%
GGGGTGAGTTTATCACACCA+GGG - chr2_4:16815656-16815675 Msa0318280:intron 50.0%
GCAGGAAGGGTGATTATGAG+AGG - chr2_4:16816615-16816634 Msa0318280:CDS 50.0%
GGAAGGGTGATTATGAGAGG+AGG - chr2_4:16816618-16816637 Msa0318280:CDS 50.0%
GTGGGTTTGGAGAGGTTAGT+TGG + chr2_4:16815226-16815245 None:intergenic 50.0%
! TCTTAGGGTTGAGGTGGGTT+TGG + chr2_4:16815239-16815258 None:intergenic 50.0%
TGTGCTGCAGTGGATGATGT+TGG + chr2_4:16815293-16815312 None:intergenic 50.0%
! TTCTCTGCATGGTGTTAGGC+CGG + chr2_4:16815428-16815447 None:intergenic 50.0%
GTCCGGAGCATAAAGCTTGA+GGG + chr2_4:16815503-16815522 None:intergenic 50.0%
TGTCCGGAGCATAAAGCTTG+AGG + chr2_4:16815504-16815523 None:intergenic 50.0%
!! GGTTTGTTGTGTGGTGCTGA+TGG - chr2_4:16815595-16815614 Msa0318280:intron 50.0%
TGGGGTGAGTTTATCACACC+AGG - chr2_4:16815655-16815674 Msa0318280:intron 50.0%
GGGGTGAGTTTATCACACCA+GGG - chr2_4:16815656-16815675 Msa0318280:intron 50.0%
GCAGGAAGGGTGATTATGAG+AGG - chr2_4:16816615-16816634 Msa0318280:CDS 50.0%
GGAAGGGTGATTATGAGAGG+AGG - chr2_4:16816618-16816637 Msa0318280:CDS 50.0%
! TGGTGTTAGGCCGGAGATGT+CGG + chr2_4:16815419-16815438 None:intergenic 55.0%
!!! GTTGCTTTTATGGCCAGCGC+TGG + chr2_4:16815532-16815551 None:intergenic 55.0%
!! GTTGGATTGGGTGGGTTGGT+AGG - chr2_4:16815701-16815720 Msa0318280:intron 55.0%
! TGGTGTTAGGCCGGAGATGT+CGG + chr2_4:16815419-16815438 None:intergenic 55.0%
!!! GTTGCTTTTATGGCCAGCGC+TGG + chr2_4:16815532-16815551 None:intergenic 55.0%
!! GTTGGATTGGGTGGGTTGGT+AGG - chr2_4:16815701-16815720 Msa0318280:intron 55.0%
! GGGTTGAGGTGGGTTTGGAG+AGG + chr2_4:16815234-16815253 None:intergenic 60.0%
! CGGGGAGTGGTGATGAGATG+AGG + chr2_4:16815390-16815409 None:intergenic 60.0%
! GCTGGTTGGATTGGGTGGGT+TGG - chr2_4:16815697-16815716 Msa0318280:intron 60.0%
! GGGTTGAGGTGGGTTTGGAG+AGG + chr2_4:16815234-16815253 None:intergenic 60.0%
! CGGGGAGTGGTGATGAGATG+AGG + chr2_4:16815390-16815409 None:intergenic 60.0%
! GCTGGTTGGATTGGGTGGGT+TGG - chr2_4:16815697-16815716 Msa0318280:intron 60.0%
ATGTCGGCGACAGCGGGGAG+TGG + chr2_4:16815403-16815422 None:intergenic 70.0%
CGGAGATGTCGGCGACAGCG+GGG + chr2_4:16815408-16815427 None:intergenic 70.0%
CCGGAGATGTCGGCGACAGC+GGG + chr2_4:16815409-16815428 None:intergenic 70.0%
CCCGCTGTCGCCGACATCTC+CGG - chr2_4:16815406-16815425 Msa0318280:three_prime_UTR 70.0%
GCCGGAGATGTCGGCGACAG+CGG + chr2_4:16815410-16815429 None:intergenic 70.0%
ATGTCGGCGACAGCGGGGAG+TGG + chr2_4:16815403-16815422 None:intergenic 70.0%
CGGAGATGTCGGCGACAGCG+GGG + chr2_4:16815408-16815427 None:intergenic 70.0%
CCGGAGATGTCGGCGACAGC+GGG + chr2_4:16815409-16815428 None:intergenic 70.0%
CCCGCTGTCGCCGACATCTC+CGG - chr2_4:16815406-16815425 Msa0318280:three_prime_UTR 70.0%
GCCGGAGATGTCGGCGACAG+CGG + chr2_4:16815410-16815429 None:intergenic 70.0%
TCCGGACAGCGCTCCAGCGC+TGG - chr2_4:16815516-16815535 Msa0318280:CDS 75.0%
!! GCCAGCGCTGGAGCGCTGTC+CGG + chr2_4:16815520-16815539 None:intergenic 75.0%
TCCGGACAGCGCTCCAGCGC+TGG - chr2_4:16815516-16815535 Msa0318280:CDS 75.0%
!! GCCAGCGCTGGAGCGCTGTC+CGG + chr2_4:16815520-16815539 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 16815208 16816935 16815208 ID=Msa0318280;Name=Msa0318280
chr2_4 mRNA 16815208 16816935 16815208 ID=Msa0318280-mRNA-1;Parent=Msa0318280;Name=Msa0318280-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0|0.25|1|0|0|4|256|227
chr2_4 exon 16815208 16815556 16815208 ID=Msa0318280-mRNA-1:exon:6355;Parent=Msa0318280-mRNA-1
chr2_4 exon 16816267 16816466 16816267 ID=Msa0318280-mRNA-1:exon:6354;Parent=Msa0318280-mRNA-1
chr2_4 exon 16816485 16816671 16816485 ID=Msa0318280-mRNA-1:exon:6353;Parent=Msa0318280-mRNA-1
chr2_4 exon 16816732 16816935 16816732 ID=Msa0318280-mRNA-1:exon:6352;Parent=Msa0318280-mRNA-1
chr2_4 CDS 16816732 16816935 16816732 ID=Msa0318280-mRNA-1:cds;Parent=Msa0318280-mRNA-1
chr2_4 CDS 16816485 16816671 16816485 ID=Msa0318280-mRNA-1:cds;Parent=Msa0318280-mRNA-1
chr2_4 CDS 16816267 16816466 16816267 ID=Msa0318280-mRNA-1:cds;Parent=Msa0318280-mRNA-1
chr2_4 CDS 16815464 16815556 16815464 ID=Msa0318280-mRNA-1:cds;Parent=Msa0318280-mRNA-1
chr2_4 three_prime_UTR 16815208 16815463 16815208 ID=Msa0318280-mRNA-1:three_prime_utr;Parent=Msa0318280-mRNA-1
Gene Sequence

>Msa0318280

ATGTCTCTAACAATTCCAACTAACCTCTCCAAACCCACCTCAACCCTAAGACCAAAACTACCTCATAAACCAAAACTCTCAACCAACATCATCCACTGCAGCACAAACCAAGAAAAACCAACCAACGATGTAAACTCAAATCTAAAAGCATTCTCAGCTGCACTAGCACTCTCATCAATCCTCATCTCATCACCACTCCCCGCTAAACAATCAATCAAAAAGCTTGAATCATCCCTCAAGCTTTATGCTCCGGACAGCGCTCCAGCGCTGGCCATAAAAGCAACAGTTGAGAAAACCAAGAGAAGGTTTGATAACTATGGAAAGCAAGGTTTGTTGTGTGGTGCTGATGGTTTACCACATTTGATAGTGAATGGTGATCAAAGACATTGGGGGATATTGTTTTTGTATATTGCTGGTTGGATTGGGTGGGTTGGTAGGAGTTACTTGATTGCTATTCGTGATGAGAAGAAACCTACTCAGAAAGAGATTATTATTGATGTTCCACTTGCTTCTAGATTGGTTTTTAGAGGGTTCAGTTGGCCTATTGCTGCTTACAGAGAGTTGTTGAATGGTGAACTCATTGCCAAGGATACAAGAGAGGATGATATTGATCAAGGATGCAGGAAGGGTGATTATGAGAGGAGGGTGCTTTTATTGTTGACTCATTGTGTGGATGGATCTTAA

Protein sequence

>Msa0318280

MSLTIPTNLSKPTSTLRPKLPHKPKLSTNIIHCSTNQEKPTNDVNSNLKAFSAALALSSILISSPLPAKQSIKKLESSLKLYAPDSAPALAIKATVEKTKRRFDNYGKQGLLCGADGLPHLIVNGDQRHWGILFLYIAGWIGWVGRSYLIAIRDEKKPTQKEIIIDVPLASRLVFRGFSWPIAAYRELLNGELIAKDTREDDIDQGCRKGDYERRVLLLLTHCVDGS*