AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0181560


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0181560 MtrunA17_Chr1g0202801 91.860 258 12 1 1 249 1 258 2.50e-162 449
Msa0181560 MtrunA17_Chr7g0274161 47.619 63 26 1 77 139 59 114 4.05e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0181560 AT5G52440.1 58.036 224 72 8 31 238 42 259 1.02e-66 207

Find 86 sgRNAs with CRISPR-Local

Find 394 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGGTAAGGATTCACTTTC+TGG 0.180828 1_4:-69798088 None:intergenic
GCCCCTGAAGCTCTTGTAAT+TGG 0.190403 1_4:+69793126 Msa0181560:CDS
TTAAGAGCAAAGTGAATTTC+TGG 0.200028 1_4:+69792666 Msa0181560:five_prime_UTR
TGGTTTATGCGTCTCTCTTT+GGG 0.224648 1_4:+69793097 Msa0181560:CDS
CCGGGTAATGAACTGATAAT+TGG 0.230141 1_4:-69798140 None:intergenic
TTGGAATGGTTTGAAGAATC+TGG 0.237555 1_4:+69792930 Msa0181560:CDS
GTGGTTTATGCGTCTCTCTT+TGG 0.244905 1_4:+69793096 Msa0181560:CDS
CCCCTGAAGCTCTTGTAATT+GGG 0.280358 1_4:+69793127 Msa0181560:CDS
AATGCAGGTTGCTCGAAATC+TGG 0.293696 1_4:+69795324 Msa0181560:intron
GCCGGTAGTTGCCCACATTC+CGG 0.329517 1_4:-69798159 None:intergenic
GAACATGTTCCTCCTAGTTT+AGG 0.340162 1_4:-69792850 None:intergenic
ACCCCAATTACAAGAGCTTC+AGG 0.344512 1_4:-69793129 None:intergenic
CTGACCTCAGCAAGACCTTT+AGG 0.358065 1_4:-69793174 None:intergenic
CCGGTAGTTGCCCACATTCC+GGG 0.372632 1_4:-69798158 None:intergenic
AGAAAGTGAATCCTTACCTT+TGG 0.373691 1_4:+69798090 Msa0181560:CDS
CTTTCTGGCTTCTGAGGTGG+TGG 0.383809 1_4:-69798073 None:intergenic
ATTTGATGTTGCAGTTGCTT+TGG 0.398510 1_4:-69792743 None:intergenic
GCCATTAGATTCTTAGAGAT+AGG 0.398583 1_4:+69792706 Msa0181560:five_prime_UTR
TCCTATCTCTAAGAATCTAA+TGG 0.411043 1_4:-69792707 None:intergenic
GGCAGCTGCTGCACAACTGC+AGG 0.416323 1_4:+69797882 Msa0181560:CDS
TTGATGTATTGAATGATGTT+TGG 0.433944 1_4:-69792772 None:intergenic
ACTAACCTGGATCTCTCTAA+TGG 0.439471 1_4:-69795374 None:intergenic
TAAGAGCAAAGTGAATTTCT+GGG 0.439567 1_4:+69792667 Msa0181560:five_prime_UTR
CGGGTAATGAACTGATAATT+GGG 0.441172 1_4:-69798139 None:intergenic
ATTTAAGAGTACCCTTGAAC+GGG 0.443904 1_4:+69795505 Msa0181560:CDS
AAGAGTACGTATTCTGAGTT+GGG 0.445136 1_4:-69795553 None:intergenic
AGTACCCTTGAACGGGAGAT+TGG 0.451217 1_4:+69795512 Msa0181560:CDS
GAATTGTCATTTGAAGATAC+AGG 0.452864 1_4:+69798354 Msa0181560:three_prime_UTR
GATTCACTTTCTGGCTTCTG+AGG 0.461812 1_4:-69798079 None:intergenic
GAAGAGTACGTATTCTGAGT+TGG 0.463633 1_4:-69795554 None:intergenic
TGGAATGGTTTGAAGAATCT+GGG 0.464571 1_4:+69792931 Msa0181560:CDS
TATGCGTCTCTCTTTGGGGT+GGG 0.475454 1_4:+69793102 Msa0181560:CDS
ACCCACCATTAGAGAGATCC+AGG 0.479518 1_4:+69795369 Msa0181560:CDS
TCAGAGCTGTATGCTCTACT+TGG 0.481001 1_4:-69797826 None:intergenic
TAGAGAAGGAAGAGAGAGGG+AGG 0.481971 1_4:-69798300 None:intergenic
TAGATTCTTAGAGATAGGAT+TGG 0.486220 1_4:+69792711 Msa0181560:five_prime_UTR
CCCGGAATGTGGGCAACTAC+CGG 0.486756 1_4:+69798158 Msa0181560:three_prime_UTR
AGAGATAGGATTGGAGCAAA+GGG 0.490946 1_4:+69792720 Msa0181560:five_prime_UTR
GATAGAAAGGGTCGGTGTAA+AGG 0.500755 1_4:+69793069 Msa0181560:intron
CCCTGAAGCTCTTGTAATTG+GGG 0.510021 1_4:+69793128 Msa0181560:CDS
TCACTTTCTGGCTTCTGAGG+TGG 0.512638 1_4:-69798076 None:intergenic
CAAGACCAATCTCCCGTTCA+AGG 0.514273 1_4:-69795517 None:intergenic
TTCTTATGAATCCAAAGGTA+AGG 0.518567 1_4:-69798101 None:intergenic
CCAATTATCAGTTCATTACC+CGG 0.519731 1_4:+69798140 Msa0181560:three_prime_UTR
ATGCAGGTTGCTCGAAATCT+GGG 0.519962 1_4:+69795325 Msa0181560:intron
CCCCAATTACAAGAGCTTCA+GGG 0.521995 1_4:-69793128 None:intergenic
CCCAATTACAAGAGCTTCAG+GGG 0.523540 1_4:-69793127 None:intergenic
AATAAATGATGTGACATGGC+AGG 0.524985 1_4:-69792644 None:intergenic
TAGAGATAGGATTGGAGCAA+AGG 0.526973 1_4:+69792719 Msa0181560:five_prime_UTR
AAAGACGGTGACCCAATGAA+TGG 0.530058 1_4:-69792900 None:intergenic
CAAAGTGAATTTCTGGGGAA+GGG 0.535086 1_4:+69792673 Msa0181560:five_prime_UTR
TCAGTTCATTACCCGGAATG+TGG 0.536688 1_4:+69798147 Msa0181560:three_prime_UTR
CTGAGAACCATTGGTACTAT+CGG 0.543826 1_4:-69795612 None:intergenic
AATTTAAGAGTACCCTTGAA+CGG 0.550071 1_4:+69795504 Msa0181560:CDS
CAAAATTGATTACACTATGC+CGG 0.554608 1_4:-69798177 None:intergenic
TTATAGAGAAGGAAGAGAGA+GGG 0.560302 1_4:-69798303 None:intergenic
GAACAGCAAAGTCAGCCTCC+TGG 0.562573 1_4:+69797937 Msa0181560:CDS
AACAGCAGTCTGAGAACCAT+TGG 0.563019 1_4:-69795621 None:intergenic
GGTTTATGCGTCTCTCTTTG+GGG 0.565629 1_4:+69793098 Msa0181560:CDS
GCAAAGTGAATTTCTGGGGA+AGG 0.568201 1_4:+69792672 Msa0181560:five_prime_UTR
GATTACAGAAGAGCAACTAA+AGG 0.568988 1_4:+69797861 Msa0181560:CDS
TTATGCGTCTCTCTTTGGGG+TGG 0.571962 1_4:+69793101 Msa0181560:CDS
CAGTTCATTACCCGGAATGT+GGG 0.575890 1_4:+69798148 Msa0181560:three_prime_UTR
CGTACTTCTTATGAATCCAA+AGG 0.578325 1_4:-69798106 None:intergenic
TTGGTACTATCGGTGGATAG+TGG 0.581780 1_4:-69795602 None:intergenic
ACCTGGATCTCTCTAATGGT+GGG 0.582822 1_4:-69795370 None:intergenic
AACCTGGATCTCTCTAATGG+TGG 0.586086 1_4:-69795371 None:intergenic
TGGTCCTAAAGGTCTTGCTG+AGG 0.586660 1_4:+69793170 Msa0181560:CDS
ATGTTATTATGTCCTAAACT+AGG 0.587873 1_4:+69792838 Msa0181560:CDS
CTATAACAATGTAGATGGGA+AGG 0.593214 1_4:+69797798 Msa0181560:intron
AGATTCTTCAAACCATTCCA+AGG 0.595262 1_4:-69792928 None:intergenic
TGATGTGGTGTTGCGAACAT+TGG 0.602856 1_4:-69795576 None:intergenic
TTTACACAACTCAAGTGACT+CGG 0.608976 1_4:-69798206 None:intergenic
AAGACCAATCTCCCGTTCAA+GGG 0.614541 1_4:-69795516 None:intergenic
CATTCCAAGGAGAGAAAAGA+CGG 0.620612 1_4:-69792915 None:intergenic
CTATCCACCGATAGTACCAA+TGG 0.620692 1_4:+69795605 Msa0181560:CDS
CTTAAATAAATGATGTGACA+TGG 0.625387 1_4:-69792648 None:intergenic
AAGAGCAAAGTGAATTTCTG+GGG 0.626095 1_4:+69792668 Msa0181560:five_prime_UTR
AGAACCATTGGTACTATCGG+TGG 0.637633 1_4:-69795609 None:intergenic
GTTATAGAGAAGGAAGAGAG+AGG 0.639426 1_4:-69798304 None:intergenic
GGTGGATAGTGGAGCTGATG+TGG 0.643992 1_4:-69795591 None:intergenic
TTATTATGTCCTAAACTAGG+AGG 0.663899 1_4:+69792841 Msa0181560:CDS
TAGTTTAGGACATAATAACA+TGG 0.692470 1_4:-69792836 None:intergenic
ACACAACTCAAGTGACTCGG+AGG 0.692637 1_4:-69798203 None:intergenic
AAGTAGAGCATACAGCTCTG+AGG 0.718115 1_4:+69797828 Msa0181560:CDS
GGGTCGGTGTAAAGGTAACG+TGG 0.723610 1_4:+69793077 Msa0181560:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACTATTTTTTTTTTTTGAAA+CGG + chr1_4:69796077-69796096 Msa0181560:intron 10.0%
!!! CAATTCTATTTTATTTTTTA+TGG - chr1_4:69798340-69798359 None:intergenic 10.0%
!! AATTGGATATTAATTAGAAT+TGG - chr1_4:69793966-69793985 None:intergenic 15.0%
!!! TATTTTGTAAAATGTATAGA+GGG - chr1_4:69794992-69795011 None:intergenic 15.0%
!!! ATCTATTTTATTTTTATCTG+CGG + chr1_4:69795665-69795684 Msa0181560:intron 15.0%
!!! ATACGAAAAAATGGTTTTTT+GGG - chr1_4:69792970-69792989 None:intergenic 20.0%
!!! AATACGAAAAAATGGTTTTT+TGG - chr1_4:69792971-69792990 None:intergenic 20.0%
!!! AAACCATTTTTTCGTATTAT+AGG + chr1_4:69792973-69792992 Msa0181560:CDS 20.0%
!! ATACCTATAATACGAAAAAA+TGG - chr1_4:69792979-69792998 None:intergenic 20.0%
!! AATGAATTATGAACACTTTA+AGG + chr1_4:69793877-69793896 Msa0181560:intron 20.0%
!! TTTATATCAATGTTCATTGA+AGG - chr1_4:69794162-69794181 None:intergenic 20.0%
!!! ACATAAAAGTAACAACTTTT+GGG - chr1_4:69794625-69794644 None:intergenic 20.0%
!!! AACATAAAAGTAACAACTTT+TGG - chr1_4:69794626-69794645 None:intergenic 20.0%
!! AATGTATAATAATACTTTCG+TGG + chr1_4:69794856-69794875 Msa0181560:intron 20.0%
!! GTCAAAAAAACAAAGATATA+CGG - chr1_4:69794944-69794963 None:intergenic 20.0%
!!! TGTTTTTTTGACATTGTTTA+AGG + chr1_4:69794952-69794971 Msa0181560:intron 20.0%
!!! GTTTTTTTGACATTGTTTAA+GGG + chr1_4:69794953-69794972 Msa0181560:intron 20.0%
!!! CTATTTTGTAAAATGTATAG+AGG - chr1_4:69794993-69795012 None:intergenic 20.0%
!! TCTCATTCAAAAATAATCAT+TGG - chr1_4:69795109-69795128 None:intergenic 20.0%
!!! AAAATAATTGTTGTTGCTAT+TGG + chr1_4:69795196-69795215 Msa0181560:intron 20.0%
!! GATAAAAATAAAATAGATGC+TGG - chr1_4:69795663-69795682 None:intergenic 20.0%
!!! TCTATTTTATTTTTATCTGC+GGG + chr1_4:69795666-69795685 Msa0181560:intron 20.0%
!! TATTTGATAAAATGCATATG+AGG - chr1_4:69795728-69795747 None:intergenic 20.0%
!!! TAGTTTTCAATTATAACCAT+TGG - chr1_4:69796061-69796080 None:intergenic 20.0%
!! TGGAGAAAAAAATACAATAA+GGG + chr1_4:69796150-69796169 Msa0181560:intron 20.0%
!! ATAACTTGGAAATCTAATAA+TGG - chr1_4:69796523-69796542 None:intergenic 20.0%
!! ATTTATGTACTTCTAGATTT+AGG + chr1_4:69797248-69797267 Msa0181560:intron 20.0%
!! TATATCTATAACAATGTAGA+TGG + chr1_4:69797793-69797812 Msa0181560:intron 20.0%
!! ATATCTATAACAATGTAGAT+GGG + chr1_4:69797794-69797813 Msa0181560:intron 20.0%
! CTTAAATAAATGATGTGACA+TGG - chr1_4:69792651-69792670 None:intergenic 25.0%
! TTGATGTATTGAATGATGTT+TGG - chr1_4:69792775-69792794 None:intergenic 25.0%
!! TAGTTTAGGACATAATAACA+TGG - chr1_4:69792839-69792858 None:intergenic 25.0%
! ATGTTATTATGTCCTAAACT+AGG + chr1_4:69792838-69792857 Msa0181560:CDS 25.0%
! TGAATGGAGATAAAAATGTT+GGG - chr1_4:69792887-69792906 None:intergenic 25.0%
! ATGAATGGAGATAAAAATGT+TGG - chr1_4:69792888-69792907 None:intergenic 25.0%
!! ACATTTTTATCTCCATTCAT+TGG + chr1_4:69792888-69792907 Msa0181560:CDS 25.0%
!! CATTTTTATCTCCATTCATT+GGG + chr1_4:69792889-69792908 Msa0181560:CDS 25.0%
!! TCAACTTCTATTATCTCTTT+TGG + chr1_4:69793010-69793029 Msa0181560:intron 25.0%
!! CAACTTCTATTATCTCTTTT+GGG + chr1_4:69793011-69793030 Msa0181560:intron 25.0%
!! TACTCATTTTGTAGATAGAA+AGG + chr1_4:69793056-69793075 Msa0181560:intron 25.0%
!! ACTCATTTTGTAGATAGAAA+GGG + chr1_4:69793057-69793076 Msa0181560:intron 25.0%
! GCAATTAATCTGAATTACAT+AGG - chr1_4:69793242-69793261 None:intergenic 25.0%
! CATACTATTTCACTTTGTTA+AGG + chr1_4:69793322-69793341 Msa0181560:intron 25.0%
! TTATCACTTTCTGATTTATG+TGG + chr1_4:69793373-69793392 Msa0181560:intron 25.0%
! CTTATTTCGATAGATTCTTT+AGG - chr1_4:69793540-69793559 None:intergenic 25.0%
! TCTAATTGATATCTAACACT+TGG - chr1_4:69793729-69793748 None:intergenic 25.0%
! AATTAGTTGAATACTGTTTG+AGG + chr1_4:69793748-69793767 Msa0181560:intron 25.0%
! AGTTGTCATTAGTTATTAGT+TGG - chr1_4:69793914-69793933 None:intergenic 25.0%
! ACATGTTATTGACATTAGAA+AGG + chr1_4:69794073-69794092 Msa0181560:intron 25.0%
! ATTGTGAATATTTACGTTTG+TGG + chr1_4:69794273-69794292 Msa0181560:intron 25.0%
!!! TGTTAATTTTCAAGCAGATT+TGG - chr1_4:69794378-69794397 None:intergenic 25.0%
! AGAAAATATGAACTATGAAG+CGG - chr1_4:69794426-69794445 None:intergenic 25.0%
! GAATATGTATATTCATACAG+TGG + chr1_4:69794674-69794693 Msa0181560:intron 25.0%
! TGGACATGAAATTAATAACT+GGG + chr1_4:69794694-69794713 Msa0181560:intron 25.0%
! ATGCTACAAATAAGTTTGAA+AGG + chr1_4:69794764-69794783 Msa0181560:intron 25.0%
! TGCTACAAATAAGTTTGAAA+GGG + chr1_4:69794765-69794784 Msa0181560:intron 25.0%
! ACATTTAGTATTACGAATGA+AGG - chr1_4:69794841-69794860 None:intergenic 25.0%
! ATTATTTATACCCTGAATGT+CGG - chr1_4:69795073-69795092 None:intergenic 25.0%
! TGAGATTAACTTTAGATAGT+TGG + chr1_4:69795124-69795143 Msa0181560:intron 25.0%
! AACAAATTTAATCTACACTC+TGG - chr1_4:69795412-69795431 None:intergenic 25.0%
!!! CTATTTTATTTTTATCTGCG+GGG + chr1_4:69795667-69795686 Msa0181560:intron 25.0%
!!! AGATGATTGTTTTGTAAGAT+GGG - chr1_4:69795799-69795818 None:intergenic 25.0%
!! AAATCTATTTTCATGACTTG+GGG - chr1_4:69795957-69795976 None:intergenic 25.0%
!! CAAATCTATTTTCATGACTT+GGG - chr1_4:69795958-69795977 None:intergenic 25.0%
!!! ACAATTTTAATCTCAACCAT+TGG + chr1_4:69795995-69796014 Msa0181560:intron 25.0%
! TATAACCATTGGATCTTTAT+TGG - chr1_4:69796050-69796069 None:intergenic 25.0%
! GTGGAGAAAAAAATACAATA+AGG + chr1_4:69796149-69796168 Msa0181560:intron 25.0%
! GGAGAAAAAAATACAATAAG+GGG + chr1_4:69796151-69796170 Msa0181560:intron 25.0%
! AAAATACAATAAGGGGAAAT+CGG + chr1_4:69796158-69796177 Msa0181560:intron 25.0%
!! TATAGTAAATCTCTTTGAAG+GGG - chr1_4:69796449-69796468 None:intergenic 25.0%
! CTATAGTAAATCTCTTTGAA+GGG - chr1_4:69796450-69796469 None:intergenic 25.0%
! ACTATAGTAAATCTCTTTGA+AGG - chr1_4:69796451-69796470 None:intergenic 25.0%
! CAAAGAGATTTACTATAGTT+TGG + chr1_4:69796452-69796471 Msa0181560:intron 25.0%
! AACAAACTTCAATGATAACT+TGG - chr1_4:69796537-69796556 None:intergenic 25.0%
! AATAGAACATGATAAAAACG+AGG + chr1_4:69796676-69796695 Msa0181560:intron 25.0%
! CATATGGCAAAATAAAAGTA+AGG - chr1_4:69796829-69796848 None:intergenic 25.0%
! AATAAATCACTGAAGAACAA+AGG + chr1_4:69796881-69796900 Msa0181560:intron 25.0%
! GACATTACTAATAGCTAAAT+TGG + chr1_4:69796927-69796946 Msa0181560:intron 25.0%
!! ATATGTCATTTGTGACTATA+TGG - chr1_4:69797156-69797175 None:intergenic 25.0%
! ACTATTTATGAACAACGAAA+TGG - chr1_4:69797394-69797413 None:intergenic 25.0%
! GATGAAATAAGCATTTAAGA+AGG + chr1_4:69797697-69797716 Msa0181560:intron 25.0%
TTAAGAGCAAAGTGAATTTC+TGG + chr1_4:69792666-69792685 Msa0181560:five_prime_UTR 30.0%
TAAGAGCAAAGTGAATTTCT+GGG + chr1_4:69792667-69792686 Msa0181560:five_prime_UTR 30.0%
! TCCTATCTCTAAGAATCTAA+TGG - chr1_4:69792710-69792729 None:intergenic 30.0%
TAGATTCTTAGAGATAGGAT+TGG + chr1_4:69792711-69792730 Msa0181560:five_prime_UTR 30.0%
TTATTATGTCCTAAACTAGG+AGG + chr1_4:69792841-69792860 Msa0181560:CDS 30.0%
! ATTTTGTAGATAGAAAGGGT+CGG + chr1_4:69793061-69793080 Msa0181560:intron 30.0%
!!! GTTGTTGCTTTGTTAGTTTT+TGG + chr1_4:69793150-69793169 Msa0181560:CDS 30.0%
!!! TTGTTAGTTTTTGGTCCTAA+AGG + chr1_4:69793159-69793178 Msa0181560:CDS 30.0%
ACTTTCTGATTTATGTGGTT+CGG + chr1_4:69793378-69793397 Msa0181560:intron 30.0%
TGCTTAAAATGCTATAAGAC+CGG - chr1_4:69793694-69793713 None:intergenic 30.0%
CACTTTATATAGTGATCCTA+AGG - chr1_4:69793821-69793840 None:intergenic 30.0%
AATTGGTTGAATGTTGTTCA+AGG - chr1_4:69793949-69793968 None:intergenic 30.0%
TCCAATTATATCTAACACCA+AGG + chr1_4:69793979-69793998 Msa0181560:intron 30.0%
!! ACCTTGGTGTTAGATATAAT+TGG - chr1_4:69793983-69794002 None:intergenic 30.0%
!! ACAATTCTAGAGTGTTTAGT+TGG + chr1_4:69794099-69794118 Msa0181560:intron 30.0%
TGATACACAAACAAGCTATA+GGG - chr1_4:69794198-69794217 None:intergenic 30.0%
TTGATACACAAACAAGCTAT+AGG - chr1_4:69794199-69794218 None:intergenic 30.0%
! TGAATTTATCTGTTGCTTAG+TGG - chr1_4:69794456-69794475 None:intergenic 30.0%
ACTAAGCAACAGATAAATTC+AGG + chr1_4:69794455-69794474 Msa0181560:intron 30.0%
GTGGACATGAAATTAATAAC+TGG + chr1_4:69794693-69794712 Msa0181560:intron 30.0%
! GACATTTTATTCAATTGCCA+AGG - chr1_4:69794743-69794762 None:intergenic 30.0%
GCTACAAATAAGTTTGAAAG+GGG + chr1_4:69794766-69794785 Msa0181560:intron 30.0%
AAGCTTAGTATCATGAATGA+AGG - chr1_4:69794910-69794929 None:intergenic 30.0%
CAAAGATATACGGATATGTT+CGG - chr1_4:69794934-69794953 None:intergenic 30.0%
TTTGACATTGTTTAAGGGAA+AGG + chr1_4:69794958-69794977 Msa0181560:intron 30.0%
ATTGTTTAAGGGAAAGGATA+AGG + chr1_4:69794964-69794983 Msa0181560:intron 30.0%
TGTATCTAATAAGCCTCAAA+GGG - chr1_4:69795168-69795187 None:intergenic 30.0%
ATGTATCTAATAAGCCTCAA+AGG - chr1_4:69795169-69795188 None:intergenic 30.0%
!!! GAGAGTTTTTTAAACTAACC+TGG - chr1_4:69795390-69795409 None:intergenic 30.0%
!! AATTTAAGAGTACCCTTGAA+CGG + chr1_4:69795504-69795523 Msa0181560:CDS 30.0%
GAAAAATAGCATGCATATGA+TGG - chr1_4:69795762-69795781 None:intergenic 30.0%
!! CAGATGATTGTTTTGTAAGA+TGG - chr1_4:69795800-69795819 None:intergenic 30.0%
CTAAATTCTTCTTCAACAGA+TGG - chr1_4:69795841-69795860 None:intergenic 30.0%
AGAAGAATTTAGTAGTTGCT+AGG + chr1_4:69795849-69795868 Msa0181560:intron 30.0%
!! AATCTATTTTCATGACTTGG+GGG - chr1_4:69795956-69795975 None:intergenic 30.0%
! CCAAATCTATTTTCATGACT+TGG - chr1_4:69795959-69795978 None:intergenic 30.0%
CCAAGTCATGAAAATAGATT+TGG + chr1_4:69795956-69795975 Msa0181560:intron 30.0%
! TTTTAATCTCAACCATTGGA+TGG + chr1_4:69795999-69796018 Msa0181560:intron 30.0%
! TTGATTGGGTGGTTTTTAAA+GGG - chr1_4:69796216-69796235 None:intergenic 30.0%
! TTTGATTGGGTGGTTTTTAA+AGG - chr1_4:69796217-69796236 None:intergenic 30.0%
!! TTTGGGTGTTTCTTTTGATT+GGG - chr1_4:69796230-69796249 None:intergenic 30.0%
ACGCAAGAATATACATTTGA+CGG + chr1_4:69796258-69796277 Msa0181560:intron 30.0%
ATCACTAACGACTACAATTT+AGG - chr1_4:69796482-69796501 None:intergenic 30.0%
! CTTGGAAATCTAATAATGGA+AGG - chr1_4:69796519-69796538 None:intergenic 30.0%
CTATCAATTGCCATATGATA+TGG + chr1_4:69796595-69796614 Msa0181560:intron 30.0%
ACCTCAATAACCATATCATA+TGG - chr1_4:69796608-69796627 None:intergenic 30.0%
ATGGCAAAATAAAAGTAAGG+TGG - chr1_4:69796826-69796845 None:intergenic 30.0%
AATGTCATTCTAGATGTAAG+TGG - chr1_4:69796913-69796932 None:intergenic 30.0%
AGCTTCTATTGTAGAAAAGA+TGG + chr1_4:69797044-69797063 Msa0181560:intron 30.0%
TTCTATTGTAGAAAAGATGG+AGG + chr1_4:69797047-69797066 Msa0181560:intron 30.0%
TCTATTGTAGAAAAGATGGA+GGG + chr1_4:69797048-69797067 Msa0181560:intron 30.0%
! TATTAATTTTCCGTTGTCTC+TGG - chr1_4:69797107-69797126 None:intergenic 30.0%
CTAGTAATAGTTCACTTTCT+AGG - chr1_4:69797346-69797365 None:intergenic 30.0%
!! TTTTGGGGAAAAAAGAGTAT+TGG - chr1_4:69797437-69797456 None:intergenic 30.0%
!!! GTTCTAGGAACTTTTTTTTG+GGG - chr1_4:69797452-69797471 None:intergenic 30.0%
!!! GGTTCTAGGAACTTTTTTTT+GGG - chr1_4:69797453-69797472 None:intergenic 30.0%
!!! TGGTTCTAGGAACTTTTTTT+TGG - chr1_4:69797454-69797473 None:intergenic 30.0%
AAAAAGTTCCTAGAACCAAA+TGG + chr1_4:69797456-69797475 Msa0181560:intron 30.0%
!! ATTATTTCTGCCATAGTGTA+AGG + chr1_4:69797603-69797622 Msa0181560:intron 30.0%
!! TTATTTCTGCCATAGTGTAA+GGG + chr1_4:69797604-69797623 Msa0181560:intron 30.0%
TAAACTAAACCCTTACACTA+TGG - chr1_4:69797616-69797635 None:intergenic 30.0%
GGGGTTTAAAAACAAAGTAA+TGG + chr1_4:69797675-69797694 Msa0181560:intron 30.0%
GAAATAAGCATTTAAGAAGG+AGG + chr1_4:69797700-69797719 Msa0181560:intron 30.0%
AACATGATTGGCAATTTGAT+GGG - chr1_4:69797751-69797770 None:intergenic 30.0%
AAACATGATTGGCAATTTGA+TGG - chr1_4:69797752-69797771 None:intergenic 30.0%
TGTTTGACATCAAACATGAT+TGG - chr1_4:69797763-69797782 None:intergenic 30.0%
!! TGTTCACTTTTGTCTTCTTT+AGG - chr1_4:69797922-69797941 None:intergenic 30.0%
TATAAAAAAGACTAACCAGG+AGG - chr1_4:69797955-69797974 None:intergenic 30.0%
TGCTATAAAAAAGACTAACC+AGG - chr1_4:69797958-69797977 None:intergenic 30.0%
TTCTTATGAATCCAAAGGTA+AGG - chr1_4:69798104-69798123 None:intergenic 30.0%
CAAAATTGATTACACTATGC+CGG - chr1_4:69798180-69798199 None:intergenic 30.0%
! TTTTATCGTCGTTATAGAGA+AGG - chr1_4:69798317-69798336 None:intergenic 30.0%
! GAATTGTCATTTGAAGATAC+AGG + chr1_4:69798354-69798373 Msa0181560:three_prime_UTR 30.0%
AATAAATGATGTGACATGGC+AGG - chr1_4:69792647-69792666 None:intergenic 35.0%
AAGAGCAAAGTGAATTTCTG+GGG + chr1_4:69792668-69792687 Msa0181560:five_prime_UTR 35.0%
GCCATTAGATTCTTAGAGAT+AGG + chr1_4:69792706-69792725 Msa0181560:five_prime_UTR 35.0%
ATTTGATGTTGCAGTTGCTT+TGG - chr1_4:69792746-69792765 None:intergenic 35.0%
AGATTCTTCAAACCATTCCA+AGG - chr1_4:69792931-69792950 None:intergenic 35.0%
TTGGAATGGTTTGAAGAATC+TGG + chr1_4:69792930-69792949 Msa0181560:CDS 35.0%
TGGAATGGTTTGAAGAATCT+GGG + chr1_4:69792931-69792950 Msa0181560:CDS 35.0%
!! ATTTATGTGGTTCGGTACAT+AGG + chr1_4:69793386-69793405 Msa0181560:intron 35.0%
! TTATAGCATTTTAAGCAGCC+AGG + chr1_4:69793697-69793716 Msa0181560:intron 35.0%
! ACTTGTGATTAGTTGCTAGT+TGG + chr1_4:69793783-69793802 Msa0181560:intron 35.0%
AGAAGCAAAGGATGTCTATA+AGG + chr1_4:69794037-69794056 Msa0181560:intron 35.0%
AGTTGGAAAGAAGTTTCCTT+TGG + chr1_4:69794116-69794135 Msa0181560:intron 35.0%
AGTGACAATTGATAAGCCAA+AGG - chr1_4:69794135-69794154 None:intergenic 35.0%
ATCAGCATCTGGGTATTATT+TGG - chr1_4:69794337-69794356 None:intergenic 35.0%
AAATAATACCCAGATGCTGA+TGG + chr1_4:69794336-69794355 Msa0181560:intron 35.0%
! GCAGATTTGGTACATATTAC+AGG - chr1_4:69794365-69794384 None:intergenic 35.0%
GTAAAAAACCAAGATAGAGC+AGG - chr1_4:69794487-69794506 None:intergenic 35.0%
ATTACGAATGAAGGAATCTC+AGG - chr1_4:69794832-69794851 None:intergenic 35.0%
ATGAAGGAATCACAGAACAT+GGG - chr1_4:69794894-69794913 None:intergenic 35.0%
AATGAAGGAATCACAGAACA+TGG - chr1_4:69794895-69794914 None:intergenic 35.0%
AGTAGAAGATAATGCATTGC+CGG + chr1_4:69795030-69795049 Msa0181560:intron 35.0%
TGAAAGTTATACCGACATTC+AGG + chr1_4:69795059-69795078 Msa0181560:intron 35.0%
GAAAGTTATACCGACATTCA+GGG + chr1_4:69795060-69795079 Msa0181560:intron 35.0%
! ATTGTTGTTGCTATTGGTGA+TGG + chr1_4:69795202-69795221 Msa0181560:intron 35.0%
! TTGGTTGTTGTTATTGGTGA+TGG + chr1_4:69795252-69795271 Msa0181560:intron 35.0%
AAATCAAAGAATCAACCGAG+TGG - chr1_4:69795444-69795463 None:intergenic 35.0%
!! ATTTAAGAGTACCCTTGAAC+GGG + chr1_4:69795505-69795524 Msa0181560:CDS 35.0%
! AAGAGTACGTATTCTGAGTT+GGG - chr1_4:69795556-69795575 None:intergenic 35.0%
TTCTTCTTCAACAGATGGTA+TGG - chr1_4:69795836-69795855 None:intergenic 35.0%
CATATATTCCCACTACAATC+AGG - chr1_4:69795931-69795950 None:intergenic 35.0%
!! ATCTATTTTCATGACTTGGG+GGG - chr1_4:69795955-69795974 None:intergenic 35.0%
ACCATCCAATAAAGATCCAA+TGG + chr1_4:69796042-69796061 Msa0181560:intron 35.0%
ACCATTGGATCTTTATTGGA+TGG - chr1_4:69796046-69796065 None:intergenic 35.0%
!! TGATTGGGTGGTTTTTAAAG+GGG - chr1_4:69796215-69796234 None:intergenic 35.0%
! CTTTGGGTGTTTCTTTTGAT+TGG - chr1_4:69796231-69796250 None:intergenic 35.0%
TTCTTGCGTCATTACTCTTT+GGG - chr1_4:69796247-69796266 None:intergenic 35.0%
ATTCTTGCGTCATTACTCTT+TGG - chr1_4:69796248-69796267 None:intergenic 35.0%
AATTATCGTTATTGCTGCAC+TGG - chr1_4:69796348-69796367 None:intergenic 35.0%
GCCATATGATATGGTTATTG+AGG + chr1_4:69796604-69796623 Msa0181560:intron 35.0%
TTCCTATCTTTGTGAACTTC+AGG + chr1_4:69796749-69796768 Msa0181560:intron 35.0%
ATCCTGAAGTTCACAAAGAT+AGG - chr1_4:69796754-69796773 None:intergenic 35.0%
ACACAGATTGTGCATACATA+TGG - chr1_4:69796845-69796864 None:intergenic 35.0%
AGAACGTTACAATAAACGAG+TGG + chr1_4:69796962-69796981 Msa0181560:intron 35.0%
ATAATTAGAGCCAGAGACAA+CGG + chr1_4:69797094-69797113 Msa0181560:intron 35.0%
ACTAGGTAGGATTGACTATA+TGG - chr1_4:69797185-69797204 None:intergenic 35.0%
ATATAGTCAATCCTACCTAG+TGG + chr1_4:69797184-69797203 Msa0181560:intron 35.0%
ACAGTTGTACTAGCAATAGT+GGG - chr1_4:69797369-69797388 None:intergenic 35.0%
!! AGAGTATTGGACTTGAAAGA+AGG - chr1_4:69797424-69797443 None:intergenic 35.0%
ATTAAGCACTTCATCTCGAT+TGG + chr1_4:69797550-69797569 Msa0181560:intron 35.0%
CTATAACAATGTAGATGGGA+AGG + chr1_4:69797798-69797817 Msa0181560:intron 35.0%
GATTACAGAAGAGCAACTAA+AGG + chr1_4:69797861-69797880 Msa0181560:CDS 35.0%
!! ACTTTTGTCTTCTTTAGGAG+GGG - chr1_4:69797917-69797936 None:intergenic 35.0%
!! CACTTTTGTCTTCTTTAGGA+GGG - chr1_4:69797918-69797937 None:intergenic 35.0%
!! TCACTTTTGTCTTCTTTAGG+AGG - chr1_4:69797919-69797938 None:intergenic 35.0%
AAGGTGAAGATAAAGTCGAA+CGG - chr1_4:69798005-69798024 None:intergenic 35.0%
AAAGGTAAGGATTCACTTTC+TGG - chr1_4:69798091-69798110 None:intergenic 35.0%
AGAAAGTGAATCCTTACCTT+TGG + chr1_4:69798090-69798109 Msa0181560:CDS 35.0%
CGTACTTCTTATGAATCCAA+AGG - chr1_4:69798109-69798128 None:intergenic 35.0%
CGGGTAATGAACTGATAATT+GGG - chr1_4:69798142-69798161 None:intergenic 35.0%
CCAATTATCAGTTCATTACC+CGG + chr1_4:69798140-69798159 Msa0181560:three_prime_UTR 35.0%
TTTACACAACTCAAGTGACT+CGG - chr1_4:69798209-69798228 None:intergenic 35.0%
TTATAGAGAAGGAAGAGAGA+GGG - chr1_4:69798306-69798325 None:intergenic 35.0%
! CAAAGTGAATTTCTGGGGAA+GGG + chr1_4:69792673-69792692 Msa0181560:five_prime_UTR 40.0%
TAGAGATAGGATTGGAGCAA+AGG + chr1_4:69792719-69792738 Msa0181560:five_prime_UTR 40.0%
AGAGATAGGATTGGAGCAAA+GGG + chr1_4:69792720-69792739 Msa0181560:five_prime_UTR 40.0%
GAACATGTTCCTCCTAGTTT+AGG - chr1_4:69792853-69792872 None:intergenic 40.0%
CATTCCAAGGAGAGAAAAGA+CGG - chr1_4:69792918-69792937 None:intergenic 40.0%
TGGTTTATGCGTCTCTCTTT+GGG + chr1_4:69793097-69793116 Msa0181560:CDS 40.0%
TTCGGTACATAGGTTGTGTT+TGG + chr1_4:69793396-69793415 Msa0181560:intron 40.0%
! TGAGTCTTTGAGAGAGCTTA+GGG - chr1_4:69793598-69793617 None:intergenic 40.0%
! TTGAGTCTTTGAGAGAGCTT+AGG - chr1_4:69793599-69793618 None:intergenic 40.0%
CTACTTTGCAAGAGAAGCAA+AGG + chr1_4:69794025-69794044 Msa0181560:intron 40.0%
! GGTATTATTTGGCTTCTTGG+AGG - chr1_4:69794326-69794345 None:intergenic 40.0%
! CTGGGTATTATTTGGCTTCT+TGG - chr1_4:69794329-69794348 None:intergenic 40.0%
GGATTAAACCTGCTCTATCT+TGG + chr1_4:69794476-69794495 Msa0181560:intron 40.0%
ATCTTAGTGGCGGTTAAGAT+GGG - chr1_4:69794522-69794541 None:intergenic 40.0%
CGATCAATTCATCTTAGTGG+CGG - chr1_4:69794532-69794551 None:intergenic 40.0%
CGCCACTAAGATGAATTGAT+CGG + chr1_4:69794530-69794549 Msa0181560:intron 40.0%
CTCCGATCAATTCATCTTAG+TGG - chr1_4:69794535-69794554 None:intergenic 40.0%
AGTGTGATACCATGTGTTCT+TGG + chr1_4:69794589-69794608 Msa0181560:intron 40.0%
TATCTGCATCCAAGAACACA+TGG - chr1_4:69794601-69794620 None:intergenic 40.0%
GGTATAACTTTCACAGCAAC+CGG - chr1_4:69795052-69795071 None:intergenic 40.0%
AATTCACTAGAGTCCCTTTG+AGG + chr1_4:69795152-69795171 Msa0181560:intron 40.0%
! CAAGGCTTGGTTGTTGTTAT+TGG + chr1_4:69795246-69795265 Msa0181560:intron 40.0%
ACCTGCATTCAAAGAAACGA+GGG - chr1_4:69795313-69795332 None:intergenic 40.0%
AACCTGCATTCAAAGAAACG+AGG - chr1_4:69795314-69795333 None:intergenic 40.0%
ACTAACCTGGATCTCTCTAA+TGG - chr1_4:69795377-69795396 None:intergenic 40.0%
! CTTGCCATGTTTGCTCTTTT+AGG + chr1_4:69795469-69795488 Msa0181560:intron 40.0%
ACGTCCTAAAAGAGCAAACA+TGG - chr1_4:69795476-69795495 None:intergenic 40.0%
! GAAGAGTACGTATTCTGAGT+TGG - chr1_4:69795557-69795576 None:intergenic 40.0%
CTGAGAACCATTGGTACTAT+CGG - chr1_4:69795615-69795634 None:intergenic 40.0%
AGATGCTGGATAACTCACTA+GGG - chr1_4:69795649-69795668 None:intergenic 40.0%
TAGATGCTGGATAACTCACT+AGG - chr1_4:69795650-69795669 None:intergenic 40.0%
AGTTGCTAGGAGCAAGAAAA+TGG + chr1_4:69795862-69795881 Msa0181560:intron 40.0%
ACTAGAGAACCTGATTGTAG+TGG + chr1_4:69795919-69795938 Msa0181560:intron 40.0%
CTAGAGAACCTGATTGTAGT+GGG + chr1_4:69795920-69795939 Msa0181560:intron 40.0%
AATCTCAACCATTGGATGGT+TGG + chr1_4:69796003-69796022 Msa0181560:intron 40.0%
AACTTTGTCCAACCATCCAA+TGG - chr1_4:69796014-69796033 None:intergenic 40.0%
CATGTGGCAATTCAGTTCAT+TGG - chr1_4:69796717-69796736 None:intergenic 40.0%
GGAATACATTAGAGCACATG+TGG - chr1_4:69796733-69796752 None:intergenic 40.0%
TTATTCTACCATCCTCCATC+TGG - chr1_4:69797078-69797097 None:intergenic 40.0%
TAACCAAACCTCTTTCCACT+AGG - chr1_4:69797202-69797221 None:intergenic 40.0%
! AAGAGGTTTGGTTATCGTTG+TGG + chr1_4:69797208-69797227 Msa0181560:intron 40.0%
TGCATCCAACAAGTGTCTAT+GGG - chr1_4:69797309-69797328 None:intergenic 40.0%
TTGCATCCAACAAGTGTCTA+TGG - chr1_4:69797310-69797329 None:intergenic 40.0%
GACAGTTGTACTAGCAATAG+TGG - chr1_4:69797370-69797389 None:intergenic 40.0%
TTCCACAAACATGAAGAGTC+TGG + chr1_4:69797496-69797515 Msa0181560:intron 40.0%
TTGTCATGTTTCAACCATGC+AGG - chr1_4:69797584-69797603 None:intergenic 40.0%
TTTGGCTATAAAAGGGGTGA+TGG + chr1_4:69797638-69797657 Msa0181560:intron 40.0%
!! CTTTTGTCTTCTTTAGGAGG+GGG - chr1_4:69797916-69797935 None:intergenic 40.0%
ACCTTACTCTAAGCACGATT+TGG + chr1_4:69798020-69798039 Msa0181560:intron 40.0%
ACCAAATCGTGCTTAGAGTA+AGG - chr1_4:69798024-69798043 None:intergenic 40.0%
CCGGGTAATGAACTGATAAT+TGG - chr1_4:69798143-69798162 None:intergenic 40.0%
GTTATAGAGAAGGAAGAGAG+AGG - chr1_4:69798307-69798326 None:intergenic 40.0%
! GCAAAGTGAATTTCTGGGGA+AGG + chr1_4:69792672-69792691 Msa0181560:five_prime_UTR 45.0%
AAAGACGGTGACCCAATGAA+TGG - chr1_4:69792903-69792922 None:intergenic 45.0%
! CGTCTTTTCTCTCCTTGGAA+TGG + chr1_4:69792916-69792935 Msa0181560:CDS 45.0%
GATAGAAAGGGTCGGTGTAA+AGG + chr1_4:69793069-69793088 Msa0181560:intron 45.0%
GTGGTTTATGCGTCTCTCTT+TGG + chr1_4:69793096-69793115 Msa0181560:CDS 45.0%
GGTTTATGCGTCTCTCTTTG+GGG + chr1_4:69793098-69793117 Msa0181560:CDS 45.0%
CCCAATTACAAGAGCTTCAG+GGG - chr1_4:69793130-69793149 None:intergenic 45.0%
CCCCTGAAGCTCTTGTAATT+GGG + chr1_4:69793127-69793146 Msa0181560:CDS 45.0%
CCCCAATTACAAGAGCTTCA+GGG - chr1_4:69793131-69793150 None:intergenic 45.0%
CCCTGAAGCTCTTGTAATTG+GGG + chr1_4:69793128-69793147 Msa0181560:CDS 45.0%
ACCCCAATTACAAGAGCTTC+AGG - chr1_4:69793132-69793151 None:intergenic 45.0%
TCCAAACAGACTCCTTGTCA+AGG + chr1_4:69793666-69793685 Msa0181560:intron 45.0%
TCCTTGACAAGGAGTCTGTT+TGG - chr1_4:69793670-69793689 None:intergenic 45.0%
! TTGGTGATATGAGCTGCCTT+AGG + chr1_4:69793802-69793821 Msa0181560:intron 45.0%
ACAGGTATCCATCAGCATCT+GGG - chr1_4:69794347-69794366 None:intergenic 45.0%
TACAGGTATCCATCAGCATC+TGG - chr1_4:69794348-69794367 None:intergenic 45.0%
TCTTAGTGGCGGTTAAGATG+GGG - chr1_4:69794521-69794540 None:intergenic 45.0%
CATCTTAGTGGCGGTTAAGA+TGG - chr1_4:69794523-69794542 None:intergenic 45.0%
CCTGCATTCAAAGAAACGAG+GGG - chr1_4:69795312-69795331 None:intergenic 45.0%
AATGCAGGTTGCTCGAAATC+TGG + chr1_4:69795324-69795343 Msa0181560:intron 45.0%
ATGCAGGTTGCTCGAAATCT+GGG + chr1_4:69795325-69795344 Msa0181560:intron 45.0%
ACCTGGATCTCTCTAATGGT+GGG - chr1_4:69795373-69795392 None:intergenic 45.0%
AACCTGGATCTCTCTAATGG+TGG - chr1_4:69795374-69795393 None:intergenic 45.0%
! TTTGTTGTGCCAATGCCACT+CGG + chr1_4:69795426-69795445 Msa0181560:intron 45.0%
AAGAATCAACCGAGTGGCAT+TGG - chr1_4:69795438-69795457 None:intergenic 45.0%
AAGACCAATCTCCCGTTCAA+GGG - chr1_4:69795519-69795538 None:intergenic 45.0%
!! TGATGTGGTGTTGCGAACAT+TGG - chr1_4:69795579-69795598 None:intergenic 45.0%
TTGGTACTATCGGTGGATAG+TGG - chr1_4:69795605-69795624 None:intergenic 45.0%
CTATCCACCGATAGTACCAA+TGG + chr1_4:69795605-69795624 Msa0181560:CDS 45.0%
AGAACCATTGGTACTATCGG+TGG - chr1_4:69795612-69795631 None:intergenic 45.0%
AACAGCAGTCTGAGAACCAT+TGG - chr1_4:69795624-69795643 None:intergenic 45.0%
CTTATTAGTGCTTCTCGCAC+GGG - chr1_4:69796124-69796143 None:intergenic 45.0%
GCTTATTAGTGCTTCTCGCA+CGG - chr1_4:69796125-69796144 None:intergenic 45.0%
!! GCGAGAAGCACTAATAAGCT+CGG + chr1_4:69796126-69796145 Msa0181560:intron 45.0%
!! CGAGAAGCACTAATAAGCTC+GGG + chr1_4:69796127-69796146 Msa0181560:intron 45.0%
!! GGGTGTTTCTTTTGATTGGG+TGG - chr1_4:69796227-69796246 None:intergenic 45.0%
!! TCCTCTTTGGTATTGACGCA+GGG - chr1_4:69796297-69796316 None:intergenic 45.0%
TATCGTTATTGCTGCACTGG+TGG - chr1_4:69796345-69796364 None:intergenic 45.0%
TTCACTACAGCAGCAAATCC+TGG + chr1_4:69796380-69796399 Msa0181560:intron 45.0%
TGCTATATGACTGACAGACC+AGG - chr1_4:69796401-69796420 None:intergenic 45.0%
CAATCCTACCTAGTGGAAAG+AGG + chr1_4:69797191-69797210 Msa0181560:intron 45.0%
CAAACCTCTTTCCACTAGGT+AGG - chr1_4:69797198-69797217 None:intergenic 45.0%
CTACCTAGTGGAAAGAGGTT+TGG + chr1_4:69797196-69797215 Msa0181560:intron 45.0%
GTGTCTATGGGTCATCAACT+TGG - chr1_4:69797297-69797316 None:intergenic 45.0%
GATGACCCATAGACACTTGT+TGG + chr1_4:69797301-69797320 Msa0181560:intron 45.0%
!! ATGCTGCTCCATTTGGTTCT+AGG - chr1_4:69797467-69797486 None:intergenic 45.0%
AGAACCAAATGGAGCAGCAT+AGG + chr1_4:69797467-69797486 Msa0181560:intron 45.0%
CTCCAGACTCTTCATGTTTG+TGG - chr1_4:69797501-69797520 None:intergenic 45.0%
TTTCAACCATGCAGGCGATA+TGG - chr1_4:69797576-69797595 None:intergenic 45.0%
!! TATAAAAGGGGTGATGGTGG+TGG + chr1_4:69797644-69797663 Msa0181560:intron 45.0%
!! ATAAAAGGGGTGATGGTGGT+GGG + chr1_4:69797645-69797664 Msa0181560:intron 45.0%
TCAGAGCTGTATGCTCTACT+TGG - chr1_4:69797829-69797848 None:intergenic 45.0%
AAGTAGAGCATACAGCTCTG+AGG + chr1_4:69797828-69797847 Msa0181560:CDS 45.0%
!! GATTCACTTTCTGGCTTCTG+AGG - chr1_4:69798082-69798101 None:intergenic 45.0%
TCAGTTCATTACCCGGAATG+TGG + chr1_4:69798147-69798166 Msa0181560:three_prime_UTR 45.0%
CAGTTCATTACCCGGAATGT+GGG + chr1_4:69798148-69798167 Msa0181560:three_prime_UTR 45.0%
!! TAAAATATATATTAAAGAAA+AGG - chr1_4:69796635-69796654 None:intergenic 5.0%
!! TATTAAAATTAAACAAAAAT+TGG + chr1_4:69797018-69797037 Msa0181560:intron 5.0%
!! ATTAAAATTAAACAAAAATT+GGG + chr1_4:69797019-69797038 Msa0181560:intron 5.0%
! GTCACCGTCTTTTCTCTCCT+TGG + chr1_4:69792911-69792930 Msa0181560:CDS 50.0%
! TTATGCGTCTCTCTTTGGGG+TGG + chr1_4:69793101-69793120 Msa0181560:CDS 50.0%
!! TATGCGTCTCTCTTTGGGGT+GGG + chr1_4:69793102-69793121 Msa0181560:CDS 50.0%
GCCCCTGAAGCTCTTGTAAT+TGG + chr1_4:69793126-69793145 Msa0181560:CDS 50.0%
TGGTCCTAAAGGTCTTGCTG+AGG + chr1_4:69793170-69793189 Msa0181560:CDS 50.0%
CTGACCTCAGCAAGACCTTT+AGG - chr1_4:69793177-69793196 None:intergenic 50.0%
! ATAAGACCGGCTCCTTGACA+AGG - chr1_4:69793681-69793700 None:intergenic 50.0%
! GCATTTTAAGCAGCCAGGAG+AGG + chr1_4:69793702-69793721 Msa0181560:intron 50.0%
TCTAACACTTGGACCTCTCC+TGG - chr1_4:69793718-69793737 None:intergenic 50.0%
CAAGTTGTCAAGAGCGACCT+TGG - chr1_4:69793999-69794018 None:intergenic 50.0%
TTAGTGGCGGTTAAGATGGG+GGG - chr1_4:69794519-69794538 None:intergenic 50.0%
CTTAGTGGCGGTTAAGATGG+GGG - chr1_4:69794520-69794539 None:intergenic 50.0%
AATTGCCAAGGAACCGCACA+TGG - chr1_4:69794731-69794750 None:intergenic 50.0%
CCCCTCGTTTCTTTGAATGC+AGG + chr1_4:69795309-69795328 Msa0181560:intron 50.0%
ACCCACCATTAGAGAGATCC+AGG + chr1_4:69795369-69795388 Msa0181560:CDS 50.0%
AGTACCCTTGAACGGGAGAT+TGG + chr1_4:69795512-69795531 Msa0181560:CDS 50.0%
CAAGACCAATCTCCCGTTCA+AGG - chr1_4:69795520-69795539 None:intergenic 50.0%
! GAAGCACTAATAAGCTCGGG+TGG + chr1_4:69796130-69796149 Msa0181560:intron 50.0%
TCGGTTGCCATTCTATCACC+AGG + chr1_4:69796177-69796196 Msa0181560:intron 50.0%
GTTCGAGCCTGGTGATAGAA+TGG - chr1_4:69796187-69796206 None:intergenic 50.0%
! AAGGGGTTTTTGTTCGAGCC+TGG - chr1_4:69796198-69796217 None:intergenic 50.0%
!! CCTCTTTGGTATTGACGCAG+GGG - chr1_4:69796296-69796315 None:intergenic 50.0%
!! GTCCTCTTTGGTATTGACGC+AGG - chr1_4:69796298-69796317 None:intergenic 50.0%
AAGATGGAGGGTTGACCAGA+TGG + chr1_4:69797060-69797079 Msa0181560:intron 50.0%
GTTGCCTATGCTGCTCCATT+TGG - chr1_4:69797474-69797493 None:intergenic 50.0%
! GGCTATAAAAGGGGTGATGG+TGG + chr1_4:69797641-69797660 Msa0181560:intron 50.0%
!! TAAAAGGGGTGATGGTGGTG+GGG + chr1_4:69797646-69797665 Msa0181560:intron 50.0%
!! TCACTTTCTGGCTTCTGAGG+TGG - chr1_4:69798079-69798098 None:intergenic 50.0%
! ACACAACTCAAGTGACTCGG+AGG - chr1_4:69798206-69798225 None:intergenic 50.0%
TAGAGAAGGAAGAGAGAGGG+AGG - chr1_4:69798303-69798322 None:intergenic 50.0%
GGGTCGGTGTAAAGGTAACG+TGG + chr1_4:69793077-69793096 Msa0181560:CDS 55.0%
CAGACTCCTTGTCAAGGAGC+CGG + chr1_4:69793672-69793691 Msa0181560:intron 55.0%
GGCTATCTGTGAGCCATGTG+CGG + chr1_4:69794715-69794734 Msa0181560:intron 55.0%
CTTGTCCCACTACGTGGGAT+CGG - chr1_4:69795230-69795249 None:intergenic 55.0%
! CAAGCCTTGTCCCACTACGT+GGG - chr1_4:69795235-69795254 None:intergenic 55.0%
!! GGTGGATAGTGGAGCTGATG+TGG - chr1_4:69795594-69795613 None:intergenic 55.0%
CCCCTGCGTCAATACCAAAG+AGG + chr1_4:69796293-69796312 Msa0181560:intron 55.0%
! CGTTATTGCTGCACTGGTGG+TGG - chr1_4:69796342-69796361 None:intergenic 55.0%
ATGGAGGGTTGACCAGATGG+AGG + chr1_4:69797063-69797082 Msa0181560:intron 55.0%
AGGGTTGACCAGATGGAGGA+TGG + chr1_4:69797067-69797086 Msa0181560:intron 55.0%
! GATTGGCCATATCGCCTGCA+TGG + chr1_4:69797567-69797586 Msa0181560:intron 55.0%
!! AAAAGGGGTGATGGTGGTGG+GGG + chr1_4:69797647-69797666 Msa0181560:intron 55.0%
GAACAGCAAAGTCAGCCTCC+TGG + chr1_4:69797937-69797956 Msa0181560:CDS 55.0%
!! CTTTCTGGCTTCTGAGGTGG+TGG - chr1_4:69798076-69798095 None:intergenic 55.0%
GTGAGCCATGTGCGGTTCCT+TGG + chr1_4:69794723-69794742 Msa0181560:intron 60.0%
!! ATGGTGCCGATCCCACGTAG+TGG + chr1_4:69795221-69795240 Msa0181560:intron 60.0%
!! TGGTGCCGATCCCACGTAGT+GGG + chr1_4:69795222-69795241 Msa0181560:intron 60.0%
! CGATCCCACGTAGTGGGACA+AGG + chr1_4:69795228-69795247 Msa0181560:intron 60.0%
! CCAAGCCTTGTCCCACTACG+TGG - chr1_4:69795236-69795255 None:intergenic 60.0%
! CCACGTAGTGGGACAAGGCT+TGG + chr1_4:69795233-69795252 Msa0181560:intron 60.0%
GGGTCTTGCTGGGTCCTCTT+TGG - chr1_4:69796310-69796329 None:intergenic 60.0%
GAGTCGGTAGGGGTCTTGCT+GGG - chr1_4:69796320-69796339 None:intergenic 60.0%
!! ACTGGTGGTGGAGTCGGTAG+GGG - chr1_4:69796330-69796349 None:intergenic 60.0%
!! CACTGGTGGTGGAGTCGGTA+GGG - chr1_4:69796331-69796350 None:intergenic 60.0%
!! TGCTGCACTGGTGGTGGAGT+CGG - chr1_4:69796336-69796355 None:intergenic 60.0%
!! AAAGGGGTGATGGTGGTGGG+GGG + chr1_4:69797648-69797667 Msa0181560:intron 60.0%
CCGGTAGTTGCCCACATTCC+GGG - chr1_4:69798161-69798180 None:intergenic 60.0%
CCCGGAATGTGGGCAACTAC+CGG + chr1_4:69798158-69798177 Msa0181560:three_prime_UTR 60.0%
GCCGGTAGTTGCCCACATTC+CGG - chr1_4:69798162-69798181 None:intergenic 60.0%
TGCTTCTCGCACGGGCTCGT+CGG - chr1_4:69796116-69796135 None:intergenic 65.0%
GGAGTCGGTAGGGGTCTTGC+TGG - chr1_4:69796321-69796340 None:intergenic 65.0%
!! GCACTGGTGGTGGAGTCGGT+AGG - chr1_4:69796332-69796351 None:intergenic 65.0%
!! TGATGGTGGTGGGGGGTGGT+GGG + chr1_4:69797655-69797674 Msa0181560:intron 65.0%
GGCAGCTGCTGCACAACTGC+AGG + chr1_4:69797882-69797901 Msa0181560:CDS 65.0%
!! GTGATGGTGGTGGGGGGTGG+TGG + chr1_4:69797654-69797673 Msa0181560:intron 70.0%
!! GATGGTGGTGGGGGGTGGTG+GGG + chr1_4:69797656-69797675 Msa0181560:intron 70.0%
!! GGGGTGATGGTGGTGGGGGG+TGG + chr1_4:69797651-69797670 Msa0181560:intron 75.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 69792637 69798409 69792637 ID=Msa0181560;Name=Msa0181560
chr1_4 mRNA 69792637 69798409 69792637 ID=Msa0181560-mRNA-1;Parent=Msa0181560;Name=Msa0181560-mRNA-1;_AED=0.11;_eAED=0.11;_QI=168|1|1|1|1|1|6|289|249
chr1_4 exon 69792637 69792994 69792637 ID=Msa0181560-mRNA-1:exon:23251;Parent=Msa0181560-mRNA-1
chr1_4 exon 69793070 69793191 69793070 ID=Msa0181560-mRNA-1:exon:23252;Parent=Msa0181560-mRNA-1
chr1_4 exon 69795331 69795390 69795331 ID=Msa0181560-mRNA-1:exon:23253;Parent=Msa0181560-mRNA-1
chr1_4 exon 69795491 69795650 69795491 ID=Msa0181560-mRNA-1:exon:23254;Parent=Msa0181560-mRNA-1
chr1_4 exon 69797812 69797958 69797812 ID=Msa0181560-mRNA-1:exon:23255;Parent=Msa0181560-mRNA-1
chr1_4 exon 69798050 69798409 69798050 ID=Msa0181560-mRNA-1:exon:23256;Parent=Msa0181560-mRNA-1
chr1_4 five_prime_UTR 69792637 69792804 69792637 ID=Msa0181560-mRNA-1:five_prime_utr;Parent=Msa0181560-mRNA-1
chr1_4 CDS 69792805 69792994 69792805 ID=Msa0181560-mRNA-1:cds;Parent=Msa0181560-mRNA-1
chr1_4 CDS 69793070 69793191 69793070 ID=Msa0181560-mRNA-1:cds;Parent=Msa0181560-mRNA-1
chr1_4 CDS 69795331 69795390 69795331 ID=Msa0181560-mRNA-1:cds;Parent=Msa0181560-mRNA-1
chr1_4 CDS 69795491 69795650 69795491 ID=Msa0181560-mRNA-1:cds;Parent=Msa0181560-mRNA-1
chr1_4 CDS 69797812 69797958 69797812 ID=Msa0181560-mRNA-1:cds;Parent=Msa0181560-mRNA-1
chr1_4 CDS 69798050 69798120 69798050 ID=Msa0181560-mRNA-1:cds;Parent=Msa0181560-mRNA-1
chr1_4 three_prime_UTR 69798121 69798409 69798121 ID=Msa0181560-mRNA-1:three_prime_utr;Parent=Msa0181560-mRNA-1
Gene Sequence

>Msa0181560

ATGCTAACAGCAATTGCTTCTTCTAGTTCAACCATGTTATTATGTCCTAAACTAGGAGGAACATGTTCATATTCAAAAACCCAACATTTTTATCTCCATTCATTGGGTCACCGTCTTTTCTCTCCTTGGAATGGTTTGAAGAATCTGGGTTTCTCTATCAAGCCCAAAAAACCATTTTTTCGTATTATAGATAGAAAGGGTCGGTGTAAAGGTAACGTGGTTTATGCGTCTCTCTTTGGGGTGGGTGCCCCTGAAGCTCTTGTAATTGGGGTTGTTGCTTTGTTAGTTTTTGGTCCTAAAGGTCTTGCTGAGGTTGCTCGAAATCTGGGAAAAACATTGCGTGAATTTCAACCCACCATTAGAGAGATCCAGGACGTTTCAAGAGAATTTAAGAGTACCCTTGAACGGGAGATTGGTCTTGATGACATTTCAAACCCAACTCAGAATACGTACTCTTCCAATGTTCGCAACACCACATCAGCTCCACTATCCACCGATAGTACCAATGGTTCTCAGACTGCTGTTGACCCTAATGGGAAGGCAGATCCAAGTAGAGCATACAGCTCTGAGGATTATCTTAAGATTACAGAAGAGCAACTAAAGGCAGCTGCTGCACAACTGCAGGAGCAAACACCCCCTCCTAAAGAAGACAAAAGTGAACAGCAAAGTCAGCCTCCTGCTAATGAAACATCTGCAACTGTGCCACCACCTCAGAAGCCAGAAAGTGAATCCTTACCTTTGGATTCATAA

Protein sequence

>Msa0181560

MLTAIASSSSTMLLCPKLGGTCSYSKTQHFYLHSLGHRLFSPWNGLKNLGFSIKPKKPFFRIIDRKGRCKGNVVYASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLREFQPTIREIQDVSREFKSTLEREIGLDDISNPTQNTYSSNVRNTTSAPLSTDSTNGSQTAVDPNGKADPSRAYSSEDYLKITEEQLKAAAAQLQEQTPPPKEDKSEQQSQPPANETSATVPPPQKPESESLPLDS*