AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0184900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0184900 MtrunA17_Chr1g0202801 91.860 258 12 1 1 249 1 258 2.50e-162 449
Msa0184900 MtrunA17_Chr7g0274161 47.619 63 26 1 77 139 59 114 4.05e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0184900 AT5G52440.1 58.036 224 72 8 31 238 42 259 1.02e-66 207

Find 86 sgRNAs with CRISPR-Local

Find 393 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGGTAAGGATTCACTTTC+TGG 0.180828 1_4:-74524166 None:intergenic
GCCCCTGAAGCTCTTGTAAT+TGG 0.190403 1_4:+74519202 Msa0184900:CDS
TTAAGAGCAAAGTGAATTTC+TGG 0.200028 1_4:+74518742 Msa0184900:five_prime_UTR
TGGTTTATGCGTCTCTCTTT+GGG 0.224648 1_4:+74519173 Msa0184900:CDS
CCGGGTAATGAACTGATAAT+TGG 0.230141 1_4:-74524218 None:intergenic
TTGGAATGGTTTGAAGAATC+TGG 0.237555 1_4:+74519006 Msa0184900:CDS
GTGGTTTATGCGTCTCTCTT+TGG 0.244905 1_4:+74519172 Msa0184900:CDS
CCCCTGAAGCTCTTGTAATT+GGG 0.280358 1_4:+74519203 Msa0184900:CDS
AATGCAGGTTGCTCGAAATC+TGG 0.293696 1_4:+74521402 Msa0184900:intron
GCCGGTAGTTGCCCACATTC+CGG 0.329517 1_4:-74524237 None:intergenic
GAACATGTTCCTCCTAGTTT+AGG 0.340162 1_4:-74518926 None:intergenic
ACCCCAATTACAAGAGCTTC+AGG 0.344512 1_4:-74519205 None:intergenic
CTGACCTCAGCAAGACCTTT+AGG 0.358065 1_4:-74519250 None:intergenic
CCGGTAGTTGCCCACATTCC+GGG 0.372632 1_4:-74524236 None:intergenic
AGAAAGTGAATCCTTACCTT+TGG 0.373691 1_4:+74524168 Msa0184900:CDS
CTTTCTGGCTTCTGAGGTGG+TGG 0.383809 1_4:-74524151 None:intergenic
ATTTGATGTTGCAGTTGCTT+TGG 0.398510 1_4:-74518819 None:intergenic
GCCATTAGATTCTTAGAGAT+AGG 0.398583 1_4:+74518782 Msa0184900:five_prime_UTR
TCCTATCTCTAAGAATCTAA+TGG 0.411043 1_4:-74518783 None:intergenic
GGCAGCTGCTGCACAACTGC+AGG 0.416323 1_4:+74523960 Msa0184900:CDS
TTGATGTATTGAATGATGTT+TGG 0.433944 1_4:-74518848 None:intergenic
ACTAACCTGGATCTCTCTAA+TGG 0.439471 1_4:-74521452 None:intergenic
TAAGAGCAAAGTGAATTTCT+GGG 0.439567 1_4:+74518743 Msa0184900:five_prime_UTR
CGGGTAATGAACTGATAATT+GGG 0.441172 1_4:-74524217 None:intergenic
ATTTAAGAGTACCCTTGAAC+GGG 0.443904 1_4:+74521583 Msa0184900:CDS
AAGAGTACGTATTCTGAGTT+GGG 0.445136 1_4:-74521631 None:intergenic
AGTACCCTTGAACGGGAGAT+TGG 0.451217 1_4:+74521590 Msa0184900:CDS
GAATTGTCATTTGAAGATAC+AGG 0.452864 1_4:+74524432 Msa0184900:three_prime_UTR
GATTCACTTTCTGGCTTCTG+AGG 0.461812 1_4:-74524157 None:intergenic
GAAGAGTACGTATTCTGAGT+TGG 0.463633 1_4:-74521632 None:intergenic
TGGAATGGTTTGAAGAATCT+GGG 0.464571 1_4:+74519007 Msa0184900:CDS
TATGCGTCTCTCTTTGGGGT+GGG 0.475454 1_4:+74519178 Msa0184900:CDS
ACCCACCATTAGAGAGATCC+AGG 0.479518 1_4:+74521447 Msa0184900:CDS
TCAGAGCTGTATGCTCTACT+TGG 0.481001 1_4:-74523904 None:intergenic
TAGAGAAGGAAGAGAGAGGG+AGG 0.481971 1_4:-74524378 None:intergenic
TAGATTCTTAGAGATAGGAT+TGG 0.486220 1_4:+74518787 Msa0184900:five_prime_UTR
CCCGGAATGTGGGCAACTAC+CGG 0.486756 1_4:+74524236 Msa0184900:three_prime_UTR
AGAGATAGGATTGGAGCAAA+GGG 0.490946 1_4:+74518796 Msa0184900:five_prime_UTR
GATAGAAAGGGTCGGTGTAA+AGG 0.500755 1_4:+74519145 Msa0184900:intron
CCCTGAAGCTCTTGTAATTG+GGG 0.510021 1_4:+74519204 Msa0184900:CDS
TCACTTTCTGGCTTCTGAGG+TGG 0.512638 1_4:-74524154 None:intergenic
CAAGACCAATCTCCCGTTCA+AGG 0.514273 1_4:-74521595 None:intergenic
TTCTTATGAATCCAAAGGTA+AGG 0.518567 1_4:-74524179 None:intergenic
CCAATTATCAGTTCATTACC+CGG 0.519731 1_4:+74524218 Msa0184900:three_prime_UTR
ATGCAGGTTGCTCGAAATCT+GGG 0.519962 1_4:+74521403 Msa0184900:intron
CCCCAATTACAAGAGCTTCA+GGG 0.521995 1_4:-74519204 None:intergenic
CCCAATTACAAGAGCTTCAG+GGG 0.523540 1_4:-74519203 None:intergenic
AATAAATGATGTGACATGGC+AGG 0.524985 1_4:-74518720 None:intergenic
TAGAGATAGGATTGGAGCAA+AGG 0.526973 1_4:+74518795 Msa0184900:five_prime_UTR
AAAGACGGTGACCCAATGAA+TGG 0.530058 1_4:-74518976 None:intergenic
CAAAGTGAATTTCTGGGGAA+GGG 0.535086 1_4:+74518749 Msa0184900:five_prime_UTR
TCAGTTCATTACCCGGAATG+TGG 0.536688 1_4:+74524225 Msa0184900:three_prime_UTR
CTGAGAACCATTGGTACTAT+CGG 0.543826 1_4:-74521690 None:intergenic
AATTTAAGAGTACCCTTGAA+CGG 0.550071 1_4:+74521582 Msa0184900:CDS
CAAAATTGATTACACTATGC+CGG 0.554608 1_4:-74524255 None:intergenic
TTATAGAGAAGGAAGAGAGA+GGG 0.560302 1_4:-74524381 None:intergenic
GAACAGCAAAGTCAGCCTCC+TGG 0.562573 1_4:+74524015 Msa0184900:CDS
AACAGCAGTCTGAGAACCAT+TGG 0.563019 1_4:-74521699 None:intergenic
GGTTTATGCGTCTCTCTTTG+GGG 0.565629 1_4:+74519174 Msa0184900:CDS
GCAAAGTGAATTTCTGGGGA+AGG 0.568201 1_4:+74518748 Msa0184900:five_prime_UTR
GATTACAGAAGAGCAACTAA+AGG 0.568988 1_4:+74523939 Msa0184900:CDS
TTATGCGTCTCTCTTTGGGG+TGG 0.571962 1_4:+74519177 Msa0184900:CDS
CAGTTCATTACCCGGAATGT+GGG 0.575890 1_4:+74524226 Msa0184900:three_prime_UTR
CGTACTTCTTATGAATCCAA+AGG 0.578325 1_4:-74524184 None:intergenic
TTGGTACTATCGGTGGATAG+TGG 0.581780 1_4:-74521680 None:intergenic
ACCTGGATCTCTCTAATGGT+GGG 0.582822 1_4:-74521448 None:intergenic
AACCTGGATCTCTCTAATGG+TGG 0.586086 1_4:-74521449 None:intergenic
TGGTCCTAAAGGTCTTGCTG+AGG 0.586660 1_4:+74519246 Msa0184900:CDS
ATGTTATTATGTCCTAAACT+AGG 0.587873 1_4:+74518914 Msa0184900:CDS
CTATAACAATGTAGATGGGA+AGG 0.593214 1_4:+74523876 Msa0184900:intron
AGATTCTTCAAACCATTCCA+AGG 0.595262 1_4:-74519004 None:intergenic
TGATGTGGTGTTGCGAACAT+TGG 0.602856 1_4:-74521654 None:intergenic
TTTACACAACTCAAGTGACT+CGG 0.608976 1_4:-74524284 None:intergenic
AAGACCAATCTCCCGTTCAA+GGG 0.614541 1_4:-74521594 None:intergenic
CATTCCAAGGAGAGAAAAGA+CGG 0.620612 1_4:-74518991 None:intergenic
CTATCCACCGATAGTACCAA+TGG 0.620692 1_4:+74521683 Msa0184900:CDS
CTTAAATAAATGATGTGACA+TGG 0.625387 1_4:-74518724 None:intergenic
AAGAGCAAAGTGAATTTCTG+GGG 0.626095 1_4:+74518744 Msa0184900:five_prime_UTR
AGAACCATTGGTACTATCGG+TGG 0.637633 1_4:-74521687 None:intergenic
GTTATAGAGAAGGAAGAGAG+AGG 0.639426 1_4:-74524382 None:intergenic
GGTGGATAGTGGAGCTGATG+TGG 0.643992 1_4:-74521669 None:intergenic
TTATTATGTCCTAAACTAGG+AGG 0.663899 1_4:+74518917 Msa0184900:CDS
TAGTTTAGGACATAATAACA+TGG 0.692470 1_4:-74518912 None:intergenic
ACACAACTCAAGTGACTCGG+AGG 0.692637 1_4:-74524281 None:intergenic
AAGTAGAGCATACAGCTCTG+AGG 0.718115 1_4:+74523906 Msa0184900:CDS
GGGTCGGTGTAAAGGTAACG+TGG 0.723610 1_4:+74519153 Msa0184900:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTATTTTTTTTTTTTTGAAA+CGG + chr1_4:74522156-74522175 Msa0184900:intron 10.0%
!! GTAAAATATATATTAAGAAA+AGG - chr1_4:74522714-74522733 None:intergenic 10.0%
!!! CAATTCTATTTTATTTTTTA+TGG - chr1_4:74524418-74524437 None:intergenic 10.0%
!! AATTGGATATTAATTAGAAT+TGG - chr1_4:74520043-74520062 None:intergenic 15.0%
!!! TATTTTGTAAAATGTATAGA+GGG - chr1_4:74521069-74521088 None:intergenic 15.0%
!!! ATCTATTTTATTTTTATCTG+CGG + chr1_4:74521743-74521762 Msa0184900:intron 15.0%
!!! ATACGAAAAAATGGTTTTTT+GGG - chr1_4:74519046-74519065 None:intergenic 20.0%
!!! AATACGAAAAAATGGTTTTT+TGG - chr1_4:74519047-74519066 None:intergenic 20.0%
!!! AAACCATTTTTTCGTATTAT+AGG + chr1_4:74519049-74519068 Msa0184900:CDS 20.0%
!! ATACCTATAATACGAAAAAA+TGG - chr1_4:74519055-74519074 None:intergenic 20.0%
!! CAAATTAATCTGAATTACAT+AGG - chr1_4:74519318-74519337 None:intergenic 20.0%
!! AATGAATTATGAACACTTTA+AGG + chr1_4:74519954-74519973 Msa0184900:intron 20.0%
!! TTTATATCAATGTTCATTGA+AGG - chr1_4:74520239-74520258 None:intergenic 20.0%
!!! ACATAAAAGTAACAACTTTT+GGG - chr1_4:74520702-74520721 None:intergenic 20.0%
!!! AACATAAAAGTAACAACTTT+TGG - chr1_4:74520703-74520722 None:intergenic 20.0%
!! AATGTATAATAATACTTTCG+TGG + chr1_4:74520933-74520952 Msa0184900:intron 20.0%
!! GTCAAAAAAACAAAGATATA+CGG - chr1_4:74521021-74521040 None:intergenic 20.0%
!!! TGTTTTTTTGACATTGTTTA+AGG + chr1_4:74521029-74521048 Msa0184900:intron 20.0%
!!! GTTTTTTTGACATTGTTTAA+GGG + chr1_4:74521030-74521049 Msa0184900:intron 20.0%
!!! CTATTTTGTAAAATGTATAG+AGG - chr1_4:74521070-74521089 None:intergenic 20.0%
!! TCTCATTCAAAAATAATCAT+TGG - chr1_4:74521186-74521205 None:intergenic 20.0%
!!! AAAATAATTGTTGTTGCTAT+TGG + chr1_4:74521273-74521292 Msa0184900:intron 20.0%
!! GATAAAAATAAAATAGATGC+TGG - chr1_4:74521741-74521760 None:intergenic 20.0%
!!! TCTATTTTATTTTTATCTGC+GGG + chr1_4:74521744-74521763 Msa0184900:intron 20.0%
!! TATTTGATAAAATGCATATG+AGG - chr1_4:74521806-74521825 None:intergenic 20.0%
!!! TAGTTTTCAATTATAACCAT+TGG - chr1_4:74522139-74522158 None:intergenic 20.0%
!! ATAACTTGGAAATCTAATAA+TGG - chr1_4:74522602-74522621 None:intergenic 20.0%
!! ATTTATGTACTTCTAGATTT+AGG + chr1_4:74523326-74523345 Msa0184900:intron 20.0%
!! TATATCTATAACAATGTAGA+TGG + chr1_4:74523871-74523890 Msa0184900:intron 20.0%
!! ATATCTATAACAATGTAGAT+GGG + chr1_4:74523872-74523891 Msa0184900:intron 20.0%
! CTTAAATAAATGATGTGACA+TGG - chr1_4:74518727-74518746 None:intergenic 25.0%
! TTGATGTATTGAATGATGTT+TGG - chr1_4:74518851-74518870 None:intergenic 25.0%
!! TAGTTTAGGACATAATAACA+TGG - chr1_4:74518915-74518934 None:intergenic 25.0%
! ATGTTATTATGTCCTAAACT+AGG + chr1_4:74518914-74518933 Msa0184900:CDS 25.0%
! TGAATGGAGATAAAAATGTT+GGG - chr1_4:74518963-74518982 None:intergenic 25.0%
! ATGAATGGAGATAAAAATGT+TGG - chr1_4:74518964-74518983 None:intergenic 25.0%
!! ACATTTTTATCTCCATTCAT+TGG + chr1_4:74518964-74518983 Msa0184900:CDS 25.0%
!! CATTTTTATCTCCATTCATT+GGG + chr1_4:74518965-74518984 Msa0184900:CDS 25.0%
!! TCAACTTCTATTATCTCTTT+TGG + chr1_4:74519086-74519105 Msa0184900:intron 25.0%
!! CAACTTCTATTATCTCTTTT+GGG + chr1_4:74519087-74519106 Msa0184900:intron 25.0%
!! TACTCATTTTGTAGATAGAA+AGG + chr1_4:74519132-74519151 Msa0184900:intron 25.0%
!! ACTCATTTTGTAGATAGAAA+GGG + chr1_4:74519133-74519152 Msa0184900:intron 25.0%
! CATACTATTTCACTTTGTTA+AGG + chr1_4:74519399-74519418 Msa0184900:intron 25.0%
! TTATCACTTTCTGATTTATG+TGG + chr1_4:74519450-74519469 Msa0184900:intron 25.0%
! CTTATTTCGATAGATTCTTT+AGG - chr1_4:74519617-74519636 None:intergenic 25.0%
! TCTAATTGATATCTAACACT+TGG - chr1_4:74519806-74519825 None:intergenic 25.0%
! AATTAGTTGAATACTGTTTG+AGG + chr1_4:74519825-74519844 Msa0184900:intron 25.0%
! AGTTGTCATTAGTTATTAGT+TGG - chr1_4:74519991-74520010 None:intergenic 25.0%
! ACATGTTATTGACATTAGAA+AGG + chr1_4:74520150-74520169 Msa0184900:intron 25.0%
! ATTGTGAATATTTACGTTTG+TGG + chr1_4:74520350-74520369 Msa0184900:intron 25.0%
!!! TGTTAATTTTCAAGCAGATT+TGG - chr1_4:74520455-74520474 None:intergenic 25.0%
! AGAAAATATGAACTATGAAG+CGG - chr1_4:74520503-74520522 None:intergenic 25.0%
! GAATATGTATATTCATACAG+TGG + chr1_4:74520751-74520770 Msa0184900:intron 25.0%
! TGGACATGAAATTAATAACT+GGG + chr1_4:74520771-74520790 Msa0184900:intron 25.0%
! ATGCTACAAATAAGTTTGAA+AGG + chr1_4:74520841-74520860 Msa0184900:intron 25.0%
! TGCTACAAATAAGTTTGAAA+GGG + chr1_4:74520842-74520861 Msa0184900:intron 25.0%
! ACATTTAGTATTACGAATGA+AGG - chr1_4:74520918-74520937 None:intergenic 25.0%
! ATTATTTATACCCTGAATGT+CGG - chr1_4:74521150-74521169 None:intergenic 25.0%
! TGAGATTAACTTTAGATAGT+TGG + chr1_4:74521201-74521220 Msa0184900:intron 25.0%
! AACAAATTTAATCTACACTC+TGG - chr1_4:74521490-74521509 None:intergenic 25.0%
!!! CTATTTTATTTTTATCTGCG+GGG + chr1_4:74521745-74521764 Msa0184900:intron 25.0%
!!! AGATGATTGTTTTGTAAGAT+GGG - chr1_4:74521877-74521896 None:intergenic 25.0%
!! AAATCTATTTTCATGACTTG+GGG - chr1_4:74522035-74522054 None:intergenic 25.0%
!! CAAATCTATTTTCATGACTT+GGG - chr1_4:74522036-74522055 None:intergenic 25.0%
!!! ACAATTTTAATCTCAACCAT+TGG + chr1_4:74522073-74522092 Msa0184900:intron 25.0%
! TATAACCATTGGATCTTTAT+TGG - chr1_4:74522128-74522147 None:intergenic 25.0%
! TGGAGAGAAAAATACAATAA+GGG + chr1_4:74522229-74522248 Msa0184900:intron 25.0%
! AAAATACAATAAGGGGAAAT+CGG + chr1_4:74522237-74522256 Msa0184900:intron 25.0%
!! TATAGTAAATCTCTTTGAAG+GGG - chr1_4:74522528-74522547 None:intergenic 25.0%
! CTATAGTAAATCTCTTTGAA+GGG - chr1_4:74522529-74522548 None:intergenic 25.0%
! ACTATAGTAAATCTCTTTGA+AGG - chr1_4:74522530-74522549 None:intergenic 25.0%
! CAAAGAGATTTACTATAGTT+TGG + chr1_4:74522531-74522550 Msa0184900:intron 25.0%
! AACAAACTTCAATGATAACT+TGG - chr1_4:74522616-74522635 None:intergenic 25.0%
! AATAGAACATGATAAAAACG+AGG + chr1_4:74522754-74522773 Msa0184900:intron 25.0%
! CATATGGCAAAATAAAAGTA+AGG - chr1_4:74522907-74522926 None:intergenic 25.0%
! AATAAATCACTGAAGAACAA+AGG + chr1_4:74522959-74522978 Msa0184900:intron 25.0%
! GACATTACTAATAGCTAAAT+TGG + chr1_4:74523005-74523024 Msa0184900:intron 25.0%
!! ATATGTCATTTGTGACTATA+TGG - chr1_4:74523234-74523253 None:intergenic 25.0%
! ACTATTTATGAACAACGAAA+TGG - chr1_4:74523472-74523491 None:intergenic 25.0%
! GATGAAATAAGCATTTAAGA+AGG + chr1_4:74523775-74523794 Msa0184900:intron 25.0%
TTAAGAGCAAAGTGAATTTC+TGG + chr1_4:74518742-74518761 Msa0184900:five_prime_UTR 30.0%
TAAGAGCAAAGTGAATTTCT+GGG + chr1_4:74518743-74518762 Msa0184900:five_prime_UTR 30.0%
! TCCTATCTCTAAGAATCTAA+TGG - chr1_4:74518786-74518805 None:intergenic 30.0%
TAGATTCTTAGAGATAGGAT+TGG + chr1_4:74518787-74518806 Msa0184900:five_prime_UTR 30.0%
TTATTATGTCCTAAACTAGG+AGG + chr1_4:74518917-74518936 Msa0184900:CDS 30.0%
! ATTTTGTAGATAGAAAGGGT+CGG + chr1_4:74519137-74519156 Msa0184900:intron 30.0%
!!! GTTGTTGCTTTGTTAGTTTT+TGG + chr1_4:74519226-74519245 Msa0184900:CDS 30.0%
!!! TTGTTAGTTTTTGGTCCTAA+AGG + chr1_4:74519235-74519254 Msa0184900:CDS 30.0%
ACTTTCTGATTTATGTGGTT+CGG + chr1_4:74519455-74519474 Msa0184900:intron 30.0%
TGCTTAAAATGCTATAAGAC+CGG - chr1_4:74519771-74519790 None:intergenic 30.0%
CACTTTATATAGTGATCCTA+AGG - chr1_4:74519898-74519917 None:intergenic 30.0%
AATTGGTTGAATGTTGTTCA+AGG - chr1_4:74520026-74520045 None:intergenic 30.0%
TCCAATTATATCTAACACCA+AGG + chr1_4:74520056-74520075 Msa0184900:intron 30.0%
!! ACCTTGGTGTTAGATATAAT+TGG - chr1_4:74520060-74520079 None:intergenic 30.0%
!! ACAATTCTAGAGTGTTTAGT+TGG + chr1_4:74520176-74520195 Msa0184900:intron 30.0%
TGATACACAAACAAGCTATA+GGG - chr1_4:74520275-74520294 None:intergenic 30.0%
TTGATACACAAACAAGCTAT+AGG - chr1_4:74520276-74520295 None:intergenic 30.0%
! TGAATTTATCTGTTGCTTAG+TGG - chr1_4:74520533-74520552 None:intergenic 30.0%
ACTAAGCAACAGATAAATTC+AGG + chr1_4:74520532-74520551 Msa0184900:intron 30.0%
GTGGACATGAAATTAATAAC+TGG + chr1_4:74520770-74520789 Msa0184900:intron 30.0%
! GACATTTTATTCAATTGCCA+AGG - chr1_4:74520820-74520839 None:intergenic 30.0%
GCTACAAATAAGTTTGAAAG+GGG + chr1_4:74520843-74520862 Msa0184900:intron 30.0%
AAGCTTAGTATCATGAATGA+AGG - chr1_4:74520987-74521006 None:intergenic 30.0%
CAAAGATATACGGATATGTT+CGG - chr1_4:74521011-74521030 None:intergenic 30.0%
TTTGACATTGTTTAAGGGAA+AGG + chr1_4:74521035-74521054 Msa0184900:intron 30.0%
ATTGTTTAAGGGAAAGGATA+AGG + chr1_4:74521041-74521060 Msa0184900:intron 30.0%
TGTATCTAATAAGCCTCAAA+GGG - chr1_4:74521245-74521264 None:intergenic 30.0%
ATGTATCTAATAAGCCTCAA+AGG - chr1_4:74521246-74521265 None:intergenic 30.0%
!!! GAGAGTTTTTTAAACTAACC+TGG - chr1_4:74521468-74521487 None:intergenic 30.0%
!! AATTTAAGAGTACCCTTGAA+CGG + chr1_4:74521582-74521601 Msa0184900:CDS 30.0%
GAAAAATAGCATGCATATGA+TGG - chr1_4:74521840-74521859 None:intergenic 30.0%
!! CAGATGATTGTTTTGTAAGA+TGG - chr1_4:74521878-74521897 None:intergenic 30.0%
CTAAATTCTTCTTCAACAGA+TGG - chr1_4:74521919-74521938 None:intergenic 30.0%
AGAAGAATTTAGTAGTTGCT+AGG + chr1_4:74521927-74521946 Msa0184900:intron 30.0%
!! AATCTATTTTCATGACTTGG+GGG - chr1_4:74522034-74522053 None:intergenic 30.0%
! CCAAATCTATTTTCATGACT+TGG - chr1_4:74522037-74522056 None:intergenic 30.0%
CCAAGTCATGAAAATAGATT+TGG + chr1_4:74522034-74522053 Msa0184900:intron 30.0%
! TTTTAATCTCAACCATTGGA+TGG + chr1_4:74522077-74522096 Msa0184900:intron 30.0%
GTGGAGAGAAAAATACAATA+AGG + chr1_4:74522228-74522247 Msa0184900:intron 30.0%
GGAGAGAAAAATACAATAAG+GGG + chr1_4:74522230-74522249 Msa0184900:intron 30.0%
! TTGATTGGGTGGTTTTTAAA+GGG - chr1_4:74522295-74522314 None:intergenic 30.0%
! TTTGATTGGGTGGTTTTTAA+AGG - chr1_4:74522296-74522315 None:intergenic 30.0%
!! TTTGGGTGTTTCTTTTGATT+GGG - chr1_4:74522309-74522328 None:intergenic 30.0%
ACGCAAGAATATACATTTGA+CGG + chr1_4:74522337-74522356 Msa0184900:intron 30.0%
ATCACTAACGACTACAATTT+AGG - chr1_4:74522561-74522580 None:intergenic 30.0%
! CTTGGAAATCTAATAATGGA+AGG - chr1_4:74522598-74522617 None:intergenic 30.0%
CTATCAATTGCCATATGATA+TGG + chr1_4:74522674-74522693 Msa0184900:intron 30.0%
ACCTCAATAACCATATCATA+TGG - chr1_4:74522687-74522706 None:intergenic 30.0%
ATGGCAAAATAAAAGTAAGG+TGG - chr1_4:74522904-74522923 None:intergenic 30.0%
AATGTCATTCTAGATGTAAG+TGG - chr1_4:74522991-74523010 None:intergenic 30.0%
AGCTTCTATTGTAGAAAAGA+TGG + chr1_4:74523122-74523141 Msa0184900:intron 30.0%
TTCTATTGTAGAAAAGATGG+AGG + chr1_4:74523125-74523144 Msa0184900:intron 30.0%
TCTATTGTAGAAAAGATGGA+GGG + chr1_4:74523126-74523145 Msa0184900:intron 30.0%
! TATTAATTTTCCGTTGTCTC+TGG - chr1_4:74523185-74523204 None:intergenic 30.0%
CTAGTAATAGTTCACTTTCT+AGG - chr1_4:74523424-74523443 None:intergenic 30.0%
!! TTTTGGGGAAAAAAGAGTAT+TGG - chr1_4:74523515-74523534 None:intergenic 30.0%
!!! GTTCTAGGAACTTTTTTTTG+GGG - chr1_4:74523530-74523549 None:intergenic 30.0%
!!! GGTTCTAGGAACTTTTTTTT+GGG - chr1_4:74523531-74523550 None:intergenic 30.0%
!!! TGGTTCTAGGAACTTTTTTT+TGG - chr1_4:74523532-74523551 None:intergenic 30.0%
AAAAAGTTCCTAGAACCAAA+TGG + chr1_4:74523534-74523553 Msa0184900:intron 30.0%
!! ATTATTTCTGCCATAGTGTA+AGG + chr1_4:74523681-74523700 Msa0184900:intron 30.0%
GGGGTTTAAAAACAAAGTAA+TGG + chr1_4:74523753-74523772 Msa0184900:intron 30.0%
GAAATAAGCATTTAAGAAGG+AGG + chr1_4:74523778-74523797 Msa0184900:intron 30.0%
AACATGATTGGCAATTTGAT+GGG - chr1_4:74523829-74523848 None:intergenic 30.0%
AAACATGATTGGCAATTTGA+TGG - chr1_4:74523830-74523849 None:intergenic 30.0%
TGTTTGACATCAAACATGAT+TGG - chr1_4:74523841-74523860 None:intergenic 30.0%
!! TGTTCACTTTTGTCTTCTTT+AGG - chr1_4:74524000-74524019 None:intergenic 30.0%
TATAAAAAAGACTAACCAGG+AGG - chr1_4:74524033-74524052 None:intergenic 30.0%
TGCTATAAAAAAGACTAACC+AGG - chr1_4:74524036-74524055 None:intergenic 30.0%
TTCTTATGAATCCAAAGGTA+AGG - chr1_4:74524182-74524201 None:intergenic 30.0%
CAAAATTGATTACACTATGC+CGG - chr1_4:74524258-74524277 None:intergenic 30.0%
! TTTTATCGTCGTTATAGAGA+AGG - chr1_4:74524395-74524414 None:intergenic 30.0%
! GAATTGTCATTTGAAGATAC+AGG + chr1_4:74524432-74524451 Msa0184900:three_prime_UTR 30.0%
AATAAATGATGTGACATGGC+AGG - chr1_4:74518723-74518742 None:intergenic 35.0%
AAGAGCAAAGTGAATTTCTG+GGG + chr1_4:74518744-74518763 Msa0184900:five_prime_UTR 35.0%
GCCATTAGATTCTTAGAGAT+AGG + chr1_4:74518782-74518801 Msa0184900:five_prime_UTR 35.0%
ATTTGATGTTGCAGTTGCTT+TGG - chr1_4:74518822-74518841 None:intergenic 35.0%
AGATTCTTCAAACCATTCCA+AGG - chr1_4:74519007-74519026 None:intergenic 35.0%
TTGGAATGGTTTGAAGAATC+TGG + chr1_4:74519006-74519025 Msa0184900:CDS 35.0%
TGGAATGGTTTGAAGAATCT+GGG + chr1_4:74519007-74519026 Msa0184900:CDS 35.0%
!! ATTTATGTGGTTCGGTACAT+AGG + chr1_4:74519463-74519482 Msa0184900:intron 35.0%
! TTATAGCATTTTAAGCAGCC+AGG + chr1_4:74519774-74519793 Msa0184900:intron 35.0%
! ACTTGTGATTAGTTGCTAGT+TGG + chr1_4:74519860-74519879 Msa0184900:intron 35.0%
AGAAGCAAAGGATGTCTATA+AGG + chr1_4:74520114-74520133 Msa0184900:intron 35.0%
AGTTGGAAAGAAGTTTCCTT+TGG + chr1_4:74520193-74520212 Msa0184900:intron 35.0%
AGTGACAATTGATAAGCCAA+AGG - chr1_4:74520212-74520231 None:intergenic 35.0%
ATCAGCATCTGGGTATTATT+TGG - chr1_4:74520414-74520433 None:intergenic 35.0%
AAATAATACCCAGATGCTGA+TGG + chr1_4:74520413-74520432 Msa0184900:intron 35.0%
! GCAGATTTGGTACATATTAC+AGG - chr1_4:74520442-74520461 None:intergenic 35.0%
GTAAAAAACCAAGATAGAGC+AGG - chr1_4:74520564-74520583 None:intergenic 35.0%
ATTACGAATGAAGGAATCTC+AGG - chr1_4:74520909-74520928 None:intergenic 35.0%
ATGAAGGAATCACAGAACAT+GGG - chr1_4:74520971-74520990 None:intergenic 35.0%
AATGAAGGAATCACAGAACA+TGG - chr1_4:74520972-74520991 None:intergenic 35.0%
AGTAGAAGATAATGCATTGC+CGG + chr1_4:74521107-74521126 Msa0184900:intron 35.0%
TGAAAGTTATACCGACATTC+AGG + chr1_4:74521136-74521155 Msa0184900:intron 35.0%
GAAAGTTATACCGACATTCA+GGG + chr1_4:74521137-74521156 Msa0184900:intron 35.0%
! ATTGTTGTTGCTATTGGTGA+TGG + chr1_4:74521279-74521298 Msa0184900:intron 35.0%
! TTGGTTGTTGTTATTGGTGA+TGG + chr1_4:74521329-74521348 Msa0184900:intron 35.0%
!!! TTACTTTTTTGATAGCCCCT+CGG + chr1_4:74521371-74521390 Msa0184900:intron 35.0%
AAATCAAAGAATCAACCGAG+TGG - chr1_4:74521522-74521541 None:intergenic 35.0%
!! ATTTAAGAGTACCCTTGAAC+GGG + chr1_4:74521583-74521602 Msa0184900:CDS 35.0%
! AAGAGTACGTATTCTGAGTT+GGG - chr1_4:74521634-74521653 None:intergenic 35.0%
TTCTTCTTCAACAGATGGTA+TGG - chr1_4:74521914-74521933 None:intergenic 35.0%
CATATATTCCCACTACAATC+AGG - chr1_4:74522009-74522028 None:intergenic 35.0%
!! ATCTATTTTCATGACTTGGG+GGG - chr1_4:74522033-74522052 None:intergenic 35.0%
ACCATCCAATAAAGATCCAA+TGG + chr1_4:74522120-74522139 Msa0184900:intron 35.0%
ACCATTGGATCTTTATTGGA+TGG - chr1_4:74522124-74522143 None:intergenic 35.0%
!! TGATTGGGTGGTTTTTAAAG+GGG - chr1_4:74522294-74522313 None:intergenic 35.0%
! CTTTGGGTGTTTCTTTTGAT+TGG - chr1_4:74522310-74522329 None:intergenic 35.0%
TTCTTGCGTCATTACTCTTT+GGG - chr1_4:74522326-74522345 None:intergenic 35.0%
ATTCTTGCGTCATTACTCTT+TGG - chr1_4:74522327-74522346 None:intergenic 35.0%
AATTATCGTTATTGCTGCAC+TGG - chr1_4:74522427-74522446 None:intergenic 35.0%
GCCATATGATATGGTTATTG+AGG + chr1_4:74522683-74522702 Msa0184900:intron 35.0%
TTCCTATCTTTGTGAACTTC+AGG + chr1_4:74522827-74522846 Msa0184900:intron 35.0%
ATCCTGAAGTTCACAAAGAT+AGG - chr1_4:74522832-74522851 None:intergenic 35.0%
ACACAGATTGTGCATACATA+TGG - chr1_4:74522923-74522942 None:intergenic 35.0%
AGAACGTTACAATAAACGAG+TGG + chr1_4:74523040-74523059 Msa0184900:intron 35.0%
ATAATTAGAGCCAGAGACAA+CGG + chr1_4:74523172-74523191 Msa0184900:intron 35.0%
ACTAGGTAGGATTGACTATA+TGG - chr1_4:74523263-74523282 None:intergenic 35.0%
ATATAGTCAATCCTACCTAG+TGG + chr1_4:74523262-74523281 Msa0184900:intron 35.0%
ACAGTTGTACTAGCAATAGT+GGG - chr1_4:74523447-74523466 None:intergenic 35.0%
!! AGAGTATTGGACTTGAAAGA+AGG - chr1_4:74523502-74523521 None:intergenic 35.0%
ATTAAGCACTTCATCTCGAT+TGG + chr1_4:74523628-74523647 Msa0184900:intron 35.0%
CTATAACAATGTAGATGGGA+AGG + chr1_4:74523876-74523895 Msa0184900:intron 35.0%
GATTACAGAAGAGCAACTAA+AGG + chr1_4:74523939-74523958 Msa0184900:CDS 35.0%
!! ACTTTTGTCTTCTTTAGGAG+GGG - chr1_4:74523995-74524014 None:intergenic 35.0%
!! CACTTTTGTCTTCTTTAGGA+GGG - chr1_4:74523996-74524015 None:intergenic 35.0%
!! TCACTTTTGTCTTCTTTAGG+AGG - chr1_4:74523997-74524016 None:intergenic 35.0%
AAGGTGAAGATAAAGTCGAA+CGG - chr1_4:74524083-74524102 None:intergenic 35.0%
AAAGGTAAGGATTCACTTTC+TGG - chr1_4:74524169-74524188 None:intergenic 35.0%
AGAAAGTGAATCCTTACCTT+TGG + chr1_4:74524168-74524187 Msa0184900:CDS 35.0%
CGTACTTCTTATGAATCCAA+AGG - chr1_4:74524187-74524206 None:intergenic 35.0%
CGGGTAATGAACTGATAATT+GGG - chr1_4:74524220-74524239 None:intergenic 35.0%
CCAATTATCAGTTCATTACC+CGG + chr1_4:74524218-74524237 Msa0184900:three_prime_UTR 35.0%
TTTACACAACTCAAGTGACT+CGG - chr1_4:74524287-74524306 None:intergenic 35.0%
TTATAGAGAAGGAAGAGAGA+GGG - chr1_4:74524384-74524403 None:intergenic 35.0%
! CAAAGTGAATTTCTGGGGAA+GGG + chr1_4:74518749-74518768 Msa0184900:five_prime_UTR 40.0%
TAGAGATAGGATTGGAGCAA+AGG + chr1_4:74518795-74518814 Msa0184900:five_prime_UTR 40.0%
AGAGATAGGATTGGAGCAAA+GGG + chr1_4:74518796-74518815 Msa0184900:five_prime_UTR 40.0%
GAACATGTTCCTCCTAGTTT+AGG - chr1_4:74518929-74518948 None:intergenic 40.0%
CATTCCAAGGAGAGAAAAGA+CGG - chr1_4:74518994-74519013 None:intergenic 40.0%
TGGTTTATGCGTCTCTCTTT+GGG + chr1_4:74519173-74519192 Msa0184900:CDS 40.0%
TTCGGTACATAGGTTGTGTT+TGG + chr1_4:74519473-74519492 Msa0184900:intron 40.0%
! TGAGTCTTTGAGAGAGCTTA+GGG - chr1_4:74519675-74519694 None:intergenic 40.0%
! TTGAGTCTTTGAGAGAGCTT+AGG - chr1_4:74519676-74519695 None:intergenic 40.0%
CTACTTTGCAAGAGAAGCAA+AGG + chr1_4:74520102-74520121 Msa0184900:intron 40.0%
! GGTATTATTTGGCTTCTTGG+AGG - chr1_4:74520403-74520422 None:intergenic 40.0%
! CTGGGTATTATTTGGCTTCT+TGG - chr1_4:74520406-74520425 None:intergenic 40.0%
GGATTAAACCTGCTCTATCT+TGG + chr1_4:74520553-74520572 Msa0184900:intron 40.0%
ATCTTAGTGGCGGTTAAGAT+GGG - chr1_4:74520599-74520618 None:intergenic 40.0%
CGATCAATTCATCTTAGTGG+CGG - chr1_4:74520609-74520628 None:intergenic 40.0%
CGCCACTAAGATGAATTGAT+CGG + chr1_4:74520607-74520626 Msa0184900:intron 40.0%
CTCCGATCAATTCATCTTAG+TGG - chr1_4:74520612-74520631 None:intergenic 40.0%
AGTGTGATACCATGTGTTCT+TGG + chr1_4:74520666-74520685 Msa0184900:intron 40.0%
TATCTGCATCCAAGAACACA+TGG - chr1_4:74520678-74520697 None:intergenic 40.0%
GGTATAACTTTCACAGCAAC+CGG - chr1_4:74521129-74521148 None:intergenic 40.0%
AATTCACTAGAGTCCCTTTG+AGG + chr1_4:74521229-74521248 Msa0184900:intron 40.0%
! CAAGGCTTGGTTGTTGTTAT+TGG + chr1_4:74521323-74521342 Msa0184900:intron 40.0%
ACTAACCTGGATCTCTCTAA+TGG - chr1_4:74521455-74521474 None:intergenic 40.0%
! CTTGCCATGTTTGCTCTTTT+AGG + chr1_4:74521547-74521566 Msa0184900:intron 40.0%
ACGTCCTAAAAGAGCAAACA+TGG - chr1_4:74521554-74521573 None:intergenic 40.0%
! GAAGAGTACGTATTCTGAGT+TGG - chr1_4:74521635-74521654 None:intergenic 40.0%
CTGAGAACCATTGGTACTAT+CGG - chr1_4:74521693-74521712 None:intergenic 40.0%
AGATGCTGGATAACTCACTA+GGG - chr1_4:74521727-74521746 None:intergenic 40.0%
TAGATGCTGGATAACTCACT+AGG - chr1_4:74521728-74521747 None:intergenic 40.0%
AGTTGCTAGGAGCAAGAAAA+TGG + chr1_4:74521940-74521959 Msa0184900:intron 40.0%
ACTAGAGAACCTGATTGTAG+TGG + chr1_4:74521997-74522016 Msa0184900:intron 40.0%
CTAGAGAACCTGATTGTAGT+GGG + chr1_4:74521998-74522017 Msa0184900:intron 40.0%
AATCTCAACCATTGGATGGT+TGG + chr1_4:74522081-74522100 Msa0184900:intron 40.0%
AACTTTGTCCAACCATCCAA+TGG - chr1_4:74522092-74522111 None:intergenic 40.0%
CATGTGGCAATTCAGTTCAT+TGG - chr1_4:74522795-74522814 None:intergenic 40.0%
GGAATACATTAGAGCACATG+TGG - chr1_4:74522811-74522830 None:intergenic 40.0%
TTATTCTACCATCCTCCATC+TGG - chr1_4:74523156-74523175 None:intergenic 40.0%
TAACCAAACCTCTTTCCACT+AGG - chr1_4:74523280-74523299 None:intergenic 40.0%
! AAGAGGTTTGGTTATCGTTG+TGG + chr1_4:74523286-74523305 Msa0184900:intron 40.0%
TGCATCCAACAAGTGTCTAT+GGG - chr1_4:74523387-74523406 None:intergenic 40.0%
TTGCATCCAACAAGTGTCTA+TGG - chr1_4:74523388-74523407 None:intergenic 40.0%
GACAGTTGTACTAGCAATAG+TGG - chr1_4:74523448-74523467 None:intergenic 40.0%
TTCCACAAACATGAAGAGTC+TGG + chr1_4:74523574-74523593 Msa0184900:intron 40.0%
TTGTCATGTTTCAACCATGC+AGG - chr1_4:74523662-74523681 None:intergenic 40.0%
TTTGGCTATAAAAGGGGTGA+TGG + chr1_4:74523716-74523735 Msa0184900:intron 40.0%
!! CTTTTGTCTTCTTTAGGAGG+GGG - chr1_4:74523994-74524013 None:intergenic 40.0%
ACCTTACTCTAAGCACGATT+TGG + chr1_4:74524098-74524117 Msa0184900:intron 40.0%
ACCAAATCGTGCTTAGAGTA+AGG - chr1_4:74524102-74524121 None:intergenic 40.0%
CCGGGTAATGAACTGATAAT+TGG - chr1_4:74524221-74524240 None:intergenic 40.0%
GTTATAGAGAAGGAAGAGAG+AGG - chr1_4:74524385-74524404 None:intergenic 40.0%
! GCAAAGTGAATTTCTGGGGA+AGG + chr1_4:74518748-74518767 Msa0184900:five_prime_UTR 45.0%
AAAGACGGTGACCCAATGAA+TGG - chr1_4:74518979-74518998 None:intergenic 45.0%
! CGTCTTTTCTCTCCTTGGAA+TGG + chr1_4:74518992-74519011 Msa0184900:CDS 45.0%
GATAGAAAGGGTCGGTGTAA+AGG + chr1_4:74519145-74519164 Msa0184900:intron 45.0%
GTGGTTTATGCGTCTCTCTT+TGG + chr1_4:74519172-74519191 Msa0184900:CDS 45.0%
GGTTTATGCGTCTCTCTTTG+GGG + chr1_4:74519174-74519193 Msa0184900:CDS 45.0%
CCCAATTACAAGAGCTTCAG+GGG - chr1_4:74519206-74519225 None:intergenic 45.0%
CCCCTGAAGCTCTTGTAATT+GGG + chr1_4:74519203-74519222 Msa0184900:CDS 45.0%
CCCCAATTACAAGAGCTTCA+GGG - chr1_4:74519207-74519226 None:intergenic 45.0%
CCCTGAAGCTCTTGTAATTG+GGG + chr1_4:74519204-74519223 Msa0184900:CDS 45.0%
ACCCCAATTACAAGAGCTTC+AGG - chr1_4:74519208-74519227 None:intergenic 45.0%
TCCAAACAGACTCCTTGTCA+AGG + chr1_4:74519743-74519762 Msa0184900:intron 45.0%
TCCTTGACAAGGAGTCTGTT+TGG - chr1_4:74519747-74519766 None:intergenic 45.0%
! TTGGTGATATGAGCTGCCTT+AGG + chr1_4:74519879-74519898 Msa0184900:intron 45.0%
ACAGGTATCCATCAGCATCT+GGG - chr1_4:74520424-74520443 None:intergenic 45.0%
TACAGGTATCCATCAGCATC+TGG - chr1_4:74520425-74520444 None:intergenic 45.0%
TCTTAGTGGCGGTTAAGATG+GGG - chr1_4:74520598-74520617 None:intergenic 45.0%
CATCTTAGTGGCGGTTAAGA+TGG - chr1_4:74520600-74520619 None:intergenic 45.0%
CTGCATTCAAAGAAACCGAG+GGG - chr1_4:74521389-74521408 None:intergenic 45.0%
CCTGCATTCAAAGAAACCGA+GGG - chr1_4:74521390-74521409 None:intergenic 45.0%
ACCTGCATTCAAAGAAACCG+AGG - chr1_4:74521391-74521410 None:intergenic 45.0%
AATGCAGGTTGCTCGAAATC+TGG + chr1_4:74521402-74521421 Msa0184900:intron 45.0%
ATGCAGGTTGCTCGAAATCT+GGG + chr1_4:74521403-74521422 Msa0184900:intron 45.0%
ACCTGGATCTCTCTAATGGT+GGG - chr1_4:74521451-74521470 None:intergenic 45.0%
AACCTGGATCTCTCTAATGG+TGG - chr1_4:74521452-74521471 None:intergenic 45.0%
! TTTGTTGTGCCAATGCCACT+CGG + chr1_4:74521504-74521523 Msa0184900:intron 45.0%
AAGAATCAACCGAGTGGCAT+TGG - chr1_4:74521516-74521535 None:intergenic 45.0%
AAGACCAATCTCCCGTTCAA+GGG - chr1_4:74521597-74521616 None:intergenic 45.0%
!! TGATGTGGTGTTGCGAACAT+TGG - chr1_4:74521657-74521676 None:intergenic 45.0%
TTGGTACTATCGGTGGATAG+TGG - chr1_4:74521683-74521702 None:intergenic 45.0%
CTATCCACCGATAGTACCAA+TGG + chr1_4:74521683-74521702 Msa0184900:CDS 45.0%
AGAACCATTGGTACTATCGG+TGG - chr1_4:74521690-74521709 None:intergenic 45.0%
AACAGCAGTCTGAGAACCAT+TGG - chr1_4:74521702-74521721 None:intergenic 45.0%
CTTATTAGTGCTTCTCGCAC+GGG - chr1_4:74522203-74522222 None:intergenic 45.0%
GCTTATTAGTGCTTCTCGCA+CGG - chr1_4:74522204-74522223 None:intergenic 45.0%
!! GCGAGAAGCACTAATAAGCT+CGG + chr1_4:74522205-74522224 Msa0184900:intron 45.0%
!! CGAGAAGCACTAATAAGCTC+GGG + chr1_4:74522206-74522225 Msa0184900:intron 45.0%
!! GGGTGTTTCTTTTGATTGGG+TGG - chr1_4:74522306-74522325 None:intergenic 45.0%
!! TCCTCTTTGGTATTGACGCA+GGG - chr1_4:74522376-74522395 None:intergenic 45.0%
TATCGTTATTGCTGCACTGG+TGG - chr1_4:74522424-74522443 None:intergenic 45.0%
TTCACTACAGCAGCAAATCC+TGG + chr1_4:74522459-74522478 Msa0184900:intron 45.0%
TGCTATATGACTGACAGACC+AGG - chr1_4:74522480-74522499 None:intergenic 45.0%
CAATCCTACCTAGTGGAAAG+AGG + chr1_4:74523269-74523288 Msa0184900:intron 45.0%
CAAACCTCTTTCCACTAGGT+AGG - chr1_4:74523276-74523295 None:intergenic 45.0%
CTACCTAGTGGAAAGAGGTT+TGG + chr1_4:74523274-74523293 Msa0184900:intron 45.0%
GTGTCTATGGGTCATCAACT+TGG - chr1_4:74523375-74523394 None:intergenic 45.0%
GATGACCCATAGACACTTGT+TGG + chr1_4:74523379-74523398 Msa0184900:intron 45.0%
!! ATGCTGCTCCATTTGGTTCT+AGG - chr1_4:74523545-74523564 None:intergenic 45.0%
AGAACCAAATGGAGCAGCAT+AGG + chr1_4:74523545-74523564 Msa0184900:intron 45.0%
CTCCAGACTCTTCATGTTTG+TGG - chr1_4:74523579-74523598 None:intergenic 45.0%
TTTCAACCATGCAGGCGATA+TGG - chr1_4:74523654-74523673 None:intergenic 45.0%
!! TATAAAAGGGGTGATGGTGG+TGG + chr1_4:74523722-74523741 Msa0184900:intron 45.0%
!! ATAAAAGGGGTGATGGTGGT+GGG + chr1_4:74523723-74523742 Msa0184900:intron 45.0%
TCAGAGCTGTATGCTCTACT+TGG - chr1_4:74523907-74523926 None:intergenic 45.0%
AAGTAGAGCATACAGCTCTG+AGG + chr1_4:74523906-74523925 Msa0184900:CDS 45.0%
!! GATTCACTTTCTGGCTTCTG+AGG - chr1_4:74524160-74524179 None:intergenic 45.0%
TCAGTTCATTACCCGGAATG+TGG + chr1_4:74524225-74524244 Msa0184900:three_prime_UTR 45.0%
CAGTTCATTACCCGGAATGT+GGG + chr1_4:74524226-74524245 Msa0184900:three_prime_UTR 45.0%
!! TATTAAAATTAAACAAAAAT+TGG + chr1_4:74523096-74523115 Msa0184900:intron 5.0%
!! ATTAAAATTAAACAAAAATT+GGG + chr1_4:74523097-74523116 Msa0184900:intron 5.0%
! GTCACCGTCTTTTCTCTCCT+TGG + chr1_4:74518987-74519006 Msa0184900:CDS 50.0%
! TTATGCGTCTCTCTTTGGGG+TGG + chr1_4:74519177-74519196 Msa0184900:CDS 50.0%
!! TATGCGTCTCTCTTTGGGGT+GGG + chr1_4:74519178-74519197 Msa0184900:CDS 50.0%
GCCCCTGAAGCTCTTGTAAT+TGG + chr1_4:74519202-74519221 Msa0184900:CDS 50.0%
TGGTCCTAAAGGTCTTGCTG+AGG + chr1_4:74519246-74519265 Msa0184900:CDS 50.0%
CTGACCTCAGCAAGACCTTT+AGG - chr1_4:74519253-74519272 None:intergenic 50.0%
! ATAAGACCGGCTCCTTGACA+AGG - chr1_4:74519758-74519777 None:intergenic 50.0%
! GCATTTTAAGCAGCCAGGAG+AGG + chr1_4:74519779-74519798 Msa0184900:intron 50.0%
TCTAACACTTGGACCTCTCC+TGG - chr1_4:74519795-74519814 None:intergenic 50.0%
CAAGTTGTCAAGAGCGACCT+TGG - chr1_4:74520076-74520095 None:intergenic 50.0%
TTAGTGGCGGTTAAGATGGG+GGG - chr1_4:74520596-74520615 None:intergenic 50.0%
CTTAGTGGCGGTTAAGATGG+GGG - chr1_4:74520597-74520616 None:intergenic 50.0%
AATTGCCAAGGAACCGCACA+TGG - chr1_4:74520808-74520827 None:intergenic 50.0%
CCCTCGGTTTCTTTGAATGC+AGG + chr1_4:74521387-74521406 Msa0184900:intron 50.0%
ACCCACCATTAGAGAGATCC+AGG + chr1_4:74521447-74521466 Msa0184900:CDS 50.0%
AGTACCCTTGAACGGGAGAT+TGG + chr1_4:74521590-74521609 Msa0184900:CDS 50.0%
CAAGACCAATCTCCCGTTCA+AGG - chr1_4:74521598-74521617 None:intergenic 50.0%
! GAAGCACTAATAAGCTCGGG+TGG + chr1_4:74522209-74522228 Msa0184900:intron 50.0%
TCGGTTGCCATTCTATCACC+AGG + chr1_4:74522256-74522275 Msa0184900:intron 50.0%
GTTCGAGCCTGGTGATAGAA+TGG - chr1_4:74522266-74522285 None:intergenic 50.0%
! AAGGGGTTTTTGTTCGAGCC+TGG - chr1_4:74522277-74522296 None:intergenic 50.0%
!! CCTCTTTGGTATTGACGCAG+GGG - chr1_4:74522375-74522394 None:intergenic 50.0%
!! GTCCTCTTTGGTATTGACGC+AGG - chr1_4:74522377-74522396 None:intergenic 50.0%
AAGATGGAGGGTTGACCAGA+TGG + chr1_4:74523138-74523157 Msa0184900:intron 50.0%
GTTGCCTATGCTGCTCCATT+TGG - chr1_4:74523552-74523571 None:intergenic 50.0%
! GGCTATAAAAGGGGTGATGG+TGG + chr1_4:74523719-74523738 Msa0184900:intron 50.0%
!! TAAAAGGGGTGATGGTGGTG+GGG + chr1_4:74523724-74523743 Msa0184900:intron 50.0%
!! TCACTTTCTGGCTTCTGAGG+TGG - chr1_4:74524157-74524176 None:intergenic 50.0%
! ACACAACTCAAGTGACTCGG+AGG - chr1_4:74524284-74524303 None:intergenic 50.0%
TAGAGAAGGAAGAGAGAGGG+AGG - chr1_4:74524381-74524400 None:intergenic 50.0%
GGGTCGGTGTAAAGGTAACG+TGG + chr1_4:74519153-74519172 Msa0184900:CDS 55.0%
CAGACTCCTTGTCAAGGAGC+CGG + chr1_4:74519749-74519768 Msa0184900:intron 55.0%
GGCTATCTGTGAGCCATGTG+CGG + chr1_4:74520792-74520811 Msa0184900:intron 55.0%
CTTGTCCCACTACGTGGGAT+CGG - chr1_4:74521307-74521326 None:intergenic 55.0%
! CAAGCCTTGTCCCACTACGT+GGG - chr1_4:74521312-74521331 None:intergenic 55.0%
!! GGTGGATAGTGGAGCTGATG+TGG - chr1_4:74521672-74521691 None:intergenic 55.0%
CCCCTGCGTCAATACCAAAG+AGG + chr1_4:74522372-74522391 Msa0184900:intron 55.0%
! CGTTATTGCTGCACTGGTGG+TGG - chr1_4:74522421-74522440 None:intergenic 55.0%
ATGGAGGGTTGACCAGATGG+AGG + chr1_4:74523141-74523160 Msa0184900:intron 55.0%
AGGGTTGACCAGATGGAGGA+TGG + chr1_4:74523145-74523164 Msa0184900:intron 55.0%
! GATTGGCCATATCGCCTGCA+TGG + chr1_4:74523645-74523664 Msa0184900:intron 55.0%
!! AAAAGGGGTGATGGTGGTGG+GGG + chr1_4:74523725-74523744 Msa0184900:intron 55.0%
GAACAGCAAAGTCAGCCTCC+TGG + chr1_4:74524015-74524034 Msa0184900:CDS 55.0%
!! CTTTCTGGCTTCTGAGGTGG+TGG - chr1_4:74524154-74524173 None:intergenic 55.0%
GTGAGCCATGTGCGGTTCCT+TGG + chr1_4:74520800-74520819 Msa0184900:intron 60.0%
!! ATGGTGCCGATCCCACGTAG+TGG + chr1_4:74521298-74521317 Msa0184900:intron 60.0%
!! TGGTGCCGATCCCACGTAGT+GGG + chr1_4:74521299-74521318 Msa0184900:intron 60.0%
! CGATCCCACGTAGTGGGACA+AGG + chr1_4:74521305-74521324 Msa0184900:intron 60.0%
! CCAAGCCTTGTCCCACTACG+TGG - chr1_4:74521313-74521332 None:intergenic 60.0%
! CCACGTAGTGGGACAAGGCT+TGG + chr1_4:74521310-74521329 Msa0184900:intron 60.0%
GGGTCTTGCTGGGTCCTCTT+TGG - chr1_4:74522389-74522408 None:intergenic 60.0%
GAGTCGGTAGGGGTCTTGCT+GGG - chr1_4:74522399-74522418 None:intergenic 60.0%
!! ACTGGTGGTGGAGTCGGTAG+GGG - chr1_4:74522409-74522428 None:intergenic 60.0%
!! CACTGGTGGTGGAGTCGGTA+GGG - chr1_4:74522410-74522429 None:intergenic 60.0%
!! TGCTGCACTGGTGGTGGAGT+CGG - chr1_4:74522415-74522434 None:intergenic 60.0%
!! AAAGGGGTGATGGTGGTGGG+GGG + chr1_4:74523726-74523745 Msa0184900:intron 60.0%
CCGGTAGTTGCCCACATTCC+GGG - chr1_4:74524239-74524258 None:intergenic 60.0%
CCCGGAATGTGGGCAACTAC+CGG + chr1_4:74524236-74524255 Msa0184900:three_prime_UTR 60.0%
GCCGGTAGTTGCCCACATTC+CGG - chr1_4:74524240-74524259 None:intergenic 60.0%
TGCTTCTCGCACGGGCTCGT+CGG - chr1_4:74522195-74522214 None:intergenic 65.0%
GGAGTCGGTAGGGGTCTTGC+TGG - chr1_4:74522400-74522419 None:intergenic 65.0%
!! GCACTGGTGGTGGAGTCGGT+AGG - chr1_4:74522411-74522430 None:intergenic 65.0%
!! TGATGGTGGTGGGGGGTGGT+GGG + chr1_4:74523733-74523752 Msa0184900:intron 65.0%
GGCAGCTGCTGCACAACTGC+AGG + chr1_4:74523960-74523979 Msa0184900:CDS 65.0%
!! GTGATGGTGGTGGGGGGTGG+TGG + chr1_4:74523732-74523751 Msa0184900:intron 70.0%
!! GATGGTGGTGGGGGGTGGTG+GGG + chr1_4:74523734-74523753 Msa0184900:intron 70.0%
!! GGGGTGATGGTGGTGGGGGG+TGG + chr1_4:74523729-74523748 Msa0184900:intron 75.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 74518713 74524487 74518713 ID=Msa0184900;Name=Msa0184900
chr1_4 mRNA 74518713 74524487 74518713 ID=Msa0184900-mRNA-1;Parent=Msa0184900;Name=Msa0184900-mRNA-1;_AED=0.11;_eAED=0.11;_QI=168|1|1|1|1|1|6|289|249
chr1_4 exon 74518713 74519070 74518713 ID=Msa0184900-mRNA-1:exon:25434;Parent=Msa0184900-mRNA-1
chr1_4 exon 74519146 74519267 74519146 ID=Msa0184900-mRNA-1:exon:25435;Parent=Msa0184900-mRNA-1
chr1_4 exon 74521409 74521468 74521409 ID=Msa0184900-mRNA-1:exon:25436;Parent=Msa0184900-mRNA-1
chr1_4 exon 74521569 74521728 74521569 ID=Msa0184900-mRNA-1:exon:25437;Parent=Msa0184900-mRNA-1
chr1_4 exon 74523890 74524036 74523890 ID=Msa0184900-mRNA-1:exon:25438;Parent=Msa0184900-mRNA-1
chr1_4 exon 74524128 74524487 74524128 ID=Msa0184900-mRNA-1:exon:25439;Parent=Msa0184900-mRNA-1
chr1_4 five_prime_UTR 74518713 74518880 74518713 ID=Msa0184900-mRNA-1:five_prime_utr;Parent=Msa0184900-mRNA-1
chr1_4 CDS 74518881 74519070 74518881 ID=Msa0184900-mRNA-1:cds;Parent=Msa0184900-mRNA-1
chr1_4 CDS 74519146 74519267 74519146 ID=Msa0184900-mRNA-1:cds;Parent=Msa0184900-mRNA-1
chr1_4 CDS 74521409 74521468 74521409 ID=Msa0184900-mRNA-1:cds;Parent=Msa0184900-mRNA-1
chr1_4 CDS 74521569 74521728 74521569 ID=Msa0184900-mRNA-1:cds;Parent=Msa0184900-mRNA-1
chr1_4 CDS 74523890 74524036 74523890 ID=Msa0184900-mRNA-1:cds;Parent=Msa0184900-mRNA-1
chr1_4 CDS 74524128 74524198 74524128 ID=Msa0184900-mRNA-1:cds;Parent=Msa0184900-mRNA-1
chr1_4 three_prime_UTR 74524199 74524487 74524199 ID=Msa0184900-mRNA-1:three_prime_utr;Parent=Msa0184900-mRNA-1
Gene Sequence

>Msa0184900

ATGCTAACAGCAATTGCTTCTTCTAGTTCAACCATGTTATTATGTCCTAAACTAGGAGGAACATGTTCATATTCAAAAACCCAACATTTTTATCTCCATTCATTGGGTCACCGTCTTTTCTCTCCTTGGAATGGTTTGAAGAATCTGGGTTTCTCTATCAAGCCCAAAAAACCATTTTTTCGTATTATAGATAGAAAGGGTCGGTGTAAAGGTAACGTGGTTTATGCGTCTCTCTTTGGGGTGGGTGCCCCTGAAGCTCTTGTAATTGGGGTTGTTGCTTTGTTAGTTTTTGGTCCTAAAGGTCTTGCTGAGGTTGCTCGAAATCTGGGAAAAACATTGCGTGAATTTCAACCCACCATTAGAGAGATCCAGGACGTTTCAAGAGAATTTAAGAGTACCCTTGAACGGGAGATTGGTCTTGATGACATTTCAAACCCAACTCAGAATACGTACTCTTCCAATGTTCGCAACACCACATCAGCTCCACTATCCACCGATAGTACCAATGGTTCTCAGACTGCTGTTGACCCTAATGGGAAGGCAGATCCAAGTAGAGCATACAGCTCTGAGGATTATCTTAAGATTACAGAAGAGCAACTAAAGGCAGCTGCTGCACAACTGCAGGAGCAAACACCCCCTCCTAAAGAAGACAAAAGTGAACAGCAAAGTCAGCCTCCTGCTAATGAAACATCTGCAACTGTGCCACCACCTCAGAAGCCAGAAAGTGAATCCTTACCTTTGGATTCATAA

Protein sequence

>Msa0184900

MLTAIASSSSTMLLCPKLGGTCSYSKTQHFYLHSLGHRLFSPWNGLKNLGFSIKPKKPFFRIIDRKGRCKGNVVYASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLREFQPTIREIQDVSREFKSTLEREIGLDDISNPTQNTYSSNVRNTTSAPLSTDSTNGSQTAVDPNGKADPSRAYSSEDYLKITEEQLKAAAAQLQEQTPPPKEDKSEQQSQPPANETSATVPPPQKPESESLPLDS*