AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0163400


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0163400 MtrunA17_Chr1g0178341 94.792 192 9 1 1 192 1 191 1.30e-132 369
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0163400 AT2G36145.1 66.667 129 39 2 67 192 58 185 2.91e-55 174

Find 85 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGTTATCTTGTTGGAAAT+TGG 0.165195 1_4:+41563797 Msa0163400:three_prime_UTR
ATTCGATTCCCTGCTCTTTC+AGG 0.177129 1_4:+41562458 Msa0163400:CDS
CATAAGGCTCCTCATGATTC+TGG 0.186944 1_4:-41563519 None:intergenic
TCAAAATACAAAGATTGTTT+TGG 0.243300 1_4:-41563740 None:intergenic
CTTCTTCTCCCACACAAGTA+TGG 0.304767 1_4:-41562152 None:intergenic
TGTCTGGTCGCTTGGAAAAC+TGG 0.306117 1_4:-41563461 None:intergenic
TGATAATGCTTCATTTGTTC+AGG 0.327051 1_4:-41562079 None:intergenic
ATCTTTCATGCGCCCATGTC+TGG 0.333077 1_4:-41563477 None:intergenic
TACCCGATGGAGCAAGATTA+GGG 0.335971 1_4:+41563363 Msa0163400:CDS
TAGAATGAAAGTTATCTTGT+TGG 0.343400 1_4:+41563790 Msa0163400:three_prime_UTR
GTAGCTTCCCGCGGAAACTT+TGG 0.350020 1_4:-41562367 None:intergenic
TAGCTTCCCGCGGAAACTTT+GGG 0.356606 1_4:-41562366 None:intergenic
CAGAATCATGAGGAGCCTTA+TGG 0.369861 1_4:+41563520 Msa0163400:CDS
CTGCCTAATAGTAAACTTGC+AGG 0.372404 1_4:+41563602 Msa0163400:three_prime_UTR
GATTAGGGTTTATAGACATT+GGG 0.375229 1_4:+41563378 Msa0163400:CDS
TCTTGTGTATATTGACTGTT+TGG 0.377674 1_4:+41563412 Msa0163400:CDS
CAATGTTAAGTGGAAGTATA+AGG 0.386707 1_4:+41562187 Msa0163400:CDS
ACTGGAGGAGAACTTTCATT+TGG 0.403885 1_4:-41563443 None:intergenic
TACTACAAGTGAGTTATGAT+TGG 0.404231 1_4:+41563694 Msa0163400:three_prime_UTR
TGCGCCCATGTCTGGTCGCT+TGG 0.407246 1_4:-41563469 None:intergenic
CGACGACGATGGAGTCTCTC+TGG 0.408665 1_4:+41562398 Msa0163400:CDS
ATACCCGATGGAGCAAGATT+AGG 0.409412 1_4:+41563362 Msa0163400:CDS
CATACTTGTGTGGGAGAAGA+AGG 0.416767 1_4:+41562153 Msa0163400:five_prime_UTR
ATAAGGCTCCTCATGATTCT+GGG 0.426970 1_4:-41563518 None:intergenic
AGTATGCAGCTGAGAGGAAC+AGG 0.429627 1_4:+41562228 Msa0163400:CDS
TATGTTGACAGGCAGCTTCA+TGG 0.433103 1_4:-41562424 None:intergenic
GTGGGCAAACAGCCTTTGCC+AGG 0.448746 1_4:+41562690 Msa0163400:intron
CACCCTGCAAGTTTACTATT+AGG 0.448803 1_4:-41563605 None:intergenic
TCAGGTTTCTGTGGAACAAA+TGG 0.450442 1_4:-41562061 None:intergenic
AACCCTAATCTTGCTCCATC+GGG 0.456873 1_4:-41563365 None:intergenic
AGATTAGGGTTTATAGACAT+TGG 0.474730 1_4:+41563377 Msa0163400:CDS
AAACCCTAATCTTGCTCCAT+CGG 0.485972 1_4:-41563366 None:intergenic
CTCTGAAGGTCTATGTTGAC+AGG 0.491476 1_4:-41562435 None:intergenic
ACTACAAGTGAGTTATGATT+GGG 0.496582 1_4:+41563695 Msa0163400:three_prime_UTR
ATATATATACCTGAAAGAGC+AGG 0.507742 1_4:-41562467 None:intergenic
GGCTATGAAGCACGAGAGAA+TGG 0.509927 1_4:-41562320 None:intergenic
CAAGTTTACTATTAGGCAGA+AGG 0.511743 1_4:-41563598 None:intergenic
CTCATGATTCTGGGCTCACC+CGG 0.516530 1_4:-41563509 None:intergenic
AAAGTGGTAGACTGGCTCCC+TGG 0.531601 1_4:-41562708 None:intergenic
ACTTCTGAAGAGCTTCCATA+AGG 0.531730 1_4:-41563535 None:intergenic
GAGACTCCATCGTCGTCGGT+GGG 0.532066 1_4:-41562393 None:intergenic
CATGAAAGATAAGGTGCCGC+CGG 0.533196 1_4:+41563490 Msa0163400:CDS
AGGCGTGGAAAGTGGTAGAC+TGG 0.536072 1_4:-41562716 None:intergenic
TGGGTGCCGCCACCGTGAGA+TGG 0.538827 1_4:-41562347 None:intergenic
GTAGACTGGCTCCCTGGCAA+AGG 0.542128 1_4:-41562702 None:intergenic
TTCATTTGTTCAGGTTTCTG+TGG 0.542753 1_4:-41562070 None:intergenic
CATAACTAATGTTGTATATG+TGG 0.547143 1_4:+41563764 Msa0163400:three_prime_UTR
AGAGACTCCATCGTCGTCGG+TGG 0.551810 1_4:-41562394 None:intergenic
GTTCAGATTGCCTCATTGTG+AGG 0.553621 1_4:+41563560 Msa0163400:CDS
AAAGACATGGCAATGTTAAG+TGG 0.558136 1_4:+41562177 Msa0163400:exon
ACCACTTTCCACGCCTCTCA+AGG 0.558258 1_4:+41562723 Msa0163400:CDS
TCATAGCCGCTTCCATCTCA+CGG 0.563505 1_4:+41562335 Msa0163400:CDS
ATGAAAGATAAGGTGCCGCC+GGG 0.567047 1_4:+41563491 Msa0163400:CDS
ACCTTGAGAGGCGTGGAAAG+TGG 0.572117 1_4:-41562724 None:intergenic
TGAATGAGGGAGTGCTGAGA+AGG 0.573174 1_4:-41562273 None:intergenic
CCGCTTCCATCTCACGGTGG+CGG 0.573530 1_4:+41562341 Msa0163400:CDS
CCGCCACCGTGAGATGGAAG+CGG 0.579890 1_4:-41562341 None:intergenic
TGTTGTGATAACTATGAATG+AGG 0.580965 1_4:-41562287 None:intergenic
GCGGCACCCAAAGTTTCCGC+GGG 0.582964 1_4:+41562360 Msa0163400:CDS
ACATGGGCGCATGAAAGATA+AGG 0.585008 1_4:+41563481 Msa0163400:CDS
AGGGAGTGCTGAGAAGGCAG+TGG 0.586484 1_4:-41562267 None:intergenic
AGTTACAAACCATACTTGTG+TGG 0.589727 1_4:+41562143 Msa0163400:five_prime_UTR
ATTAGGGTTTATAGACATTG+GGG 0.590232 1_4:+41563379 Msa0163400:CDS
TTATATATGTGTACCTTGAG+AGG 0.592519 1_4:-41562736 None:intergenic
GACGACGATGGAGTCTCTCT+GGG 0.598218 1_4:+41562399 Msa0163400:CDS
GGCGGCACCCAAAGTTTCCG+CGG 0.598516 1_4:+41562359 Msa0163400:CDS
AGACTCCATCGTCGTCGGTG+GGG 0.604451 1_4:-41562392 None:intergenic
TATATATACCTGAAAGAGCA+GGG 0.607634 1_4:-41562466 None:intergenic
GTTACAAACCATACTTGTGT+GGG 0.609655 1_4:+41562144 Msa0163400:five_prime_UTR
TGGGCAAACAGCCTTTGCCA+GGG 0.611651 1_4:+41562691 Msa0163400:CDS
CAGAGAGACTCCATCGTCGT+CGG 0.615294 1_4:-41562397 None:intergenic
ATACTTGTGTGGGAGAAGAA+GGG 0.618695 1_4:+41562154 Msa0163400:five_prime_UTR
GTTGTGATAACTATGAATGA+GGG 0.624477 1_4:-41562286 None:intergenic
GCAGGGAATCGAATCTCTGA+AGG 0.624992 1_4:-41562449 None:intergenic
TGCCTAATAGTAAACTTGCA+GGG 0.635903 1_4:+41563603 Msa0163400:three_prime_UTR
TACAGCCCCACCGACGACGA+TGG 0.636039 1_4:+41562387 Msa0163400:CDS
CAGGTTGACAAAATACCCGA+TGG 0.647625 1_4:+41563350 Msa0163400:intron
GGTGGGGCTGTAGCTTCCCG+CGG 0.664372 1_4:-41562376 None:intergenic
CTGGTCGCTTGGAAAACTGG+AGG 0.670468 1_4:-41563458 None:intergenic
TATGTGTACCTTGAGAGGCG+TGG 0.685226 1_4:-41562731 None:intergenic
ATGATTCTGGGCTCACCCGG+CGG 0.687233 1_4:-41563506 None:intergenic
CGGGTGAGCCCAGAATCATG+AGG 0.694987 1_4:+41563510 Msa0163400:CDS
GGGAGAAGAAGGGAAAGACA+TGG 0.707832 1_4:+41562164 Msa0163400:exon
TGCTTGAGTATGCAGCTGAG+AGG 0.735580 1_4:+41562222 Msa0163400:CDS
TAGCCGCTTCCATCTCACGG+TGG 0.794636 1_4:+41562338 Msa0163400:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTATTTTTTTCGACTAA+AGG - chr1_4:41562105-41562124 None:intergenic 15.0%
!! TATATTATACTACTATGTTT+AGG + chr1_4:41562485-41562504 Msa0163400:intron 15.0%
!! GTTAAATATAAGAATAATGT+TGG - chr1_4:41562601-41562620 None:intergenic 15.0%
!!! AAATTTCAAGTTAAACTAAT+AGG - chr1_4:41562806-41562825 None:intergenic 15.0%
!! TATAATTTGAATTTCTAACT+AGG - chr1_4:41562992-41563011 None:intergenic 15.0%
!! TTAGAAATTCAAATTATAGA+TGG + chr1_4:41562994-41563013 Msa0163400:intron 15.0%
!! TCATTTCAATTTAATAAAAC+AGG + chr1_4:41563331-41563350 Msa0163400:intron 15.0%
!!! TATTTATTTTTTTCGACTAA+AGG - chr1_4:41562105-41562124 None:intergenic 15.0%
!! TATATTATACTACTATGTTT+AGG + chr1_4:41562485-41562504 Msa0163400:intron 15.0%
!! GTTAAATATAAGAATAATGT+TGG - chr1_4:41562601-41562620 None:intergenic 15.0%
!!! AAATTTCAAGTTAAACTAAT+AGG - chr1_4:41562806-41562825 None:intergenic 15.0%
!! TATAATTTGAATTTCTAACT+AGG - chr1_4:41562992-41563011 None:intergenic 15.0%
!! TTAGAAATTCAAATTATAGA+TGG + chr1_4:41562994-41563013 Msa0163400:intron 15.0%
!! TCATTTCAATTTAATAAAAC+AGG + chr1_4:41563331-41563350 Msa0163400:intron 15.0%
!!! ATTATAATTTTGTTCGTCAA+TGG - chr1_4:41562657-41562676 None:intergenic 20.0%
!!! CAAAATACAAAGATTGTTTT+GGG - chr1_4:41563742-41563761 None:intergenic 20.0%
!!! TCAAAATACAAAGATTGTTT+TGG - chr1_4:41563743-41563762 None:intergenic 20.0%
!!! ATTATAATTTTGTTCGTCAA+TGG - chr1_4:41562657-41562676 None:intergenic 20.0%
!!! CAAAATACAAAGATTGTTTT+GGG - chr1_4:41563742-41563761 None:intergenic 20.0%
!!! TCAAAATACAAAGATTGTTT+TGG - chr1_4:41563743-41563762 None:intergenic 20.0%
! AACAATGAAATGCATTAACA+AGG - chr1_4:41562776-41562795 None:intergenic 25.0%
! GGAACTTAAAACAAATCAAA+TGG - chr1_4:41562896-41562915 None:intergenic 25.0%
!!! TAACACCGTGTTTTAAATAA+CGG + chr1_4:41563017-41563036 Msa0163400:intron 25.0%
! ATTAAAAAAACCTCACAATG+AGG - chr1_4:41563573-41563592 None:intergenic 25.0%
! CATAACTAATGTTGTATATG+TGG + chr1_4:41563764-41563783 Msa0163400:three_prime_UTR 25.0%
! TAGAATGAAAGTTATCTTGT+TGG + chr1_4:41563790-41563809 Msa0163400:three_prime_UTR 25.0%
! AAAGTTATCTTGTTGGAAAT+TGG + chr1_4:41563797-41563816 Msa0163400:three_prime_UTR 25.0%
!! TTTTCACAAGTTTCATGAAT+AGG + chr1_4:41563834-41563853 Msa0163400:three_prime_UTR 25.0%
! TTTCACAAGTTTCATGAATA+GGG + chr1_4:41563835-41563854 Msa0163400:three_prime_UTR 25.0%
! AACAATGAAATGCATTAACA+AGG - chr1_4:41562776-41562795 None:intergenic 25.0%
! GGAACTTAAAACAAATCAAA+TGG - chr1_4:41562896-41562915 None:intergenic 25.0%
!!! TAACACCGTGTTTTAAATAA+CGG + chr1_4:41563017-41563036 Msa0163400:intron 25.0%
! ATTAAAAAAACCTCACAATG+AGG - chr1_4:41563573-41563592 None:intergenic 25.0%
! CATAACTAATGTTGTATATG+TGG + chr1_4:41563764-41563783 Msa0163400:three_prime_UTR 25.0%
! TAGAATGAAAGTTATCTTGT+TGG + chr1_4:41563790-41563809 Msa0163400:three_prime_UTR 25.0%
! AAAGTTATCTTGTTGGAAAT+TGG + chr1_4:41563797-41563816 Msa0163400:three_prime_UTR 25.0%
! TGATAATGCTTCATTTGTTC+AGG - chr1_4:41562082-41562101 None:intergenic 30.0%
! CAATGTTAAGTGGAAGTATA+AGG + chr1_4:41562187-41562206 Msa0163400:CDS 30.0%
GTTGTGATAACTATGAATGA+GGG - chr1_4:41562289-41562308 None:intergenic 30.0%
TGTTGTGATAACTATGAATG+AGG - chr1_4:41562290-41562309 None:intergenic 30.0%
TATATATACCTGAAAGAGCA+GGG - chr1_4:41562469-41562488 None:intergenic 30.0%
ATATATATACCTGAAAGAGC+AGG - chr1_4:41562470-41562489 None:intergenic 30.0%
ATGTTGAAGAAACGCAATTT+AGG - chr1_4:41562526-41562545 None:intergenic 30.0%
! TATAATTTGTGTTGTGACAG+TGG + chr1_4:41562671-41562690 Msa0163400:intron 30.0%
! ATAATTTGTGTTGTGACAGT+GGG + chr1_4:41562672-41562691 Msa0163400:intron 30.0%
TTATATATGTGTACCTTGAG+AGG - chr1_4:41562739-41562758 None:intergenic 30.0%
TGAAATGCATTAACAAGGAA+CGG - chr1_4:41562771-41562790 None:intergenic 30.0%
TTTGAATTTCTAACTAGGCT+AGG - chr1_4:41562987-41563006 None:intergenic 30.0%
! CATGACCGTTATTTAAAACA+CGG - chr1_4:41563025-41563044 None:intergenic 30.0%
TTATTGTAGCGTATAGTCTA+GGG - chr1_4:41563158-41563177 None:intergenic 30.0%
AGATTAGGGTTTATAGACAT+TGG + chr1_4:41563377-41563396 Msa0163400:CDS 30.0%
GATTAGGGTTTATAGACATT+GGG + chr1_4:41563378-41563397 Msa0163400:CDS 30.0%
ATTAGGGTTTATAGACATTG+GGG + chr1_4:41563379-41563398 Msa0163400:CDS 30.0%
! TCTTGTGTATATTGACTGTT+TGG + chr1_4:41563412-41563431 Msa0163400:CDS 30.0%
TACTACAAGTGAGTTATGAT+TGG + chr1_4:41563694-41563713 Msa0163400:three_prime_UTR 30.0%
ACTACAAGTGAGTTATGATT+GGG + chr1_4:41563695-41563714 Msa0163400:three_prime_UTR 30.0%
! TGATAATGCTTCATTTGTTC+AGG - chr1_4:41562082-41562101 None:intergenic 30.0%
! CAATGTTAAGTGGAAGTATA+AGG + chr1_4:41562187-41562206 Msa0163400:CDS 30.0%
GTTGTGATAACTATGAATGA+GGG - chr1_4:41562289-41562308 None:intergenic 30.0%
TGTTGTGATAACTATGAATG+AGG - chr1_4:41562290-41562309 None:intergenic 30.0%
TATATATACCTGAAAGAGCA+GGG - chr1_4:41562469-41562488 None:intergenic 30.0%
ATATATATACCTGAAAGAGC+AGG - chr1_4:41562470-41562489 None:intergenic 30.0%
ATGTTGAAGAAACGCAATTT+AGG - chr1_4:41562526-41562545 None:intergenic 30.0%
! TATAATTTGTGTTGTGACAG+TGG + chr1_4:41562671-41562690 Msa0163400:intron 30.0%
! ATAATTTGTGTTGTGACAGT+GGG + chr1_4:41562672-41562691 Msa0163400:intron 30.0%
TTATATATGTGTACCTTGAG+AGG - chr1_4:41562739-41562758 None:intergenic 30.0%
TGAAATGCATTAACAAGGAA+CGG - chr1_4:41562771-41562790 None:intergenic 30.0%
TTTGAATTTCTAACTAGGCT+AGG - chr1_4:41562987-41563006 None:intergenic 30.0%
! CATGACCGTTATTTAAAACA+CGG - chr1_4:41563025-41563044 None:intergenic 30.0%
TTATTGTAGCGTATAGTCTA+GGG - chr1_4:41563158-41563177 None:intergenic 30.0%
AGATTAGGGTTTATAGACAT+TGG + chr1_4:41563377-41563396 Msa0163400:CDS 30.0%
GATTAGGGTTTATAGACATT+GGG + chr1_4:41563378-41563397 Msa0163400:CDS 30.0%
ATTAGGGTTTATAGACATTG+GGG + chr1_4:41563379-41563398 Msa0163400:CDS 30.0%
! TCTTGTGTATATTGACTGTT+TGG + chr1_4:41563412-41563431 Msa0163400:CDS 30.0%
TACTACAAGTGAGTTATGAT+TGG + chr1_4:41563694-41563713 Msa0163400:three_prime_UTR 30.0%
ACTACAAGTGAGTTATGATT+GGG + chr1_4:41563695-41563714 Msa0163400:three_prime_UTR 30.0%
! TTCATTTGTTCAGGTTTCTG+TGG - chr1_4:41562073-41562092 None:intergenic 35.0%
AGTTACAAACCATACTTGTG+TGG + chr1_4:41562143-41562162 Msa0163400:five_prime_UTR 35.0%
GTTACAAACCATACTTGTGT+GGG + chr1_4:41562144-41562163 Msa0163400:five_prime_UTR 35.0%
AAAGACATGGCAATGTTAAG+TGG + chr1_4:41562177-41562196 Msa0163400:exon 35.0%
GAAATGCATTAACAAGGAAC+GGG - chr1_4:41562770-41562789 None:intergenic 35.0%
TTGATACTCTTAGCTTCCTA+TGG + chr1_4:41562867-41562886 Msa0163400:intron 35.0%
ACAAATCAAATGGCTACCAT+AGG - chr1_4:41562886-41562905 None:intergenic 35.0%
!! CGTGTTTTAAATAACGGTCA+TGG + chr1_4:41563023-41563042 Msa0163400:intron 35.0%
CTTGATTCTCCATAATAGCA+AGG - chr1_4:41563073-41563092 None:intergenic 35.0%
!! CTTGCTATTATGGAGAATCA+AGG + chr1_4:41563071-41563090 Msa0163400:intron 35.0%
ATTATGGAGAATCAAGGTTG+CGG + chr1_4:41563077-41563096 Msa0163400:intron 35.0%
CTTATTGTAGCGTATAGTCT+AGG - chr1_4:41563159-41563178 None:intergenic 35.0%
GACTATACGCTACAATAAGA+TGG + chr1_4:41563160-41563179 Msa0163400:intron 35.0%
AGTGTTTGTGACATTGTTCT+TGG - chr1_4:41563227-41563246 None:intergenic 35.0%
CAAGTTTACTATTAGGCAGA+AGG - chr1_4:41563601-41563620 None:intergenic 35.0%
TGCCTAATAGTAAACTTGCA+GGG + chr1_4:41563603-41563622 Msa0163400:three_prime_UTR 35.0%
! TTCATTTGTTCAGGTTTCTG+TGG - chr1_4:41562073-41562092 None:intergenic 35.0%
AGTTACAAACCATACTTGTG+TGG + chr1_4:41562143-41562162 Msa0163400:five_prime_UTR 35.0%
GTTACAAACCATACTTGTGT+GGG + chr1_4:41562144-41562163 Msa0163400:five_prime_UTR 35.0%
AAAGACATGGCAATGTTAAG+TGG + chr1_4:41562177-41562196 Msa0163400:exon 35.0%
GAAATGCATTAACAAGGAAC+GGG - chr1_4:41562770-41562789 None:intergenic 35.0%
TTGATACTCTTAGCTTCCTA+TGG + chr1_4:41562867-41562886 Msa0163400:intron 35.0%
ACAAATCAAATGGCTACCAT+AGG - chr1_4:41562886-41562905 None:intergenic 35.0%
!! CGTGTTTTAAATAACGGTCA+TGG + chr1_4:41563023-41563042 Msa0163400:intron 35.0%
CTTGATTCTCCATAATAGCA+AGG - chr1_4:41563073-41563092 None:intergenic 35.0%
!! CTTGCTATTATGGAGAATCA+AGG + chr1_4:41563071-41563090 Msa0163400:intron 35.0%
ATTATGGAGAATCAAGGTTG+CGG + chr1_4:41563077-41563096 Msa0163400:intron 35.0%
CTTATTGTAGCGTATAGTCT+AGG - chr1_4:41563159-41563178 None:intergenic 35.0%
GACTATACGCTACAATAAGA+TGG + chr1_4:41563160-41563179 Msa0163400:intron 35.0%
AGTGTTTGTGACATTGTTCT+TGG - chr1_4:41563227-41563246 None:intergenic 35.0%
CAAGTTTACTATTAGGCAGA+AGG - chr1_4:41563601-41563620 None:intergenic 35.0%
TGCCTAATAGTAAACTTGCA+GGG + chr1_4:41563603-41563622 Msa0163400:three_prime_UTR 35.0%
TCAGGTTTCTGTGGAACAAA+TGG - chr1_4:41562064-41562083 None:intergenic 40.0%
ATACTTGTGTGGGAGAAGAA+GGG + chr1_4:41562154-41562173 Msa0163400:five_prime_UTR 40.0%
TAAGTTCCTTAAGTTCACGC+TGG + chr1_4:41562908-41562927 Msa0163400:intron 40.0%
!! AGTCGTGATCCTTGCTATTA+TGG + chr1_4:41563061-41563080 Msa0163400:intron 40.0%
GGTACATACTACTTAGCTGT+AGG - chr1_4:41563206-41563225 None:intergenic 40.0%
AAACCCTAATCTTGCTCCAT+CGG - chr1_4:41563369-41563388 None:intergenic 40.0%
ACTGGAGGAGAACTTTCATT+TGG - chr1_4:41563446-41563465 None:intergenic 40.0%
ATAAGGCTCCTCATGATTCT+GGG - chr1_4:41563521-41563540 None:intergenic 40.0%
! ACTTCTGAAGAGCTTCCATA+AGG - chr1_4:41563538-41563557 None:intergenic 40.0%
CTGCCTAATAGTAAACTTGC+AGG + chr1_4:41563602-41563621 Msa0163400:three_prime_UTR 40.0%
CACCCTGCAAGTTTACTATT+AGG - chr1_4:41563608-41563627 None:intergenic 40.0%
TCAGGTTTCTGTGGAACAAA+TGG - chr1_4:41562064-41562083 None:intergenic 40.0%
ATACTTGTGTGGGAGAAGAA+GGG + chr1_4:41562154-41562173 Msa0163400:five_prime_UTR 40.0%
TAAGTTCCTTAAGTTCACGC+TGG + chr1_4:41562908-41562927 Msa0163400:intron 40.0%
!! AGTCGTGATCCTTGCTATTA+TGG + chr1_4:41563061-41563080 Msa0163400:intron 40.0%
GGTACATACTACTTAGCTGT+AGG - chr1_4:41563206-41563225 None:intergenic 40.0%
AAACCCTAATCTTGCTCCAT+CGG - chr1_4:41563369-41563388 None:intergenic 40.0%
ACTGGAGGAGAACTTTCATT+TGG - chr1_4:41563446-41563465 None:intergenic 40.0%
ATAAGGCTCCTCATGATTCT+GGG - chr1_4:41563521-41563540 None:intergenic 40.0%
! ACTTCTGAAGAGCTTCCATA+AGG - chr1_4:41563538-41563557 None:intergenic 40.0%
CTGCCTAATAGTAAACTTGC+AGG + chr1_4:41563602-41563621 Msa0163400:three_prime_UTR 40.0%
CACCCTGCAAGTTTACTATT+AGG - chr1_4:41563608-41563627 None:intergenic 40.0%
CTTCTTCTCCCACACAAGTA+TGG - chr1_4:41562155-41562174 None:intergenic 45.0%
CATACTTGTGTGGGAGAAGA+AGG + chr1_4:41562153-41562172 Msa0163400:five_prime_UTR 45.0%
TATGTTGACAGGCAGCTTCA+TGG - chr1_4:41562427-41562446 None:intergenic 45.0%
! CTCTGAAGGTCTATGTTGAC+AGG - chr1_4:41562438-41562457 None:intergenic 45.0%
ATTCGATTCCCTGCTCTTTC+AGG + chr1_4:41562458-41562477 Msa0163400:CDS 45.0%
AGCTATCCAGCGTGAACTTA+AGG - chr1_4:41562917-41562936 None:intergenic 45.0%
TTGTAATGCCATCCCGATTG+AGG - chr1_4:41563112-41563131 None:intergenic 45.0%
! CAGGTTGACAAAATACCCGA+TGG + chr1_4:41563350-41563369 Msa0163400:intron 45.0%
ATACCCGATGGAGCAAGATT+AGG + chr1_4:41563362-41563381 Msa0163400:CDS 45.0%
TACCCGATGGAGCAAGATTA+GGG + chr1_4:41563363-41563382 Msa0163400:CDS 45.0%
AACCCTAATCTTGCTCCATC+GGG - chr1_4:41563368-41563387 None:intergenic 45.0%
! TTTTCCAAGCGACCAGACAT+GGG + chr1_4:41563465-41563484 Msa0163400:CDS 45.0%
ACATGGGCGCATGAAAGATA+AGG + chr1_4:41563481-41563500 Msa0163400:CDS 45.0%
CATAAGGCTCCTCATGATTC+TGG - chr1_4:41563522-41563541 None:intergenic 45.0%
CAGAATCATGAGGAGCCTTA+TGG + chr1_4:41563520-41563539 Msa0163400:CDS 45.0%
GTTCAGATTGCCTCATTGTG+AGG + chr1_4:41563560-41563579 Msa0163400:CDS 45.0%
CTTCTTCTCCCACACAAGTA+TGG - chr1_4:41562155-41562174 None:intergenic 45.0%
CATACTTGTGTGGGAGAAGA+AGG + chr1_4:41562153-41562172 Msa0163400:five_prime_UTR 45.0%
TATGTTGACAGGCAGCTTCA+TGG - chr1_4:41562427-41562446 None:intergenic 45.0%
! CTCTGAAGGTCTATGTTGAC+AGG - chr1_4:41562438-41562457 None:intergenic 45.0%
ATTCGATTCCCTGCTCTTTC+AGG + chr1_4:41562458-41562477 Msa0163400:CDS 45.0%
AGCTATCCAGCGTGAACTTA+AGG - chr1_4:41562917-41562936 None:intergenic 45.0%
TTGTAATGCCATCCCGATTG+AGG - chr1_4:41563112-41563131 None:intergenic 45.0%
! CAGGTTGACAAAATACCCGA+TGG + chr1_4:41563350-41563369 Msa0163400:intron 45.0%
ATACCCGATGGAGCAAGATT+AGG + chr1_4:41563362-41563381 Msa0163400:CDS 45.0%
TACCCGATGGAGCAAGATTA+GGG + chr1_4:41563363-41563382 Msa0163400:CDS 45.0%
AACCCTAATCTTGCTCCATC+GGG - chr1_4:41563368-41563387 None:intergenic 45.0%
! TTTTCCAAGCGACCAGACAT+GGG + chr1_4:41563465-41563484 Msa0163400:CDS 45.0%
ACATGGGCGCATGAAAGATA+AGG + chr1_4:41563481-41563500 Msa0163400:CDS 45.0%
CATAAGGCTCCTCATGATTC+TGG - chr1_4:41563522-41563541 None:intergenic 45.0%
CAGAATCATGAGGAGCCTTA+TGG + chr1_4:41563520-41563539 Msa0163400:CDS 45.0%
GTTCAGATTGCCTCATTGTG+AGG + chr1_4:41563560-41563579 Msa0163400:CDS 45.0%
GGGAGAAGAAGGGAAAGACA+TGG + chr1_4:41562164-41562183 Msa0163400:exon 50.0%
TGCTTGAGTATGCAGCTGAG+AGG + chr1_4:41562222-41562241 Msa0163400:CDS 50.0%
AGTATGCAGCTGAGAGGAAC+AGG + chr1_4:41562228-41562247 Msa0163400:CDS 50.0%
!! TGAATGAGGGAGTGCTGAGA+AGG - chr1_4:41562276-41562295 None:intergenic 50.0%
GGCTATGAAGCACGAGAGAA+TGG - chr1_4:41562323-41562342 None:intergenic 50.0%
TCATAGCCGCTTCCATCTCA+CGG + chr1_4:41562335-41562354 Msa0163400:CDS 50.0%
TAGCTTCCCGCGGAAACTTT+GGG - chr1_4:41562369-41562388 None:intergenic 50.0%
GCAGGGAATCGAATCTCTGA+AGG - chr1_4:41562452-41562471 None:intergenic 50.0%
TATGTGTACCTTGAGAGGCG+TGG - chr1_4:41562734-41562753 None:intergenic 50.0%
TGTCTGGTCGCTTGGAAAAC+TGG - chr1_4:41563464-41563483 None:intergenic 50.0%
! GTTTTCCAAGCGACCAGACA+TGG + chr1_4:41563464-41563483 Msa0163400:CDS 50.0%
ATCTTTCATGCGCCCATGTC+TGG - chr1_4:41563480-41563499 None:intergenic 50.0%
!! CATGAAAGATAAGGTGCCGC+CGG + chr1_4:41563490-41563509 Msa0163400:CDS 50.0%
!! ATGAAAGATAAGGTGCCGCC+GGG + chr1_4:41563491-41563510 Msa0163400:CDS 50.0%
GGGAGAAGAAGGGAAAGACA+TGG + chr1_4:41562164-41562183 Msa0163400:exon 50.0%
TGCTTGAGTATGCAGCTGAG+AGG + chr1_4:41562222-41562241 Msa0163400:CDS 50.0%
AGTATGCAGCTGAGAGGAAC+AGG + chr1_4:41562228-41562247 Msa0163400:CDS 50.0%
!! TGAATGAGGGAGTGCTGAGA+AGG - chr1_4:41562276-41562295 None:intergenic 50.0%
GGCTATGAAGCACGAGAGAA+TGG - chr1_4:41562323-41562342 None:intergenic 50.0%
TCATAGCCGCTTCCATCTCA+CGG + chr1_4:41562335-41562354 Msa0163400:CDS 50.0%
TAGCTTCCCGCGGAAACTTT+GGG - chr1_4:41562369-41562388 None:intergenic 50.0%
GCAGGGAATCGAATCTCTGA+AGG - chr1_4:41562452-41562471 None:intergenic 50.0%
TATGTGTACCTTGAGAGGCG+TGG - chr1_4:41562734-41562753 None:intergenic 50.0%
TGTCTGGTCGCTTGGAAAAC+TGG - chr1_4:41563464-41563483 None:intergenic 50.0%
! GTTTTCCAAGCGACCAGACA+TGG + chr1_4:41563464-41563483 Msa0163400:CDS 50.0%
ATCTTTCATGCGCCCATGTC+TGG - chr1_4:41563480-41563499 None:intergenic 50.0%
!! CATGAAAGATAAGGTGCCGC+CGG + chr1_4:41563490-41563509 Msa0163400:CDS 50.0%
!! ATGAAAGATAAGGTGCCGCC+GGG + chr1_4:41563491-41563510 Msa0163400:CDS 50.0%
GTAGCTTCCCGCGGAAACTT+TGG - chr1_4:41562370-41562389 None:intergenic 55.0%
CAGAGAGACTCCATCGTCGT+CGG - chr1_4:41562400-41562419 None:intergenic 55.0%
GACGACGATGGAGTCTCTCT+GGG + chr1_4:41562399-41562418 Msa0163400:CDS 55.0%
TGGGCAAACAGCCTTTGCCA+GGG + chr1_4:41562691-41562710 Msa0163400:CDS 55.0%
! AAAGTGGTAGACTGGCTCCC+TGG - chr1_4:41562711-41562730 None:intergenic 55.0%
AGGCGTGGAAAGTGGTAGAC+TGG - chr1_4:41562719-41562738 None:intergenic 55.0%
ACCACTTTCCACGCCTCTCA+AGG + chr1_4:41562723-41562742 Msa0163400:CDS 55.0%
! ACCTTGAGAGGCGTGGAAAG+TGG - chr1_4:41562727-41562746 None:intergenic 55.0%
CATCCCGATTGAGGCTGCAT+TGG - chr1_4:41563103-41563122 None:intergenic 55.0%
CAATGCAGCCTCAATCGGGA+TGG + chr1_4:41563101-41563120 Msa0163400:intron 55.0%
CTGGTCGCTTGGAAAACTGG+AGG - chr1_4:41563461-41563480 None:intergenic 55.0%
CTCATGATTCTGGGCTCACC+CGG - chr1_4:41563512-41563531 None:intergenic 55.0%
GTAGCTTCCCGCGGAAACTT+TGG - chr1_4:41562370-41562389 None:intergenic 55.0%
CAGAGAGACTCCATCGTCGT+CGG - chr1_4:41562400-41562419 None:intergenic 55.0%
GACGACGATGGAGTCTCTCT+GGG + chr1_4:41562399-41562418 Msa0163400:CDS 55.0%
TGGGCAAACAGCCTTTGCCA+GGG + chr1_4:41562691-41562710 Msa0163400:CDS 55.0%
! AAAGTGGTAGACTGGCTCCC+TGG - chr1_4:41562711-41562730 None:intergenic 55.0%
AGGCGTGGAAAGTGGTAGAC+TGG - chr1_4:41562719-41562738 None:intergenic 55.0%
ACCACTTTCCACGCCTCTCA+AGG + chr1_4:41562723-41562742 Msa0163400:CDS 55.0%
! ACCTTGAGAGGCGTGGAAAG+TGG - chr1_4:41562727-41562746 None:intergenic 55.0%
CATCCCGATTGAGGCTGCAT+TGG - chr1_4:41563103-41563122 None:intergenic 55.0%
CAATGCAGCCTCAATCGGGA+TGG + chr1_4:41563101-41563120 Msa0163400:intron 55.0%
CTGGTCGCTTGGAAAACTGG+AGG - chr1_4:41563461-41563480 None:intergenic 55.0%
CTCATGATTCTGGGCTCACC+CGG - chr1_4:41563512-41563531 None:intergenic 55.0%
!! AGGGAGTGCTGAGAAGGCAG+TGG - chr1_4:41562270-41562289 None:intergenic 60.0%
TAGCCGCTTCCATCTCACGG+TGG + chr1_4:41562338-41562357 Msa0163400:CDS 60.0%
AGACTCCATCGTCGTCGGTG+GGG - chr1_4:41562395-41562414 None:intergenic 60.0%
GAGACTCCATCGTCGTCGGT+GGG - chr1_4:41562396-41562415 None:intergenic 60.0%
AGAGACTCCATCGTCGTCGG+TGG - chr1_4:41562397-41562416 None:intergenic 60.0%
CGACGACGATGGAGTCTCTC+TGG + chr1_4:41562398-41562417 Msa0163400:CDS 60.0%
GTGGGCAAACAGCCTTTGCC+AGG + chr1_4:41562690-41562709 Msa0163400:intron 60.0%
! GTAGACTGGCTCCCTGGCAA+AGG - chr1_4:41562705-41562724 None:intergenic 60.0%
GCGGCCAATGCAGCCTCAAT+CGG + chr1_4:41563096-41563115 Msa0163400:intron 60.0%
CGGCCAATGCAGCCTCAATC+GGG + chr1_4:41563097-41563116 Msa0163400:intron 60.0%
ATGATTCTGGGCTCACCCGG+CGG - chr1_4:41563509-41563528 None:intergenic 60.0%
CGGGTGAGCCCAGAATCATG+AGG + chr1_4:41563510-41563529 Msa0163400:CDS 60.0%
!! AGGGAGTGCTGAGAAGGCAG+TGG - chr1_4:41562270-41562289 None:intergenic 60.0%
TAGCCGCTTCCATCTCACGG+TGG + chr1_4:41562338-41562357 Msa0163400:CDS 60.0%
AGACTCCATCGTCGTCGGTG+GGG - chr1_4:41562395-41562414 None:intergenic 60.0%
GAGACTCCATCGTCGTCGGT+GGG - chr1_4:41562396-41562415 None:intergenic 60.0%
AGAGACTCCATCGTCGTCGG+TGG - chr1_4:41562397-41562416 None:intergenic 60.0%
CGACGACGATGGAGTCTCTC+TGG + chr1_4:41562398-41562417 Msa0163400:CDS 60.0%
GTGGGCAAACAGCCTTTGCC+AGG + chr1_4:41562690-41562709 Msa0163400:intron 60.0%
! GTAGACTGGCTCCCTGGCAA+AGG - chr1_4:41562705-41562724 None:intergenic 60.0%
GCGGCCAATGCAGCCTCAAT+CGG + chr1_4:41563096-41563115 Msa0163400:intron 60.0%
CGGCCAATGCAGCCTCAATC+GGG + chr1_4:41563097-41563116 Msa0163400:intron 60.0%
ATGATTCTGGGCTCACCCGG+CGG - chr1_4:41563509-41563528 None:intergenic 60.0%
CGGGTGAGCCCAGAATCATG+AGG + chr1_4:41563510-41563529 Msa0163400:CDS 60.0%
CCGCCACCGTGAGATGGAAG+CGG - chr1_4:41562344-41562363 None:intergenic 65.0%
CCGCTTCCATCTCACGGTGG+CGG + chr1_4:41562341-41562360 Msa0163400:CDS 65.0%
GGCGGCACCCAAAGTTTCCG+CGG + chr1_4:41562359-41562378 Msa0163400:CDS 65.0%
GCGGCACCCAAAGTTTCCGC+GGG + chr1_4:41562360-41562379 Msa0163400:CDS 65.0%
TACAGCCCCACCGACGACGA+TGG + chr1_4:41562387-41562406 Msa0163400:CDS 65.0%
TGCGCCCATGTCTGGTCGCT+TGG - chr1_4:41563472-41563491 None:intergenic 65.0%
CCGCCACCGTGAGATGGAAG+CGG - chr1_4:41562344-41562363 None:intergenic 65.0%
CCGCTTCCATCTCACGGTGG+CGG + chr1_4:41562341-41562360 Msa0163400:CDS 65.0%
GGCGGCACCCAAAGTTTCCG+CGG + chr1_4:41562359-41562378 Msa0163400:CDS 65.0%
GCGGCACCCAAAGTTTCCGC+GGG + chr1_4:41562360-41562379 Msa0163400:CDS 65.0%
TACAGCCCCACCGACGACGA+TGG + chr1_4:41562387-41562406 Msa0163400:CDS 65.0%
TGCGCCCATGTCTGGTCGCT+TGG - chr1_4:41563472-41563491 None:intergenic 65.0%
! TGGGTGCCGCCACCGTGAGA+TGG - chr1_4:41562350-41562369 None:intergenic 70.0%
GGTGGGGCTGTAGCTTCCCG+CGG - chr1_4:41562379-41562398 None:intergenic 70.0%
! TGGGTGCCGCCACCGTGAGA+TGG - chr1_4:41562350-41562369 None:intergenic 70.0%
GGTGGGGCTGTAGCTTCCCG+CGG - chr1_4:41562379-41562398 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 41562047 41563854 41562047 ID=Msa0163400;Name=Msa0163400
chr1_4 mRNA 41562047 41563854 41562047 ID=Msa0163400-mRNA-1;Parent=Msa0163400;Name=Msa0163400-mRNA-1;_AED=0.00;_eAED=0.00;_QI=136|1|1|1|1|1|3|274|192
chr1_4 exon 41562047 41562479 41562047 ID=Msa0163400-mRNA-1:exon:11930;Parent=Msa0163400-mRNA-1
chr1_4 exon 41562691 41562744 41562691 ID=Msa0163400-mRNA-1:exon:11931;Parent=Msa0163400-mRNA-1
chr1_4 exon 41563353 41563854 41563353 ID=Msa0163400-mRNA-1:exon:11932;Parent=Msa0163400-mRNA-1
chr1_4 five_prime_UTR 41562047 41562182 41562047 ID=Msa0163400-mRNA-1:five_prime_utr;Parent=Msa0163400-mRNA-1
chr1_4 CDS 41562183 41562479 41562183 ID=Msa0163400-mRNA-1:cds;Parent=Msa0163400-mRNA-1
chr1_4 CDS 41562691 41562744 41562691 ID=Msa0163400-mRNA-1:cds;Parent=Msa0163400-mRNA-1
chr1_4 CDS 41563353 41563580 41563353 ID=Msa0163400-mRNA-1:cds;Parent=Msa0163400-mRNA-1
chr1_4 three_prime_UTR 41563581 41563854 41563581 ID=Msa0163400-mRNA-1:three_prime_utr;Parent=Msa0163400-mRNA-1
Gene Sequence

>Msa0163400

ATGGCAATGTTAAGTGGAAGTATAAGGCAGCAGAGTGTGTGCTTGAGTATGCAGCTGAGAGGAACAGGATTGAATTCTCATGTTCCACTGCCTTCTCAGCACTCCCTCATTCATAGTTATCACAACAACAACAACAACCATTCTCTCGTGCTTCATAGCCGCTTCCATCTCACGGTGGCGGCACCCAAAGTTTCCGCGGGAAGCTACAGCCCCACCGACGACGATGGAGTCTCTCTGGGCACCATGAAGCTGCCTGTCAACATAGACCTTCAGAGATTCGATTCCCTGCTCTTTCAGTGGGCAAACAGCCTTTGCCAGGGAGCCAGTCTACCACTTTCCACGCCTCTCAAGGTTGACAAAATACCCGATGGAGCAAGATTAGGGTTTATAGACATTGGGGAAACAGAAGTTCTTGTGTATATTGACTGTTTGGTTTTTAAACCAAATGAAAGTTCTCCTCCAGTTTTCCAAGCGACCAGACATGGGCGCATGAAAGATAAGGTGCCGCCGGGTGAGCCCAGAATCATGAGGAGCCTTATGGAAGCTCTTCAGAAGTCAGTTCAGATTGCCTCATTGTGA

Protein sequence

>Msa0163400

MAMLSGSIRQQSVCLSMQLRGTGLNSHVPLPSQHSLIHSYHNNNNNHSLVLHSRFHLTVAAPKVSAGSYSPTDDDGVSLGTMKLPVNIDLQRFDSLLFQWANSLCQGASLPLSTPLKVDKIPDGARLGFIDIGETEVLVYIDCLVFKPNESSPPVFQATRHGRMKDKVPPGEPRIMRSLMEALQKSVQIASL*